Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 236 of 770
Found at i:70736029 original size:64 final size:64
Alignment explanation
Indices: 70735948--70736131 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
70735938 AGACATTATG
* *
70735948 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
70736012 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70736077 AA
63 AA
* * * *
70736079 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
70736132 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70739626 original size:49 final size:49
Alignment explanation
Indices: 70739556--70739910 Score: 635
Period size: 49 Copynumber: 7.3 Consensus size: 49
70739546 CCCTTCGGGA
*
70739556 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
70739603 CTTATCACATATATATACACTTTCACATTCATCACATCGGCC-TTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70739651 CTTATCACATATATACACACTTTCACATTCTTCACATCGGCCGTTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
70739700 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
70739749 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
70739798 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
70739847 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
70739896 CTTATCACATATATA
1 CTTATCACATATATA
70739911 TATCTCATAC
Statistics
Matches: 301, Mismatches: 4, Indels: 4
0.97 0.01 0.01
Matches are distributed among these distances:
47 10 0.03
48 47 0.16
49 244 0.81
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70752155 original size:39 final size:39
Alignment explanation
Indices: 70752100--70752177 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
70752090 AAAAAGATAC
*
70752100 TTACCTAAACTTTCTTGTGCGCCAAAACTATCTCAAGGA
1 TTACCTAAACTTTCTTGTGCACCAAAACTATCTCAAGGA
*
70752139 TTACTTAAACTTTCTTGTGCACCAAAACTATCTCAAGGA
1 TTACCTAAACTTTCTTGTGCACCAAAACTATCTCAAGGA
70752178 CCAAAGATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (39 bp):
TTACCTAAACTTTCTTGTGCACCAAAACTATCTCAAGGA
Found at i:70755037 original size:11 final size:11
Alignment explanation
Indices: 70755021--70755047 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
70755011 CCTAAATGAC
70755021 AAATTCATCAA
1 AAATTCATCAA
70755032 AAATTCATCAA
1 AAATTCATCAA
70755043 AAATT
1 AAATT
70755048 TCTTTACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (11 bp):
AAATTCATCAA
Found at i:70758306 original size:27 final size:27
Alignment explanation
Indices: 70758276--70758766 Score: 616
Period size: 27 Copynumber: 18.2 Consensus size: 27
70758266 AAAGTACTCC
*
70758276 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
70758303 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
70758330 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
70758357 -TAGTTTACAGAATTACCGTTTTACCAT
1 CGA-TTTACAGAATTACCGTTTTACCCT
70758384 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
70758411 -TAGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
70758438 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70758465 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * **
70758492 CGATTTGTAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70758519 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
70758546 C-AGTTTACAGAATTACTC-TTTTACCCT
1 CGA-TTTACAGAATTAC-CGTTTTACCCT
70758573 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
70758600 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
70758627 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
70758654 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
70758681 TGATTTATAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
70758708 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
70758735 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70758762 TGATT
1 CGATT
70758767 GTGAAATTAC
Statistics
Matches: 406, Mismatches: 46, Indels: 24
0.85 0.10 0.05
Matches are distributed among these distances:
26 6 0.01
27 394 0.97
28 6 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:70758801 original size:27 final size:27
Alignment explanation
Indices: 70758771--70758965 Score: 239
Period size: 27 Copynumber: 7.2 Consensus size: 27
70758761 TTGATTGTGA
70758771 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
70758798 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
70758825 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** *
70758852 AATTACCAAAAAACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
70758879 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
70758906 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
70758933 AATTACTGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
70758960 AATTAC
1 AATTAC
70758966 CATTTTGCCC
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:70758839 original size:54 final size:54
Alignment explanation
Indices: 70758771--70758966 Score: 268
Period size: 54 Copynumber: 3.6 Consensus size: 54
70758761 TTGATTGTGA
* * * *
70758771 AATTACTGAAATACCCCTGTAGGGTAGAATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
70758825 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAAAACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
70758879 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
70758933 AATTACTGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
70758967 ATTTTGCCCC
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 121 0.98
55 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:70759203 original size:27 final size:26
Alignment explanation
Indices: 70759165--70759247 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
70759155 CGGAGGAAGC
*
70759165 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
70759192 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
70759218 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
70759245 GTT
1 GTT
70759248 GACCGATCGA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 10 0.19
27 42 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:70759367 original size:22 final size:22
Alignment explanation
Indices: 70759335--70759393 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
70759325 CCCGTTATTA
*
70759335 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
70759357 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
70759379 ATGGCTTTGTGCCAA
1 ATGGCTTTGTGCCAA
70759394 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:70759580 original size:27 final size:27
Alignment explanation
Indices: 70759558--70759624 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
70759548 TAGGTGGGTT
*
70759558 TGCCACATTATCTGAT-TCTGGTGGCTC
1 TGCCACAATATCT-ATATCTGGTGGCTC
*
70759585 TGCCACAATATCTATATCTGGTGACTC
1 TGCCACAATATCTATATCTGGTGGCTC
* *
70759612 TGTCACGATATCT
1 TGCCACAATATCT
70759625 GTTCTGGCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTATATCTGGTGGCTC
Found at i:70759789 original size:6 final size:6
Alignment explanation
Indices: 70759778--70760025 Score: 228
Period size: 6 Copynumber: 41.0 Consensus size: 6
70759768 ACGTAATTTC
* *
70759778 GATTCT GATTCT GATTCT G-TTACT AATACT GATTCT GATTCT GATTCT
1 GATTCT GATTCT GATTCT GATT-CT GATTCT GATTCT GATTCT GATTCT
* *
70759826 G-TTACT GATTCT GATTCT GATTCT -ATCACCT AATTCT GATTCT GATTCT
1 GATT-CT GATTCT GATTCT GATTCT GAT--TCT GATTCT GATTCT GATTCT
*
70759875 GATTCT G-TTACT AATAT-T GATTCT GATTCT GATTCT G-TTACT GATTCT
1 GATTCT GATT-CT GAT-TCT GATTCT GATTCT GATTCT GATT-CT GATTCT
* *
70759923 GATTCT GATTCT GATTCT G-TCACCT AATTCT GATTCT GATTCT GATTCT
1 GATTCT GATTCT GATTCT GAT--TCT GATTCT GATTCT GATTCT GATTCT
* * *
70759972 G-TTACT AATAT-T GATTCT GATTCT GATTCT G-TTACT GATTCT AATTTT
1 GATT-CT GAT-TCT GATTCT GATTCT GATTCT GATT-CT GATTCT GATTCT
70760020 GATTCT
1 GATTCT
70760026 CATTTTGGTT
Statistics
Matches: 201, Mismatches: 19, Indels: 44
0.76 0.07 0.17
Matches are distributed among these distances:
5 17 0.08
6 166 0.83
7 13 0.06
8 5 0.02
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
GATTCT
Found at i:70759879 original size:85 final size:85
Alignment explanation
Indices: 70759748--70760025 Score: 432
Period size: 85 Copynumber: 3.2 Consensus size: 85
70759738 ATTGATTCAC
* * * *
70759748 ATTCTGATTCTAATTCTGTCACGTAATT-TCGATTCTGATTCTGATTCTGTTACTAATACTGATT
1 ATTCTGATTCTGATTCTATCACCTAATTCT-GATTCTGATTCTGATTCTGTTACTAATATTGATT
70759812 CTGATTCTGATTCTGTTACTG
65 CTGATTCTGATTCTGTTACTG
70759833 ATTCTGATTCTGATTCTATCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTATCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
70759898 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
70759918 ATTCTGATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATAT
1 ATTCTGATTCTGATTCT-A-----TCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATAT
70759983 TGATTCTGATTCTGATTCTGTTACTG
60 TGATTCTGATTCTGATTCTGTTACTG
* *
70760009 ATTCTAATTTTGATTCT
1 ATTCTGATTCTGATTCT
70760026 CATTTTGGTT
Statistics
Matches: 180, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
85 96 0.53
86 2 0.01
91 82 0.46
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTATCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
TGATTCTGATTCTGTTACTG
Found at i:70759901 original size:91 final size:91
Alignment explanation
Indices: 70759748--70760025 Score: 453
Period size: 91 Copynumber: 3.1 Consensus size: 91
70759738 ATTGATTCAC
* * *
70759748 ATTCTGATTCTAATTCTGTCACGTAATT-TCGATTCTGATTCTGATTCTGTTACTAATACTGATT
1 ATTCTGATTCTGATTCTGTCACCTAATTCT-GATTCTGATTCTGATTCTGTTACTAATATTGATT
70759812 CTGATTCTGATTCTGTTACTGATTCTG
65 CTGATTCTGATTCTGTTACTGATTCTG
70759839 ATTCTGATTCT-A-----TCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
70759898 TGATTCTGATTCTGTTACTGATTCTG
66 TGATTCTGATTCTGTTACTGATTCTG
70759924 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
*
70759989 TGATTCTGATTCTGTTACTGATTCTA
66 TGATTCTGATTCTGTTACTGATTCTG
*
70760015 ATTTTGATTCT
1 ATTCTGATTCT
70760026 CATTTTGGTT
Statistics
Matches: 176, Mismatches: 4, Indels: 14
0.91 0.02 0.07
Matches are distributed among these distances:
85 80 0.45
86 2 0.01
90 1 0.01
91 93 0.53
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (91 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
TGATTCTGATTCTGTTACTGATTCTG
Found at i:70763925 original size:42 final size:42
Alignment explanation
Indices: 70763810--70763927 Score: 105
Period size: 43 Copynumber: 2.8 Consensus size: 42
70763800 CTGAGACATC
* * *
70763810 GTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTGA
1 GTGTAAGACCATGTCTGGGACAAAGGCATCGATT-AGATTTGA
* * ** * *
70763853 GTATAAGACCATGTCTAGGACATCGACATCGTATCT-GATTT-T
1 GTGTAAGACCATGTCTGGGACAAAGGCATCG-AT-TAGATTTGA
*
70763895 GTGTAAGACCCTGTCTGGGACAAAGGCATCGAT
1 GTGTAAGACCATGTCTGGGACAAAGGCATCGAT
70763928 ATTGAATTAC
Statistics
Matches: 59, Mismatches: 14, Indels: 6
0.75 0.18 0.08
Matches are distributed among these distances:
41 2 0.03
42 25 0.42
43 29 0.49
44 2 0.03
45 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACAAAGGCATCGATTAGATTTGA
Found at i:70766901 original size:36 final size:36
Alignment explanation
Indices: 70766828--70766902 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 36
70766818 CATTAATAAC
* **
70766828 AATTTTAAGTAAAAAGGTGATAAAAGTTTTAACAAA
1 AATTTTAAGTAAAAAGGTGATAAAAGATAAAACAAA
* *
70766864 AATTTTAAGTAAAAAGGTGATAAATGATAAAAGAAA
1 AATTTTAAGTAAAAAGGTGATAAAAGATAAAACAAA
70766900 AAT
1 AAT
70766903 CCTATATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.56, C:0.01, G:0.15, T:0.28
Consensus pattern (36 bp):
AATTTTAAGTAAAAAGGTGATAAAAGATAAAACAAA
Found at i:70769899 original size:40 final size:40
Alignment explanation
Indices: 70769844--70769984 Score: 228
Period size: 40 Copynumber: 3.5 Consensus size: 40
70769834 TATGTGCATA
70769844 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
70769884 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* * *
70769924 GCATTCGTGCGGGCTATTATAATCGGGTTAAGTCTCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
70769964 GCATTCGTGCTGGTTGTTATA
1 GCATTCGTGCGGGTTATTATA
70769985 TCGGAGACAA
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:70777231 original size:27 final size:28
Alignment explanation
Indices: 70777175--70777244 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
70777165 AAATTTGTAC
70777175 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
70777203 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
70777230 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70777245 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:70777255 original size:27 final size:27
Alignment explanation
Indices: 70777175--70777256 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
70777165 AAATTTGTAC
* *
70777175 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
70777203 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
70777230 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
70777257 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:70783236 original size:13 final size:13
Alignment explanation
Indices: 70783220--70783244 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70783210 TTAAATTAGT
70783220 TAATTAGTTTAAA
1 TAATTAGTTTAAA
70783233 TAATTAGTTTAA
1 TAATTAGTTTAA
70783245 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:70785197 original size:31 final size:31
Alignment explanation
Indices: 70785162--70785225 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
70785152 CCTTTTCATA
70785162 TTTCATATTTCATAACACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
** * *
70785193 TTTCATATTTCATATTACTGGGCTGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
70785224 TT
1 TT
70785226 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:70785490 original size:25 final size:25
Alignment explanation
Indices: 70785434--70785541 Score: 166
Period size: 25 Copynumber: 4.4 Consensus size: 25
70785424 CTGGAGGCCT
*
70785434 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTAATAAACTAGGGCAAA
* *
70785458 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTAGGGCAAA
70785483 AGCCCTTTTAATAAACTAGGGCAAA
1 AGCCCTTTTAATAAACTAGGGCAAA
70785508 AGCCCTTTTAATAAACTAGGGCAAA
1 AGCCCTTTTAATAAACTAGGGCAAA
70785533 AGCCCTTTT
1 AGCCCTTTT
70785542 TGCACCTCCT
Statistics
Matches: 79, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
23 7 0.09
24 13 0.16
25 59 0.75
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTAGGGCAAA
Found at i:70785612 original size:20 final size:20
Alignment explanation
Indices: 70785589--70785635 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
70785579 TTATGAATAC
70785589 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
70785608 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
70785629 ATCATGT
1 ATCATGT
70785636 ATATCAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:70793553 original size:24 final size:24
Alignment explanation
Indices: 70793508--70793589 Score: 103
Period size: 24 Copynumber: 3.4 Consensus size: 24
70793498 CTGGAGGCCT
70793508 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
* *
70793532 TGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTAATAAACTGGGGCAA
* *
70793556 AACCCTTTTAATAAACTAGGGCAAA
1 AGCCCTTTTAATAAACTGGGGC-AA
70793581 AGCCCTTTT
1 AGCCCTTTT
70793590 TGCAGTTCCT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
23 7 0.14
24 32 0.65
25 10 0.20
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:70793660 original size:20 final size:20
Alignment explanation
Indices: 70793637--70793683 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
70793627 TTATGAATAC
70793637 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
70793656 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
70793677 ATCATGT
1 ATCATGT
70793684 ATATCAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:70800207 original size:40 final size:40
Alignment explanation
Indices: 70800152--70800401 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
70800142 AACATTGGAA
70800152 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
70800192 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
70800232 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
70800272 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
70800312 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
70800351 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
70800392 CTATATCCGG
1 ATATATCCGG
70800402 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:70810824 original size:39 final size:40
Alignment explanation
Indices: 70810662--70810839 Score: 200
Period size: 40 Copynumber: 4.5 Consensus size: 40
70810652 GCTCGATTGT
* * * *
70810662 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
* * *
70810702 CTTCGGGAATTAGCCCGGATTTAATAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
70810742 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
70810782 CTTCGGGA-TTA-CCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCACAAATGC
70810821 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
70810840 CACATTCGAA
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 12 0.10
39 21 0.18
40 75 0.65
41 8 0.07
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:70818203 original size:40 final size:39
Alignment explanation
Indices: 70818145--70818337 Score: 140
Period size: 40 Copynumber: 4.8 Consensus size: 39
70818135 GGATATAGCG
* * * *
70818145 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
70818185 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGG-TTTAGTA
* * *
70818225 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCCGG-TTTAGTA
* * * *
70818265 ACTCGCACAAATGCCTTCGGGA-GTTGACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATAG-CCCGG-TTTAGTA
* ** *
70818305 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAATTGCCTTCGGGACATAGCCCGG
70818338 ACACCATTCG
Statistics
Matches: 123, Mismatches: 22, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
39 4 0.03
40 90 0.73
41 27 0.22
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:70818257 original size:80 final size:80
Alignment explanation
Indices: 70818145--70818337 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
70818135 GGATATAGCG
* * * * * * *
70818145 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
70818210 -AGCCCGGATTTAATA
66 GA-CCCGGATTTAATA
* * * *
70818225 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
* *
70818290 GACCCGGATTTAGTC
66 GACCCGGATTTAATA
* * *
70818305 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGG
70818338 ACACCATTCG
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
80 67 0.71
81 27 0.29
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
GACCCGGATTTAATA
Found at i:70818326 original size:41 final size:39
Alignment explanation
Indices: 70818187--70818338 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 39
70818177 TTATAGTGAT
* *
70818187 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAGTAAC
* * * *
70818227 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* *
70818267 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* * *
70818307 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGAATTA-CCCGGA
70818339 CACCATTCGA
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
40 67 0.71
41 27 0.29
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTAAC
Found at i:70821796 original size:40 final size:40
Alignment explanation
Indices: 70821741--70821918 Score: 221
Period size: 40 Copynumber: 4.5 Consensus size: 40
70821731 CGAATGGTAT
* *
70821741 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
70821781 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
70821821 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * * * * *
70821861 CCGGGCTAATTCTCGAAGGCAATTGTGAGAATTACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
70821901 CCGGGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
70821919 ACAATCGAGC
Statistics
Matches: 121, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:70821931 original size:80 final size:80
Alignment explanation
Indices: 70821767--70821944 Score: 185
Period size: 80 Copynumber: 2.2 Consensus size: 80
70821757 AGGCATTTGT
* * * * * * * *
70821767 GCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGT
1 GCGAGTTGCTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGAGAATTACCAAAACCGGGCTAAGT
* * * *
70821832 CCCGAAGGCATTTGT
66 CCCGAAGACAATCGA
* * * * *
70821847 GCGAGTTGCTAAATCCGGGCTAATTCTCGAAGGCAATTGTGAGAATTACTATAACCGGGCTATGT
1 GCGAGTTGCTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGAGAATTACCAAAACCGGGCTAAGT
70821912 CCCGAAGACAATCGA
66 CCCGAAGACAATCGA
* *
70821927 GCGAGTCGCTATATCCGG
1 GCGAGTTGCTAAATCCGG
70821945 TTAAATTTCG
Statistics
Matches: 79, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (80 bp):
GCGAGTTGCTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGAGAATTACCAAAACCGGGCTAAGT
CCCGAAGACAATCGA
Found at i:70825992 original size:38 final size:37
Alignment explanation
Indices: 70825950--70826031 Score: 87
Period size: 38 Copynumber: 2.2 Consensus size: 37
70825940 AATTTAGGTA
* *
70825950 AATATTCTA-TTATTTTAAT-AATATTTAATATTAATTTT
1 AATATTATATTTATCTTAATAAATA-TT-ATATTAA-TTT
* *
70825988 AATATAATATTTATCTTGATAAATATTATATTAATTT
1 AATATTATATTTATCTTAATAAATATTATATTAATTT
70826025 AATATTA
1 AATATTA
70826032 AAGTGATTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
37 9 0.24
38 14 0.38
39 10 0.27
40 4 0.11
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (37 bp):
AATATTATATTTATCTTAATAAATATTATATTAATTT
Found at i:70825997 original size:17 final size:17
Alignment explanation
Indices: 70825975--70826032 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
70825965 TAATAATATT
*
70825975 TAATATTAATTTTAATA
1 TAATATTAATATTAATA
* * *
70825992 TAATATTTATCTTGATA
1 TAATATTAATATTAATA
*
70826009 -AATATT-ATATTAATT
1 TAATATTAATATTAATA
70826024 TAATATTAA
1 TAATATTAA
70826033 AGTGATTAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 6 0.18
16 12 0.36
17 15 0.45
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (17 bp):
TAATATTAATATTAATA
Found at i:70826026 original size:5 final size:6
Alignment explanation
Indices: 70825968--70826032 Score: 50
Period size: 6 Copynumber: 11.5 Consensus size: 6
70825958 ATTATTTTAA
* * * *
70825968 TAATATT TAATAT TAATTT TAATA- TAATAT TTATCT TGATA- -AATAT
1 TAATA-T TAATAT TAATAT TAATAT TAATAT TAATAT TAATAT TAATAT
70826014 T-ATAT TAAT-T TAATAT TAA
1 TAATAT TAATAT TAATAT TAA
70826033 AGTGATTAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
4 3 0.07
5 15 0.33
6 23 0.50
7 5 0.11
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (6 bp):
TAATAT
Found at i:70826912 original size:26 final size:26
Alignment explanation
Indices: 70826880--70826931 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
70826870 GGATGAGTGT
70826880 TTGAAATGTGCTATATCACTTCTGAG
1 TTGAAATGTGCTATATCACTTCTGAG
70826906 TTGAAATGTGCTATATCACTTCTGAG
1 TTGAAATGTGCTATATCACTTCTGAG
70826932 GGACTCAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.38
Consensus pattern (26 bp):
TTGAAATGTGCTATATCACTTCTGAG
Found at i:70828932 original size:24 final size:24
Alignment explanation
Indices: 70828902--70829144 Score: 432
Period size: 24 Copynumber: 10.1 Consensus size: 24
70828892 GAATGTGACT
* *
70828902 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
70828926 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
70828950 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
70828974 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
70828998 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
70829022 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
70829046 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
70829070 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
70829094 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
70829118 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
70829142 ATA
1 ATA
70829145 TGGTCTTTGC
Statistics
Matches: 213, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 213 1.00
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:70836944 original size:24 final size:24
Alignment explanation
Indices: 70836914--70837132 Score: 384
Period size: 24 Copynumber: 9.1 Consensus size: 24
70836904 GAATGTGACT
* *
70836914 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
70836938 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
70836962 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
70836986 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
70837010 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
70837034 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
70837058 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
70837082 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
70837106 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
70837130 ATA
1 ATA
70837133 TGGTCTTTGC
Statistics
Matches: 189, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 189 1.00
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:70842632 original size:40 final size:40
Alignment explanation
Indices: 70842587--70842734 Score: 199
Period size: 40 Copynumber: 3.7 Consensus size: 40
70842577 ATAACCACAA
* *
70842587 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
70842627 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * *
70842667 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * * *
70842707 GTATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
70842735 GTATCATTCA
Statistics
Matches: 99, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 97 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:70851496 original size:20 final size:20
Alignment explanation
Indices: 70851471--70851535 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
70851461 GTGCAATTCG
70851471 GGGGTACCAAAGTATAAATA
1 GGGGTACCAAAGTATAAATA
** * * *
70851491 GGGGTACGTATGTGTAATTCA
1 GGGGTACCAAAGTATAAAT-A
* *
70851512 GGGGTACCAAAGTACAAACA
1 GGGGTACCAAAGTATAAATA
70851532 GGGG
1 GGGG
70851536 ATGTAAGTGC
Statistics
Matches: 32, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
20 19 0.59
21 13 0.41
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.20
Consensus pattern (20 bp):
GGGGTACCAAAGTATAAATA
Found at i:70851510 original size:41 final size:41
Alignment explanation
Indices: 70851455--70851595 Score: 158
Period size: 41 Copynumber: 3.5 Consensus size: 41
70851445 AAACTAGGGC
* * *
70851455 ACGTATGTGCAATTCGGGGGTACCAAAGTATAAATAGGGGT
1 ACGTATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGGT
*
70851496 ACGTATGTGTAATTCAGGGGTACCAAAGTACAAACAGGGG-
1 ACGTATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGGT
* * * * ** * *
70851536 ATGTAAGTGCAATTTAAGGGTACTGAAGTACAAACAAGGGC
1 ACGTATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGGT
*
70851577 ACGTATGTGAAATTCAGGG
1 ACGTATGTGCAATTCAGGG
70851596 AATAATTTAC
Statistics
Matches: 82, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 32 0.39
41 50 0.61
ACGTcount: A:0.35, C:0.13, G:0.30, T:0.23
Consensus pattern (41 bp):
ACGTATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGGT
Found at i:70851514 original size:21 final size:21
Alignment explanation
Indices: 70851455--70851518 Score: 58
Period size: 21 Copynumber: 3.1 Consensus size: 21
70851445 AAACTAGGGC
* *
70851455 ACGTATGTGCAATTCGGGGGT
1 ACGTATGTGTAATTCAGGGGT
** * * *
70851476 ACCAAAGTATAAAT-AGGGGT
1 ACGTATGTGTAATTCAGGGGT
70851496 ACGTATGTGTAATTCAGGGGT
1 ACGTATGTGTAATTCAGGGGT
70851517 AC
1 AC
70851519 CAAAGTACAA
Statistics
Matches: 30, Mismatches: 12, Indels: 2
0.68 0.27 0.05
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.27
Consensus pattern (21 bp):
ACGTATGTGTAATTCAGGGGT
Found at i:70853979 original size:23 final size:23
Alignment explanation
Indices: 70853953--70854000 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
70853943 TATGAGATAG
*
70853953 TATGCTTGCGAAAATGATCTCTA
1 TATGCTTGCGAAAATGATCGCTA
*
70853976 TATGCTTGCTAAAATGATCGCTA
1 TATGCTTGCGAAAATGATCGCTA
70853999 TA
1 TA
70854001 ATGACCTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (23 bp):
TATGCTTGCGAAAATGATCGCTA
Found at i:70859580 original size:40 final size:39
Alignment explanation
Indices: 70859536--70859754 Score: 208
Period size: 40 Copynumber: 5.5 Consensus size: 39
70859526 GCTCGATTGT
* *
70859536 CTTCGGGACATAGCCCGGTTATAGTAATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGTT-TAGTAACTCGCACAAATGC
70859576 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * * *
70859616 CTTTGGGACTTAACCTGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGG-TTTAGTAACTCGCACAAATGC
* * *
70859656 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * * *
70859696 CTTCAGGA-ATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGG-TTTAGTAAC-TCGCACAAATGC
*
70859737 CTTCGGGACTTAGCCCGG
1 CTTCGGGACATAGCCCGG
70859755 ATACCATTCG
Statistics
Matches: 151, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 2 0.01
40 123 0.81
41 24 0.16
42 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
CTTCGGGACATAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:70859754 original size:81 final size:80
Alignment explanation
Indices: 70859574--70859756 Score: 231
Period size: 80 Copynumber: 2.3 Consensus size: 80
70859564 TCGCACAATT
* ** * * * *
70859574 GCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGCCTTTGGGACTTAACCTGGTTTTG
1 GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCAGGAATTAACCCGGATTTA
* *
70859639 GTAACTCGCACAAAT
66 GTAACTAGCACAAAA
* * * *
70859654 GCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCAGGAATTGACCCGGATTTA
1 GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCAGGAATTAACCCGGATTTA
*
70859719 GTCACTTAGCACAAAA
66 GTAAC-TAGCACAAAA
70859735 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
70859757 ACCATTCGAA
Statistics
Matches: 86, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
80 58 0.67
81 28 0.33
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCAGGAATTAACCCGGATTTA
GTAACTAGCACAAAA
Found at i:70865239 original size:40 final size:40
Alignment explanation
Indices: 70865193--70865417 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
70865183 CTTGCACAAG
* * *
70865193 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
70865233 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
70865273 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
70865313 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
70865353 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
70865394 GCCTTCGGGACTTAGCCCGAATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
70865418 CATTCGAATA
Statistics
Matches: 158, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.82
41 28 0.18
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:70865288 original size:80 final size:80
Alignment explanation
Indices: 70865157--70865417 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
70865147 CTCAAGTAAT
* * * * * * * *
70865157 CTTCGGGATTTAG-CTGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
70865220 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
70865235 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
70865299 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
70865315 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
70865380 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
*
70865396 CTTCGGGACTTAGCCCGAATAT
1 CTTCGGGACTTAGCCCGGATAT
70865418 CATTCGAATA
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 94 0.61
81 32 0.21
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:70867689 original size:22 final size:22
Alignment explanation
Indices: 70867664--70867714 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
70867654 ATACAAGGTC
*
70867664 ACACGCTTGTGTGGACATAAGG
1 ACACGCCTGTGTGGACATAAGG
* *
70867686 ACACGCCTGTTTGGACATAGGG
1 ACACGCCTGTGTGGACATAAGG
70867708 ACACGCC
1 ACACGCC
70867715 CATGTGCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.20
Consensus pattern (22 bp):
ACACGCCTGTGTGGACATAAGG
Found at i:70869745 original size:50 final size:50
Alignment explanation
Indices: 70869559--70869747 Score: 256
Period size: 50 Copynumber: 3.8 Consensus size: 50
70869549 AAAGTTGATA
* * **
70869559 CCATGTCCCAGACATGGTCTTACACTGGCTCTCGTAT-AAGAGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCGATG
* * * * * *
70869608 CCATGTCCCAGACATGGCCTTAGACTGGCTGTCATCTATC-AGTGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG-GCCGATG
*
70869658 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCGATG
70869708 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
70869748 CCTAGCATCA
Statistics
Matches: 123, Mismatches: 14, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
49 34 0.28
50 87 0.71
51 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.27
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCGATG
Found at i:70872423 original size:15 final size:14
Alignment explanation
Indices: 70872391--70872428 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
70872381 CAAAGATAAC
*
70872391 AAGAAAACCAAGTA
1 AAGAAATCCAAGTA
70872405 AAGAAATCCAAGATA
1 AAGAAATCCAAG-TA
70872420 AAGAAATCC
1 AAGAAATCC
70872429 CGAGATACGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.61, C:0.16, G:0.13, T:0.11
Consensus pattern (14 bp):
AAGAAATCCAAGTA
Found at i:70873693 original size:16 final size:16
Alignment explanation
Indices: 70873674--70873707 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
70873664 TCATATATAG
70873674 ATAAGCTCATTATGCC
1 ATAAGCTCATTATGCC
70873690 ATAAGCTCATTATGCC
1 ATAAGCTCATTATGCC
70873706 AT
1 AT
70873708 GTACACATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (16 bp):
ATAAGCTCATTATGCC
Found at i:70876121 original size:100 final size:99
Alignment explanation
Indices: 70875950--70876232 Score: 338
Period size: 100 Copynumber: 2.8 Consensus size: 99
70875940 AGGTGTCAAC
* * * * * * * **
70875950 GCCATGTCCCAAACATGGTATTACGCTGGATCACA-C-ATCAAAGTCGATGCCATGTCTTAGACA
1 GCCATGTCCCAGACATGGTCTTACACTGGATCTCATCTATC-AGGCCGATGCTATGTCCCAGACA
**
70876013 TGGTCTTACACT-GACTCTCGTATATCGAGGCTGAT
65 TGGTCTTACACTAG-CTCTCACATATCGAGGCTGAT
*
70876048 GCCATGTCCCAGACATGGTCTTACACTGGATCTCATCTATTAGTGCCGATGCTATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACACTGGATCTCATCTATCAG-GCCGATGCTATGTCCCAGACA
* *
70876113 TGGTCTTACACTAGGTCTCACATCTCGAGGCTGAT
65 TGGTCTTACACTAGCTCTCACATATCGAGGCTGAT
* * * * *
70876148 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCGATGCTATGTCCCAAACA
1 GCCATGTCCCAGACATGGTCTTACACTGGATCTCATCTATC-AGGCCGATGCTATGTCCCAGACA
70876213 TGGTCTTACACTAGCTCTCA
65 TGGTCTTACACTAGCTCTCA
70876233 TATCTCCCTA
Statistics
Matches: 159, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
98 31 0.19
99 2 0.01
100 123 0.77
101 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (99 bp):
GCCATGTCCCAGACATGGTCTTACACTGGATCTCATCTATCAGGCCGATGCTATGTCCCAGACAT
GGTCTTACACTAGCTCTCACATATCGAGGCTGAT
Found at i:70876236 original size:50 final size:50
Alignment explanation
Indices: 70875994--70876238 Score: 314
Period size: 50 Copynumber: 4.9 Consensus size: 50
70875984 ACATCAAAGT
** * *
70875994 CGATGCCATGTCTTAGACATGGTCTTACACT-GACTCTCGTATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATCTCGAGGC
* * * * * *
70876044 TGATGCCATGTCCCAGACATGGTCTTACACTGGATCTCATCTAT-TAGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG-GC
* * *
70876094 CGATGCTATGTCCCAGACATGGTCTTACACTAGGTCTCACATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGC
*
70876144 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGC
* *
70876194 CGATGCTATGTCCCAAACATGGTCTTACACTAGCTCTCATATCTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
70876239 CCTAGCATCA
Statistics
Matches: 170, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
49 2 0.01
50 165 0.97
51 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGC
Found at i:70880004 original size:41 final size:40
Alignment explanation
Indices: 70879947--70880174 Score: 165
Period size: 41 Copynumber: 5.6 Consensus size: 40
70879937 GTGTAAACCG
* * * *
70879947 GGGCACGTATGTGCAATTCGAGGGTTTCGAAGTACGAACAT
1 GGGCACGTATGTGCAATTC-AGGGTATCAAAGTACAAACAA
* *
70879988 GGGCATGTATGTGCAATTTAAGGGTATCAAAGTACAAACAA
1 GGGCACGTATGTGCAA-TTCAGGGTATCAAAGTACAAACAA
* * * * *
70880029 GGGCACATATGTGTAATTCAGGGGTACCAAAGTA-ACACCAG
1 GGGCACGTATGTGCAATTCA-GGGTATCAAAGTACA-AACAA
* * *
70880070 GGGCACATATGTGCAATTAATGGGT-TCCAAAGTACAAACAG
1 GGGCACGTATGTGCAATTCA-GGGTAT-CAAAGTACAAACAA
* * * * * * *
70880111 GGGCACATATGTGTC-ATTTAGGGGTACCGAATTATAAACAG
1 GGGCACGTATGTG-CAATTCA-GGGTATCAAAGTACAAACAA
*
70880152 GGGCATGTATGTGCAATTCAGGG
1 GGGCACGTATGTGCAATTCAGGG
70880175 AATAATTAAC
Statistics
Matches: 152, Mismatches: 27, Indels: 17
0.78 0.14 0.09
Matches are distributed among these distances:
40 8 0.05
41 140 0.92
42 4 0.03
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (40 bp):
GGGCACGTATGTGCAATTCAGGGTATCAAAGTACAAACAA
Found at i:70880084 original size:82 final size:83
Alignment explanation
Indices: 70879995--70880169 Score: 232
Period size: 82 Copynumber: 2.1 Consensus size: 83
70879985 CATGGGCATG
70879995 TATGTGCAATTTAA-GGGTAT-CAAAGTACAAACAAGGGCACATATGTGTAATTCAGGGGTACCA
1 TATGTGCAATTTAATGGGT-TCCAAAGTACAAACAAGGGCACATATGTGTAATTCAGGGGTACCA
*
70880058 AAGTA-ACACCAGGGGCACA
65 AAGTATA-AACAGGGGCACA
* * * *
70880077 TATGTGCAA-TTAATGGGTTCCAAAGTACAAACAGGGGCACATATGTGTCATTTAGGGGTACCGA
1 TATGTGCAATTTAATGGGTTCCAAAGTACAAACAAGGGCACATATGTGTAATTCAGGGGTACCAA
* **
70880141 ATTATAAACAGGGGCATG
66 AGTATAAACAGGGGCACA
70880159 TATGTGCAATT
1 TATGTGCAATT
70880170 CAGGGAATAA
Statistics
Matches: 81, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
81 5 0.06
82 74 0.91
83 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (83 bp):
TATGTGCAATTTAATGGGTTCCAAAGTACAAACAAGGGCACATATGTGTAATTCAGGGGTACCAA
AGTATAAACAGGGGCACA
Found at i:70880150 original size:123 final size:121
Alignment explanation
Indices: 70879939--70880174 Score: 269
Period size: 123 Copynumber: 1.9 Consensus size: 121
70879929 TTACCGGAGT
* * * * * * **
70879939 GTAAACCGGGGCACGTATGTGCAATTCGAGGGTTTCGAAGTACGAACATGGGCATGTATGTGCAA
1 GTAAACCGGGGCACATATGTGCAATTCAAGGGTTCCAAAGTACAAACAGGGGCACATATGTGCAA
* *
70880004 TTTAAGGGTATCAAAGTACAAACAAGGGCACATATGTGTAATTCAGGGGTACCAAA
66 TTTAAGGGTACCAAAGTACAAACAAGGGCACATATGTGCAATTCAGGGGTACCAAA
70880060 GTAACACCAGGGGCACATATGTGCAATT-AATGGGTTCCAAAGTACAAACAGGGGCACATATGTG
1 GTAA-ACC-GGGGCACATATGTGCAATTCAA-GGGTTCCAAAGTACAAACAGGGGCACATATGTG
* * * * * **
70880124 TC-ATTTAGGGGTACCGAATTATAAACAGGGGCATGTATGTGCAATTCAGGG
63 -CAATTTAAGGGTACCAAAGTACAAACAAGGGCACATATGTGCAATTCAGGG
70880175 AATAATTAAC
Statistics
Matches: 94, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
121 4 0.04
122 4 0.04
123 85 0.90
124 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (121 bp):
GTAAACCGGGGCACATATGTGCAATTCAAGGGTTCCAAAGTACAAACAGGGGCACATATGTGCAA
TTTAAGGGTACCAAAGTACAAACAAGGGCACATATGTGCAATTCAGGGGTACCAAA
Found at i:70880282 original size:58 final size:58
Alignment explanation
Indices: 70880192--70880302 Score: 204
Period size: 58 Copynumber: 1.9 Consensus size: 58
70880182 AACTATAAGT
70880192 ATTTAATTACATAACTATAATGTGAAAATACATGTAAAAATTCCATTATATAGTGAGA
1 ATTTAATTACATAACTATAATGTGAAAATACATGTAAAAATTCCATTATATAGTGAGA
* *
70880250 ATTTAATTGCATAACTGTAATGTGAAAATACATGTAAAAATTCCATTATATAG
1 ATTTAATTACATAACTATAATGTGAAAATACATGTAAAAATTCCATTATATAG
70880303 AGAAATACGA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.35
Consensus pattern (58 bp):
ATTTAATTACATAACTATAATGTGAAAATACATGTAAAAATTCCATTATATAGTGAGA
Found at i:70882976 original size:27 final size:27
Alignment explanation
Indices: 70882946--70883037 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
70882936 ATTACCAAAG
* * *
70882946 TACCCTCGATTTATAGAATCACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
70882973 TACCCTTGATTTACATAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* **
70883000 TAACCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
70883027 TACCCTCGATT
1 TACCCTCGATT
70883038 GTGAAATTAC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:70883059 original size:27 final size:27
Alignment explanation
Indices: 70883029--70883170 Score: 96
Period size: 27 Copynumber: 5.3 Consensus size: 27
70883019 TACCATTTTA
**
70883029 CCCTCGATTGTGAAATTACTTAAATAC
1 CCCTCGATTGTGAAATTACCAAAATAC
* * *
70883056 CCCT--ATAGGGTAGAATTGCCAAAATAC
1 CCCTCGATTGTG-A-AATTACCAAAATAC
* *
70883083 CCCTCGTTTGTAAAATTACCAAAATAC
1 CCCTCGATTGTGAAATTACCAAAATAC
* * * **
70883110 CACTGGTTTG-GAAATTACTGAAATA-
1 CCCTCGATTGTGAAATTACCAAAATAC
* *
70883135 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCTCGA-TTGTGAAATTACCAAAATAC
70883163 CCCT-GATT
1 CCCTCGATT
70883171 TACAAAATTA
Statistics
Matches: 85, Mismatches: 23, Indels: 15
0.69 0.19 0.12
Matches are distributed among these distances:
25 7 0.08
26 18 0.21
27 53 0.62
28 5 0.06
29 2 0.02
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.30
Consensus pattern (27 bp):
CCCTCGATTGTGAAATTACCAAAATAC
Found at i:70883171 original size:27 final size:28
Alignment explanation
Indices: 70883069--70883180 Score: 108
Period size: 27 Copynumber: 4.2 Consensus size: 28
70883059 TATAGGGTAG
*
70883069 AATTGCCAAAATACCCCTCG-TTTGTAA
1 AATTACCAAAATACCCCTCGATTTGTAA
* * *
70883096 AATTACCAAAATACCACT-GGTTTG-GA
1 AATTACCAAAATACCCCTCGATTTGTAA
** *
70883122 AATTACTGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCTCGATTTGTAA
**
70883149 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTCGATTTGTAA
70883176 AATTA
1 AATTA
70883181 TAGAAATACC
Statistics
Matches: 67, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
25 3 0.04
26 17 0.25
27 43 0.64
28 4 0.06
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.29
Consensus pattern (28 bp):
AATTACCAAAATACCCCTCGATTTGTAA
Found at i:70883178 original size:80 final size:81
Alignment explanation
Indices: 70883003--70883180 Score: 193
Period size: 80 Copynumber: 2.2 Consensus size: 81
70882993 ACTGTTTTAA
*** * *
70883003 CCTCGATTTACAAAATTACCATTTTACCCTCGATTGTGAAATTACTTAAATACCCCTATAGGGTA
1 CCTCGATTTACAAAATTACCAAAATACCCTCGATTGTGAAATTACTGAAATACCCCAATAGGGTA
* *
70883068 GAATTGCCAAAATACC
66 AAATTACCAAAATACC
** * * **
70883084 CCTCG-TTTGTAAAATTACCAAAATACCACTGGTTTG-GAAATTACTGAAATACCCTCAAT-TTG
1 CCTCGATTTACAAAATTACCAAAATACC-CTCGATTGTGAAATTACTGAAATACCC-CAATAGGG
70883146 TAAAATTACCAAAATACC
64 TAAAATTACCAAAATACC
70883164 CCT-GATTTACAAAATTA
1 CCTCGATTTACAAAATTA
70883181 TAGAAATACC
Statistics
Matches: 79, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
79 1 0.01
80 64 0.81
81 14 0.18
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (81 bp):
CCTCGATTTACAAAATTACCAAAATACCCTCGATTGTGAAATTACTGAAATACCCCAATAGGGTA
AAATTACCAAAATACC
Found at i:70883254 original size:27 final size:27
Alignment explanation
Indices: 70883121--70883250 Score: 113
Period size: 27 Copynumber: 4.7 Consensus size: 27
70883111 ACTGGTTTGG
** **
70883121 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTTGATTTACA
** *
70883148 AAATTACCAAAATACCCCTGATTTACA
1 AAATTACTGAAATACCCTTGATTTACA
70883175 AAATTA-TAGAAATACCCTTGACTTT-CTAA
1 AAATTACT-GAAATACCCTTGA-TTTAC--A
* *
70883204 AAATTA-TAGAAATACCATTGGTTTACA
1 AAATTACT-GAAATACCCTTGATTTACA
70883231 AAATTACTGAAATACCCTTG
1 AAATTACTGAAATACCCTTG
70883251 GTTTGTAGAT
Statistics
Matches: 84, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
27 56 0.67
28 7 0.08
29 21 0.25
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTTGATTTACA
Found at i:70883338 original size:27 final size:26
Alignment explanation
Indices: 70883308--70883367 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
70883298 ACCCCTAATA
*
70883308 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCATAAA-CCCCTGTAG
** * *
70883335 GGTAAAGTGACCATATACCCCTGTAT
1 GGTAAAAAGACCATAAACCCCTGTAG
70883361 GGTAAAA
1 GGTAAAA
70883368 TGACGAATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (26 bp):
GGTAAAAAGACCATAAACCCCTGTAG
Found at i:70883382 original size:26 final size:26
Alignment explanation
Indices: 70883326--70883377 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
70883316 GACCGTAAAG
* * *
70883326 CCCCTGTAGGGTAAAGTGACCATATA
1 CCCCTGTATGGTAAAATGACAATATA
70883352 CCCCTGTATGGTAAAATGACGAATAT
1 CCCCTGTATGGTAAAATGAC-AATAT
70883378 GCCCTTATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CCCCTGTATGGTAAAATGACAATATA
Found at i:70884141 original size:16 final size:16
Alignment explanation
Indices: 70884120--70884150 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70884110 CAAATATGGG
*
70884120 CATGACATTTTGCATA
1 CATGACATGTTGCATA
70884136 CATGACATGTTGCAT
1 CATGACATGTTGCAT
70884151 GGGTTGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:70884500 original size:31 final size:30
Alignment explanation
Indices: 70884445--70884527 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 30
70884435 CGCTTACAGT
* *
70884445 AAAGGCTTTGG-CCAGAAATATGATTTATGA
1 AAAGGCTTCGGCCCAG-TATATGATTTATGA
70884475 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGT-ATATGATTTATGA
70884506 AAAGGCTTCGGCCCAGTATATG
1 AAAGGCTTCGGCCCAGTATATG
70884528 TCGAGACTGA
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
30 15 0.31
31 34 0.69
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGATTTATGA
Found at i:70886621 original size:30 final size:30
Alignment explanation
Indices: 70886575--70886635 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
70886565 TTCCCGAGCC
70886575 TAGGGGAAAAAGTGTAA-ATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATAT-TGCAAAAGTT
* * *
70886605 TAGGGGCAAAATTGTAATATTGTAAAAGTT
1 TAGGGGAAAAAGTGTAATATTGCAAAAGTT
70886635 T
1 T
70886636 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.43, C:0.03, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATATTGCAAAAGTT
Found at i:70892263 original size:289 final size:289
Alignment explanation
Indices: 70891744--70892321 Score: 1102
Period size: 289 Copynumber: 2.0 Consensus size: 289
70891734 TCATTATTAG
70891744 GATAGTGTGAACTTCGGATGATTCATTTGACATGTTCCGCAAGTTGGAAATCTACAGGAAATGGG
1 GATAGTGTGAACTTCGGATGATTCATTTGACATGTTCCGCAAGTTGGAAATCTACAGGAAATGGG
70891809 AAAAACAAATAAGGTAAGCATATACAATGCTTGGTAAGTTCACAAGTATTAATCCAAGTAACTTA
66 AAAAACAAATAAGGTAAGCATATACAATGCTTGGTAAGTTCACAAGTATTAATCCAAGTAACTTA
70891874 CCTTAGGTTTAAATTATACACTACATGATACTTAGATTGTTAAAGTTTGCCTATCATGGCAAATC
131 CCTTAGGTTTAAATTATACACTACATGATACTTAGATTGTTAAAGTTTGCCTATCATGGCAAATC
*
70891939 AAATATAAAAAAGGTGTGTCAAACATTTATTAGACCATATAGTAACTTAATCATATAACCTTTCA
196 AAATATAAAAAAGGTATGTCAAACATTTATTAGACCATATAGTAACTTAATCATATAACCTTTCA
*
70892004 ATTCACTGATACAACATATCATTACCATA
261 ATTCACTAATACAACATATCATTACCATA
*
70892033 GATAGTGTGAACTTTGGATGATTCATTTGACATGTTCCGCAAGTTGGAAATCTACAGGAAATGGG
1 GATAGTGTGAACTTCGGATGATTCATTTGACATGTTCCGCAAGTTGGAAATCTACAGGAAATGGG
70892098 AAAAACAAATAAGGTAAGCATATACAATGCTTGGTAAGTTCACAAGTATTAATCCAAGTAACTTA
66 AAAAACAAATAAGGTAAGCATATACAATGCTTGGTAAGTTCACAAGTATTAATCCAAGTAACTTA
70892163 CCTTAGGTTTAAATTATACACTACATGATACTTAGATTGTTAAAGTTTGCCTATCATGGCAAATC
131 CCTTAGGTTTAAATTATACACTACATGATACTTAGATTGTTAAAGTTTGCCTATCATGGCAAATC
*
70892228 AAATATAAAAAAGGTATGTCAAATATTTATTAGACCATATAGTAACTTAATCATATAACCTTTCA
196 AAATATAAAAAAGGTATGTCAAACATTTATTAGACCATATAGTAACTTAATCATATAACCTTTCA
* *
70892293 ATTCACTAATACATCATTTCATTACCATA
261 ATTCACTAATACAACATATCATTACCATA
70892322 CACAAAAAAA
Statistics
Matches: 283, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
289 283 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (289 bp):
GATAGTGTGAACTTCGGATGATTCATTTGACATGTTCCGCAAGTTGGAAATCTACAGGAAATGGG
AAAAACAAATAAGGTAAGCATATACAATGCTTGGTAAGTTCACAAGTATTAATCCAAGTAACTTA
CCTTAGGTTTAAATTATACACTACATGATACTTAGATTGTTAAAGTTTGCCTATCATGGCAAATC
AAATATAAAAAAGGTATGTCAAACATTTATTAGACCATATAGTAACTTAATCATATAACCTTTCA
ATTCACTAATACAACATATCATTACCATA
Found at i:70898926 original size:22 final size:23
Alignment explanation
Indices: 70898901--70898946 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
70898891 CAACCAAATC
70898901 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
70898923 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
70898946 A
1 A
70898947 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:70898952 original size:23 final size:23
Alignment explanation
Indices: 70898908--70898952 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
70898898 ATCAATTCAA
*
70898908 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
70898931 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
70898953 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:70903315 original size:58 final size:59
Alignment explanation
Indices: 70903238--70903369 Score: 169
Period size: 61 Copynumber: 2.2 Consensus size: 59
70903228 ATCACTTTAA
* * *
70903238 TATTAAATTAATATAATACTTA-ACATGATAAATATTAGAA-TAAATTTAATAATAAATC
1 TATTAAATTAATAGAATACTTATACAAGATAAATATTA-AATTAAATTTAATAATAAAAC
*
70903296 TATTAAATTAATAGAATACTTATCTACAAGATAAATATTAAATTAAATTTAATATTAAAAC
1 TATTAAATTAATAGAATACTTA--TACAAGATAAATATTAAATTAAATTTAATAATAAAAC
* *
70903357 TACTAAAATAATA
1 TATTAAATTAATA
70903370 TTATTTTTGA
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
58 21 0.33
60 2 0.03
61 41 0.64
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (59 bp):
TATTAAATTAATAGAATACTTATACAAGATAAATATTAAATTAAATTTAATAATAAAAC
Found at i:70904404 original size:41 final size:41
Alignment explanation
Indices: 70904346--70904463 Score: 209
Period size: 41 Copynumber: 2.9 Consensus size: 41
70904336 CGTTTTTTAG
* * *
70904346 AAAAAGCGCCGCTAAAGACCAGGACCTTTAGTGGCGCTCTT
1 AAAAAACGCCGCCAAAGACCAGGACCTTTAGCGGCGCTCTT
70904387 AAAAAACGCCGCCAAAGACCAGGACCTTTAGCGGCGCTCTT
1 AAAAAACGCCGCCAAAGACCAGGACCTTTAGCGGCGCTCTT
70904428 AAAAAACGCCGCCAAAGACCAGGACCTTTAGCGGCG
1 AAAAAACGCCGCCAAAGACCAGGACCTTTAGCGGCG
70904464 TTTTTTTAAA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.32, C:0.30, G:0.24, T:0.14
Consensus pattern (41 bp):
AAAAAACGCCGCCAAAGACCAGGACCTTTAGCGGCGCTCTT
Found at i:70904674 original size:44 final size:43
Alignment explanation
Indices: 70904453--70904701 Score: 175
Period size: 44 Copynumber: 5.7 Consensus size: 43
70904443 AGACCAGGAC
* * * * *
70904453 CTTTAGCGGCGTTTTTTTAAAAAAGCACCACTAATGTTCTTGGT
1 CTTTAGCGGCGCTTTTATAAAAAA-CGCCGCTAAAGTTCTTGGT
* * *
70904497 CTATAGCGGCGTTTTTTTACTAAAAA-GCCGCTAAAGTTCTTGGT
1 CTTTAGCGGCGCTTTTATA--AAAAACGCCGCTAAAGTTCTTGGT
* * * * * * *
70904541 CTATAGCGGCGCTTTTGTAAAAAACGCAGCCAAAGATC-AGGAC
1 CTTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGTTCTTGG-T
* * *** ** **
70904584 CTTTAGTGGCGCTTTTAT-AAAAACGCCGCTATACACCAAGAA
1 CTTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGTTCTTGGT
*
70904626 CTTTAGCGGCGCTTTTATAAAAAAACGCCGCTACAGGTTC-TGGT
1 CTTTAGCGGCGCTTTTAT-AAAAAACGCCGCTA-AAGTTCTTGGT
70904670 CTTTAGCGGCGC-TTTAGTAAAAAACGCCGCTA
1 CTTTAGCGGCGCTTTTA-TAAAAAACGCCGCTA
70904702 TAGTCCAAGA
Statistics
Matches: 166, Mismatches: 30, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
42 38 0.23
43 45 0.27
44 77 0.46
45 1 0.01
46 5 0.03
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGTTCTTGGT
Found at i:70904719 original size:87 final size:86
Alignment explanation
Indices: 70904584--70904745 Score: 236
Period size: 87 Copynumber: 1.9 Consensus size: 86
70904574 AGATCAGGAC
* * *
70904584 CTTTAGTGGCGCTTTTATAAAAACGCCGCTATACACCAAGAACTTTAGCGGCGCTTTTATAAAAA
1 CTTTAGCGGCGCTTTTATAAAAACGCCGCTATACACCAAGAACATTAGCGACGCTTTTATAAAAA
70904649 AACGCCGCTACAGGTTCTGGT
66 AACGCCGCTACAGGTTCTGGT
** *
70904670 CTTTAGCGGCGC-TTTAGTAAAAAACGCCGCTATAGTCCAAGAACATTAGCGACGCTTTTTTAAA
1 CTTTAGCGGCGCTTTTA-T-AAAAACGCCGCTATACACCAAGAACATTAGCGACGCTTTTATAAA
*
70904734 AAAATGCCGCTA
64 AAAACGCCGCTA
70904746 ATTTGCCCAG
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
85 4 0.06
86 12 0.18
87 51 0.76
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (86 bp):
CTTTAGCGGCGCTTTTATAAAAACGCCGCTATACACCAAGAACATTAGCGACGCTTTTATAAAAA
AACGCCGCTACAGGTTCTGGT
Found at i:70904726 original size:129 final size:129
Alignment explanation
Indices: 70904500--70904735 Score: 289
Period size: 129 Copynumber: 1.8 Consensus size: 129
70904490 TCTTGGTCTA
* * * *
70904500 TAGCGGCGTTTTTTTACTAAAAAGCCGCTAAAGTTCTTGGTCTATAGCGGCGCTTTTGTAAAAAA
1 TAGCGGCGCTTTTATACAAAAAAGCCGCTAAAGTTCTTGGTCTATAGCGGCGCTTTAGTAAAAAA
* * * * *
70904565 CGCAGCCAAAGATCAGGACCTTTAGTGGCGCTTTTATAAAAACGCCGCTATACACCAAGAACTT
66 CGCAGCCAAAGATCAAGAACATTAGCGACGCTTTTATAAAAACGCCGCTATACACCAAGAACTT
* *
70904629 TAGCGGCGCTTTTATA-AAAAAACGCCGCTACAGGTTC-TGGTCTTTAGCGGCGCTTTAGTAAAA
1 TAGCGGCGCTTTTATACAAAAAA-GCCGCTA-AAGTTCTTGGTCTATAGCGGCGCTTTAGTAAAA
* * * *
70904692 AACGCCGCTATAG-TCCAAGAACATTAGCGACGCTTTTTTAAAAA
64 AACGCAGCCAAAGAT-CAAGAACATTAGCGACGCTTTTATAAAAA
70904736 AATGCCGCTA
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
128 6 0.07
129 78 0.88
130 5 0.06
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (129 bp):
TAGCGGCGCTTTTATACAAAAAAGCCGCTAAAGTTCTTGGTCTATAGCGGCGCTTTAGTAAAAAA
CGCAGCCAAAGATCAAGAACATTAGCGACGCTTTTATAAAAACGCCGCTATACACCAAGAACTT
Found at i:70904736 original size:44 final size:44
Alignment explanation
Indices: 70904544--70904745 Score: 155
Period size: 44 Copynumber: 4.7 Consensus size: 44
70904534 TCTTGGTCTA
* * * * * *
70904544 TAGCGGCGCTTTTGT-AAAAAACGCAGCCAAAGAT-CAGGACCTT
1 TAGCGGCGCTTTTTTAAAAAAACGCCGCTATAG-TCCAAGAACTT
* * **
70904587 TAGTGGCGC--TTTTATAAAAACGCCGCTATACACCAAGAACTT
1 TAGCGGCGCTTTTTTAAAAAAACGCCGCTATAGTCCAAGAACTT
* * * * **
70904629 TAGCGGCGCTTTTATAAAAAAACGCCGCTACAGGTTC-TGGTCTT
1 TAGCGGCGCTTTTTTAAAAAAACGCCGCTATA-GTCCAAGAACTT
** *
70904673 TAGCGGCGCTTTAGT-AAAAAACGCCGCTATAGTCCAAGAACAT
1 TAGCGGCGCTTTTTTAAAAAAACGCCGCTATAGTCCAAGAACTT
* *
70904716 TAGCGACGCTTTTTTAAAAAAATGCCGCTA
1 TAGCGGCGCTTTTTTAAAAAAACGCCGCTA
70904746 ATTTGCCCAG
Statistics
Matches: 120, Mismatches: 32, Indels: 13
0.73 0.19 0.08
Matches are distributed among these distances:
41 3 0.03
42 30 0.25
43 38 0.32
44 48 0.40
45 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (44 bp):
TAGCGGCGCTTTTTTAAAAAAACGCCGCTATAGTCCAAGAACTT
Found at i:70905066 original size:21 final size:21
Alignment explanation
Indices: 70905042--70905086 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
70905032 TCCTGTTCTG
70905042 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
70905063 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
70905084 CTC
1 CTC
70905087 TGCTCTAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.00, C:0.58, G:0.18, T:0.24
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTGC
Found at i:70905674 original size:18 final size:18
Alignment explanation
Indices: 70905642--70905679 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
70905632 TACAATATAG
70905642 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
70905661 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
70905678 TA
1 TA
70905680 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:70911251 original size:21 final size:21
Alignment explanation
Indices: 70911227--70911266 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
70911217 AAATTAATTC
*
70911227 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
70911248 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
70911267 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:70913448 original size:133 final size:133
Alignment explanation
Indices: 70913210--70913461 Score: 486
Period size: 133 Copynumber: 1.9 Consensus size: 133
70913200 GAATTCAACA
*
70913210 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACATGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
*
70913275 TAAGTTGGATAGAAACATGAAAACAGACCAAAATAACATCTAAATAACCAAAATATAACAATTTT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
70913340 ATT
131 ATT
70913343 ATATAAAACATGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACATGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
70913408 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
70913462 GGAATCACCA
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 117 1.00
ACGTcount: A:0.52, C:0.19, G:0.10, T:0.20
Consensus pattern (133 bp):
ATATAAAACATGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
ATT
Found at i:70916840 original size:2 final size:2
Alignment explanation
Indices: 70916833--70916861 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
70916823 ACAAATTAAA
70916833 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
70916862 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:70917194 original size:36 final size:38
Alignment explanation
Indices: 70917153--70917228 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 38
70917143 CTTCAATTAC
* * *
70917153 TAGTTAACTCCTAAACC-G-TAAATCTTAAACCATATA
1 TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
70917189 TAGTTAACTCATAAACCTGCTTAAACCCTAAACCATATA
1 TAGTTAACTCATAAACCTGC-TAAACCCTAAACCATATA
70917228 T
1 T
70917229 CTTAAACTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 16 0.47
37 1 0.03
39 17 0.50
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (38 bp):
TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
Found at i:70917454 original size:41 final size:41
Alignment explanation
Indices: 70917408--70917791 Score: 517
Period size: 41 Copynumber: 9.4 Consensus size: 41
70917398 GTTCTATGAC
*
70917408 TTTTAGTGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* *
70917449 TTTTAGCGGCGTTTTACAC-AAAACGCTGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTAC-CGAAAGCGCCGCTAATGCTCTGGT
* *
70917490 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGTT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * *
70917531 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGATCTGTT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* *
70917572 TTTTAACGGCGTTTTACCCAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
70917613 TTTTAGCGGCGTTTTACCCG-AAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTA-CCGAAAGCGCCGCTAATGCTCTGGT
* *
70917654 TTTTAGCGGCGTTTTACCCG-AAGCGCCACTAATACTCTGGT
1 TTTTAGCGGCGTTTTA-CCGAAAGCGCCGCTAATGCTCTGGT
*
70917695 TTTTAGCGGCGTTTTACCCG-AAGCGCCGCTAATGATCTGGT
1 TTTTAGCGGCGTTTTA-CCGAAAGCGCCGCTAATGCTCTGGT
* * * * *
70917736 TTTTAGTGGCGTTTTACCTAAAGTGCCGCTAATGATAT-GT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* *
70917776 TTTTAGAGGCATTTTA
1 TTTTAGCGGCGTTTTA
70917792 GTAAAAAACG
Statistics
Matches: 313, Mismatches: 26, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
40 18 0.06
41 292 0.93
42 3 0.01
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
Found at i:70920839 original size:25 final size:25
Alignment explanation
Indices: 70920810--70920857 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70920800 TTATAATATG
* * *
70920810 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
70920835 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
70920858 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:70920926 original size:20 final size:20
Alignment explanation
Indices: 70920901--70920959 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
70920891 TAAATATGGT
70920901 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
70920921 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
70920941 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
70920960 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:70920941 original size:11 final size:11
Alignment explanation
Indices: 70920905--70920959 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
70920895 TATGGTATGT
70920905 ATGATATGCAC
1 ATGATATGCAC
* *
70920916 ATGAAATG--T
1 ATGATATGCAC
70920925 ATGATATGCAC
1 ATGATATGCAC
*
70920936 ATGATATG--T
1 ATGATATGCAC
70920945 ATGATATGCAC
1 ATGATATGCAC
70920956 ATGA
1 ATGA
70920960 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:70921037 original size:24 final size:24
Alignment explanation
Indices: 70921010--70921128 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
70921000 GAGGAAGTGA
*
70921010 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
70921034 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
70921057 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
70921081 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
70921105 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
70921129 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:70921079 original size:47 final size:48
Alignment explanation
Indices: 70921010--70921128 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
70921000 GAGGAAGTGA
70921010 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
70921057 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
70921105 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
70921129 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:70921358 original size:31 final size:31
Alignment explanation
Indices: 70921320--70921383 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
70921310 CATTTACAAT
70921320 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
70921351 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70921382 AA
1 AA
70921384 CATGAAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:70928567 original size:2 final size:2
Alignment explanation
Indices: 70928560--70928585 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
70928550 ACCATCAATC
70928560 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
70928586 TCTTCTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70928846 original size:39 final size:38
Alignment explanation
Indices: 70928763--70928859 Score: 97
Period size: 39 Copynumber: 2.5 Consensus size: 38
70928753 CTTGAAACCA
*
70928763 ATTACCAGCACAAGCCTGCAGGAATTTAAACCCAGTAT
1 ATTACCAGCACAAGCCTGCAGGAATTTAAACCCAGCAT
* * * * *
70928801 AATACCAGCTCAAAGCCTGCAGGACTTT-AGCCCGGACAT
1 ATTACCAGCAC-AAGCCTGCAGGAATTTAAACCCAG-CAT
*
70928840 ATTACCAGCACGTAGCCTGC
1 ATTACCAGCAC-AAGCCTGC
70928860 GGACCTTAAG
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
38 14 0.30
39 33 0.70
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.20
Consensus pattern (38 bp):
ATTACCAGCACAAGCCTGCAGGAATTTAAACCCAGCAT
Found at i:70928880 original size:78 final size:78
Alignment explanation
Indices: 70928798--70928952 Score: 197
Period size: 78 Copynumber: 2.0 Consensus size: 78
70928788 TTAAACCCAG
* * * *
70928798 TATAATACCAGCTCAAAGCCTGCAGGA-CTTTAGCCCGGACAT-ATTACCAGCACGTAGCCTGCG
1 TATAATACCAGCACAAAGCCTGC-GGACCCTAAGCCCGGACATAATT-CCAGCACATAGCCTGCG
*
70928861 GACCTTAAGTCCGGT
64 GACCCTAAGTCCGGT
* * * *
70928876 TATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TATAATACCAGCACAAAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
70928941 CCCTAAGTCCGG
66 CCCTAAGTCCGG
70928953 ATAAATATCA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 3 0.05
78 60 0.91
79 3 0.05
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (78 bp):
TATAATACCAGCACAAAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
CCCTAAGTCCGGT
Found at i:70928887 original size:39 final size:39
Alignment explanation
Indices: 70928844--70928955 Score: 197
Period size: 39 Copynumber: 2.9 Consensus size: 39
70928834 GGACATATTA
* * *
70928844 CCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAATT
1 CCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
70928883 CCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
1 CCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
70928922 CCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 CCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
70928956 AATATCACTG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (39 bp):
CCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
Found at i:70929516 original size:2 final size:2
Alignment explanation
Indices: 70929509--70929553 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
70929499 ATTTAAACAC
70929509 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
70929551 TA T
1 TA T
70929554 TCCCTACTCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:70931611 original size:26 final size:26
Alignment explanation
Indices: 70931575--70931627 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
70931565 ATGGTAAATG
70931575 CATTTTCTTGAGAAGGCAAAAGATGA
1 CATTTTCTTGAGAAGGCAAAAGATGA
70931601 CATTTTCTTGAGAAGGCAAAAGATGA
1 CATTTTCTTGAGAAGGCAAAAGATGA
70931627 C
1 C
70931628 TTGGGATTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (26 bp):
CATTTTCTTGAGAAGGCAAAAGATGA
Found at i:70934055 original size:20 final size:20
Alignment explanation
Indices: 70934020--70934057 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70934010 TCTCTAAAAT
* *
70934020 ATTTTAGATTTCATAAGTGA
1 ATTTTAGATATAATAAGTGA
70934040 ATTTTAGATATAATAAGT
1 ATTTTAGATATAATAAGT
70934058 ATTTTGTAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (20 bp):
ATTTTAGATATAATAAGTGA
Found at i:70936476 original size:31 final size:31
Alignment explanation
Indices: 70936441--70936503 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
70936431 GGAAGAAAGC
70936441 AATTTAGAATATTTTAGAGATATTAATATGG
1 AATTTAGAATATTTTAGAGATATTAATATGG
70936472 AATTTAGAATATTTTAGAGATATTAATATGG
1 AATTTAGAATATTTTAGAGATATTAATATGG
70936503 A
1 A
70936504 TAACGTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.43, C:0.00, G:0.16, T:0.41
Consensus pattern (31 bp):
AATTTAGAATATTTTAGAGATATTAATATGG
Found at i:70937630 original size:12 final size:12
Alignment explanation
Indices: 70937613--70937645 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
70937603 CATTGTTCTT
70937613 CATTTTCTTCCC
1 CATTTTCTTCCC
70937625 CATTTTCTTCCC
1 CATTTTCTTCCC
*
70937637 CATTCTCTT
1 CATTTTCTT
70937646 GCCAATTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.39, G:0.00, T:0.52
Consensus pattern (12 bp):
CATTTTCTTCCC
Found at i:70940848 original size:35 final size:35
Alignment explanation
Indices: 70940799--70940867 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
70940789 CCAGAAAGTA
70940799 AGCAAAATTGCTAAAGAACACAATAAAGACTAGCC
1 AGCAAAATTGCTAAAGAACACAATAAAGACTAGCC
*
70940834 AGCAAAATTTCTAAAGAACACAATAAAGACTAGC
1 AGCAAAATTGCTAAAGAACACAATAAAGACTAGC
70940868 TACCGAATCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.52, C:0.19, G:0.13, T:0.16
Consensus pattern (35 bp):
AGCAAAATTGCTAAAGAACACAATAAAGACTAGCC
Found at i:70943098 original size:36 final size:36
Alignment explanation
Indices: 70943057--70943130 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
70943047 TATGTACACC
*
70943057 TAGCTTACCTTATGATAATTCAAGTGAATTATGTGT
1 TAGCTTACCTTATGATAATTCAAGTGAATTATCTGT
70943093 TAGCTTACCTTATGATAATTCAAGTGAATTATCTGT
1 TAGCTTACCTTATGATAATTCAAGTGAATTATCTGT
70943129 TA
1 TA
70943131 ATGCACTAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (36 bp):
TAGCTTACCTTATGATAATTCAAGTGAATTATCTGT
Found at i:70945292 original size:21 final size:22
Alignment explanation
Indices: 70945250--70945306 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 22
70945240 TCTTTTCTTA
70945250 TATTACTTATTTTAAATTGTTTTAT
1 TATTA-TTATTTTAAA-TGTTTT-T
70945275 TATTATTATTTT-AA-GTTTTT
1 TATTATTATTTTAAATGTTTTT
*
70945295 CATATATTATTT
1 TAT-TATTATTT
70945307 GTTTTAAACC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 3 0.10
21 13 0.43
23 2 0.07
24 7 0.23
25 5 0.17
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.65
Consensus pattern (22 bp):
TATTATTATTTTAAATGTTTTT
Found at i:70945313 original size:49 final size:54
Alignment explanation
Indices: 70945209--70945314 Score: 141
Period size: 49 Copynumber: 2.1 Consensus size: 54
70945199 TTTTTAAAAA
*
70945209 AAATTGTTTTATTATTATCATTTATGTTAAGTCTTTTCTTATATTACTTATTTT
1 AAATTGTTTTATTATTATCATTTATGTTAAGTCTTTTCATATATTACTTATTTT
* * *
70945263 AAATTGTTTTATTA-T-T-A-TTATTTTAAGT-TTTTCATATATTATTTGTTTT
1 AAATTGTTTTATTATTATCATTTATGTTAAGTCTTTTCATATATTACTTATTTT
70945312 AAA
1 AAA
70945315 CCCTTTTATT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
49 21 0.44
50 10 0.21
51 1 0.02
52 1 0.02
53 1 0.02
54 14 0.29
ACGTcount: A:0.28, C:0.05, G:0.06, T:0.61
Consensus pattern (54 bp):
AAATTGTTTTATTATTATCATTTATGTTAAGTCTTTTCATATATTACTTATTTT
Found at i:70945322 original size:49 final size:51
Alignment explanation
Indices: 70945220--70945332 Score: 131
Period size: 49 Copynumber: 2.2 Consensus size: 51
70945210 AATTGTTTTA
* * ***
70945220 TTATTATCATTTATGTTAAGTCTTTTCTTATATTACTTATTTTAAATTGTT
1 TTATTATTATTTATGTTAAGTCTTTTCATATATTACTTATTTTAAACCCTT
* * *
70945271 TTATTATTA-TTATTTTAAGT-TTTTCATATATTATTTGTTTTAAACCCTT
1 TTATTATTATTTATGTTAAGTCTTTTCATATATTACTTATTTTAAACCCTT
70945320 TTATTATTTATTT
1 TTATTA-TTATTT
70945333 TGAATTGTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
49 29 0.56
50 13 0.25
51 10 0.19
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.63
Consensus pattern (51 bp):
TTATTATTATTTATGTTAAGTCTTTTCATATATTACTTATTTTAAACCCTT
Found at i:70945343 original size:22 final size:22
Alignment explanation
Indices: 70945250--70945343 Score: 71
Period size: 22 Copynumber: 4.0 Consensus size: 22
70945240 TCTTTTCTTA
*
70945250 TATTACTTATTTTAAATTGTTT
1 TATTATTTATTTTAAATTGTTT
* *
70945272 TATTATTATTATTTTAAGTTTTTCAT
1 TATTA-T-TTATTTTAAATTGTT--T
* ***
70945298 ATATTATTTGTTTTAAACCCTTT
1 -TATTATTTATTTTAAATTGTTT
*
70945321 TATTATTTATTTTGAATTGTTT
1 TATTATTTATTTTAAATTGTTT
70945343 T
1 T
70945344 TATAAATCAT
Statistics
Matches: 54, Mismatches: 13, Indels: 10
0.70 0.17 0.13
Matches are distributed among these distances:
22 23 0.43
23 1 0.02
24 13 0.24
25 10 0.19
26 2 0.04
27 5 0.09
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (22 bp):
TATTATTTATTTTAAATTGTTT
Found at i:70947002 original size:19 final size:19
Alignment explanation
Indices: 70946978--70947031 Score: 94
Period size: 17 Copynumber: 2.9 Consensus size: 19
70946968 ATAATCTTCA
70946978 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
70946997 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
70947014 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
70947032 AGATATGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
17 17 0.52
19 16 0.48
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:70947021 original size:22 final size:19
Alignment explanation
Indices: 70946993--70947040 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
70946983 ATGCAATCTT
70946993 AGATATGATACAATCTTAGA
1 AGATATGAT-CAATCTTAGA
70947013 TATGATATG--CAATCTTAGA
1 -A-GATATGATCAATCTTAGA
70947032 AGATATGAT
1 AGATATGAT
70947041 TTTGTAATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
17 6 0.25
18 1 0.04
19 10 0.42
21 1 0.04
22 6 0.25
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (19 bp):
AGATATGATCAATCTTAGA
Found at i:70947057 original size:22 final size:22
Alignment explanation
Indices: 70946978--70947054 Score: 71
Period size: 17 Copynumber: 3.8 Consensus size: 22
70946968 ATAATCTTCA
70946978 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
70946997 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
70947014 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
70947036 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
70947055 GATTTCATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
17 17 0.34
19 13 0.26
22 8 0.16
23 12 0.24
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:70951966 original size:7 final size:7
Alignment explanation
Indices: 70951954--70952006 Score: 67
Period size: 6 Copynumber: 7.7 Consensus size: 7
70951944 CTATTTCAAA
70951954 AAAAAAG
1 AAAAAAG
70951961 -AAAAA-
1 AAAAAAG
70951966 AAAAAA-
1 AAAAAAG
70951972 AAAAAAG
1 AAAAAAG
70951979 AAAAAAG
1 AAAAAAG
70951986 AGAAAAATG
1 A-AAAAA-G
70951995 AAAAAAG
1 AAAAAAG
70952002 AAAAA
1 AAAAA
70952007 TGGAGAGGCC
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
6 16 0.38
7 14 0.33
8 10 0.24
9 2 0.05
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:70952000 original size:1 final size:1
Alignment explanation
Indices: 70951951--70951984 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
70951941 CTTCTATTTC
* *
70951951 AAAAAAAAAGAAAAAAAAAAAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
70951985 GAGAAAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:70952000 original size:9 final size:9
Alignment explanation
Indices: 70951952--70951992 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
70951942 TTCTATTTCA
70951952 AAAAAAAAG
1 AAAAAAAAG
*
70951961 AAAAAAAAA
1 AAAAAAAAG
70951970 AAAAAAAAG
1 AAAAAAAAG
*
70951979 AAAAAAGAG
1 AAAAAAAAG
70951988 AAAAA
1 AAAAA
70951993 TGAAAAAAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:70952007 original size:14 final size:14
Alignment explanation
Indices: 70951954--70952008 Score: 62
Period size: 14 Copynumber: 4.0 Consensus size: 14
70951944 CTATTTCAAA
70951954 AAAAAAGAAAAA--
1 AAAAAAGAAAAATG
*
70951966 AAAAAA-AAAAAAG
1 AAAAAAGAAAAATG
70951979 AAAAAAGAGAAAAATG
1 -AAAAA-AGAAAAATG
70951995 AAAAAAGAAAAATG
1 AAAAAAGAAAAATG
70952009 GAGAGGCCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
11 5 0.14
12 6 0.16
14 14 0.38
15 6 0.16
16 6 0.16
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.04
Consensus pattern (14 bp):
AAAAAAGAAAAATG
Found at i:70953099 original size:132 final size:132
Alignment explanation
Indices: 70952862--70953163 Score: 505
Period size: 132 Copynumber: 2.3 Consensus size: 132
70952852 AAGAAACAAG
70952862 ATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTTAC
1 ATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTTAC
* *
70952927 AGCGAAGCAGATCGAAGATTTCGGCATGGCATCCCTGTGTTTATAGGGAACAAGCTGAAGATAGC
66 AACGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGCTGAAGATAGC
70952992 AA
131 AA
* * * *
70952994 ATTTGGCATCCCTATGTTTATAGGGAACAAATTGAAGATAGCAGATCTGACATTCCTGTGCTTAC
1 ATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTTAC
*
70953059 AACGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
66 AACGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGCTGAAGATAGC
*
70953124 AG
131 AA
* * *
70953126 ATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA
1 ATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGA
70953164 CATAGTTGAT
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 156 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
ATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTTAC
AACGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGCTGAAGATAGC
AA
Found at i:70953163 original size:44 final size:44
Alignment explanation
Indices: 70952860--70953163 Score: 251
Period size: 44 Copynumber: 6.9 Consensus size: 44
70952850 CAAAGAAACA
70952860 AGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGC
1 AGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGC
* * * * * **
70952904 AGATCTGACA-CTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTC
1 AGATTTGGCATC-CCTGTGCTTATAGGGAA-CAAATCGAAGATAGC
* * *
70952949 GGCA--TGGCATCCCTGTGTTTATAGGGAAC-AAGCTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGCTTATAGGGAACAAATC-GAAGATAGC
* * * *
70952992 AAATTTGGCATCCCTATGTTTATAGGGAACAAATTGAAGATAGC
1 AGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGC
* * * * ** * **
70953036 AGATCTGACATTCCTGTGCTTACAACGAAGCAGATCGAAGATTTC
1 AGATTTGGCATCCCTGTGCTTATAGGGAA-CAAATCGAAGATAGC
* * *
70953081 AGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGC
* * *
70953124 AGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA
1 AGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGA
70953164 CATAGTTGAT
Statistics
Matches: 197, Mismatches: 51, Indels: 24
0.72 0.19 0.09
Matches are distributed among these distances:
42 4 0.02
43 21 0.11
44 141 0.72
45 29 0.15
46 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGC
Found at i:70953489 original size:206 final size:206
Alignment explanation
Indices: 70953125--70953923 Score: 1330
Period size: 206 Copynumber: 3.9 Consensus size: 206
70953115 GAAGATAGCA
* *
70953125 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGTTGATTTGGCTTTCACG-GTT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* *
70953189 TACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
** * *
70953254 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAAC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
*
70953319 AGATCCAAGGT
196 AGATCCAAGAT
* *
70953330 GATTTGGTATCCTTGTTCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* *
70953395 TACGATGAAGCAATTCTAAGATGATTTGGCATCTTTGTATTGTCAGAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * *
70953460 CATCTCCATATTCGATGGAGAGTAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
70953525 AGATCCAAGAT
196 AGATCCAAGAT
*
70953536 GATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
70953601 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * *
70953666 CGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGATTAAACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
70953731 AGATCCAAGAT
196 AGATCCAAGAT
* * * * *
70953742 GGTTTGGCATTCTTGTACTTACAAGGAACAAATCGAAGACATAGCTGATTTGGATTTCACATGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* * *
70953807 TACAATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTATCAGAGAATAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
*
70953872 CGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATG
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATG
70953924 ATTTGTAACA
Statistics
Matches: 559, Mismatches: 34, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
205 58 0.10
206 501 0.90
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
AGATCCAAGAT
Found at i:70955445 original size:40 final size:40
Alignment explanation
Indices: 70955403--70955552 Score: 194
Period size: 40 Copynumber: 3.8 Consensus size: 40
70955393 ATCACGATTT
*
70955403 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTA
* *
70955443 GCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACTACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTA
* * * * *
70955483 GCATAAATGTCC-TCGGGACTTAGCCCGGATGTAGCCACTA
1 GCACAAATG-CCTTCGGGTCTTAGCCCGGATTTAACAACTA
* *
70955523 GCACAATTGCCTTCGGGTCTTAACCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
70955553 ATAATTTCCA
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTA
Found at i:70955566 original size:80 final size:80
Alignment explanation
Indices: 70955371--70955592 Score: 214
Period size: 80 Copynumber: 2.8 Consensus size: 80
70955361 CCGCACCAAG
* * * * *** * * *
70955371 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAATG-CCTTCGGGTCTTAGCCCGGATTT
1 GCCTTCGGGTCTTAACCCGGATATAACTACCAGCATAAATGTCC-TCGGGACTTAGCCCGGATGT
*
70955435 AACAACTTGCACGAAT
65 AACAACTAGCACGAAT
* * *
70955451 GCCTTCGGGTCTTAGCCCGGATTTAACTACTAGCATAAATGTCCTCGGGACTTAGCCCGGATGTA
1 GCCTTCGGGTCTTAACCCGGATATAACTACCAGCATAAATGTCCTCGGGACTTAGCCCGGATGTA
* *
70955516 GCCACTAGCAC-AATT
66 ACAACTAGCACGAA-T
* * * * * *
70955531 GCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATTAACGTCTTCGGGGCTTAGCCCGGAT
1 GCCTTCGGGTCTTAACCCGGATATAACTACCAGCATAAATGTCCTCGGGACTTAGCCCGGAT
70955593 ATCATTCAAT
Statistics
Matches: 117, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
79 2 0.02
80 113 0.97
81 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCCTTCGGGTCTTAACCCGGATATAACTACCAGCATAAATGTCCTCGGGACTTAGCCCGGATGTA
ACAACTAGCACGAAT
Found at i:70967732 original size:80 final size:80
Alignment explanation
Indices: 70967567--70967747 Score: 233
Period size: 80 Copynumber: 2.2 Consensus size: 80
70967557 GATCCTAGAT
* * *
70967567 TGTAAAATTACCGAAATACCTCTGGATTTTAAAATTATCGAAATACCCCCGTTTTGTAAAATTAC
1 TGTAAAATTACCGAAATACCACT-GATTTTAAAATTATCGAAATACCCCAGTTTGGTAAAATTAC
*
70967632 CAAAATACCCTCAGTT
65 CAAAATACCCTCAGTG
* *
70967648 TGTAAAATTATCGAAATACCACT-ATTTGTAAAATTATCGAAATACCCTTAG-TTGGTAAAATTA
1 TGTAAAATTACCGAAATACCACTGATTT-TAAAATTATCGAAATACCC-CAGTTTGGTAAAATTA
*
70967711 CCAAAATACCCT-TGTAG
64 CCAAAATACCCTCAGT-G
*
70967728 TGTAAAATTACCAAAATACC
1 TGTAAAATTACCGAAATACC
70967748 CCTGTAGGTT
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
79 6 0.07
80 60 0.68
81 22 0.25
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (80 bp):
TGTAAAATTACCGAAATACCACTGATTTTAAAATTATCGAAATACCCCAGTTTGGTAAAATTACC
AAAATACCCTCAGTG
Found at i:70967754 original size:27 final size:27
Alignment explanation
Indices: 70967565--70967753 Score: 179
Period size: 27 Copynumber: 7.0 Consensus size: 27
70967555 AAGATCCTAG
* *
70967565 ATTGTAAAATTACCGAAATACCTCTGG
1 ATTGTAAAATTACCGAAATACCCCTGT
* * *
70967592 ATTTTAAAATTATCGAAATACCCCCGT
1 ATTGTAAAATTACCGAAATACCCCTGT
* * *
70967619 TTTGTAAAATTACCAAAATACCCTCAGT
1 ATTGTAAAATTACCGAAATACCC-CTGT
* * *
70967647 -TTGTAAAATTATCGAAATACCACTAT
1 ATTGTAAAATTACCGAAATACCCCTGT
*
70967673 -TTGTAAAATTATCGAAATA-CCCT-T
1 ATTGTAAAATTACCGAAATACCCCTGT
* *
70967697 AGTTGGTAAAATTACCAAAATACCCTTGT
1 A-TT-GTAAAATTACCGAAATACCCCTGT
* *
70967726 AGTGTAAAATTACCAAAATACCCCTGT
1 ATTGTAAAATTACCGAAATACCCCTGT
70967753 A
1 A
70967754 GGTTAAAATG
Statistics
Matches: 135, Mismatches: 21, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
24 1 0.01
25 3 0.02
26 23 0.17
27 99 0.73
28 7 0.05
29 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
ATTGTAAAATTACCGAAATACCCCTGT
Found at i:70968270 original size:26 final size:27
Alignment explanation
Indices: 70968167--70968268 Score: 89
Period size: 27 Copynumber: 3.8 Consensus size: 27
70968157 CATCTTGTTC
* ** *
70968167 ATGGCTTTGTGCTAATCGTATTTACCT
1 ATGGCTATGTGCCGATCATATTTACCT
* * *
70968194 GTGGCTATGTGCCTATCATATTTACTT
1 ATGGCTATGTGCCGATCATATTTACCT
* * * *
70968221 ATGACTCTGTGTCGA-CCTATTTACCT
1 ATGGCTATGTGCCGATCATATTTACCT
*
70968247 ATGGTTATGTGCCGATCATATT
1 ATGGCTATGTGCCGATCATATT
70968269 ACAACTACTG
Statistics
Matches: 56, Mismatches: 18, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
26 20 0.36
27 36 0.64
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.42
Consensus pattern (27 bp):
ATGGCTATGTGCCGATCATATTTACCT
Found at i:70968295 original size:32 final size:32
Alignment explanation
Indices: 70968254--70968316 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
70968244 CCTATGGTTA
* *
70968254 TGTGCCGATCATATTACAACTACTGATGGCTT
1 TGTGCCGATCAAATTACAACTACTAATGGCTT
**
70968286 TGTGCCGATCAAATTACCGCTACTAATGGCT
1 TGTGCCGATCAAATTACAACTACTAATGGCT
70968317 GCAAACCCGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (32 bp):
TGTGCCGATCAAATTACAACTACTAATGGCTT
Found at i:70976418 original size:40 final size:40
Alignment explanation
Indices: 70976291--70976420 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
70976281 ATGCTGGAAA
* *
70976291 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
70976331 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
70976371 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
70976411 TTATATCCGG
1 TTATATCCGG
70976421 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Done.