Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 241 of 770
Found at i:72170078 original size:81 final size:82
Alignment explanation
Indices: 72169914--72170151 Score: 208
Period size: 81 Copynumber: 2.9 Consensus size: 82
72169904 ATACCTTTGG
* * * *
72169914 TTTACAATATTACCAAAATACCCTCGA-TTAGCAAAATTA-CTAAAATACCCCT-AGTTTGTAAA
1 TTTACAAAATTACCAAAATACCCTTGATTTAG-AAAATTATC-AAAATA-CCTTGA-TTTGCAAA
*
72169976 ATTACCA-AAATA-CCCTCGA
62 ATTACTAGAAATACCCCTCGA
** * *
72169995 TTTGTAAAATTACCAAAATACCCTTGATTTAGAAAATTATCGAAATATCCTTGATTTGGAAAATT
1 TTTACAAAATTACCAAAATACCCTTGATTTAGAAAATTATCAAAATA-CCTTGATTTGCAAAATT
72170060 A-TAGAAATACCCCT-GA
65 ACTAGAAATACCCCTCGA
* * * *
72170076 TTTACAAAATTA-TAGAAATACCCTTAACTTTCA-AAAATTATAAAAATACCATTGGTTTGCAAA
1 TTTACAAAATTACCA-AAATACCCTTGA-TTT-AGAAAATTATCAAAATACC-TTGATTTGCAAA
72170139 ATTACT-GAAATAC
62 ATTACTAGAAATAC
72170152 TCTTAGTTTG
Statistics
Matches: 130, Mismatches: 17, Indels: 19
0.78 0.10 0.11
Matches are distributed among these distances:
80 2 0.02
81 79 0.61
82 47 0.36
83 2 0.02
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.32
Consensus pattern (82 bp):
TTTACAAAATTACCAAAATACCCTTGATTTAGAAAATTATCAAAATACCTTGATTTGCAAAATTA
CTAGAAATACCCCTCGA
Found at i:72171206 original size:27 final size:27
Alignment explanation
Indices: 72171123--72171206 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
72171113 AGCATGGCTG
* *
72171123 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
72171149 CCAAAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
72171176 CCAGAACAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
72171203 CCAG
1 CCAG
72171207 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 12 0.24
27 38 0.76
ACGTcount: A:0.39, C:0.24, G:0.23, T:0.14
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:72171645 original size:16 final size:15
Alignment explanation
Indices: 72171624--72171653 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
72171614 AAAATACCGA
72171624 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
72171640 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
72171654 CTGATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:72173807 original size:93 final size:93
Alignment explanation
Indices: 72173695--72173866 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72173685 CGCCCATAAG
* *
72173695 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72173760 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
72173788 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72173853 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72173867 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72173863 original size:46 final size:46
Alignment explanation
Indices: 72173688--72173863 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
72173678 TGTAACCCGC
* * *
72173688 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
72173734 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
72173784 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72173827 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72173864 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72181283 original size:45 final size:46
Alignment explanation
Indices: 72181219--72181393 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
72181209 TGTAACCCGC
*
72181219 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
72181264 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* *
72181314 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
72181357 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72181394 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 36 0.32
46 29 0.26
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:72181384 original size:93 final size:92
Alignment explanation
Indices: 72181226--72181396 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
72181216 CGCCCATAAG
*
72181226 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72181291 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
72181318 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72181383 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
72181397 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 28 0.37
93 48 0.63
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72183643 original size:41 final size:41
Alignment explanation
Indices: 72183598--72183719 Score: 183
Period size: 41 Copynumber: 3.0 Consensus size: 41
72183588 GGAGGAAGAA
* *
72183598 ATTGAGGATCGCATGGTTACTTGACAACCGTGGATCCA-CTG
1 ATTGAGGATCGCATGGTTGCTTGATAACCGTGGATCCATC-G
* *
72183639 ATTGAGGATCACATGGTTGCTTGATGACCGTGGATCCATCG
1 ATTGAGGATCGCATGGTTGCTTGATAACCGTGGATCCATCG
*
72183680 ATTAAGGATCGCATGGTTGCTTGATAACCGTGGATCCATC
1 ATTGAGGATCGCATGGTTGCTTGATAACCGTGGATCCATC
72183720 AGTGGCTTTT
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
41 72 0.99
42 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGATAACCGTGGATCCATCG
Found at i:72184152 original size:22 final size:22
Alignment explanation
Indices: 72184127--72184173 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
72184117 ATTGATGCGA
* *
72184127 TGTTTACGGTTATGTGCTGTCC
1 TGTTTACGGCTATGTGCTATCC
72184149 TGTTTACGGCTATGTGCTATCC
1 TGTTTACGGCTATGTGCTATCC
72184171 TGT
1 TGT
72184174 CTATGGCGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.11, C:0.19, G:0.26, T:0.45
Consensus pattern (22 bp):
TGTTTACGGCTATGTGCTATCC
Found at i:72184303 original size:21 final size:22
Alignment explanation
Indices: 72184262--72184308 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
72184252 GATCCCCACA
72184262 TGGTGTGCTGGTTGGTATGGG-
1 TGGTGTGCTGGTTGGTATGGGC
*
72184283 TGGTGTGTTGGTTGG-ATTGGGC
1 TGGTGTGCTGGTTGGTA-TGGGC
72184305 TGGT
1 TGGT
72184309 AATCTGTCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 18 0.78
22 4 0.17
ACGTcount: A:0.04, C:0.04, G:0.51, T:0.40
Consensus pattern (22 bp):
TGGTGTGCTGGTTGGTATGGGC
Found at i:72184473 original size:175 final size:175
Alignment explanation
Indices: 72184182--72184532 Score: 684
Period size: 175 Copynumber: 2.0 Consensus size: 175
72184172 GTCTATGGCG
*
72184182 TTGAGCCGTCCTGTTGACTTAGTGCCGCAATCAGTGCTAAGCTTGGTGTGTTGGTTGGTTAGGTC
1 TTGAGCCGTCCTGTTGACTTAGTGCCGCAATCAGTGCTAAGCTTGGTGTGTTGGCTGGTTAGGTC
*
72184247 GATTTGATCCCCACATGGTGTGCTGGTTGGTATGGGTGGTGTGTTGGTTGGATTGGGCTGGTAAT
66 GATTTGATCCCCACATGGTGTGCTGGTTGGTATGGGTGGTGTGTTGGTTGGATTGGGCTGGAAAT
72184312 CTGTCTGCATATCTGCATATGATATTGATTCTGTAATGGGCTCTA
131 CTGTCTGCATATCTGCATATGATATTGATTCTGTAATGGGCTCTA
72184357 TTGAGCCGTCCTGTTGACTTAGTGCCGCAATCAGTGCTAAGCTTGGTGTGTTGGCTGGTTAGGTC
1 TTGAGCCGTCCTGTTGACTTAGTGCCGCAATCAGTGCTAAGCTTGGTGTGTTGGCTGGTTAGGTC
72184422 GATTTGATCCCCACATGGTGTGCTGGTTGGTATGGGTGGTGTGTTGGTTGGATTGGGCTGGAAAT
66 GATTTGATCCCCACATGGTGTGCTGGTTGGTATGGGTGGTGTGTTGGTTGGATTGGGCTGGAAAT
72184487 CTGTCTGCATATCTGCATATGATATTGATTCTGTAATGGGCTCTA
131 CTGTCTGCATATCTGCATATGATATTGATTCTGTAATGGGCTCTA
72184532 T
1 T
72184533 CCCAGACTGA
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
175 174 1.00
ACGTcount: A:0.16, C:0.16, G:0.32, T:0.37
Consensus pattern (175 bp):
TTGAGCCGTCCTGTTGACTTAGTGCCGCAATCAGTGCTAAGCTTGGTGTGTTGGCTGGTTAGGTC
GATTTGATCCCCACATGGTGTGCTGGTTGGTATGGGTGGTGTGTTGGTTGGATTGGGCTGGAAAT
CTGTCTGCATATCTGCATATGATATTGATTCTGTAATGGGCTCTA
Found at i:72188947 original size:44 final size:44
Alignment explanation
Indices: 72188897--72188987 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
72188887 TATTTTCACT
*
72188897 GAGTTCACTCTAGTACAATGGTGTTCGACATTTACGACCTTATA
1 GAGTTCACTCCAGTACAATGGTGTTCGACATTTACGACCTTATA
72188941 GAGTTCACTCCAGTACAATGGTGTTCGACATTTACGACCTTATA
1 GAGTTCACTCCAGTACAATGGTGTTCGACATTTACGACCTTATA
72188985 GAG
1 GAG
72188988 CTTTATACAG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (44 bp):
GAGTTCACTCCAGTACAATGGTGTTCGACATTTACGACCTTATA
Found at i:72189486 original size:252 final size:252
Alignment explanation
Indices: 72189041--72189547 Score: 996
Period size: 252 Copynumber: 2.0 Consensus size: 252
72189031 GTAAGAAAAT
72189041 TCAATCAACGGTAGATATTTCTCCCAGCTACCTTCAAACTCAAGAATACAACAACACAACATATC
1 TCAATCAACGGTAGATATTTCTCCCAGCTACCTTCAAACTCAAGAATACAACAACACAACATATC
72189106 CTCAAGTATCTGAATAACTCGTTCGAATTGACCATCCGTTTTCAGGTGAAATCCAATGCTAAAAT
66 CTCAAGTATCTGAATAACTCGTTCGAATTGACCATCCGTTTTCAGGTGAAATCCAATGCTAAAAT
72189171 GTAGTTTTGAACCCAAAGCTTCTTGTAATTTCTTCCAAAATCGTGAAGTAAATCTTGGATCTCTA
131 GTAGTTTTGAACCCAAAGCTTCTTGTAATTTCTTCCAAAATCGTGAAGTAAATCTTGGATCTCTA
72189236 TCCAAAATAATAGATAGAGGAACACCAAGTAATCTCACAATTTCAGAAATACACAAC
196 TCCAAAATAATAGATAGAGGAACACCAAGTAATCTCACAATTTCAGAAATACACAAC
72189293 TCAATCAACGGTAGATATTTCTCCCAGCTACCTTCAAACTCAAGAATACAACAACACAACATATC
1 TCAATCAACGGTAGATATTTCTCCCAGCTACCTTCAAACTCAAGAATACAACAACACAACATATC
* *
72189358 CTCAAGTATCTGAATAACTCGTTCGAATTGACTATCCGTTTTCGGGTGAAATCCAATGCTAAAAT
66 CTCAAGTATCTGAATAACTCGTTCGAATTGACCATCCGTTTTCAGGTGAAATCCAATGCTAAAAT
72189423 GTAGTTTTGAACCCAAAGCTTCTTGTAATTTCTTCCAAAATCGTGAAGTAAATCTTGGATCTCTA
131 GTAGTTTTGAACCCAAAGCTTCTTGTAATTTCTTCCAAAATCGTGAAGTAAATCTTGGATCTCTA
72189488 TCCAAAATAATAGATAGAGGAACACCAAGTAATCTCACAATTTCAGAAATACACAAC
196 TCCAAAATAATAGATAGAGGAACACCAAGTAATCTCACAATTTCAGAAATACACAAC
72189545 TCA
1 TCA
72189548 GCTAATCTAT
Statistics
Matches: 253, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
252 253 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.28
Consensus pattern (252 bp):
TCAATCAACGGTAGATATTTCTCCCAGCTACCTTCAAACTCAAGAATACAACAACACAACATATC
CTCAAGTATCTGAATAACTCGTTCGAATTGACCATCCGTTTTCAGGTGAAATCCAATGCTAAAAT
GTAGTTTTGAACCCAAAGCTTCTTGTAATTTCTTCCAAAATCGTGAAGTAAATCTTGGATCTCTA
TCCAAAATAATAGATAGAGGAACACCAAGTAATCTCACAATTTCAGAAATACACAAC
Found at i:72199254 original size:70 final size:71
Alignment explanation
Indices: 72199103--72199265 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
72199093 GAGATGTATC
72199103 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72199168 AGGACA
66 AGGACA
72199174 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
72199238 CGGACA
66 AGGACA
72199244 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72199266 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72205482 original size:71 final size:71
Alignment explanation
Indices: 72205394--72205557 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
72205384 GAGATGTATC
72205394 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72205459 AGGACA
66 AGGACA
*
72205465 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
72205530 CGGACA
66 AGGACA
72205536 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72205558 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72208804 original size:24 final size:24
Alignment explanation
Indices: 72208777--72208855 Score: 79
Period size: 24 Copynumber: 3.3 Consensus size: 24
72208767 GTTAGGACAT
* *
72208777 ATTAAATTAATCCACCAGTAGCTC
1 ATTAAATTAATCAACCAGCAGCTC
** *
72208801 ATTAAATTCGTCAACTAGCAGCTC
1 ATTAAATTAATCAACCAGCAGCTC
* *
72208825 ATTAAATCT-GTCAACCAGCAACTC
1 ATTAAAT-TAATCAACCAGCAGCTC
72208849 ATTAAAT
1 ATTAAAT
72208856 CTATCCAGGC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 46 0.98
25 1 0.02
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (24 bp):
ATTAAATTAATCAACCAGCAGCTC
Found at i:72208856 original size:24 final size:25
Alignment explanation
Indices: 72208798--72208857 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 25
72208788 CCACCAGTAG
* *
72208798 CTCATTAAAT-TCGTCAACTAGCAG
1 CTCATTAAATCTCGTCAACCAGCAA
72208822 CTCATTAAATCT-GTCAACCAGCAA
1 CTCATTAAATCTCGTCAACCAGCAA
72208846 CTCATTAAATCT
1 CTCATTAAATCT
72208858 ATCCAGGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 32 0.97
25 1 0.03
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (25 bp):
CTCATTAAATCTCGTCAACCAGCAA
Found at i:72213503 original size:31 final size:31
Alignment explanation
Indices: 72213465--72213580 Score: 162
Period size: 31 Copynumber: 3.7 Consensus size: 31
72213455 TAATGACAAT
* *
72213465 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTCCAGCTACCTGATCAG
*
72213496 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTCCAGCTACCTGATCAG
*
72213527 TGAAAGGTGGTAG-TACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCT-CCAGCTACCTGATCAG
* *
72213558 TGAATAGTGGTAGCTTCAGCTAC
1 TGAAAAGTGGTAGCTCCAGCTAC
72213581 AAGTGACAAG
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
30 1 0.01
31 75 0.97
32 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTCCAGCTACCTGATCAG
Found at i:72213653 original size:46 final size:46
Alignment explanation
Indices: 72213582--72213716 Score: 156
Period size: 42 Copynumber: 3.0 Consensus size: 46
72213572 TTCAGCTACA
* * *
72213582 AGTGACA-A-GTGATTTCTGTACAAGACCATATCTGGGATATGGCATC
1 AGTGACATATGTGATTTGTGT--AAGACCATAGCTGGGCTATGGCATC
72213628 AGTGACATATGTGATTTGTGTAAGACCATAGCTGGGCTATGGCATC
1 AGTGACATATGTGATTTGTGTAAGACCATAGCTGGGCTATGGCATC
* * *
72213674 ---GATATATG-AATATGTGTAAGACCATAGCTGGGCTATGGCATC
1 AGTGACATATGTGATTTGTGTAAGACCATAGCTGGGCTATGGCATC
72213716 A
1 A
72213717 TTATGTGTAG
Statistics
Matches: 80, Mismatches: 6, Indels: 9
0.84 0.06 0.09
Matches are distributed among these distances:
42 32 0.40
43 7 0.09
46 30 0.38
47 1 0.01
48 10 0.12
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (46 bp):
AGTGACATATGTGATTTGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:72213703 original size:42 final size:42
Alignment explanation
Indices: 72213603--72213759 Score: 154
Period size: 42 Copynumber: 3.6 Consensus size: 42
72213593 ATTTCTGTAC
* * * * *
72213603 AAGACCATATCTGGGATATGGCATCAGTGACATATGTGATTTGTGT
1 AAGACCATAGCTGGGCTATGGCATC---GATATATG-AATATGTGT
72213649 AAGACCATAGCTGGGCTATGGCATCGATATATGAATATGTGT
1 AAGACCATAGCTGGGCTATGGCATCGATATATGAATATGTGT
* * *
72213691 AAGACCATAGCTGGGCTATGGCATC-ATTATGTGTAGATGTGT
1 AAGACCATAGCTGGGCTATGGCATCGA-TATATGAATATGTGT
* * **
72213733 AAAACCATAGTTGAACTATGGCATCGA
1 AAGACCATAGCTGGGCTATGGCATCGA
72213760 GAAAACGAAG
Statistics
Matches: 97, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
41 1 0.01
42 65 0.67
43 8 0.08
46 23 0.24
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (42 bp):
AAGACCATAGCTGGGCTATGGCATCGATATATGAATATGTGT
Found at i:72221008 original size:14 final size:14
Alignment explanation
Indices: 72220989--72221018 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
72220979 GGTGTAAGAT
72220989 TTTTAAGTAAAATA
1 TTTTAAGTAAAATA
*
72221003 TTTTAAGTATAATA
1 TTTTAAGTAAAATA
72221017 TT
1 TT
72221019 AAATTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TTTTAAGTAAAATA
Found at i:72223214 original size:46 final size:46
Alignment explanation
Indices: 72223039--72223214 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
72223029 TGTAACCCGC
* * *
72223039 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
72223085 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG--ATGC-CTAGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A-T
* ** * * *
72223130 -TATATCTCTCGAGCTCGGACTCAACCCAACGAGTTCGGACATTCGCAT
1 CCATA--AGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
72223178 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
72223215 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 1 0.01
44 6 0.06
45 1 0.01
46 62 0.60
47 25 0.24
48 1 0.01
49 7 0.07
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:72224608 original size:49 final size:47
Alignment explanation
Indices: 72224434--72224749 Score: 456
Period size: 47 Copynumber: 6.7 Consensus size: 47
72224424 CCCTTCGGGA
* * * * *
72224434 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
72224481 CCTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
72224528 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACAT-TGGCCATTAGGC
*
72224575 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
72224624 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTAGGC
*
72224673 CTTATCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
72224719 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACTTTCACATTCATC
72224750 GCGTAAAATC
Statistics
Matches: 248, Mismatches: 14, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
46 44 0.18
47 114 0.46
48 1 0.00
49 89 0.36
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:72224630 original size:96 final size:93
Alignment explanation
Indices: 72224434--72224749 Score: 472
Period size: 96 Copynumber: 3.3 Consensus size: 93
72224424 CCCTTCGGGA
* * * * * *
72224434 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-
* *
72224499 CTTCACATTCATCACATTGGCCATTCGGC
65 CTTCACATTCATCACATCGGCCATTAGGC
*
72224528 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTCGGCCTTATCAC--ATATATA
72224592 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CAC-TTCACATTCATCACATCGGCCATTAGGC
72224624 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
72224689 ACTTCACATTCATCACATCGGCCATTAGGC
64 ACTTCACATTCATCACATCGGCCATTAGGC
*
72224719 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
72224750 GCGTAAAATC
Statistics
Matches: 204, Mismatches: 11, Indels: 15
0.89 0.05 0.07
Matches are distributed among these distances:
93 12 0.06
94 46 0.23
95 48 0.24
96 63 0.31
97 2 0.01
98 33 0.16
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (93 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTCACATTCATCACATCGGCCATTAGGC
Found at i:72228551 original size:43 final size:43
Alignment explanation
Indices: 72228490--72228838 Score: 601
Period size: 43 Copynumber: 8.1 Consensus size: 43
72228480 CCTTGCTCGA
** * *
72228490 ATCACCGGCATTAAGCCTGCTAAGCACGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
72228533 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* *
72228576 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
72228619 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCC-AATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* *
72228661 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGACCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
72228704 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
72228747 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
72228790 ATCACTGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
72228833 ATCACC
1 ATCACC
72228839 AGCATGACTG
Statistics
Matches: 291, Mismatches: 14, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
42 40 0.14
43 251 0.86
ACGTcount: A:0.33, C:0.32, G:0.22, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:72228785 original size:171 final size:172
Alignment explanation
Indices: 72228490--72228838 Score: 603
Period size: 171 Copynumber: 2.0 Consensus size: 172
72228480 CCTTGCTCGA
**
72228490 ATCACCGGCATTAAGCCTGCTAAGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
1 ATCACCGGCACAAAGCCTGCTAAGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
* *
72228555 GGCTCGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCTCGAAGACCCGAATACATA
66 GGCACGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCACGAAGACCCGAATACATA
72228620 TCACCGGCACAAAGCCTGCTAGGCACGAAGGCCC-AATACAT
131 TCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* *
72228661 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGA-CCGAATACATATCACCGGCACAAAGCCTGCT
1 ATCACCGGCACAAAGCCTGCTAAGCACGAA-GACCCGAATACATATCACCGGCACAAAGCCTGCT
*
72228725 AGGCACGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
65 AGGCACGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCACGAAGACCCGAATACAT
*
72228790 ATCACTGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
130 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
72228833 ATCACC
1 ATCACC
72228839 AGCATGACTG
Statistics
Matches: 168, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
171 153 0.91
172 15 0.09
ACGTcount: A:0.33, C:0.32, G:0.22, T:0.13
Consensus pattern (172 bp):
ATCACCGGCACAAAGCCTGCTAAGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
GGCACGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCACGAAGACCCGAATACATA
TCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:72228917 original size:40 final size:40
Alignment explanation
Indices: 72228831--72229031 Score: 215
Period size: 40 Copynumber: 5.0 Consensus size: 40
72228821 GCCCGAATAC
* * * * * *
72228831 ATATCACCAGCATGACTGCTC-TCGGAACCTGGTCCGGAT
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * *
72228870 ACATCACTAGCATGAATGCTCTTCGGGATTTAGCCCGGAT
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * *
72228910 ATATCACTAGCATGAATGCTCTTCGGGATTTAGCCCGGAT
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * *
72228950 GTAACACCAGCACGAATGCTCTACGGGACTTAACCCGGATAT
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGG--AT
*
72228992 ATATCGCCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
72229032 CATCGTCGAG
Statistics
Matches: 138, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 18 0.13
40 85 0.62
42 35 0.25
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:72229029 original size:82 final size:80
Alignment explanation
Indices: 72228878--72229031 Score: 218
Period size: 82 Copynumber: 1.9 Consensus size: 80
72228868 ATACATCACT
* * * * * * *
72228878 AGCATGAATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGGATTTAG
1 AGCACGAATGCTCTACGGGACTTAACCCGGATATATCACCAGCACGAATGCTCTTCGGGACTTAG
72228943 CCCGGATGTAACACC
66 CCCGGATGTAACACC
*
72228958 AGCACGAATGCTCTACGGGACTTAACCCGGATATATATCGCCAGCACGAATGCTCTTCGGGACTT
1 AGCACGAATGCTCTACGGGACTTAACCCGG--ATATATCACCAGCACGAATGCTCTTCGGGACTT
72229023 AGCCCGGAT
64 AGCCCGGAT
72229032 CATCGTCGAG
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 26 0.41
82 38 0.59
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
AGCACGAATGCTCTACGGGACTTAACCCGGATATATCACCAGCACGAATGCTCTTCGGGACTTAG
CCCGGATGTAACACC
Found at i:72231132 original size:49 final size:47
Alignment explanation
Indices: 72230958--72231274 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
72230948 CCCTTCGGGA
* * * * * *
72230958 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* *
72231005 CCTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
72231052 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
72231099 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
72231148 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTAGGC
*
72231197 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
72231244 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
72231275 GCGTAAAATC
Statistics
Matches: 248, Mismatches: 16, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
47 158 0.64
48 2 0.01
49 88 0.35
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:72231154 original size:96 final size:94
Alignment explanation
Indices: 72230958--72231274 Score: 483
Period size: 96 Copynumber: 3.3 Consensus size: 94
72230948 CCCTTCGGGA
* * * * * *
72230958 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
72231023 CTTCACATTCATCACATTGGCCATTCGGC
66 CTTCACATTCATCACATCGGCCATTAGGC
*
72231052 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTCGGCCTTATCAC--ATATATA
*
72231116 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CACCTTCACATTCATCACATCGGCCATTAGGC
72231148 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
72231213 ACCTTCACATTCATCACATCGGCCATTAGGC
64 ACCTTCACATTCATCACATCGGCCATTAGGC
*
72231244 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
72231275 GCGTAAAATC
Statistics
Matches: 204, Mismatches: 13, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
94 58 0.28
95 1 0.00
96 110 0.54
97 2 0.01
98 33 0.16
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGC
Found at i:72243471 original size:40 final size:40
Alignment explanation
Indices: 72243416--72243625 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
72243406 AACATTGGAA
72243416 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
72243456 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
72243496 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
72243536 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
72243575 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
72243616 CTATATCCGG
1 ATATATCCGG
72243626 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:72250899 original size:41 final size:41
Alignment explanation
Indices: 72250839--72251009 Score: 171
Period size: 41 Copynumber: 4.0 Consensus size: 41
72250829 GACATTAGGG
* *
72250839 TTATGTGTGATTTTGTGTAAGACCATATCTGGGATATGGCA
1 TTATATGTGATTTCGTGTAAGACCATATCTGGGATATGGCA
* * * *
72250880 TTATATGTGATTTCGTGTAAAACCATGTCTGGGACATGGAA
1 TTATATGTGATTTCGTGTAAGACCATATCTGGGATATGGCA
* ** * * *
72250921 TTGATATGGGACATCGTGTAAGACCATAGCTAGGCTATCGGCA
1 TT-ATATGTGATTTCGTGTAAGACCATATCTGGGATAT-GGCA
* *
72250964 TCGATATATGTGATCTCATGTAAGACCATATCTGGGATATGGCA
1 T---TATATGTGATTTCGTGTAAGACCATATCTGGGATATGGCA
72251008 TT
1 TT
72251010 GGCATCTTAC
Statistics
Matches: 102, Mismatches: 23, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
41 38 0.37
42 26 0.25
43 4 0.04
44 5 0.05
45 28 0.27
46 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (41 bp):
TTATATGTGATTTCGTGTAAGACCATATCTGGGATATGGCA
Found at i:72250992 original size:87 final size:83
Alignment explanation
Indices: 72250853--72251010 Score: 199
Period size: 87 Copynumber: 1.9 Consensus size: 83
72250843 GTGTGATTTT
* * * * *
72250853 GTGTAAGACCATATCTGGGATATGGCATTATATGTGATTTCGTGTAAAACCATGTCTGGGACATG
1 GTGTAAGACCATAGCTAGGATATGGCATTATATGTGATCTCATGTAAAACCATATCTGGGACATG
72250918 GAATTGATATGGGACATC
66 GAATTGATATGGGACATC
* *
72250936 GTGTAAGACCATAGCTAGGCTATCGGCATCGATATATGTGATCTCATGTAAGACCATATCTGGGA
1 GTGTAAGACCATAGCTAGGATAT-GGCAT---TATATGTGATCTCATGTAAAACCATATCTGGGA
* *
72251001 TATGGCATTG
62 CATGGAATTG
72251011 GCATCTTACT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
83 20 0.32
84 5 0.08
87 37 0.60
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (83 bp):
GTGTAAGACCATAGCTAGGATATGGCATTATATGTGATCTCATGTAAAACCATATCTGGGACATG
GAATTGATATGGGACATC
Found at i:72254865 original size:37 final size:37
Alignment explanation
Indices: 72254815--72254900 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
72254805 TTATTACGAA
72254815 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
72254852 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
72254889 GTCTCACCCGGA
1 GTCTTACCCGGA
72254901 ATATATTTCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:72255032 original size:48 final size:48
Alignment explanation
Indices: 72254949--72255216 Score: 419
Period size: 48 Copynumber: 5.6 Consensus size: 48
72254939 ACAACATTCT
* * * * *
72254949 CATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
* * * * * *
72254997 CATTCGCCATTCGGCTTTACGACATATACACATCTCATATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
72255045 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
* *
72255093 TATTATCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
72255141 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
72255189 CATTAGCCATTCGGCTTTACCACATATA
1 CATTAGCCATTCGGCTTTACCACATATA
72255217 TACACTTTCA
Statistics
Matches: 203, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 203 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (48 bp):
CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
Found at i:72255260 original size:47 final size:47
Alignment explanation
Indices: 72255194--72255316 Score: 219
Period size: 47 Copynumber: 2.6 Consensus size: 47
72255184 TTTCACATTA
* * *
72255194 GCCATTCGGCTTTACCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
72255241 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
72255288 GCCATTAGGCCTTATCACATATATACACT
1 GCCATTAGGCCTTATCACATATATACACT
72255317 ACGAGCTGTT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
Found at i:72255276 original size:144 final size:143
Alignment explanation
Indices: 72254944--72255263 Score: 347
Period size: 144 Copynumber: 2.2 Consensus size: 143
72254934 AGGTTACAAC
* * * * * * * * * * *
72254944 ATTCTCATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATTTCACATTCGCCATTC
1 ATTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATTC
* * *
72255009 GGCTTTACGACATATACACATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
66 GGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
*
72255074 ATATCACACATGT
131 ACATCACACATGT
* * * * * *
72255087 ATTTCATATTATCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATT
1 A-TTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATT
* *
72255152 CGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATA
65 CGGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATA
* **
72255217 TACACTTTCACAT-T
130 CACA-TCACACATGT
* *
72255231 CA-TCACATCGGCCATTAGGCCTTATCACATATA
1 -ATTCACATCAGCCATTAGGCCTTACCACATATA
72255264 TACACTTTCA
Statistics
Matches: 149, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
143 25 0.17
144 117 0.79
145 7 0.05
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.35
Consensus pattern (143 bp):
ATTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATTC
GGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
ACATCACACATGT
Found at i:72258833 original size:40 final size:40
Alignment explanation
Indices: 72258784--72259136 Score: 521
Period size: 40 Copynumber: 8.8 Consensus size: 40
72258774 CCAGCATGAT
* * *
72258784 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * * *
72258824 TGCTCTTCGGGACTTAGTCCGGTTGCCTTACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
72258864 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCTA-GAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGC-ACGAA
72258904 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
72258944 TGCTCTTCGGAACTTTAATCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGAAC-TTAGTCCGGATACATCACTAGCACGAA
*
72258985 TGCTCTTCGGAACTTAATCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
72259025 TGCTCTTCGGAACTTAATCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
72259065 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
72259105 TGCTCTTCGGGATTTAG-CCTGGATATATCACT
1 TGCTCTTCGGAACTTAGTCC-GGATACATCACT
72259137 CTCAATTCTT
Statistics
Matches: 289, Mismatches: 20, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
39 3 0.01
40 247 0.85
41 39 0.13
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:72259069 original size:161 final size:160
Alignment explanation
Indices: 72258804--72259136 Score: 533
Period size: 161 Copynumber: 2.1 Consensus size: 160
72258794 GACCTAGCCC
* * * * * *
72258804 GGATACATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGTTGCCTTACTAGCACGAATGCTC
1 GGATACATCACTAGCACGAATGCTCTTCGGAACTTAATCCGGATACATCACTAGCACGAATGCTC
*
72258869 TTCGGAACTTAGTCCGGATACATCACTAGCTAGAATGCTCTTCGGAACTTAGTCCGGATACATCA
66 TTCGGAACTTAATCCGGATACATCACTAGCTAGAATGCTCTTCGGAACTTAGTCCGGATACATCA
*
72258934 CTAGCACGAATGCTCTTCGGAACTTTAATCT
131 CTAGCACGAATGCTCTTCGGAA-TTTAACCT
72258965 GGATACATCACTAGCACGAATGCTCTTCGGAACTTAATCCGGATACATCACTAGCACGAATGCTC
1 GGATACATCACTAGCACGAATGCTCTTCGGAACTTAATCCGGATACATCACTAGCACGAATGCTC
*
72259030 TTCGGAACTTAATCCGGGTACATCACTAGC-ACGAATGCTCTTCGGAACTTAGTCCGGATACATC
66 TTCGGAACTTAATCCGGATACATCACTAGCTA-GAATGCTCTTCGGAACTTAGTCCGGATACATC
* *
72259094 ACTAGCACGAATGCTCTTCGGGATTTAGCCT
130 ACTAGCACGAATGCTCTTCGGAATTTAACCT
*
72259125 GGATATATCACT
1 GGATACATCACT
72259137 CTCAATTCTT
Statistics
Matches: 159, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
160 18 0.11
161 141 0.89
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (160 bp):
GGATACATCACTAGCACGAATGCTCTTCGGAACTTAATCCGGATACATCACTAGCACGAATGCTC
TTCGGAACTTAATCCGGATACATCACTAGCTAGAATGCTCTTCGGAACTTAGTCCGGATACATCA
CTAGCACGAATGCTCTTCGGAATTTAACCT
Found at i:72261083 original size:37 final size:37
Alignment explanation
Indices: 72261033--72261118 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
72261023 TTATTACGAA
72261033 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
72261070 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
72261107 GTCTCACCCGGA
1 GTCTTACCCGGA
72261119 ATATATTTCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:72261250 original size:48 final size:48
Alignment explanation
Indices: 72261167--72261434 Score: 428
Period size: 48 Copynumber: 5.6 Consensus size: 48
72261157 ACAACATTCT
* * * * *
72261167 CATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
* * * * * *
72261215 CATTCGCCATTCGGCTTTACGACATATACACATCTCATATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
72261263 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
*
72261311 CATTATCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
72261359 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
72261407 CATTAGCCATTCGGCTTTACCACATATA
1 CATTAGCCATTCGGCTTTACCACATATA
72261435 TACACTTTCA
Statistics
Matches: 205, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 205 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
Found at i:72261478 original size:47 final size:47
Alignment explanation
Indices: 72261412--72261534 Score: 219
Period size: 47 Copynumber: 2.6 Consensus size: 47
72261402 TTTCACATTA
* * *
72261412 GCCATTCGGCTTTACCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
72261459 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
72261506 GCCATTAGGCCTTATCACATATATACACT
1 GCCATTAGGCCTTATCACATATATACACT
72261535 ACGAGCTGTT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
Found at i:72261494 original size:144 final size:143
Alignment explanation
Indices: 72261162--72261481 Score: 356
Period size: 144 Copynumber: 2.2 Consensus size: 143
72261152 AGGTTACAAC
* * * * * * * * * * *
72261162 ATTCTCATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATTTCACATTCGCCATTC
1 ATTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATTC
* * *
72261227 GGCTTTACGACATATACACATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
66 GGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
*
72261292 ATATCACACATGT
131 ACATCACACATGT
* * * * *
72261305 ATTTCACATTATCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATT
1 A-TTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATT
* *
72261370 CGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATA
65 CGGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATA
* **
72261435 TACACTTTCACAT-T
130 CACA-TCACACATGT
* *
72261449 CA-TCACATCGGCCATTAGGCCTTATCACATATA
1 -ATTCACATCAGCCATTAGGCCTTACCACATATA
72261482 TACACTTTCA
Statistics
Matches: 151, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
143 26 0.17
144 118 0.78
145 7 0.05
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (143 bp):
ATTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATTC
GGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
ACATCACACATGT
Found at i:72264383 original size:39 final size:39
Alignment explanation
Indices: 72264269--72264462 Score: 189
Period size: 39 Copynumber: 4.9 Consensus size: 39
72264259 TCGTTCAAAC
* * * * *
72264269 GCCTTCGGGACATAGCCCGGTTATGATAA-CCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCA-AATCTCGCACAATT
* *
72264309 GCCTTCGGGACTTAACCCGGATATCACAA-CTCGCACAATC
1 GCCTTCGGG-CTTAGCCCGGATATCA-AATCTCGCACAATT
* ** *
72264349 GCCTTCGGGCTTAGCCCGAATATCATTTCTCGCACATTT
1 GCCTTCGGGCTTAGCCCGGATATCAAATCTCGCACAATT
* *
72264388 TCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATTT
1 GCCTTCGGGCTTAGCCCGGATATCA-AATCTCGCACAATT
72264427 GCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCA-AATCTCGCACA
72264463 TTCATACACA
Statistics
Matches: 133, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 91 0.68
40 42 0.32
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCAAATCTCGCACAATT
Found at i:72264463 original size:39 final size:39
Alignment explanation
Indices: 72264308--72264464 Score: 217
Period size: 39 Copynumber: 4.0 Consensus size: 39
72264298 CCCGCACAAA
* * *
72264308 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACATT
* * **
72264348 CGCCTTCGGGCTTAGCCCGAATATCA-TTTCTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
*
72264387 TTCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
72264426 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
72264465 CATACACATC
Statistics
Matches: 102, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 92 0.90
40 10 0.10
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
Found at i:72267617 original size:24 final size:24
Alignment explanation
Indices: 72267590--72267796 Score: 315
Period size: 24 Copynumber: 8.6 Consensus size: 24
72267580 CTTATTATGT
* * *
72267590 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
72267614 TCGCACACGTAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
72267638 TCGCACACTTAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
72267662 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
72267686 TCGCACACATAGTGCCATAGTAAG
1 TCGCACACATAGTGCCATAGTAAA
*
72267710 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
72267734 TCGCACACATAGTGCCATAGTAAG
1 TCGCACACATAGTGCCATAGTAAA
*
72267758 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
72267782 TCGCACACATAGTGC
1 TCGCACACATAGTGC
72267797 ATTTGAGATA
Statistics
Matches: 168, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 168 1.00
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:72275409 original size:38 final size:38
Alignment explanation
Indices: 72275300--72275488 Score: 225
Period size: 38 Copynumber: 4.9 Consensus size: 38
72275290 CGTTCAAACG
* * * *
72275300 CTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGC
1 CTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AATGC
* *
72275340 CTTCGGGACTTAACCCGGATATCACAACTCGCACAATGC
1 CTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATGC
* *
72275379 CTTCGGGCTTAGCCCGGATATCATATCTCGCACATTGC
1 CTTCGGGCTTAGCCCGGATATCATAACTCGCACAATGC
* * * *
72275417 CTTCGGGCTTAGCCCGGATATCACAATTCACACATTGC
1 CTTCGGGCTTAGCCCGGATATCATAACTCGCACAATGC
* *
72275455 CTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CTTCGGGCTTAGCCCGGATATCATAACTCGCACA
72275489 TTCATACACA
Statistics
Matches: 134, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
38 94 0.70
39 12 0.09
40 28 0.21
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (38 bp):
CTTCGGGCTTAGCCCGGATATCATAACTCGCACAATGC
Found at i:72275489 original size:38 final size:38
Alignment explanation
Indices: 72275337--72275490 Score: 238
Period size: 38 Copynumber: 4.0 Consensus size: 38
72275327 CCCGCACAAA
* * *
72275337 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAA
1 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAT
*
72275376 TGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACAT
*
72275414 TGCCTTCGGGCTTAGCCCGGATATCACAATTCACACAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
72275452 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
72275490 T
1 T
72275491 CATACACATC
Statistics
Matches: 106, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
37 1 0.01
38 93 0.88
39 12 0.11
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (38 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
Found at i:72277440 original size:27 final size:27
Alignment explanation
Indices: 72277410--72277472 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
72277400 TATTTCAGTT
* * * *
72277410 ATTTTACCACTTGAGGGCAAAATAGTC
1 ATTTTACCACATAAGGGCAAAACAATC
*
72277437 ATTTTACCTCATAAGGGCAAAACAATC
1 ATTTTACCACATAAGGGCAAAACAATC
72277464 ATTTTACCA
1 ATTTTACCA
72277473 ATTTGAGGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.30
Consensus pattern (27 bp):
ATTTTACCACATAAGGGCAAAACAATC
Found at i:72278849 original size:12 final size:12
Alignment explanation
Indices: 72278834--72278872 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
72278824 TTCCTCCCCT
*
72278834 AATCTCTCCTAA
1 AATCTCTCCTCA
*
72278846 AATCCCTCCTCA
1 AATCTCTCCTCA
72278858 AATCTCTCCTCA
1 AATCTCTCCTCA
72278870 AAT
1 AAT
72278873 TCCTCAACTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.31, C:0.38, G:0.00, T:0.31
Consensus pattern (12 bp):
AATCTCTCCTCA
Found at i:72286177 original size:20 final size:20
Alignment explanation
Indices: 72286154--72286192 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
72286144 ATTTTCATGG
72286154 ACTAAATAGCATTTTAAACT
1 ACTAAATAGCATTTTAAACT
72286174 ACTAAATAGCATTTTAAAC
1 ACTAAATAGCATTTTAAAC
72286193 ATACATAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.33
Consensus pattern (20 bp):
ACTAAATAGCATTTTAAACT
Found at i:72301525 original size:48 final size:48
Alignment explanation
Indices: 72301449--72301598 Score: 239
Period size: 48 Copynumber: 3.1 Consensus size: 48
72301439 TAGTCTATTC
*
72301449 TATACATATCTCATATATATATTTCACATT-GACCATTCGGCTTTACCACA
1 TATACATATCTC--ATACATATTTCACATTAG-CCATTCGGCTTTACCACA
*
72301499 TATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
*
72301547 TATACATATCTCATACATATTTCACAATAGCCATTCGGCTTTACCACA
1 TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
72301595 TATA
1 TATA
72301599 TGCATGTTCA
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
48 83 0.87
49 1 0.01
50 11 0.12
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (48 bp):
TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
Found at i:72301647 original size:47 final size:47
Alignment explanation
Indices: 72301576--72301761 Score: 273
Period size: 47 Copynumber: 4.0 Consensus size: 47
72301566 TTTCACAATA
* * * * *
72301576 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCATATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
72301623 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
72301670 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
72301717 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
72301762 AAAATCCTAA
Statistics
Matches: 126, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:72301688 original size:22 final size:22
Alignment explanation
Indices: 72301661--72301732 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
72301651 GCTCACATTC
72301661 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
72301683 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
72301707 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
72301730 ATC
1 ATC
72301733 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:72305355 original size:39 final size:40
Alignment explanation
Indices: 72305242--72305426 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
72305232 TCGAATGGTG
* * *
72305242 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
72305281 ATCCGGACTAAGAT-CAGAAGACATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
72305322 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
72305361 TACGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
72305400 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
72305427 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 33 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:72305448 original size:79 final size:79
Alignment explanation
Indices: 72305297--72305459 Score: 188
Period size: 79 Copynumber: 2.1 Consensus size: 79
72305287 ACTAAGATCA
* * **
72305297 GAAGACATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
* *
72305362 ACGGGTTAAGTCCC
66 ACCGGTTAAATCCC
* *
72305376 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTA
* *
72305439 TAT-CCGGTTAAATTCC
63 AATACCGGTTAAATCCC
72305455 GAAGG
1 GAAGG
72305460 TACGTGATTC
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.66
80 22 0.31
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
ACCGGTTAAATCCC
Found at i:72309135 original size:40 final size:40
Alignment explanation
Indices: 72309103--72309454 Score: 542
Period size: 40 Copynumber: 8.8 Consensus size: 40
72309093 CCAGCATGAT
* * * * *
72309103 TGCTCTTAGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
72309143 TGCTATTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
72309183 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
72309223 TGCTCTTCGGGACGTAGCCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
72309263 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCGCGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
72309303 TACTCTTCAGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
72309343 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
72309383 TGCTCTTCGGGACTTAGCCCGGATATATCACTATCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
72309423 TGCTATTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
72309455 CTCAATTCTC
Statistics
Matches: 288, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 288 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:72311154 original size:29 final size:29
Alignment explanation
Indices: 72311115--72311193 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72311105 CTTAATAATC
*
72311115 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72311145 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72311174 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72311194 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72312328 original size:17 final size:18
Alignment explanation
Indices: 72312291--72312328 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
72312281 CACTTTTTTT
72312291 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
72312310 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
72312327 TT
1 TT
72312329 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:72318930 original size:29 final size:29
Alignment explanation
Indices: 72318891--72318969 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72318881 CTTAATAATC
*
72318891 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72318921 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72318950 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72318970 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72321002 original size:48 final size:48
Alignment explanation
Indices: 72320918--72321067 Score: 212
Period size: 48 Copynumber: 3.1 Consensus size: 48
72320908 TAGTCTATTC
* *
72320918 TATACATATCTCATATATATATTTCACATT-GACCATTCGGCTTTACCACA
1 TATACATATCTC--ATACACATTTCACATTAG-CCATTCGGCTTTACCACA
*
72320968 TATGCATATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACA
1 TATACATATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACA
* * *
72321016 TATACATATCTCATACATATTTCACAATAGCCATTCCGCTTTACCACA
1 TATACATATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACA
72321064 TATA
1 TATA
72321068 TGCATGTTCA
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
48 80 0.87
49 1 0.01
50 11 0.12
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TATACATATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACA
Found at i:72321116 original size:47 final size:47
Alignment explanation
Indices: 72321045--72321230 Score: 264
Period size: 47 Copynumber: 4.0 Consensus size: 47
72321035 TTTCACAATA
* * * * *
72321045 GCCATTCCGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
72321092 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
72321139 TCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
72321186 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
72321231 AAAATCCTAA
Statistics
Matches: 124, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 124 1.00
ACGTcount: A:0.26, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:72330315 original size:12 final size:12
Alignment explanation
Indices: 72330298--72330323 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
72330288 ATAGGTTTGG
72330298 CATGGCCTAGCA
1 CATGGCCTAGCA
72330310 CATGGCCTAGCA
1 CATGGCCTAGCA
72330322 CA
1 CA
72330324 CGGGCTAGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15
Consensus pattern (12 bp):
CATGGCCTAGCA
Found at i:72333065 original size:20 final size:20
Alignment explanation
Indices: 72333042--72333117 Score: 53
Period size: 20 Copynumber: 3.5 Consensus size: 20
72333032 TTATGAATTC
72333042 AAATGTTAAGTGTGGCCTTG
1 AAATGTTAAGTGTGGCCTTG
* ** *
72333062 AAATTTTAAGGTAAGTGAATGAATTC
1 AAATGTTAA-GT--GTG---GCCTTG
72333088 AAATGTTAAGTGTGGCCTTG
1 AAATGTTAAGTGTGGCCTTG
*
72333108 AAATTTTAAG
1 AAATGTTAAG
72333118 GTAAGTGCGC
Statistics
Matches: 41, Mismatches: 9, Indels: 12
0.66 0.15 0.19
Matches are distributed among these distances:
20 20 0.49
21 2 0.05
23 6 0.15
25 2 0.05
26 11 0.27
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.36
Consensus pattern (20 bp):
AAATGTTAAGTGTGGCCTTG
Found at i:72333086 original size:46 final size:46
Alignment explanation
Indices: 72333034--72333124 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
72333024 TTGTTTTGTT
72333034 ATGAATTCAAATGTTAAGTGTGGCCTTGAAATTTTAAGGTAAGTGA
1 ATGAATTCAAATGTTAAGTGTGGCCTTGAAATTTTAAGGTAAGTGA
72333080 ATGAATTCAAATGTTAAGTGTGGCCTTGAAATTTTAAGGTAAGTG
1 ATGAATTCAAATGTTAAGTGTGGCCTTGAAATTTTAAGGTAAGTG
72333125 CGCATTATAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.35
Consensus pattern (46 bp):
ATGAATTCAAATGTTAAGTGTGGCCTTGAAATTTTAAGGTAAGTGA
Found at i:72333112 original size:26 final size:26
Alignment explanation
Indices: 72333037--72333112 Score: 65
Period size: 26 Copynumber: 3.2 Consensus size: 26
72333027 TTTTGTTATG
72333037 AATTCAAATGTTAAGTGTGGCCTTGA
1 AATTCAAATGTTAAGTGTGGCCTTGA
** * **
72333063 AATTTTAA-GGTAA--GT-G-AATG-
1 AATTCAAATGTTAAGTGTGGCCTTGA
72333083 AATTCAAATGTTAAGTGTGGCCTTGA
1 AATTCAAATGTTAAGTGTGGCCTTGA
72333109 AATT
1 AATT
72333113 TTAAGGTAAG
Statistics
Matches: 34, Mismatches: 10, Indels: 12
0.61 0.18 0.21
Matches are distributed among these distances:
20 6 0.18
21 6 0.18
22 1 0.03
23 4 0.12
24 1 0.03
25 6 0.18
26 10 0.29
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (26 bp):
AATTCAAATGTTAAGTGTGGCCTTGA
Found at i:72333122 original size:25 final size:25
Alignment explanation
Indices: 72333048--72333124 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
72333038 ATTCAAATGT
72333048 TAAGTGTGGCCTTGAAATTTTAAGG
1 TAAGTGTGGCCTTGAAATTTTAAGG
** ** *
72333073 TAA--GT-G-AATG-AATTCAAATGT
1 TAAGTGTGGCCTTGAAATTTTAA-GG
72333094 TAAGTGTGGCCTTGAAATTTTAAGG
1 TAAGTGTGGCCTTGAAATTTTAAGG
72333119 TAAGTG
1 TAAGTG
72333125 CGCATTATAG
Statistics
Matches: 36, Mismatches: 10, Indels: 12
0.62 0.17 0.21
Matches are distributed among these distances:
20 6 0.17
21 6 0.17
22 1 0.03
23 4 0.11
24 1 0.03
25 12 0.33
26 6 0.17
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (25 bp):
TAAGTGTGGCCTTGAAATTTTAAGG
Found at i:72337786 original size:11 final size:11
Alignment explanation
Indices: 72337770--72337794 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
72337760 TTTTAGGGTT
72337770 TACATACATCC
1 TACATACATCC
72337781 TACATACATCC
1 TACATACATCC
72337792 TAC
1 TAC
72337795 CGAGCGTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.28
Consensus pattern (11 bp):
TACATACATCC
Found at i:72339619 original size:3 final size:3
Alignment explanation
Indices: 72339611--72339635 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
72339601 TTTCCCTATC
72339611 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
72339636 TTTAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:72339765 original size:19 final size:18
Alignment explanation
Indices: 72339728--72339771 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
72339718 ATACATGCAG
72339728 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
72339745 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
72339764 TACTAATT
1 TAATAATT
72339772 AAAATTTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:72343081 original size:46 final size:46
Alignment explanation
Indices: 72343028--72343203 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
72343018 TATTTGGGCA
72343028 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72343074 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
72343119 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
72343167 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72343204 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72343183 original size:93 final size:93
Alignment explanation
Indices: 72343024--72343195 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72343014 GGGATATTTG
* *
72343024 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
72343089 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
72343117 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
72343182 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
72343196 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:72346171 original size:15 final size:15
Alignment explanation
Indices: 72346151--72346219 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
72346141 GTATCTTGGG
72346151 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
72346166 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
72346181 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
72346196 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
72346211 TTTCTTTAT
1 TTTCTTTAT
72346220 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:72346220 original size:30 final size:30
Alignment explanation
Indices: 72346142--72346229 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
72346132 CATAGTATCG
* * * *
72346142 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
72346172 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
72346202 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
72346230 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:72348777 original size:46 final size:46
Alignment explanation
Indices: 72348614--72348786 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
72348604 ATTTGGGCAT
*
72348614 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
72348658 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
72348703 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
72348751 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72348787 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:72351733 original size:17 final size:18
Alignment explanation
Indices: 72351691--72351739 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
72351681 AGTTGAAAAG
72351691 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
72351710 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
72351727 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
72351740 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:72352623 original size:40 final size:40
Alignment explanation
Indices: 72352557--72352707 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
72352547 AAATTGAATG
* * *
72352557 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
72352596 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
72352636 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
72352676 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
72352708 ACTGATTATA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:72359732 original size:17 final size:18
Alignment explanation
Indices: 72359690--72359738 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
72359680 AGTTGAAAAG
72359690 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
72359709 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
72359726 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
72359739 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:72360622 original size:40 final size:40
Alignment explanation
Indices: 72360556--72360706 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
72360546 AAATTGAATG
* * *
72360556 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
72360595 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
72360635 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
72360675 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
72360707 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:72360720 original size:40 final size:40
Alignment explanation
Indices: 72360592--72360722 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
72360582 TATGCTGGAA
* * * *
72360592 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
72360632 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
72360672 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
72360712 ATTATATCCGG
1 ATTATATCCGG
72360723 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:72367897 original size:20 final size:20
Alignment explanation
Indices: 72367872--72367920 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
72367862 ATTTTCAAAA
*
72367872 ATTGCTACACTGATGACCAG
1 ATTGCTACACCGATGACCAG
*
72367892 ATTGCTACACCGATTACCAG
1 ATTGCTACACCGATGACCAG
72367912 ATTGCTACA
1 ATTGCTACA
72367921 GAAAGACGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (20 bp):
ATTGCTACACCGATGACCAG
Found at i:72369001 original size:46 final size:46
Alignment explanation
Indices: 72368951--72369216 Score: 256
Period size: 46 Copynumber: 5.7 Consensus size: 46
72368941 TGGTTGAGCA
* * *
72368951 TCCGAACTAGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * *
72368997 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGG
* *
72369042 CATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * * *
72369090 TCCGAACTCGTTGAGTTGAGTCCGAATTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGG
* * * *
72369135 CATCGGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* *
72369183 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72369217 GGGGCGGGTT
Statistics
Matches: 178, Mismatches: 28, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
43 12 0.07
45 8 0.04
46 84 0.47
47 55 0.31
48 8 0.04
50 11 0.06
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
Found at i:72369062 original size:47 final size:47
Alignment explanation
Indices: 72368997--72369165 Score: 222
Period size: 47 Copynumber: 3.6 Consensus size: 47
72368987 GATGCAAATG
72368997 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* * *
72369044 TCCGAACTCGTTGAGTTGAGTCCGAGTTTAC-TTATGGATGCAA--ATG--
1 TCCGAACTCGTTGAGTTGAGTCCGAG-TT-CGTGA--GATGTAACTAGGCA
*
72369090 TCCGAACTCGTTGAGTTGAGTCCGAATTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
*
72369137 TCGGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
72369166 ATTTATGGAT
Statistics
Matches: 104, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 6 0.06
46 25 0.24
47 53 0.51
48 6 0.06
49 1 0.01
50 6 0.06
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:72369107 original size:93 final size:93
Alignment explanation
Indices: 72368948--72369211 Score: 438
Period size: 93 Copynumber: 2.8 Consensus size: 93
72368938 GGATGGTTGA
* *
72368948 GCATCCGAACTAGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
72369013 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
72369041 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
*
72369106 TGAGTCCGAATTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * * *
72369134 GCATCGGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
72369199 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
72369212 ACTTAGGGGC
Statistics
Matches: 159, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 159 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72369478 original size:19 final size:20
Alignment explanation
Indices: 72369441--72369478 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72369431 ATAAGGTGGT
72369441 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
72369461 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
72369479 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:72374747 original size:30 final size:28
Alignment explanation
Indices: 72374711--72374809 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
72374701 GACAAGATTG
* *
72374711 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
72374741 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
72374769 GCACTAAGTGTGCGAGCTGAA-TATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
72374796 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72374810 GACTGACTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 20 0.32
28 24 0.39
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:72374780 original size:28 final size:28
Alignment explanation
Indices: 72374711--72374809 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
72374701 GACAAGATTG
* * * *
72374711 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72374741 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
72374769 GCACTAAGTGTGCGAG-CTGAATATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72374796 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72374810 GACTGACTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72382531 original size:30 final size:28
Alignment explanation
Indices: 72382495--72382593 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
72382485 GACAAGATTG
* *
72382495 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
72382525 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
72382553 GCACTAAGTGTGCGAGCTGAA-TATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
72382580 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72382594 GACTCACTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 20 0.32
28 24 0.39
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:72382564 original size:28 final size:28
Alignment explanation
Indices: 72382495--72382593 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
72382485 GACAAGATTG
* * * *
72382495 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72382525 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
72382553 GCACTAAGTGTGCGAG-CTGAATATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72382580 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72382594 GACTCACTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72390251 original size:30 final size:28
Alignment explanation
Indices: 72390215--72390313 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
72390205 GACAAGATTG
* *
72390215 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
72390245 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
72390273 GCACTAAGTGTGCGAGCTGAA-TATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
72390300 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72390314 GACTCACTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 20 0.32
28 24 0.39
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:72390284 original size:28 final size:28
Alignment explanation
Indices: 72390215--72390313 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
72390205 GACAAGATTG
* * * *
72390215 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72390245 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
72390273 GCACTAAGTGTGCGAG-CTGAATATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72390300 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72390314 GACTCACTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72394530 original size:68 final size:70
Alignment explanation
Indices: 72394458--72394655 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
72394448 ACACCCTGTA
* * * *
72394458 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
72394520 ATAAAT
65 ATAAAT
*
72394526 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
72394591 ATAAAT
65 ATAAAT
*
72394597 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
72394656 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:72394569 original size:41 final size:41
Alignment explanation
Indices: 72394524--72394641 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72394514 TGAAAGATAA
72394524 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72394565 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72394595 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72394636 ATGTAG
1 ATGTAG
72394642 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72394581 original size:71 final size:71
Alignment explanation
Indices: 72394492--72394655 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72394482 GAGATGTATC
72394492 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72394557 AGGACA
66 AGGACA
72394563 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72394628 AGGACA
66 AGGACA
72394634 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72394656 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72402095 original size:68 final size:70
Alignment explanation
Indices: 72402023--72402220 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
72402013 ACACCCTGTA
* * * *
72402023 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
72402085 ATAAAT
65 ATAAAT
*
72402091 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
72402156 ATAAAT
65 ATAAAT
*
72402162 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
72402221 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:72402134 original size:41 final size:41
Alignment explanation
Indices: 72402089--72402206 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72402079 TGAAAGATAA
72402089 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72402130 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72402160 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72402201 ATGTAG
1 ATGTAG
72402207 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72402146 original size:71 final size:71
Alignment explanation
Indices: 72402057--72402220 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72402047 GAGATGTATC
72402057 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72402122 AGGACA
66 AGGACA
72402128 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72402193 AGGACA
66 AGGACA
72402199 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72402221 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72403565 original size:13 final size:13
Alignment explanation
Indices: 72403547--72403575 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
72403537 CGGGCGAGTA
72403547 ACCTGGCCGTGTG
1 ACCTGGCCGTGTG
72403560 ACCTGGCCGTGTG
1 ACCTGGCCGTGTG
72403573 ACC
1 ACC
72403576 CTTATTTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.34, G:0.34, T:0.21
Consensus pattern (13 bp):
ACCTGGCCGTGTG
Found at i:72409336 original size:43 final size:43
Alignment explanation
Indices: 72409167--72409419 Score: 246
Period size: 43 Copynumber: 5.9 Consensus size: 43
72409157 TACGGTACTA
* *
72409167 ATCGGGTCTTTGAGCCTAGCAGGCTATAATGCCAGTGAAATGAT
1 ATCGGG-CTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* ** *
72409211 ATCGAGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGAGAT-ACT
1 ATCG-GGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-T
* *
72409255 ATTTGGGTCTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGAT
1 A-TCGGG-CTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * *
72409300 ATCGGGCATCGACCCTAGCAGGCTATAATGTCGGTGAAATGAT
1 ATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * * *
72409343 ATCGGGCTTCGAGCCTAGTAGGCGA-AATGCCGATG-GATGA-
1 ATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* ** *
72409383 ATTCGGGTTTAAAACCTAGCAGGCTA-AATGCCGGTGA
1 A-TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
72409420 TTTGATAAAA
Statistics
Matches: 173, Mismatches: 29, Indels: 16
0.79 0.13 0.07
Matches are distributed among these distances:
40 1 0.01
41 31 0.18
42 8 0.05
43 55 0.32
44 42 0.24
45 35 0.20
46 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (43 bp):
ATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
Found at i:72411551 original size:84 final size:84
Alignment explanation
Indices: 72411458--72411640 Score: 303
Period size: 84 Copynumber: 2.2 Consensus size: 84
72411448 CATGTACTGG
** *
72411458 TAATTCATTTCATATTGATAAATTAATCAACCCTGAATCATCTTAATTGTGTTCAATTTAGCAAT
1 TAATTCATTTCATATTGATAAATTAATCAACCCTGAATCATCTTAATCATGTTCAATTTAGCAAC
72411523 CGAAACAAATGTTTCTTGA
66 CGAAACAAATGTTTCTTGA
* * * *
72411542 TAATTCATTTCATATTGATAACTTTATCAACCCTGAATCATCTTAATCATTTTCCATTTAGCAAC
1 TAATTCATTTCATATTGATAAATTAATCAACCCTGAATCATCTTAATCATGTTCAATTTAGCAAC
72411607 CGAAACAAATGTTTCTTGA
66 CGAAACAAATGTTTCTTGA
72411626 TAATTCATTTCATAT
1 TAATTCATTTCATAT
72411641 GTCTAAATGA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 92 1.00
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.40
Consensus pattern (84 bp):
TAATTCATTTCATATTGATAAATTAATCAACCCTGAATCATCTTAATCATGTTCAATTTAGCAAC
CGAAACAAATGTTTCTTGA
Found at i:72420289 original size:43 final size:43
Alignment explanation
Indices: 72420225--72420713 Score: 609
Period size: 43 Copynumber: 11.3 Consensus size: 43
72420215 CATAGGATTT
* *
72420225 TCGATATGTGATTACGTGTAAGACCACGTCTGGGTCGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * * *
72420268 TCAATATGTGATTATGTGTAAGACCACGTCTGGTACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
*
72420311 TCGATATGTGATTACGTGTAAGAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGATTACGTGT---AAGACCACGTCTGGGACATTGGCA
*
72420357 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * * ** *
72420400 TCGATATGCGATTATGTGTAAGACCATGTCTGATACATTTGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
*
72420443 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * * *
72420486 TCGATATGCGATTATGTGTAAGACCACGTCTGAGACATTTGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * * *
72420529 CCGATATGTGATTACGTGTAAAACCACATCTGGGACATTGGAA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * ** *
72420572 TCGATATGTGATTATGTGTAAGACCACATCTGGGATGTTTGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * * *
72420615 TCAATATGTGATTACGTGTAAGACCACATTTGGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * ***
72420658 TCGATATGTGATTACGAGTAAGACCACGTTTAATACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
*
72420701 ACGATATGTGATT
1 TCGATATGTGATT
72420714 CCGATATATG
Statistics
Matches: 391, Mismatches: 52, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
43 349 0.89
46 42 0.11
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
Found at i:72420733 original size:56 final size:56
Alignment explanation
Indices: 72420659--72420906 Score: 327
Period size: 56 Copynumber: 4.4 Consensus size: 56
72420649 ACGTTGGCAT
* * *
72420659 CGATATGTGAT-TACGAGTAAGACCACGTTTAATACATTGGCAACGATATGTGATTC
1 CGATATGTG-TGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* * * *
72420715 CGATATATGTGTGCGAGTAAGACCATGTTTAATATGTTGGCATCGATATGTGATTT
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* * *
72420771 CGATATGTGTGTGCGAGTAAGAACACGTTTAATACGTTTGCATCGGTATGTGATTC
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* * * * *
72420827 TGATATGTGTGTGAGAGTAAGACCACGTTTAATACGTTGTCATCGATAGGTGATTT
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* *
72420883 CGATATGTGTTTACGAGTAAGACC
1 CGATATGTGTGTGCGAGTAAGACC
72420907 CTGTCTGCGA
Statistics
Matches: 165, Mismatches: 26, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
55 1 0.01
56 164 0.99
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (56 bp):
CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
Found at i:72428280 original size:28 final size:28
Alignment explanation
Indices: 72428215--72428341 Score: 123
Period size: 28 Copynumber: 4.5 Consensus size: 28
72428205 TCATGAATTG
* ** *
72428215 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-TGATTATATA
72428244 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
72428272 GCACTAAGTGTGTGAGTTTGACTAT-TAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
* * *
72428300 GCACTAAGTGTGCGGGCTT-ATTATACA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72428327 TGCTCTAAGTGTGCG
1 -GCACTAAGTGTGCG
72428342 GCCTTATCGA
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
27 6 0.07
28 60 0.72
29 17 0.20
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72437614 original size:40 final size:40
Alignment explanation
Indices: 72437487--72437616 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
72437477 ATGCTGGAAA
* *
72437487 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
72437527 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
72437567 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
72437607 TTATATCCGG
1 TTATATCCGG
72437617 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:72439462 original size:29 final size:29
Alignment explanation
Indices: 72439428--72439559 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
72439418 TACTCGATTT
** * *
72439428 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
72439457 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
72439486 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
72439515 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72439544 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
72439560 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:72460056 original size:20 final size:20
Alignment explanation
Indices: 72459982--72460089 Score: 71
Period size: 20 Copynumber: 5.5 Consensus size: 20
72459972 ATGTTATTTG
*
72459982 ATATTTTCATA-ATTTTTTT
1 ATATTTTCTTATATTTTTTT
* *
72460001 -TA-TTTCTTCCTAATTTTTTG
1 ATATTTTCTT-AT-ATTTTTTT
** *
72460021 ATACATTCTCAT-TTTTTTT
1 ATATTTTCTTATATTTTTTT
*
72460040 ATATTTTCTTATATTTTTTA
1 ATATTTTCTTATATTTTTTT
** * *
72460060 ATATTCCCTCATAATTTTTT
1 ATATTTTCTTATATTTTTTT
72460080 ATATTTTCTT
1 ATATTTTCTT
72460090 GTATGGTTTG
Statistics
Matches: 64, Mismatches: 19, Indels: 11
0.68 0.20 0.12
Matches are distributed among these distances:
17 5 0.08
18 2 0.03
19 15 0.23
20 35 0.55
21 3 0.05
22 4 0.06
ACGTcount: A:0.22, C:0.12, G:0.01, T:0.65
Consensus pattern (20 bp):
ATATTTTCTTATATTTTTTT
Found at i:72460111 original size:40 final size:39
Alignment explanation
Indices: 72459978--72460115 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 39
72459968 TCTCATGTTA
* *
72459978 TTTGATAT-TT-TCATAATTTTTTTTA-TTTCTTCCTAATTT
1 TTTGATATATTCTCATAATTTTTTATATTTTCTT-AT-A-TT
* *
72460017 TTTGATACATTCTCAT-TTTTTTTATATTTTCTTATATT
1 TTTGATATATTCTCATAATTTTTTATATTTTCTTATATT
* * *
72460055 TTTTA-ATATTCCCTCATAATTTTTTATATTTTCTTGTATGG
1 TTTGATATATT--CTCATAATTTTTTATATTTTCTTATAT-T
72460096 TTTGATATATTCTCATAATT
1 TTTGATATATTCTCATAATT
72460116 CTTTGCACTT
Statistics
Matches: 81, Mismatches: 10, Indels: 15
0.76 0.09 0.14
Matches are distributed among these distances:
37 4 0.05
38 6 0.07
39 13 0.16
40 39 0.48
41 14 0.17
42 5 0.06
ACGTcount: A:0.22, C:0.11, G:0.04, T:0.62
Consensus pattern (39 bp):
TTTGATATATTCTCATAATTTTTTATATTTTCTTATATT
Found at i:72460234 original size:20 final size:21
Alignment explanation
Indices: 72460189--72460237 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
72460179 ACTTCCTCCC
*
72460189 ATTTTTTTGATACTTTATTAT
1 ATTTTTTTGATACTTTATCAT
*
72460210 ATTTTTTT-ATACTTTCTCAT
1 ATTTTTTTGATACTTTATCAT
*
72460230 GTTTTTTT
1 ATTTTTTT
72460238 CAGTTCCTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.18, C:0.08, G:0.04, T:0.69
Consensus pattern (21 bp):
ATTTTTTTGATACTTTATCAT
Found at i:72465219 original size:46 final size:49
Alignment explanation
Indices: 72465099--72465229 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 49
72465089 GAATATGGGA
* * * *
72465099 GAGCTAGTGTAAGACCATGTCTGGGATATGGCGTCGGCCTCGATGACAAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGATGACAAT
* * * *
72465149 -AGTCAGTGTAAGTCCATGTTTGGGACAT-GCATCGACTTGA-GAC-AT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATGACAAT
*
72465194 GAGCCAGTGTAAGACCGTGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
72465230 GACCATACCT
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
45 2 0.03
46 27 0.40
47 11 0.16
48 4 0.06
49 23 0.34
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATGACAAT
Found at i:72486607 original size:28 final size:28
Alignment explanation
Indices: 72486513--72486838 Score: 321
Period size: 28 Copynumber: 11.6 Consensus size: 28
72486503 CTTCTAATGG
* * * **
72486513 TTGCCACAAGGGCTTTCATGTTCAGAAAT
1 TTGCCACAAAGGCTTTCCT-TTTAGAGGT
* **
72486542 TT-CCACAAAGGCTTTTCTTCCAGAGGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
* * * * *
72486569 TCGCTATAAAGGCTTTCCCTTTAGAAGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
* * * *
72486597 TTCCCAAAAAGGCTTTCTTTTTGGAGGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
*
72486625 TTGCCACAAAGGCTTTCCTTTTAGAGTT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
* * * *
72486653 TTTCCATAAAGGATTTCCTTTTAGAGAT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
* * * *
72486681 TTACCACAATGGCTTTCCTTTCAAAGGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
* *
72486709 TTTCCACAAAGGCTTTCTTTTTAGAGGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
72486737 TTGCCACAAAGGCTTTCCTTTTAGAGGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
* * *
72486765 TTTCCATAAAGGTTTTCCTTTTAGAGGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
* *
72486793 TAGTCACAAAAGGCTTTCCTTTTAGAGGT
1 TTGCCAC-AAAGGCTTTCCTTTTAGAGGT
*
72486822 TTGCCTCAAAGGCTTTC
1 TTGCCACAAAGGCTTTC
72486839 AATTTTTTGG
Statistics
Matches: 239, Mismatches: 56, Indels: 5
0.80 0.19 0.02
Matches are distributed among these distances:
27 7 0.03
28 206 0.86
29 26 0.11
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (28 bp):
TTGCCACAAAGGCTTTCCTTTTAGAGGT
Found at i:72487558 original size:30 final size:31
Alignment explanation
Indices: 72487534--72487592 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
72487524 GTAAATACTC
* **
72487534 AAAATTTGAGGGGTTAA-AGTGTAAATATGA
1 AAAATTTGAAGGGCCAATAGTGTAAATATGA
72487564 AAAATTTGAAGGGCCAATAGTGTAAATAT
1 AAAATTTGAAGGGCCAATAGTGTAAATAT
72487593 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.44, C:0.03, G:0.24, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGGCCAATAGTGTAAATATGA
Found at i:72489599 original size:27 final size:26
Alignment explanation
Indices: 72489543--72489599 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
72489533 CAACCTTAAC
* *
72489543 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTTTACA
* *
72489569 CCTAGGGGTAAATCTGTAAATTTTTCA
1 CCTAGGGGTAAATCAGT-AATTTTACA
72489596 CCTA
1 CCTA
72489600 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTACA
Found at i:72489874 original size:13 final size:13
Alignment explanation
Indices: 72489846--72489888 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
72489836 ACTTATTGCC
*
72489846 TATTTTTTTATAT
1 TATTATTTTATAT
72489859 TATATATTTT-TAT
1 TAT-TATTTTATAT
72489872 TATTATTTTAT-T
1 TATTATTTTATAT
72489884 TATTA
1 TATTA
72489889 ACCCGTATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 12 0.44
13 10 0.37
14 5 0.19
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TATTATTTTATAT
Found at i:72489885 original size:15 final size:14
Alignment explanation
Indices: 72489846--72489888 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
72489836 ACTTATTGCC
72489846 TATTTTTTTA-TAT
1 TATTTTTTTATTAT
72489859 TATATATTTTTATTAT
1 TAT-T-TTTTTATTAT
72489875 TATTTTATTTATTA
1 TATTTT-TTTATTA
72489889 ACCCGTATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.12
14 3 0.12
15 14 0.54
16 6 0.23
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (14 bp):
TATTTTTTTATTAT
Found at i:72494339 original size:40 final size:40
Alignment explanation
Indices: 72494222--72494358 Score: 159
Period size: 40 Copynumber: 3.4 Consensus size: 40
72494212 CTCGAGAATA
* ** *
72494222 TAAAGTGGATAGGATTCATTCCTGATTCACTATAATACCT
1 TAAAGTGGATAGGATTTATTCCTGATTCACTATGGTAACT
* * * *
72494262 CAAAATGGATAGGATTTGTTCCTGATTCACTATGGTAATT
1 TAAAGTGGATAGGATTTATTCCTGATTCACTATGGTAACT
* *
72494302 TAAAGTGAATAGGATTTATTCCTGATTCACTACGGTAACT
1 TAAAGTGGATAGGATTTATTCCTGATTCACTATGGTAACT
*
72494342 T-AAGTCTGATAGGATTT
1 TAAAGT-GGATAGGATTT
72494359 GACCTGAAAA
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 4 0.05
40 76 0.95
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.36
Consensus pattern (40 bp):
TAAAGTGGATAGGATTTATTCCTGATTCACTATGGTAACT
Found at i:72494931 original size:20 final size:20
Alignment explanation
Indices: 72494906--72494965 Score: 120
Period size: 20 Copynumber: 3.0 Consensus size: 20
72494896 CTACTAGATG
72494906 TTGACTTAATCTGGTTAAGT
1 TTGACTTAATCTGGTTAAGT
72494926 TTGACTTAATCTGGTTAAGT
1 TTGACTTAATCTGGTTAAGT
72494946 TTGACTTAATCTGGTTAAGT
1 TTGACTTAATCTGGTTAAGT
72494966 CTGTCCAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.25, C:0.10, G:0.20, T:0.45
Consensus pattern (20 bp):
TTGACTTAATCTGGTTAAGT
Found at i:72499047 original size:25 final size:25
Alignment explanation
Indices: 72499018--72499065 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72499008 TTATAATATG
* * *
72499018 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
72499043 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
72499066 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:72499134 original size:20 final size:20
Alignment explanation
Indices: 72499109--72499167 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
72499099 TAAATATGGT
72499109 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
72499129 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
72499149 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
72499168 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:72499149 original size:11 final size:11
Alignment explanation
Indices: 72499113--72499167 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
72499103 TATGGTATGT
72499113 ATGATATGCAC
1 ATGATATGCAC
* *
72499124 ATGAAATG--T
1 ATGATATGCAC
72499133 ATGATATGCAC
1 ATGATATGCAC
*
72499144 ATGATATG--T
1 ATGATATGCAC
72499153 ATGATATGCAC
1 ATGATATGCAC
72499164 ATGA
1 ATGA
72499168 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:72499245 original size:24 final size:24
Alignment explanation
Indices: 72499218--72499360 Score: 184
Period size: 24 Copynumber: 6.0 Consensus size: 24
72499208 GAGGAAGTGA
*
72499218 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72499242 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72499266 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
72499289 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
72499313 GAAAGGGATT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATC
*
72499337 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72499361 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
23 24 0.22
24 74 0.69
25 10 0.09
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Done.