Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 238 of 770
Found at i:71348590 original size:6 final size:6
Alignment explanation
Indices: 71348573--71348748 Score: 112
Period size: 6 Copynumber: 28.8 Consensus size: 6
71348563 ATTTTGTTAC
* * *
71348573 CTGATA CTGATT CTGATT CTG-TT ACCTAATT CTGATT CTGGTT CTGATT
1 CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT
* * * *
71348622 CTGATT CTG-TT ACATAATA CTGATT CTGATT CTG-TT ACCTAATT CTAATT
1 CTGATT CTGATT -C-TGATT CTGATT CTGATT CTGATT --CTGATT CTGATT
* * * *
71348672 CTGATT -TTATT TTGATT CTG-TCAC CTGATT CTGATT TTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT
* *
71348720 CTGATT CTCATT TTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGATT CTGA-TT CTGAT
71348749 AATGTTTCTT
Statistics
Matches: 133, Mismatches: 22, Indels: 30
0.72 0.12 0.16
Matches are distributed among these distances:
5 12 0.09
6 105 0.79
7 10 0.08
8 6 0.05
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
CTGATT
Found at i:71348607 original size:25 final size:25
Alignment explanation
Indices: 71348567--71348618 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
71348557 GTTTTCATTT
*
71348567 TGTTACCTGATACTGATTCTGATTC
1 TGTTACCTAATACTGATTCTGATTC
* *
71348592 TGTTACCTAATTCTGATTCTGGTTC
1 TGTTACCTAATACTGATTCTGATTC
71348617 TG
1 TG
71348619 ATTCTGATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.17, C:0.19, G:0.17, T:0.46
Consensus pattern (25 bp):
TGTTACCTAATACTGATTCTGATTC
Found at i:71348608 original size:31 final size:31
Alignment explanation
Indices: 71348573--71348722 Score: 117
Period size: 31 Copynumber: 4.7 Consensus size: 31
71348563 ATTTTGTTAC
*
71348573 CTGATACTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATT
* *
71348604 CTGATTCTGGTTCTGATTCTGATT--CT-GTT
1 CTGATTCTGATTCTGATTCTG-TTACCTAATT
* *
71348633 ACATAATACTGATTCTGATTCTGTTACCTAATT
1 -C-TGATTCTGATTCTGATTCTGTTACCTAATT
* * * *
71348666 CTAATTCTGATTTTATTTTGATTCTGTCACCTGATT
1 CTGATTCTG-----ATTCTGATTCTGTTACCTAATT
*
71348702 CTGATTTTGATTCTGATTCTG
1 CTGATTCTGATTCTGATTCTG
71348723 ATTCTCATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
29 2 0.02
30 5 0.05
31 54 0.57
32 5 0.05
33 2 0.02
36 26 0.28
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (31 bp):
CTGATTCTGATTCTGATTCTGTTACCTAATT
Found at i:71348620 original size:37 final size:37
Alignment explanation
Indices: 71348573--71348655 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
71348563 ATTTTGTTAC
* * *
71348573 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACATAATACTGATT
*
71348610 CTGGTTCTGATTCTGATTCTGTTACATAATACTGATT
1 CTGATTCTGATTCTGATTCTGTTACATAATACTGATT
71348647 CTGATTCTG
1 CTGATTCTG
71348656 TTACCTAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACATAATACTGATT
Found at i:71348646 original size:25 final size:25
Alignment explanation
Indices: 71348616--71348677 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
71348606 GATTCTGGTT
71348616 CTGATTCTGATTCTGTTACATAATA
1 CTGATTCTGATTCTGTTACATAATA
* *
71348641 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACATAATA
*
71348666 CTAATTCTGATT
1 CTGATTCTGATT
71348678 TTATTTTGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACATAATA
Found at i:71348649 original size:62 final size:61
Alignment explanation
Indices: 71348567--71348716 Score: 210
Period size: 62 Copynumber: 2.4 Consensus size: 61
71348557 GTTTTCATTT
* *
71348567 TGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTCTGATTCTGATTC
1 TGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTGATT-TGATTCTGATTC
* * * *
71348629 TGTTACATAATACTGATTCTGATTCTGTTACCTAATTCTAATTCTGATTTTATTTTGATTC
1 TGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTGATTTGATTCTGATTC
* * *
71348690 TGTCACCTGATTCTGATTTTGATTCTG
1 TGTTACCTGATACTGATTCTGATTCTG
71348717 ATTCTGATTC
Statistics
Matches: 77, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
61 32 0.42
62 45 0.58
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (61 bp):
TGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTGATTTGATTCTGATTC
Found at i:71348667 original size:19 final size:19
Alignment explanation
Indices: 71348582--71348649 Score: 86
Period size: 19 Copynumber: 3.6 Consensus size: 19
71348572 CCTGATACTG
71348582 ATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGTTACCTA
*
71348601 ATTCTGATTCTGGTT--CTG
1 ATTCTGATTCT-GTTACCTA
*
71348619 ATTCTGATTCTGTTACATA
1 ATTCTGATTCTGTTACCTA
*
71348638 ATACTGATTCTG
1 ATTCTGATTCTG
71348650 ATTCTGTTAC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
17 3 0.07
18 13 0.31
19 23 0.55
20 3 0.07
ACGTcount: A:0.21, C:0.18, G:0.15, T:0.47
Consensus pattern (19 bp):
ATTCTGATTCTGTTACCTA
Found at i:71351931 original size:39 final size:40
Alignment explanation
Indices: 71351869--71352050 Score: 218
Period size: 39 Copynumber: 4.7 Consensus size: 40
71351859 GCTACTCGTT
* * *
71351869 CAAATACCTTCGGGAC-AAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
71351908 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
71351947 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* *
71351987 C-AATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
71352027 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71352051 CATCATTCGA
Statistics
Matches: 131, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
38 3 0.02
39 95 0.73
40 33 0.25
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:71351992 original size:78 final size:79
Alignment explanation
Indices: 71351875--71352050 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 79
71351865 CGTTCAAATA
* *
71351875 CCTTCGGGAC-AAGCCCGG-TTATAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-CCCGGATTT
1 CCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGCCCGGATTT
*
71351936 AGTAAC-TCGCACAAATG
64 AGTAACTTAGCAC-AA-G
* *
71351953 CCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCAC-AATGCCTTCGGATCTTAGTCCGGATTTA
1 CCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATTTA
71352016 GTAACTTAGCACAAG
65 GTAACTTAGCACAAG
71352031 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
71352051 CATCATTCGA
Statistics
Matches: 85, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
77 6 0.07
78 35 0.41
79 37 0.44
80 7 0.08
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATTTAG
TAACTTAGCACAAG
Found at i:71359990 original size:40 final size:40
Alignment explanation
Indices: 71359940--71360137 Score: 287
Period size: 40 Copynumber: 5.0 Consensus size: 40
71359930 AGCCCGGTTA
*
71359940 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATT
71359980 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
71360020 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
*
71360060 TAGTAACTCGCACAATTGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* * *
71360100 TAGTAACTTAGCACAGA-GCCTTCGGGA-CTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
71360138 CATCATTCGA
Statistics
Matches: 148, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
39 3 0.02
40 135 0.91
41 10 0.07
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:71362064 original size:27 final size:27
Alignment explanation
Indices: 71362034--71362212 Score: 252
Period size: 27 Copynumber: 6.6 Consensus size: 27
71362024 TTAGTTTACC
* *
71362034 AAATTACCAAAATACCCCTGGTTTTTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* **
71362061 AAATTACCAAAATA-CCCTCGGTTTACA
1 AAATTACCAAAATACCCCT-AGTTTGTA
*
71362088 AAATTACCAAAATAACCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
71362115 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
71362142 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
71362169 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
**
71362196 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
71362213 TTGACCTGTA
Statistics
Matches: 140, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
26 4 0.03
27 132 0.94
28 4 0.03
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:71362223 original size:81 final size:80
Alignment explanation
Indices: 71362034--71362285 Score: 245
Period size: 81 Copynumber: 3.1 Consensus size: 80
71362024 TTAGTTTACC
* ** * * **
71362034 AAATTACCAAAATACCCCTGGTTTTTAAAATTACCAAAATACCCTCGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGCCTGTAAAATTACCAAAATACCCT-AGTTTGTAAAATTACCAAA
* * *
71362099 ATAACCCTAGTTTGTA
65 ATACCCCTAATTTGTG
**
71362115 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGCCTGTAAAATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAA
71362180 ATACCCCTAATTTGTG
65 ATACCCCTAATTTGTG
** * *** * *
71362196 AAATTACTGAAATA-CCCTTGACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCTAG-CCTGTAAAATTACCAAAATACCCTAG-TTTGTAAAATTACCAA
* * *
71362260 AGTACCCCTGATTTATG
64 AATACCCCTAATTTGTG
*
71362277 GAATTACCA
1 AAATTACCA
71362286 TTTTACCCTC
Statistics
Matches: 144, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
80 10 0.07
81 130 0.90
82 4 0.03
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTAGCCTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAA
TACCCCTAATTTGTG
Found at i:71362265 original size:27 final size:27
Alignment explanation
Indices: 71362034--71362321 Score: 210
Period size: 27 Copynumber: 10.7 Consensus size: 27
71362024 TTAGTTTACC
* *
71362034 AAATTACCAAAATACCC-CTGGTTTTTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* **
71362061 AAATTACCAAAATACCCTCGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
71362088 AAATTACCAAAATAACCCTAG-TTTGTA
1 AAATTACCAAAAT-ACCCTCGATTTGTA
*
71362115 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
71362142 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
71362169 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** * **
71362196 AAATTACTGAAATACCCTTGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
71362223 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
71362250 AAATTACCAAAGTACCC-CTGATTTATG
1 AAATTACCAAAATACCCTC-GATTTGTA
* *** **
71362277 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
71362304 AAATTATCGAAATACCCT
1 AAATTACCAAAATACCCT
71362322 TGTAGGGTAG
Statistics
Matches: 215, Mismatches: 38, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
26 5 0.02
27 201 0.93
28 9 0.04
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:71362537 original size:81 final size:81
Alignment explanation
Indices: 71362311--71362538 Score: 296
Period size: 81 Copynumber: 2.8 Consensus size: 81
71362301 ACAAAATTAT
* ** * * * *
71362311 CGAAAT-ACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGTTAGAAATATCGAAATACCC
1 CGAAATAACCC-TGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCC
* *
71362375 CTGTAGGGTAGAAATAC
65 TTGTAGGGTACAAATAC
* * * * *
71362392 CAAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAAAATTACTGAAATACCCT
1 CGAAATAACCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCT
71362457 TGTAGGGTACAAATAC
66 TGTAGGGTACAAATAC
* *
71362473 TGAAATAACCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAGATACCCT
1 CGAAATAACCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCT
71362538 T
66 T
71362539 TTATGGTAAA
Statistics
Matches: 125, Mismatches: 21, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
81 122 0.98
82 3 0.02
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (81 bp):
CGAAATAACCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCT
TGTAGGGTACAAATAC
Found at i:71362546 original size:27 final size:27
Alignment explanation
Indices: 71362305--71362554 Score: 266
Period size: 27 Copynumber: 9.3 Consensus size: 27
71362295 CGATTTACAA
* *
71362305 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
71362332 AAATACCGAAATACCCTTGTAGGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
71362359 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
71362386 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
71362413 AATTACTAAAATACCCCTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
71362440 AATTACTGAAATACCCTTGTAGGGTAC
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
71362467 AAATACTGAAATAACCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
71362494 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
71362521 AATTACCGAGATACCCTTTTATGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
71362548 AATTACC
1 AATTACC
71362555 ATTTTACCCC
Statistics
Matches: 193, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 193 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:71362890 original size:2 final size:2
Alignment explanation
Indices: 71362883--71362912 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
71362873 GCTTCGCCAC
*
71362883 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71362913 CTGTTCTGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:71363096 original size:6 final size:6
Alignment explanation
Indices: 71363087--71363278 Score: 119
Period size: 6 Copynumber: 31.3 Consensus size: 6
71363077 TTGCATTCAC
* * *
71363087 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
71363137 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * *
71363186 ATTCTG -TTACCTA ATTCTA ATTCTG ATTTTG AGTCTG -TCACCTG ATTCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * *
71363236 ATTCTA ATTCTG ATTCTG A-TCTT ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
71363279 AATGTTTCTT
Statistics
Matches: 144, Mismatches: 24, Indels: 36
0.71 0.12 0.18
Matches are distributed among these distances:
5 13 0.09
6 110 0.76
7 14 0.10
8 7 0.05
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:71363121 original size:25 final size:25
Alignment explanation
Indices: 71363093--71363154 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
71363083 TCACATTCTG
*
71363093 ATTCTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGTTACCTAATACTA
* *
71363118 ATTCTGATTCTGTTACCTAATTCTG
1 ATTCTGATTCTGTTACCTAATACTA
*
71363143 ATTCTGGTTCTG
1 ATTCTGATTCTG
71363155 ATTCTGATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGTTACCTAATACTA
Found at i:71363137 original size:19 final size:19
Alignment explanation
Indices: 71363115--71363210 Score: 97
Period size: 19 Copynumber: 4.8 Consensus size: 19
71363105 TTACCTGATA
71363115 CTAATTCTGATTCTGTTAC
1 CTAATTCTGATTCTGTTAC
71363134 CTAATTCTGATTCTGGTT--
1 CTAATTCTGATTCT-GTTAC
*
71363152 CTGATTCTGATTCTGTTAC
1 CTAATTCTGATTCTGTTAC
71363171 CTGATACTGATTCTGATTCTGTTAC
1 C---TA---ATTCTGATTCTGTTAC
*
71363196 CTAATTCTAATTCTG
1 CTAATTCTGATTCTG
71363211 ATTTTGAGTC
Statistics
Matches: 65, Mismatches: 3, Indels: 18
0.76 0.03 0.21
Matches are distributed among these distances:
17 3 0.05
18 13 0.20
19 26 0.40
20 3 0.05
22 3 0.05
25 17 0.26
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.47
Consensus pattern (19 bp):
CTAATTCTGATTCTGTTAC
Found at i:71363159 original size:37 final size:37
Alignment explanation
Indices: 71363109--71363191 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
71363099 ATTCTGTTAC
* * *
71363109 CTGATACTAATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
* *
71363146 CTGGTTCTGATTCTGATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
71363183 CTGATTCTG
1 CTGATTCTG
71363192 TTACCTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
Found at i:71363182 original size:25 final size:25
Alignment explanation
Indices: 71363152--71363213 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
71363142 GATTCTGGTT
*
71363152 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
71363177 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
71363202 CTAATTCTGATT
1 CTGATTCTGATT
71363214 TTGAGTCTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:71363185 original size:62 final size:62
Alignment explanation
Indices: 71363088--71363210 Score: 228
Period size: 62 Copynumber: 2.0 Consensus size: 62
71363078 TGCATTCACA
*
71363088 TTCTGATTCTGATTCTGTTACCTGATACTAATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTAATTCTGATTCTGTTACCTAATTCTAATTCTGG
*
71363150 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTG
1 TTCTGATTCTGATTCTGTTACCTGATACTAATTCTGATTCTGTTACCTAATTCTAATTCTG
71363211 ATTTTGAGTC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.47
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTAATTCTGATTCTGTTACCTAATTCTAATTCTGG
Found at i:71363237 original size:62 final size:61
Alignment explanation
Indices: 71363087--71363253 Score: 194
Period size: 62 Copynumber: 2.7 Consensus size: 61
71363077 TTGCATTCAC
* * *
71363087 ATTCTGATTCTGATTCTGTTACCTGATACTAATTCTGATTCTGTTACCTAATTCTGATTCTG
1 ATTCTGAGTCTGATCCTGTTA-CTGATACTAATTCTGATTCTGTTACCTAATTCTAATTCTG
* * * *
71363149 GTTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTG
1 ATTCTGAGTCTGATCCTGTTA-CTGATACTAATTCTGATTCTGTTACCTAATTCTAATTCTG
* *
71363211 ATTTTGAGTCTG-TCACCTGATT-CTGATTCTAATTCTGATTCTG
1 ATTCTGAGTCTGAT--CCTG-TTACTGATACTAATTCTGATTCTG
71363254 ATCTTATTTT
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
61 1 0.01
62 87 0.94
63 3 0.03
64 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (61 bp):
ATTCTGAGTCTGATCCTGTTACTGATACTAATTCTGATTCTGTTACCTAATTCTAATTCTG
Found at i:71363247 original size:25 final size:25
Alignment explanation
Indices: 71363121--71363247 Score: 80
Period size: 25 Copynumber: 4.8 Consensus size: 25
71363111 GATACTAATT
71363121 CTGATTCTG-TTACCTAATTCTGATT--
1 CTGATTCTGATT--CTAATTCTG-TTAC
* *
71363146 CTGGTTCTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTAATTCTGTTAC
* *
71363171 CTGATACTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTAATTCTGTTAC
* * * *
71363196 CTAATTCTAATTCTGATTTTGAGTCTGTCAC
1 CTGATTCTGATTCT-A-----ATTCTGTTAC
71363227 CTGATTCTGATTCTAATTCTG
1 CTGATTCTGATTCTAATTCTG
71363248 ATTCTGATCT
Statistics
Matches: 80, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
23 2 0.03
24 8 0.10
25 47 0.59
26 2 0.03
30 1 0.01
31 20 0.25
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTAATTCTGTTAC
Found at i:71364893 original size:2 final size:2
Alignment explanation
Indices: 71364886--71364925 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
71364876 CGGCTCTAGC
71364886 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71364926 GTTTGCACAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71365730 original size:40 final size:40
Alignment explanation
Indices: 71365627--71365807 Score: 172
Period size: 40 Copynumber: 4.5 Consensus size: 40
71365617 TTCGAATGGT
* * *
71365627 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
71365668 ATCTGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTA-TCAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* * *
71365708 AACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * * * *
71365748 ATCCGGGCAAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
71365789 A-CCGGGC-AATGTCCCGAAG
1 ATCCGGGCTAA-GTCCCGAAG
71365808 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
39 3 0.03
40 84 0.72
41 29 0.25
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:71365767 original size:80 final size:81
Alignment explanation
Indices: 71365629--71365779 Score: 216
Period size: 80 Copynumber: 1.9 Consensus size: 81
71365619 CGAATGGTAT
* * * *
71365629 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCTGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
71365694 GTGCGAGTTATCAAAA
66 GTGCGAGTTATCAAAA
* * *
71365710 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CAAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
71365773 TGTGCGA
65 TGTGCGA
71365780 ATCACTATAA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 1 0.02
80 36 0.58
81 25 0.40
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAGTTATCAAAA
Found at i:71365792 original size:80 final size:80
Alignment explanation
Indices: 71365629--71365807 Score: 202
Period size: 80 Copynumber: 2.2 Consensus size: 80
71365619 CGAATGGTAT
* * * *
71365629 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCTGGGTCAATTCCCGAAGGCATTT
1 CCGGG-TAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
71365694 GTGCGAGTTATCAAAA
65 GTGCGAATCATCAAAA
* *
71365710 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CAAATTCCCGAAGGCAAT
1 CCGGG-TAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
*
71365773 TGTGCGAATCA-CTATAA
64 TGTGCGAATCATC-AAAA
*
71365790 CCGGGCAATGTCCCGAAG
1 CCGGGTAA-GTCCCGAAG
71365808 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
79 4 0.05
80 55 0.65
81 25 0.30
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (80 bp):
CCGGGTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
TGCGAATCATCAAAA
Found at i:71365832 original size:80 final size:80
Alignment explanation
Indices: 71365663--71365847 Score: 180
Period size: 80 Copynumber: 2.3 Consensus size: 80
71365653 GTGCTAAGTG
* * * * *
71365663 ACTAAATCTGGGTC-AATTCCCGAAGGCATTTGTGCGAGTTATCAAAACCGGGTTAAGTCCCGAA
1 ACTAAATCCGGG-CAAATTCCCGAAGGCAATTGTGCGAATCATCAAAACCGGGTCAAGTCCCGAA
* * * * *
71365727 GGCATTCGTGCGAGTT
65 GACAATCGAGCCAGTC
*
71365743 ACTAAATCCGGGCAAATTCCCGAAGGCAATTGTGCGAATCA-CTATAACCGGG-CAATGTCCCGA
1 ACTAAATCCGGGCAAATTCCCGAAGGCAATTGTGCGAATCATC-AAAACCGGGTCAA-GTCCCGA
71365806 AGACAATCGAGCCAGTC
64 AGACAATCGAGCCAGTC
* * **
71365823 GCTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGCAAATTCCCGAAGG
71365848 TACGTGATTC
Statistics
Matches: 87, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
79 11 0.13
80 76 0.87
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (80 bp):
ACTAAATCCGGGCAAATTCCCGAAGGCAATTGTGCGAATCATCAAAACCGGGTCAAGTCCCGAAG
ACAATCGAGCCAGTC
Found at i:71368953 original size:46 final size:46
Alignment explanation
Indices: 71368790--71368962 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
71368780 GGTTGAGCAT
*
71368790 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
71368834 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
71368879 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
71368927 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71368963 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:71371933 original size:15 final size:15
Alignment explanation
Indices: 71371913--71371981 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
71371903 GTATCTTGGG
71371913 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
71371928 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
71371943 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
71371958 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
71371973 TTTCTTTAT
1 TTTCTTTAT
71371982 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:71371982 original size:30 final size:30
Alignment explanation
Indices: 71371904--71371991 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
71371894 CATAGTATCG
* * * *
71371904 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
71371934 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
71371964 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
71371992 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:71374422 original size:46 final size:46
Alignment explanation
Indices: 71374372--71374547 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
71374362 TGGTTGAGCA
71374372 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71374418 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71374463 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
71374511 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71374548 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71374528 original size:93 final size:93
Alignment explanation
Indices: 71374369--71374539 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
71374359 GGATGGTTGA
* *
71374369 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71374434 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
71374462 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71374527 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
71374540 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71377632 original size:40 final size:40
Alignment explanation
Indices: 71377534--71377714 Score: 172
Period size: 40 Copynumber: 4.5 Consensus size: 40
71377524 TTCGAATGGT
* * *
71377534 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
71377575 ATCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTA-TCAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* * *
71377615 AACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * * * * *
71377655 ATCCGGGCAAATTCTCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
71377696 A-CCGGGC-AATGTCCCGAAG
1 ATCCGGGCTAA-GTCCCGAAG
71377715 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
39 3 0.03
40 83 0.72
41 30 0.26
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:71377674 original size:80 final size:81
Alignment explanation
Indices: 71377536--71377686 Score: 216
Period size: 80 Copynumber: 1.9 Consensus size: 81
71377526 CGAATGGTAT
* * *
71377536 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
71377601 GTGCGAGTTATCAAAA
66 GTGCGAGTTATCAAAA
* * * *
71377617 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CAAATTCTCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
71377680 TGTGCGA
65 TGTGCGA
71377687 ATCACTATAA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 1 0.02
80 36 0.58
81 25 0.40
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAGTTATCAAAA
Found at i:71377699 original size:80 final size:80
Alignment explanation
Indices: 71377536--71377714 Score: 202
Period size: 80 Copynumber: 2.2 Consensus size: 80
71377526 CGAATGGTAT
* * *
71377536 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGG-TAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
71377601 GTGCGAGTTATCAAAA
65 GTGCGAATCATCAAAA
* * *
71377617 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CAAATTCTCGAAGGCAAT
1 CCGGG-TAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
*
71377680 TGTGCGAATCA-CTATAA
64 TGTGCGAATCATC-AAAA
*
71377697 CCGGGCAATGTCCCGAAG
1 CCGGGTAA-GTCCCGAAG
71377715 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
79 4 0.05
80 55 0.65
81 25 0.30
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (80 bp):
CCGGGTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
TGCGAATCATCAAAA
Found at i:71380472 original size:27 final size:27
Alignment explanation
Indices: 71380442--71380718 Score: 279
Period size: 27 Copynumber: 10.3 Consensus size: 27
71380432 TTAGTTTACC
71380442 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
71380469 AAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
71380496 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
71380523 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
71380550 AAATTACCAAAATACTCC-TGGTTTGTA
1 AAATTACCAAAATAC-CCTTGGTTTGTA
**
71380577 AAATTACCAAAATACCC-CAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
71380603 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
** * ***
71380630 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*** * **
71380657 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * **
71380684 AAATTACCAAACTACCCCTGATTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
71380711 AAATTACC
1 AAATTACC
71380719 GTTTTACCCT
Statistics
Matches: 212, Mismatches: 36, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 26 0.12
27 184 0.87
28 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:71380753 original size:27 final size:26
Alignment explanation
Indices: 71380699--71380755 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
71380689 ACCAAACTAC
***
71380699 CCCTGATTTACAAAATTACCGTTTTA
1 CCCTGATTTACAAAATTACCGGAATA
*
71380725 CCCTGAATTTACAAAATTATCGGAATA
1 CCCTG-ATTTACAAAATTACCGGAATA
71380752 CCCT
1 CCCT
71380756 TGTAGGGTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.33, C:0.25, G:0.09, T:0.33
Consensus pattern (26 bp):
CCCTGATTTACAAAATTACCGGAATA
Found at i:71380778 original size:27 final size:27
Alignment explanation
Indices: 71380748--71380984 Score: 289
Period size: 27 Copynumber: 8.8 Consensus size: 27
71380738 AAATTATCGG
*
71380748 AATACCCTTGTAGGGTAGAAATACCGA
1 AATACCCTTGTAGGGTAGAAATACTGA
71380775 AATACCCTTGTAGGGTAGAAATACTGA
1 AATACCCTTGTAGGGTAGAAATACTGA
* *
71380802 AATACCCCTGTAGGGTAGAAATACCGA
1 AATACCCTTGTAGGGTAGAAATACTGA
* * *
71380829 AATA-CCTCTATAGGGTAGAATTACTAA
1 AATACCCT-TGTAGGGTAGAAATACTGA
* * *
71380856 AATACCCTTATAGGGTAGAATTACCGA
1 AATACCCTTGTAGGGTAGAAATACTGA
71380883 AATACCCTTGTAGGGTAGAAATACTGA
1 AATACCCTTGTAGGGTAGAAATACTGA
* * *
71380910 AATACCCCTGTAGGGTAGAATTACTAA
1 AATACCCTTGTAGGGTAGAAATACTGA
* * * *
71380937 AATACCCCTATAGGGTAGAATTACAGA
1 AATACCCTTGTAGGGTAGAAATACTGA
* *
71380964 GATACCCTTGTGGGGTA-AAAT
1 AATACCCTTGTAGGGTAGAAAT
71380985 TACCATTTTA
Statistics
Matches: 184, Mismatches: 24, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
26 5 0.03
27 176 0.96
28 3 0.02
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (27 bp):
AATACCCTTGTAGGGTAGAAATACTGA
Found at i:71380833 original size:81 final size:81
Alignment explanation
Indices: 71380748--71380984 Score: 325
Period size: 81 Copynumber: 2.9 Consensus size: 81
71380738 AAATTATCGG
* ** * * * *
71380748 AATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGT
1 AATACCCTTGTAGGGTAGAATTACTAAAATACCCTTATAGGGTAGAATTACAGAAATACCCTTGT
71380813 AGGGTAGAAATACCGA
66 AGGGTAGAAATACCGA
* *
71380829 AATA-CCTCTATAGGGTAGAATTACTAAAATACCCTTATAGGGTAGAATTACCGAAATACCCTTG
1 AATACCCT-TGTAGGGTAGAATTACTAAAATACCCTTATAGGGTAGAATTACAGAAATACCCTTG
*
71380893 TAGGGTAGAAATACTGA
65 TAGGGTAGAAATACCGA
* * *
71380910 AATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACAGAGATACCCTTGT
1 AATACCCTTGTAGGGTAGAATTACTAAAATACCCTTATAGGGTAGAATTACAGAAATACCCTTGT
*
71380975 GGGGTA-AAAT
66 AGGGTAGAAAT
71380985 TACCATTTTA
Statistics
Matches: 139, Mismatches: 15, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
80 7 0.05
81 130 0.94
82 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (81 bp):
AATACCCTTGTAGGGTAGAATTACTAAAATACCCTTATAGGGTAGAATTACAGAAATACCCTTGT
AGGGTAGAAATACCGA
Found at i:71381324 original size:2 final size:2
Alignment explanation
Indices: 71381317--71381346 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
71381307 GCTTCGCCAC
71381317 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71381347 CTGTTCTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71381530 original size:6 final size:6
Alignment explanation
Indices: 71381521--71381719 Score: 122
Period size: 6 Copynumber: 32.3 Consensus size: 6
71381511 TTGCATTCAC
* * *
71381521 ATTCTG ATTCTG ATTCT- ATTACCTG ATACTG ATTCCG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
71381571 ATTCTG ATCCTG GTTCTA ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * *
71381620 ATTCTG -TTACCTA ATTCTG ATTCTG ATTCTG ATTCGG ATTTTG ATTCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
71381669 -TCACCTG ATTCTA ATTCTG ATTCTA ATTCTC ATTTTG ATTCT- AGTTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
71381718 AT
1 AT
71381720 ATTGTTTCTT
Statistics
Matches: 147, Mismatches: 29, Indels: 34
0.70 0.14 0.16
Matches are distributed among these distances:
5 11 0.07
6 115 0.78
7 13 0.09
8 8 0.05
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:71381552 original size:25 final size:25
Alignment explanation
Indices: 71381524--71381588 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
71381514 CATTCACATT
*
71381524 CTGATTCTGATTCTATTACCTGATA
1 CTGATTCTGATTCTATTACCTAATA
* * *
71381549 CTGATTCCGATTCTGTTACCTAATT
1 CTGATTCTGATTCTATTACCTAATA
* *
71381574 CTGATCCTGGTTCTA
1 CTGATTCTGATTCTA
71381589 ATTCTGATTC
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (25 bp):
CTGATTCTGATTCTATTACCTAATA
Found at i:71381598 original size:37 final size:37
Alignment explanation
Indices: 71381542--71381624 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
71381532 GATTCTATTA
* * *
71381542 CCTGATACTGATTCCGATTCTGTTACCTAATTCTGAT
1 CCTGATTCTAATTCCGATTCTGTTACCTAATACTGAT
* * *
71381579 CCTGGTTCTAATTCTGATTCTGTTACCTGATACTGAT
1 CCTGATTCTAATTCCGATTCTGTTACCTAATACTGAT
*
71381616 TCTGATTCT
1 CCTGATTCT
71381625 GTTACCTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.19, C:0.23, G:0.14, T:0.43
Consensus pattern (37 bp):
CCTGATTCTAATTCCGATTCTGTTACCTAATACTGAT
Found at i:71381624 original size:62 final size:62
Alignment explanation
Indices: 71381521--71381659 Score: 224
Period size: 62 Copynumber: 2.2 Consensus size: 62
71381511 TTGCATTCAC
71381521 ATTCTGATTCTGATTCTATTACCTGATACTGATTCCGATTCTGTTACCTAATTCTGATCCTG
1 ATTCTGATTCTGATTCTATTACCTGATACTGATTCCGATTCTGTTACCTAATTCTGATCCTG
* * * * *
71381583 GTTCTAATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTATTACCTGATACTGATTCCGATTCTGTTACCTAATTCTGATCCTG
*
71381645 ATTCTGATTCGGATT
1 ATTCTGATTCTGATT
71381660 TTGATTCTGT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 69 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTATTACCTGATACTGATTCCGATTCTGTTACCTAATTCTGATCCTG
Found at i:71381659 original size:18 final size:18
Alignment explanation
Indices: 71381521--71381719 Score: 122
Period size: 19 Copynumber: 10.8 Consensus size: 18
71381511 TTGCATTCAC
71381521 ATTCTGATTCTGATTCT-
1 ATTCTGATTCTGATTCTG
* *
71381538 ATTACCTGATACTGATTCCG
1 ATT--CTGATTCTGATTCTG
*
71381558 ATTCTG-TTACCTAATTCTG
1 ATTCTGATT--CTGATTCTG
* * *
71381577 ATCCTGGTTCTAATTCTG
1 ATTCTGATTCTGATTCTG
*
71381595 ATTCTG-TTACCTGATACTG
1 ATTCTGATT--CTGATTCTG
*
71381614 ATTCTGATTCTG-TTACCTA
1 ATTCTGATTCTGATT--CTG
71381633 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
* *
71381651 ATTCGGATTTTGATTCTG
1 ATTCTGATTCTGATTCTG
* *
71381669 -TCACCTGATTCTAATTCTG
1 AT--TCTGATTCTGATTCTG
* * *
71381688 ATTCTAATTCTCATTTTG
1 ATTCTGATTCTGATTCTG
71381706 ATTCT-AGTTCTGAT
1 ATTCTGA-TTCTGAT
71381720 ATTGTTTCTT
Statistics
Matches: 143, Mismatches: 23, Indels: 31
0.73 0.12 0.16
Matches are distributed among these distances:
17 9 0.06
18 61 0.43
19 63 0.44
20 10 0.07
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.47
Consensus pattern (18 bp):
ATTCTGATTCTGATTCTG
Found at i:71381692 original size:25 final size:25
Alignment explanation
Indices: 71381571--71381650 Score: 108
Period size: 25 Copynumber: 3.2 Consensus size: 25
71381561 CTGTTACCTA
* * *
71381571 ATTCTGAT-CCTGGTTCTAATTCTG
1 ATTCTGTTACCTGATTCTGATTCTG
*
71381595 ATTCTGTTACCTGATACTGATTCTG
1 ATTCTGTTACCTGATTCTGATTCTG
*
71381620 ATTCTGTTACCTAATTCTGATTCTG
1 ATTCTGTTACCTGATTCTGATTCTG
71381645 ATTCTG
1 ATTCTG
71381651 ATTCGGATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
24 7 0.14
25 42 0.86
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (25 bp):
ATTCTGTTACCTGATTCTGATTCTG
Found at i:71390767 original size:39 final size:39
Alignment explanation
Indices: 71390708--71390902 Score: 259
Period size: 39 Copynumber: 5.0 Consensus size: 39
71390698 TGAGGTTCGC
* *
71390708 AGGC-TTTATGCTAGTATTATATCCGGGCTAAGTCCCGA
1 AGGCATTTGTGCTGGTATTATATCCGGGCTAAGTCCCGA
* *
71390746 AGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCAGA
1 AGGCATTTGTGCTGGTATTATATCCGGGCTAAGTCCCGA
*
71390785 AGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGA
1 AGGCATTTGTGCTGGTATTATATCCGGGCTAAGTCCCGA
* * *
71390824 AGGCATTTGTGCTGGTATTATATCCGGGATAAAGTCCTGC
1 AGGCATTTGTGCTGGTATTATATCCGGGCT-AAGTCCCGA
* *
71390864 AGGC-TTTATGCTGGTATTATATCCAGGCTTAAAGTCCCG
1 AGGCATTTGTGCTGGTATTATATCCGGGC-T-AAGTCCCG
71390903 CATGCTTTCT
Statistics
Matches: 141, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
38 4 0.03
39 117 0.83
40 20 0.14
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (39 bp):
AGGCATTTGTGCTGGTATTATATCCGGGCTAAGTCCCGA
Found at i:71391058 original size:18 final size:18
Alignment explanation
Indices: 71391035--71391070 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
71391025 AAGTTGGTCA
71391035 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
71391053 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
71391071 TTATATGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.50
Consensus pattern (18 bp):
GGTATGTATTATATACTT
Found at i:71394474 original size:25 final size:25
Alignment explanation
Indices: 71394445--71394494 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
71394435 CCTTATAATA
* * *
71394445 TGAAAATGACCGTTTTGCCCCTAGG
1 TGAAAATGACCATTATACCCCTAGG
71394470 TGAAAATGACCATTATACCCCTAGG
1 TGAAAATGACCATTATACCCCTAGG
71394495 GTTTATATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (25 bp):
TGAAAATGACCATTATACCCCTAGG
Found at i:71394578 original size:40 final size:40
Alignment explanation
Indices: 71394534--71394673 Score: 271
Period size: 40 Copynumber: 3.5 Consensus size: 40
71394524 TTGATAAACC
71394534 TGATATGTATGATATGCACATGACATGTATGATATGCACA
1 TGATATGTATGATATGCACATGACATGTATGATATGCACA
*
71394574 TGATATGTATGATATGCACATGACATGTATGGTATGCACA
1 TGATATGTATGATATGCACATGACATGTATGATATGCACA
71394614 TGATATGTATGATATGCACATGACATGTATGATATGCACA
1 TGATATGTATGATATGCACATGACATGTATGATATGCACA
71394654 TGATATGTATGATATGCACA
1 TGATATGTATGATATGCACA
71394674 CGAGATGTTC
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 98 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (40 bp):
TGATATGTATGATATGCACATGACATGTATGATATGCACA
Found at i:71394681 original size:20 final size:20
Alignment explanation
Indices: 71394538--71394673 Score: 236
Period size: 20 Copynumber: 6.8 Consensus size: 20
71394528 TAAACCTGAT
71394538 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
71394558 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
71394578 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
* *
71394598 ATGTATGGTATGCACATGAT
1 ATGTATGATATGCACATGAC
71394618 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
71394638 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
71394658 ATGTATGATATGCACA
1 ATGTATGATATGCACA
71394674 CGAGATGTTC
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 109 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:71394753 original size:24 final size:24
Alignment explanation
Indices: 71394726--71394892 Score: 250
Period size: 24 Copynumber: 7.0 Consensus size: 24
71394716 GAGGAAATGC
71394726 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
71394750 AAAAGGGCTTATGCCCCAATTACT
1 AAAAGGGCTTATGCCCCAGTTATT
71394774 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
71394798 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
71394822 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
71394845 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
* *
71394870 AAAAGAGGC-TAGGCCTCAGTTAT
1 AAAAG-GGCTTATGCCCCAGTTAT
71394893 ATGATAAAGC
Statistics
Matches: 132, Mismatches: 6, Indels: 10
0.89 0.04 0.07
Matches are distributed among these distances:
23 29 0.22
24 81 0.61
25 13 0.10
26 9 0.07
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:71395120 original size:31 final size:31
Alignment explanation
Indices: 71395085--71395148 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
71395075 CGTTTACAGT
71395085 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
71395116 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
71395147 AA
1 AA
71395149 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:71403874 original size:50 final size:50
Alignment explanation
Indices: 71403757--71404087 Score: 344
Period size: 50 Copynumber: 6.6 Consensus size: 50
71403747 TGTGAGAACA
* * * * * *
71403757 CATGTGTAGTACTATGTGCAGGCTACTATGTG-ATTAAAATAGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGAT--TGTTAGGTCG
*
71403809 CACGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCG
71403859 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCG
** * ** * * * * *
71403909 CATGTGTAGTACTAAGTGCAGGGAACTATGCATACCCA-ATAGCTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATTG-TTAGGTCG
* * * * * *
71403960 CGTATGTAGTACTAAGTGCAGGTTACTATGTGTATCCGATGGTTAGGTCAG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTC-G
* * *
71404011 -GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGATCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCG
*
71404060 CATGTGTAGTACTAAGTGCAGGATACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
71404088 TGCATACCAG
Statistics
Matches: 234, Mismatches: 39, Indels: 14
0.82 0.14 0.05
Matches are distributed among these distances:
49 1 0.00
50 161 0.69
51 38 0.16
52 33 0.14
53 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCG
Found at i:71404020 original size:151 final size:151
Alignment explanation
Indices: 71403813--71404095 Score: 471
Period size: 151 Copynumber: 1.9 Consensus size: 151
71403803 AGGTCACACG
*
71403813 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGC
1 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCGCATGTGTAGTACTAAGTGC
* *
71403878 AGGCTACTACGTGTATCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGGA-ACTATGCAT
66 AGGCTACTACGTGTACCAGATTGTTAGATCGCATGTGTAGTACTAAGTGCA-GGATACTATGCAT
71403942 ACCCAATAGCTTCGATCACGTA
130 ACCCAATAGCTTCGATCACGTA
* * * *
71403964 TGTAGTACTAAGTGCAGGTTACTATGTGTATCCGATGGTTAGGTCAG-GTGTGTAGTACTAAGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTC-GCATGTGTAGTACTAAGTG
71404028 CAGGCTACTACGTGTACCAGATTGTTAGATCGCATGTGTAGTACTAAGTGCAGGATACTATGCAT
65 CAGGCTACTACGTGTACCAGATTGTTAGATCGCATGTGTAGTACTAAGTGCAGGATACTATGCAT
71404093 ACC
130 ACC
71404096 AGAGATCTTC
Statistics
Matches: 123, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
150 3 0.02
151 119 0.97
152 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (151 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCGCATGTGTAGTACTAAGTGC
AGGCTACTACGTGTACCAGATTGTTAGATCGCATGTGTAGTACTAAGTGCAGGATACTATGCATA
CCCAATAGCTTCGATCACGTA
Found at i:71407707 original size:50 final size:49
Alignment explanation
Indices: 71407585--71407772 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
71407575 GTAGACAAGG
** * *
71407585 TTATCTGGTATGCATAGTAGCCTACACTTAGTACTACACATGCGACCAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * * *
71407634 TTATCTGGTACACGTAGTTGCCTGCATTTAGTACTACACATGTGACTTAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGAC-CAA
** * *
71407684 CCATCTGATACATGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
*
71407733 TTATCTGGTACACGTAGTAGCCTGCACTTAGTGCTACACA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
71407773 CATGACCTCA
Statistics
Matches: 117, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
49 76 0.65
50 41 0.35
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (49 bp):
TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:71410624 original size:46 final size:46
Alignment explanation
Indices: 71410570--71410745 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
71410560 TGGTTGAGCA
71410570 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
71410616 TCCAAACTCGTTGAGTTGGGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71410661 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
71410709 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGA-TTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGG
71410746 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71410726 original size:93 final size:93
Alignment explanation
Indices: 71410567--71410738 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
71410557 GGATGGTTGA
* *
71410567 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
*
71410632 TGGGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
71410660 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
71410725 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
71410739 ATTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71413757 original size:2 final size:2
Alignment explanation
Indices: 71413750--71413792 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
71413740 GCTCTGTTCG
71413750 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71413792 A
1 A
71413793 GGAAGGTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:71413952 original size:15 final size:15
Alignment explanation
Indices: 71413932--71413976 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
71413922 TATGATATTG
71413932 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
*
71413947 TATCTTGGATTTCTC
1 TATCTTGGATTTCTT
*
71413962 TATCTTGGACTTCTT
1 TATCTTGGATTTCTT
71413977 AATCCTAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.13, C:0.18, G:0.13, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:71413990 original size:30 final size:30
Alignment explanation
Indices: 71413932--71413990 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
71413922 TATGATATTG
* * * *
71413932 TATCTTGGATTTCTTTATCTTGGATTTCTC
1 TATCTTGGACTTCTTAATCCTAGATTTCTC
*
71413962 TATCTTGGACTTCTTAATCCTAGTTTTCT
1 TATCTTGGACTTCTTAATCCTAGATTTCT
71413991 TGTTATCTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.15, C:0.19, G:0.12, T:0.54
Consensus pattern (30 bp):
TATCTTGGACTTCTTAATCCTAGATTTCTC
Found at i:71418350 original size:29 final size:28
Alignment explanation
Indices: 71418258--71418360 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
71418248 TACTCAATCA
** *
71418258 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-ACATTCAAGCT
* * * *
71418287 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
71418316 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
* *
71418345 CACACACTCAGTGCCA
1 CGCACACTTAGTGCCA
71418361 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:71419943 original size:12 final size:14
Alignment explanation
Indices: 71419928--71419959 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
71419918 GTGAAAACAC
71419928 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
71419940 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
71419954 ATGTGT
1 ATGTGT
71419960 CTAAAATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:71421523 original size:79 final size:81
Alignment explanation
Indices: 71421414--71421596 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
71421404 TACTCGTTCA
* *
71421414 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
71421477 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
71421494 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
71421557 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
71421573 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
71421597 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:71421596 original size:40 final size:40
Alignment explanation
Indices: 71421393--71421596 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
71421383 CGGAATTTAA
** *
71421393 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71421433 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71421473 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
71421512 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
71421552 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
71421592 CCGGA
1 CCGGA
71421597 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:71429572 original size:79 final size:81
Alignment explanation
Indices: 71429463--71429645 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
71429453 TACTCGTTCA
* *
71429463 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
71429526 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
71429543 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
71429606 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
71429622 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
71429646 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:71429645 original size:40 final size:40
Alignment explanation
Indices: 71429442--71429645 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
71429432 CGGAATTTAA
** *
71429442 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71429482 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71429522 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
71429561 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
71429601 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
71429641 CCGGA
1 CCGGA
71429646 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:71431496 original size:50 final size:50
Alignment explanation
Indices: 71431423--71431556 Score: 162
Period size: 50 Copynumber: 2.7 Consensus size: 50
71431413 CGATCACGTG
* * * * *
71431423 TGTAGTACTAAGTGCAGGATACTACGTGTATCTGATGGTTAGGTAACTTC
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTAACATA
* * **
71431473 TGTAGTACTAAATGCAGGCTACTACGTGTACCAGATTGTTAGGTTGCATA
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTAACATA
* *
71431523 TGTAGTACTAAGTGCA-GCTACTATGCGTACCAGA
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
71431557 GAGTTTTGGT
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
49 16 0.22
50 56 0.78
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (50 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTAACATA
Found at i:71433382 original size:81 final size:81
Alignment explanation
Indices: 71433266--71433453 Score: 222
Period size: 80 Copynumber: 2.3 Consensus size: 81
71433256 ATAAATTGAT
* * * *
71433266 TATGTTTGGTACTTAGTGTGCG-TATTGAGATAGCTTTAGCTATAT-AAA-GCACTTAGTGT-GT
1 TATGTTTGGCACTTAGTGTGCGAGACTGAGATAGC-TTAGCT-TATGAAATGCACTTAGTGTCGA
* *
71433327 GATTCGGAATAGCTTCGGC
64 GATT-GCAATAGCTTCAGC
* * *
71433346 TATGTATGGCACTTAGTGTGCGAGACTGAGATAGCTTCGGTTATGAAATGCACTTAGTGTGCGAG
1 TATGTTTGGCACTTAGTGTGCGAGACTGAGATAGCTTAGCTTATGAAATGCACTTAGTGT-CGAG
71433411 ATTGCAATAGCTTCAGC
65 ATTGCAATAGCTTCAGC
71433428 TATGCTTTGGCACTTAGTGTGCGAGA
1 TATG-TTTGGCACTTAGTGTGCGAGA
71433454 TATCGAGTAT
Statistics
Matches: 92, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
79 3 0.03
80 27 0.29
81 21 0.23
82 16 0.17
83 25 0.27
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (81 bp):
TATGTTTGGCACTTAGTGTGCGAGACTGAGATAGCTTAGCTTATGAAATGCACTTAGTGTCGAGA
TTGCAATAGCTTCAGC
Found at i:71433452 original size:42 final size:40
Alignment explanation
Indices: 71433266--71433454 Score: 161
Period size: 41 Copynumber: 4.7 Consensus size: 40
71433256 ATAAATTGAT
* * * **
71433266 TATGTTTGGTACTTAGTGTGCG-TATTGAGATAGCTTTAGC
1 TATGTATGGCACTTAGTGTGCGAGATTGA-ATAGCTTCGGC
* ** *
71433306 TATATAAAGCACTTAGTGT--GTGATTCGGAATAGCTTCGGC
1 TATGTATGGCACTTAGTGTGCGAGATT--GAATAGCTTCGGC
* *
71433346 TATGTATGGCACTTAGTGTGCGAGACTGAGATAGCTTCGGT
1 TATGTATGGCACTTAGTGTGCGAGATTGA-ATAGCTTCGGC
* *
71433387 TATGAAAT-GCACTTAGTGTGCGAGATTGCAATAGCTTCAGC
1 TATG-TATGGCACTTAGTGTGCGAGATTG-AATAGCTTCGGC
*
71433428 TATGCTTTGGCACTTAGTGTGCGAGAT
1 TATG-TATGGCACTTAGTGTGCGAGAT
71433455 ATCGAGTATT
Statistics
Matches: 119, Mismatches: 21, Indels: 16
0.76 0.13 0.10
Matches are distributed among these distances:
38 1 0.01
39 3 0.03
40 41 0.34
41 49 0.41
42 25 0.21
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (40 bp):
TATGTATGGCACTTAGTGTGCGAGATTGAATAGCTTCGGC
Found at i:71435729 original size:40 final size:39
Alignment explanation
Indices: 71435618--71435768 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
71435608 TTAATCACGT
* * *
71435618 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
71435658 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
71435698 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
71435738 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
71435769 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:71435752 original size:80 final size:79
Alignment explanation
Indices: 71435618--71435768 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
71435608 TTAATCACGT
*
71435618 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
71435683 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
71435698 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
71435761 CCGGATAT
64 CCGGATAT
71435769 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:71443623 original size:39 final size:40
Alignment explanation
Indices: 71443579--71443744 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
71443569 CGGAATATAA
71443579 CCGGAT-TAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
71443618 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
71443658 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
71443698 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
71443737 CCGGATAT
1 CCGGATAT
71443745 CATTCAATTT
Statistics
Matches: 106, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 20 0.19
40 86 0.81
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:71443728 original size:80 final size:79
Alignment explanation
Indices: 71443594--71443744 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
71443584 TTAATCACGT
*
71443594 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
71443659 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
71443674 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
71443737 CCGGATAT
64 CCGGATAT
71443745 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:71449091 original size:40 final size:39
Alignment explanation
Indices: 71448923--71449107 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 39
71448913 AGAAATTGAA
* *
71448923 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
71448963 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
71449003 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
71449043 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
71449083 TGATATCCGGG-TAAGTCCCGTAGGC
1 TGATATCCGGGCTAAGACCCGAAGGC
71449108 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 19, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 16 0.13
40 95 0.80
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:71454727 original size:28 final size:28
Alignment explanation
Indices: 71454693--71454841 Score: 136
Period size: 28 Copynumber: 5.2 Consensus size: 28
71454683 AACCGATCTT
*
71454693 GCACACACAGTGCTTGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
**** * *
71454721 GCACACACAGTGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTCGGTTACGGAACTC
71454750 GCACACACAGTGCTCGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
**** * *
71454778 GCACACACAGTGTCCTCAACAACCGATCTC
1 GCACACACAGTG--CTCGGTTACGGAACTC
*
71454808 GCACACACAGTGCTCGATTACGGAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
*
71454836 ACACAC
1 GCACAC
71454842 GCATGCCTAT
Statistics
Matches: 93, Mismatches: 25, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
28 50 0.54
29 21 0.23
30 22 0.24
ACGTcount: A:0.29, C:0.36, G:0.19, T:0.17
Consensus pattern (28 bp):
GCACACACAGTGCTCGGTTACGGAACTC
Found at i:71454809 original size:30 final size:29
Alignment explanation
Indices: 71454663--71454820 Score: 140
Period size: 28 Copynumber: 5.4 Consensus size: 29
71454653 GATCTCATTT
* *
71454663 CACACACTTAGTGCCCCAACAACCGATCTTG
1 CACACAC--AGTGCCTCAACAACCGATCTCG
***** * *
71454694 CACACACAGTG-CTTGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
71454722 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
**** * *
71454751 CACACACAGTG-CTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
71454779 CACACACAGTGTCCTCAACAACCGATCTCG
1 CACACACAGTG-CCTCAACAACCGATCTCG
71454809 CACACACAGTGC
1 CACACACAGTGC
71454821 TCGATTACGG
Statistics
Matches: 96, Mismatches: 28, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
28 41 0.43
29 26 0.27
30 22 0.23
31 7 0.07
ACGTcount: A:0.28, C:0.37, G:0.18, T:0.17
Consensus pattern (29 bp):
CACACACAGTGCCTCAACAACCGATCTCG
Found at i:71454820 original size:58 final size:57
Alignment explanation
Indices: 71454663--71454849 Score: 286
Period size: 57 Copynumber: 3.2 Consensus size: 57
71454653 GATCTCATTT
* * *
71454663 CACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
71454722 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* *
71454779 CACACACAGTGTCCTCAACAACCGATCTCGCACACACAGTGCTCGATTACGGAACTCA
1 CACACACAGTG-CCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
*
71454837 CACACGCA-TGCCT
1 CACACACAGTGCCT
71454850 ATGTTCACTT
Statistics
Matches: 121, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
56 3 0.02
57 60 0.50
58 51 0.42
59 7 0.06
ACGTcount: A:0.28, C:0.36, G:0.18, T:0.18
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
Found at i:71456002 original size:20 final size:20
Alignment explanation
Indices: 71455977--71456016 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
71455967 AAATTTTATC
*
71455977 TTATAACCATTTTTTAAAAA
1 TTATAACCATTTTCTAAAAA
**
71455997 TTATAATGATTTTCTAAAAA
1 TTATAACCATTTTCTAAAAA
71456017 CAGAACAGGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (20 bp):
TTATAACCATTTTCTAAAAA
Found at i:71456926 original size:28 final size:28
Alignment explanation
Indices: 71456821--71456926 Score: 151
Period size: 28 Copynumber: 3.8 Consensus size: 28
71456811 GAATCATTCG
* *
71456821 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
71456849 ATATCTCGCACACTAAGTG-CATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
71456876 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
71456904 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
71456927 ATTTGATTGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 25 0.35
28 47 0.65
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:71460286 original size:40 final size:40
Alignment explanation
Indices: 71460198--71460349 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
71460188 AAATTGAATG
* * * ** *
71460198 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCACT
* * * **
71460238 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCACT
*
71460278 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCACT
* *
71460318 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
71460350 AAATCGTGAT
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 86 0.95
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCACT
Found at i:71467749 original size:68 final size:67
Alignment explanation
Indices: 71467559--71467754 Score: 180
Period size: 68 Copynumber: 2.9 Consensus size: 67
71467549 AAGATGTTTA
* ** * * * * *
71467559 AGGTGTAAGACCATGGCTCGGCTATGGCATTCATTAGAA-TTTTCCAAGACACTAAACATGGGGA
1 AGGTGTAAGACCATAGCTCAACTATGACATTCATTA-AAGTCTGCC-AGACATTAAACATGAGGA
71467623 ATAC
64 ATAC
* * * * * *
71467627 AGGTGTAAGACCATAGCTCAATTATGACA-TCTGTTAAAGCCTGTCATATTATTAAACATGAGGA
1 AGGTGTAAGACCATAGCTCAACTATGACATTC-ATTAAAGTCTGCCAGA-CATTAAACATGAGGA
*
71467691 TTAC
64 ATAC
* *
71467695 AGGTGTAAGACCATAGTTCAACTATGTCATTCATTAAAGTCTGCCAGGACATTAAACATG
1 AGGTGTAAGACCATAGCTCAACTATGACATTCATTAAAGTCTGCCA-GACATTAAACATG
71467755 GAGATTATTG
Statistics
Matches: 100, Mismatches: 23, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
67 6 0.06
68 91 0.91
69 3 0.03
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (67 bp):
AGGTGTAAGACCATAGCTCAACTATGACATTCATTAAAGTCTGCCAGACATTAAACATGAGGAAT
AC
Found at i:71472254 original size:28 final size:27
Alignment explanation
Indices: 71472191--71472260 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
71472181 ATAGTGAGTC
71472191 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
71472218 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
71472246 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71472261 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:71474767 original size:17 final size:17
Alignment explanation
Indices: 71474728--71474767 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
71474718 ATGGCAAGCC
*
71474728 CGTGTGGATCACACGGG
1 CGTGTGGATCACACAGG
*
71474745 CTTGTGGATCACACAGG
1 CGTGTGGATCACACAGG
71474762 CGTGTG
1 CGTGTG
71474768 ATCTACCCGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.17, C:0.23, G:0.38, T:0.23
Consensus pattern (17 bp):
CGTGTGGATCACACAGG
Found at i:71476640 original size:6 final size:6
Alignment explanation
Indices: 71476622--71476665 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
71476612 ATATAAAGAC
* *
71476622 AAAATA AATATA AAAATA AAAATA AAAATA AAAATA AAGATA AA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AA
71476666 TGGACTCAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:71482900 original size:22 final size:22
Alignment explanation
Indices: 71482857--71482900 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
71482847 AGTTGGCCTT
71482857 AGCCCAAACAGAAGTCAGAATAA
1 AGCCCAAACAGAAG-CAGAATAA
71482880 AGCCCATAACAGAA-CAGAATA
1 AGCCCA-AACAGAAGCAGAATA
71482901 GATACTACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 6 0.30
24 7 0.35
ACGTcount: A:0.52, C:0.23, G:0.16, T:0.09
Consensus pattern (22 bp):
AGCCCAAACAGAAGCAGAATAA
Found at i:71483085 original size:27 final size:27
Alignment explanation
Indices: 71483031--71483141 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
71483021 AGCATGGCTG
** * *
71483031 CCAGAACAGATAA-TGTGATAGTGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
71483057 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
71483084 CCAGAATAGAT-ATATGTGGCAGTGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
71483111 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
71483138 CCAG
1 CCAG
71483142 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 15 0.21
27 55 0.76
28 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:71483121 original size:54 final size:53
Alignment explanation
Indices: 71483031--71483141 Score: 159
Period size: 54 Copynumber: 2.1 Consensus size: 53
71483021 AGCATGGCTG
* *
71483031 CCAGAACAGATAATGTGATAGTGTCACCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGTGCCACCAGAACAGATAATTGTGGCAGAGCCA
* * * *
71483084 CCAGAATAGATATATGTGGCAGTGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGTGCCACCAGAACAGATAATTGTGGCAGAGCCA
71483138 CCAG
1 CCAG
71483142 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 11 0.22
54 40 0.78
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGTGCCACCAGAACAGATAATTGTGGCAGAGCCA
Found at i:71484653 original size:24 final size:24
Alignment explanation
Indices: 71484577--71484641 Score: 121
Period size: 24 Copynumber: 2.7 Consensus size: 24
71484567 CCAACACCGT
*
71484577 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
71484601 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
71484625 TCTCCCTTATCAGCTCC
1 TCTCCCTTATCAGCTCC
71484642 CATATCTTCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.20, C:0.43, G:0.05, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:71491318 original size:28 final size:27
Alignment explanation
Indices: 71491255--71491324 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
71491245 ATAGTGAGTC
71491255 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
71491282 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
71491310 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71491325 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:71496867 original size:40 final size:40
Alignment explanation
Indices: 71496801--71496943 Score: 121
Period size: 40 Copynumber: 3.6 Consensus size: 40
71496791 AAATTGAATG
* * * *
71496801 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
71496840 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ** *
71496880 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
*
71496920 CTATCCGGGCT-AGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
71496944 TTTGTGCACG
Statistics
Matches: 86, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
39 27 0.31
40 59 0.69
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:71496944 original size:39 final size:39
Alignment explanation
Indices: 71496839--71496966 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
71496829 TGCTGGAAAT
* * *
71496839 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
71496879 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
71496919 TCTATCCGGGCT-AGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
71496958 TATATCCGG
1 TATATCCGG
71496967 TTATATTCCG
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 32 0.42
40 44 0.57
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:71502396 original size:28 final size:27
Alignment explanation
Indices: 71502333--71502402 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
71502323 ATAGTGAGTC
71502333 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
71502360 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
71502388 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71502403 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:71505904 original size:19 final size:19
Alignment explanation
Indices: 71505880--71505919 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
71505870 TATACTTGCC
71505880 CCGACAACCCTTTCTAGAA
1 CCGACAACCCTTTCTAGAA
71505899 CCGACAACCCTTTCTAGAA
1 CCGACAACCCTTTCTAGAA
71505918 CC
1 CC
71505920 CAAAGCATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.40, G:0.10, T:0.20
Consensus pattern (19 bp):
CCGACAACCCTTTCTAGAA
Found at i:71507317 original size:27 final size:26
Alignment explanation
Indices: 71507247--71507356 Score: 96
Period size: 27 Copynumber: 4.1 Consensus size: 26
71507237 AAGCCCATAA
* * *
71507247 CAGAACAGATAATGTGACAGTGTCAC
1 CAGAACAGATAATGTGGCAGAGCCAC
*
71507273 CAGAACAGATAATTGTGGCGGAGCCAC
1 CAGAACAGATAA-TGTGGCAGAGCCAC
*
71507300 CAGAACAGATATATGTGGTAGTA-CCAC
1 CAGAACAGATA-ATGTGGCAG-AGCCAC
* * * *
71507327 TAGATCAGATAATTATGGCATAGCCAC
1 CAGAACAGATAA-TGTGGCAGAGCCAC
71507354 CAG
1 CAG
71507357 GACGCTTCCT
Statistics
Matches: 67, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
26 14 0.21
27 51 0.76
28 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGAACAGATAATGTGGCAGAGCCAC
Found at i:71507337 original size:54 final size:53
Alignment explanation
Indices: 71507247--71507356 Score: 130
Period size: 54 Copynumber: 2.1 Consensus size: 53
71507237 AAGCCCATAA
** * *
71507247 CAGAACAGATAATGTGACAGTGTCACCAGAACAGATAATTGTGGCGGAGCCAC
1 CAGAACAGATAATGTGACAGTACCACCAGAACAGATAATTATGGCAGAGCCAC
** * * *
71507300 CAGAACAGATATATGTGGTAGTACCACTAGATCAGATAATTATGGCATAGCCAC
1 CAGAACAGATA-ATGTGACAGTACCACCAGAACAGATAATTATGGCAGAGCCAC
71507354 CAG
1 CAG
71507357 GACGCTTCCT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 11 0.23
54 36 0.77
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (53 bp):
CAGAACAGATAATGTGACAGTACCACCAGAACAGATAATTATGGCAGAGCCAC
Found at i:71510156 original size:40 final size:40
Alignment explanation
Indices: 71510112--71510262 Score: 232
Period size: 40 Copynumber: 3.8 Consensus size: 40
71510102 GGATATAGCT
*
71510112 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
71510152 ACTCGCACAAATGCCTTCGGCACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* * *
71510192 ACTCACACAAATGCCTTCAGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
71510232 ACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG
71510263 TTATCATCGA
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
39 2 0.02
40 96 0.96
41 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:71510240 original size:80 final size:80
Alignment explanation
Indices: 71510100--71510262 Score: 256
Period size: 80 Copynumber: 2.0 Consensus size: 80
71510090 CGGGATTTAA
* * * *
71510100 CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATG
1 CCGGATATAGCTACTCACACAAATGCCTTCAGGACTTAGCCCGGAATTAGTAACTAGCACAAATG
71510165 CCTTCGGCACTTAGC
66 CCTTCGGCACTTAGC
*
71510180 CCGGATATAG-TAACTCACACAAATGCCTTCAGGACTTAGCCCGGAATTAGTCACTAGCACAAAT
1 CCGGATATAGCT-ACTCACACAAATGCCTTCAGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
*
71510244 GCCTTCGGGACTTAGC
65 GCCTTCGGCACTTAGC
71510260 CCG
1 CCG
71510263 TTATCATCGA
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
79 1 0.01
80 75 0.99
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (80 bp):
CCGGATATAGCTACTCACACAAATGCCTTCAGGACTTAGCCCGGAATTAGTAACTAGCACAAATG
CCTTCGGCACTTAGC
Found at i:71517087 original size:40 final size:40
Alignment explanation
Indices: 71517025--71517279 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
71517015 AAACCAAGTA
* * *
71517025 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
** *
71517064 CCTTCGGGACTTAGCCCGGATATAGTAGTTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
71517104 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
71517144 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
71517184 CCTTC-GGACTTAGCCC-GATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
71517222 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
71517262 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
71517280 TTATCATCCG
Statistics
Matches: 198, Mismatches: 11, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 25 0.13
39 38 0.19
40 135 0.68
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:71517234 original size:118 final size:120
Alignment explanation
Indices: 71517051--71517279 Score: 374
Period size: 118 Copynumber: 1.9 Consensus size: 120
71517041 GGATATAGCT
* ** *
71517051 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTTGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
*
71517116 AGCCCGG-ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
66 AGCCCGGAAT-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
71517171 ACTCGCACAAATGCCTTC-GGACTTAGCCC-GATATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
*
71517234 AGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
66 AGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCG
71517280 TTATCATCCG
Statistics
Matches: 102, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
118 72 0.71
119 13 0.13
120 17 0.17
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:71517243 original size:78 final size:79
Alignment explanation
Indices: 71517025--71517279 Score: 381
Period size: 78 Copynumber: 3.2 Consensus size: 79
71517015 AAACCAAGTA
* * * *
71517025 CCTTCGGGATTTAACCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATA
1 CCTTCGGGACTTAGCCCGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
** *
71517088 GTAGTTTGCACAAATG
64 GTAACTAGCACAAATG
71517104 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
71517169 TAACTCGCACAAATG
65 TAACTAGCACAAATG
71517184 CCTTC-GGACTTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 CCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
*
71517248 CACTAGCACAAATG
66 AACTAGCACAAATG
71517262 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
71517280 TTATCATCCG
Statistics
Matches: 163, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
78 65 0.40
79 38 0.23
80 58 0.36
81 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
AACTAGCACAAATG
Found at i:71519049 original size:24 final size:24
Alignment explanation
Indices: 71519022--71519098 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
71519012 CCAACACCGT
*
71519022 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
71519046 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
71519070 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
71519094 TCTCC
1 TCTCC
71519099 TGACAGCCTT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.21, C:0.43, G:0.04, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:71533325 original size:40 final size:40
Alignment explanation
Indices: 71533256--71533349 Score: 95
Period size: 40 Copynumber: 2.4 Consensus size: 40
71533246 CGAAAGTGTT
* *
71533256 TGGCACTAAGTGTGCGGTTTAATAAAGCTTCGGCTACA-AA
1 TGGCACTAAGTGTGCGGTTGAAT-AAGCTTCAGCTACATAA
* * *
71533296 TGGCACTAAGTGTGCGAGTTGGCAT-AGCTTCAGCTATATGA
1 TGGCACTAAGTGTGCG-GTT-GAATAAGCTTCAGCTACATAA
71533337 -GGCACTAAGTGTG
1 TGGCACTAAGTGTG
71533350 AGATATCGAC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
40 40 0.87
41 4 0.09
42 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (40 bp):
TGGCACTAAGTGTGCGGTTGAATAAGCTTCAGCTACATAA
Found at i:71543535 original size:40 final size:39
Alignment explanation
Indices: 71543370--71543553 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
71543360 AAATTGAATG
* * *
71543370 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
71543410 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
71543450 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
71543490 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
71543529 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
71543554 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:71543578 original size:80 final size:81
Alignment explanation
Indices: 71543410--71543598 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
71543400 GCTGGAAATT
* * * *
71543410 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
71543475 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
71543491 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
71543554 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
71543570 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
71543599 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:71551266 original size:40 final size:39
Alignment explanation
Indices: 71551102--71551284 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
71551092 AAATTGAATG
* *
71551102 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
71551141 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
71551181 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
71551221 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
71551260 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
71551285 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 15 0.13
40 92 0.81
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:71551309 original size:80 final size:81
Alignment explanation
Indices: 71551141--71551329 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
71551131 GCTGGAAATT
* * * *
71551141 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
71551206 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
71551222 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
71551285 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
71551301 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
71551330 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:71555256 original size:2 final size:2
Alignment explanation
Indices: 71555249--71555279 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
71555239 CAAAATGTCA
71555249 AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71555280 CGAATATACA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:71565394 original size:27 final size:27
Alignment explanation
Indices: 71565356--71565467 Score: 156
Period size: 27 Copynumber: 4.1 Consensus size: 27
71565346 TGCAACAGTC
*
71565356 ATTTTACCCTAC-AGTGGTATTTCGGTA
1 ATTTTACACTACAAG-GGTATTTCGGTA
*
71565383 ATTTTACACTACAA-GATGATTTCGGTA
1 ATTTTACACTACAAGGGT-ATTTCGGTA
*
71565410 ATTTTACACTACAAGGGTATTTTGGTA
1 ATTTTACACTACAAGGGTATTTCGGTA
*
71565437 ATTTTACACTATAAGGGTATTTCGGTA
1 ATTTTACACTACAAGGGTATTTCGGTA
71565464 ATTT
1 ATTT
71565468 ACAAACCAGG
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.03
27 71 0.93
28 3 0.04
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGGTA
Found at i:71565848 original size:17 final size:18
Alignment explanation
Indices: 71565826--71565859 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
71565816 TTTATCCGTG
71565826 TGGGCCCACA-AGCCCAT
1 TGGGCCCACACAGCCCAT
71565843 TGGGCCCACACAGCCCA
1 TGGGCCCACACAGCCCA
71565860 GTCTGGCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.24, C:0.44, G:0.24, T:0.09
Consensus pattern (18 bp):
TGGGCCCACACAGCCCAT
Found at i:71565977 original size:21 final size:21
Alignment explanation
Indices: 71565947--71566006 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
71565937 GATTTGACAC
71565947 AAGCAGGCCCATTGGGCCACT
1 AAGCAGGCCCATTGGGCCACT
*
71565968 AAGTAGGCCCATTGGGCCACT
1 AAGCAGGCCCATTGGGCCACT
*
71565989 AAGCGGGCCCATTGGGCC
1 AAGCAGGCCCATTGGGCC
71566007 TACTTGGCCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.22, C:0.32, G:0.32, T:0.15
Consensus pattern (21 bp):
AAGCAGGCCCATTGGGCCACT
Found at i:71573511 original size:40 final size:40
Alignment explanation
Indices: 71573426--71573576 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
71573416 AATTGAATGA
* * *
71573426 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
71573466 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
71573507 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
71573546 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
71573577 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:71573590 original size:40 final size:40
Alignment explanation
Indices: 71573463--71573592 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
71573453 ATGCTGGAAA
* * * *
71573463 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
71573503 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
71573543 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
71573583 TTATATCCGG
1 TTATATCCGG
71573593 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:71584006 original size:28 final size:27
Alignment explanation
Indices: 71583943--71584012 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
71583933 ATAGTGAGTC
71583943 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
71583970 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
71583998 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71584013 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:71591735 original size:28 final size:27
Alignment explanation
Indices: 71591672--71591741 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
71591662 ATAGTGAGTC
71591672 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
71591699 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
71591727 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71591742 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:71594038 original size:50 final size:47
Alignment explanation
Indices: 71593935--71594290 Score: 164
Period size: 46 Copynumber: 7.6 Consensus size: 47
71593925 TGCAGGTGTT
* ** *
71593935 GATGCCATGTCCCAGAAATGTCTTACACTGGCACTCATCTCAATGTC
1 GATGCCATGTCCCAGACATGTCTTACACAAGCACTCATATCAATGTC
* * *
71593982 GATGCCATGTTCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTC
1 GATGCCATGTCCCAGACAT-GTCTTACACAAGCACT--CATATCAATGTC
* ** *
71594032 GATGCCATGTCCCAGACATAGTCTTACAC-TGACAGCTC-T-TGTA-GTT
1 GATGCCATGTCCCAGACAT-GTCTTACACAAG-CA-CTCATATCAATGTC
** * * * * * *
71594078 GATG-CATGTCCCAGACATGTCTTACA-TTG-GCTTATGTCTTGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACAAGCACTCATATC--AATGTC
* * *
71594124 GATGCCATGTCCCAGACATGGTCTTACAC-TGACAC-C-TCTC-ATAGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACAAG-CACTCATATCAAT-GTC
* *** * * * * *
71594170 GATG-CATGTCCCAGATATGTCTTACATTGGC-TTACGTCTCAAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACAAGCACT-CATATCAATGTC
* ** * * *
71594216 AATG-CATGTCCTGGACATGTCTTACACTAGCACTCATCTCAATGCC
1 GATGCCATGTCCCAGACATGTCTTACACAAGCACTCATATCAATGTC
71594262 GATGCCATGTCCCAGACATGGTCTTACAC
1 GATGCCATGTCCCAGACAT-GTCTTACAC
71594291 TGACACCTCT
Statistics
Matches: 244, Mismatches: 40, Indels: 49
0.73 0.12 0.15
Matches are distributed among these distances:
41 2 0.01
42 1 0.00
43 1 0.00
44 19 0.08
45 31 0.13
46 63 0.26
47 48 0.20
48 36 0.15
49 2 0.01
50 39 0.16
51 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACAAGCACTCATATCAATGTC
Found at i:71594138 original size:92 final size:91
Alignment explanation
Indices: 71593935--71594430 Score: 364
Period size: 92 Copynumber: 5.3 Consensus size: 91
71593925 TGCAGGTGTT
* * * *
71593935 GATGCCATGTCCCAGAAATGTCTTACACTGGCACTCATCTCA-ATGTCGATGCCATGTTCCAGAC
1 GATGCCATGTCCCAGACATGTCTTACACTGACAC-C-TCTCATA-GCCGATG-CATGTCCCAGAC
*** * * * * *
71593999 ATGGTCTTACACAAGCTCTAGCATATCTATGTC
62 AT-GTCTTACATTGGCT-TA-CGTCTCAAGGCC
* ** **
71594032 GATGCCATGTCCCAGACATAGTCTTACACTGACAGCTCTTGTAGTTGATGCATGTCCCAGACATG
1 GATGCCATGTCCCAGACAT-GTCTTACACTGACACCTCTCATAGCCGATGCATGTCCCAGACATG
* **
71594097 TCTTACATTGGCTTATGTCTTGAGGCC
65 TCTTACATTGGCTTACGTCTCAAGGCC
*
71594124 GATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTCATAGCCGATGCATGTCCCAGATATG
1 GATGCCATGTCCCAGACAT-GTCTTACACTGACACCTCTCATAGCCGATGCATGTCCCAGACATG
71594189 TCTTACATTGGCTTACGTCTCAAGGCC
65 TCTTACATTGGCTTACGTCTCAAGGCC
* **
71594216 AATG-CATGTCCTGGACATGTCTTACACT-AGCACTCATCTCA-ATGCCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGTCTTACACTGA-CAC-C-TCTCATA-GCCGATG-CATGTCCCAGA
* * *
71594278 CATGGTCTTACACTGAC--ACCTCTCATA-GCC
61 CAT-GTCTTACATTGGCTTACGTCTCA-AGGCC
* * * * * *
71594308 AATG-CATGTCCCAGATATGTCTTACATTGGCTTACGTCTCGA-GGCCGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGTCTTACACTGAC--ACCTCTC-ATAGCCGATGCATGTCCCAGACA
* * * * *
71594371 TGTCTTACACTAGCACT-CGTCTCAATGCT
63 TGTCTTACATTGGC-TTACGTCTCAAGGCC
* * *
71594400 GACGCTATATCCCAGACATGGTCTTACACTG
1 GATGCCATGTCCCAGACAT-GTCTTACACTG
71594431 GCTCTCATAA
Statistics
Matches: 329, Mismatches: 51, Indels: 41
0.78 0.12 0.10
Matches are distributed among these distances:
89 1 0.00
90 24 0.07
91 29 0.09
92 158 0.48
93 28 0.09
94 34 0.10
95 13 0.04
96 9 0.03
97 20 0.06
98 13 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (91 bp):
GATGCCATGTCCCAGACATGTCTTACACTGACACCTCTCATAGCCGATGCATGTCCCAGACATGT
CTTACATTGGCTTACGTCTCAAGGCC
Found at i:71594210 original size:46 final size:46
Alignment explanation
Indices: 71594078--71594433 Score: 323
Period size: 46 Copynumber: 7.7 Consensus size: 46
71594068 TCTTGTAGTT
* * **
71594078 GATGCATGTCCCAGACATGTCTTACATTGGCTTATGTCTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGGCC
* *
71594124 GATGCCATGTCCCAGACATGGTCTTACACTGAC--ACCTCTCATA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCA-AGGCC
* *
71594170 GATGCATGTCCCAGATATGTCTTACATTGGCTTACGTCTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGGCC
* ** * * * *
71594216 AATGCATGTCCTGGACATGTCTTACACTAGCACT-CATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCAAGGCC
* *
71594262 GATGCCATGTCCCAGACATGGTCTTACACTGAC--ACCTCTCATA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCA-AGGCC
* * * *
71594308 AATGCATGTCCCAGATATGTCTTACATTGGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGGCC
* * * *
71594354 GATGCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCAAGGCC
* *
71594400 GACGCTATATCCCAGACATGGTCTTACACTGGCT
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGGCT
71594434 CTCATAATGT
Statistics
Matches: 250, Mismatches: 43, Indels: 33
0.77 0.13 0.10
Matches are distributed among these distances:
44 22 0.09
45 28 0.11
46 124 0.50
47 42 0.17
48 34 0.14
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGGCC
Done.