Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 242 of 770
Found at i:72499310 original size:47 final size:47
Alignment explanation
Indices: 72499218--72499360 Score: 182
Period size: 47 Copynumber: 3.0 Consensus size: 47
72499208 GAGGAAGTGA
*
72499218 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
72499266 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
72499313 GAAAGGGATT-TGGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTAT-GCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
72499361 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
46 1 0.01
47 41 0.48
48 33 0.38
49 11 0.13
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:72499334 original size:71 final size:72
Alignment explanation
Indices: 72499218--72499361 Score: 195
Period size: 71 Copynumber: 2.0 Consensus size: 72
72499208 GAGGAAGTGA
* * *
72499218 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
72499281 CCAGTTAT
65 CCAGTTAT
** *
72499289 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGATT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTAT-GCCCCAGTTATCAAAAGAGGCTAGGCCT
72499353 CCAGTTAT
65 CCAGTTAT
72499361 A
1 A
72499362 TGATAAAGCA
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
70 1 0.02
71 51 0.80
72 12 0.19
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:72499588 original size:31 final size:31
Alignment explanation
Indices: 72499553--72499616 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
72499543 CGTTTACAGT
72499553 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
72499584 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
72499615 AA
1 AA
72499617 TATGAAATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:72499615 original size:7 final size:7
Alignment explanation
Indices: 72499603--72499630 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
72499593 GGCCCAGTAT
72499603 TATGAAA
1 TATGAAA
72499610 TATGAAA
1 TATGAAA
72499617 TATGAAA
1 TATGAAA
72499624 TATGAAA
1 TATGAAA
72499631 AGGGCTACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (7 bp):
TATGAAA
Found at i:72501682 original size:53 final size:52
Alignment explanation
Indices: 72501564--72501742 Score: 237
Period size: 51 Copynumber: 3.5 Consensus size: 52
72501554 ACTAGTGACT
*
72501564 CAAGTGTGGTACTATGTGAAGGCCAC-TT-TG-AGAACAGATAAC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAA-AGATAGCTTTGGTCA
72501613 CAAGTGTGGTACTATGTGAAGGCCTACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCC-ACTTTGTGAAGAAAGATAGCTTTGGTCA
* *
72501666 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTC-A
*
72501717 CAAGGGTGGTACTATGTGCAA-GCCAC
1 CAAGTGTGGTACTATGTG-AAGGCCAC
72501743 CGGGTATCCG
Statistics
Matches: 119, Mismatches: 4, Indels: 12
0.88 0.03 0.09
Matches are distributed among these distances:
49 24 0.20
50 4 0.03
51 35 0.29
52 21 0.18
53 35 0.29
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
Found at i:72507455 original size:23 final size:23
Alignment explanation
Indices: 72507429--72507476 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
72507419 TTGGGTAACA
*
72507429 TAGGAAATTTATGTTTTTAGTTT
1 TAGGAAATTTATGCTTTTAGTTT
*
72507452 TAGGAAATTTATGCTTTTATTTT
1 TAGGAAATTTATGCTTTTAGTTT
72507475 TA
1 TA
72507477 TTTTTCTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.27, C:0.02, G:0.15, T:0.56
Consensus pattern (23 bp):
TAGGAAATTTATGCTTTTAGTTT
Found at i:72508691 original size:40 final size:40
Alignment explanation
Indices: 72508636--72508863 Score: 298
Period size: 40 Copynumber: 5.7 Consensus size: 40
72508626 TAATTGAGGA
*
72508636 TTATATCCGGGTTAAGTCCCGAAGGCTTTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
72508676 TTATATCCGGGTTAAGTCTCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
72508716 TTTTATCCGGGTTAAGTCCCGAAGGCATTCGTGTTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
72508756 TTATATCTGGGCTAAGTCCTGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * * * * *
72508796 TTATATTCAGGG-CAAGTTCCGAAGGCACTCGTACTAG-TG
1 TTATA-TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
72508835 TTATATCCGAGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGTTAAGTCCCGAAGGCATT
72508864 TGTGTTTGGA
Statistics
Matches: 164, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
38 4 0.02
39 21 0.13
40 134 0.82
41 5 0.03
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.33
Consensus pattern (40 bp):
TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:72515607 original size:27 final size:27
Alignment explanation
Indices: 72515531--72515620 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
72515521 TTTAGTTTAC
* *
72515531 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
72515558 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
72515585 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
72515612 TAAAATTAC
1 TAAAATTAC
72515621 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:72515630 original size:54 final size:53
Alignment explanation
Indices: 72515531--72515636 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 53
72515521 TTTAGTTTAC
* *
72515531 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCC-CGATTTG
* * *
72515585 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCGATTT
72515637 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
53 14 0.31
54 31 0.69
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (53 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCGATTTG
Found at i:72515665 original size:27 final size:26
Alignment explanation
Indices: 72515626--72515943 Score: 368
Period size: 27 Copynumber: 11.8 Consensus size: 26
72515616 ATTACCAAAG
*
72515626 TACCC-CGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTA-CGTTT
* *
72515652 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTA-CGTTT
72515679 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTA-CGTTT
*
72515706 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTAC-GTTT
*
72515733 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTA-CGTTT
*
72515760 TACCCTCGATTTACATAATTACTGTTT
1 TACCCTCGATTTACAAAATTAC-GTTT
*
72515787 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTA-CGTTT
* *
72515814 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTAC-GTTT
72515841 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTA-CGTTT
* * * *
72515868 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTAC-GTTT
* * * * *
72515895 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTAC-GTTT
72515922 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
72515944 AGAAATACCC
Statistics
Matches: 255, Mismatches: 29, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
26 9 0.04
27 243 0.95
28 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.41
Consensus pattern (26 bp):
TACCCTCGATTTACAAAATTACGTTT
Found at i:72515743 original size:81 final size:81
Alignment explanation
Indices: 72515626--72515943 Score: 433
Period size: 81 Copynumber: 3.9 Consensus size: 81
72515616 ATTACCAAAG
* *
72515626 TACCC-CGATTTACAGAATTA-TCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGAT
72515689 TTACAAAATTACCGTTT
65 TTACAAAATTACCGTTT
* *
72515706 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
* *
72515771 TACATAATTACTGTTT
66 TACAAAATTACCGTTT
* * * * *
72515787 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
*
72515852 TACAAAATTATCGTTT
66 TACAAAATTACCGTTT
* * * * * * **
72515868 TACCGTCGATTTATAGAATTACTATTTTTCTCTTGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
72515933 TACAAAATTAC
66 TACAAAATTAC
72515944 AGAAATACCC
Statistics
Matches: 213, Mismatches: 23, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
80 5 0.02
81 207 0.97
82 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
TACAAAATTACCGTTT
Found at i:72515952 original size:27 final size:27
Alignment explanation
Indices: 72515922--72516007 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
72515912 ATTACTATTT
*
72515922 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
72515949 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
72515976 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
72516003 TACCC
1 TACCC
72516008 ATGGTTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 50 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:72515970 original size:54 final size:54
Alignment explanation
Indices: 72515626--72515943 Score: 449
Period size: 54 Copynumber: 5.9 Consensus size: 54
72515616 ATTACCAAAG
* * * * *
72515626 TACCC-CGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
72515679 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
72515733 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACATAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
72515787 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
72515841 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * ** *
72515895 TTCTCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
72515944 AGAAATACCC
Statistics
Matches: 239, Mismatches: 25, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
53 5 0.02
54 234 0.98
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:72515994 original size:54 final size:53
Alignment explanation
Indices: 72515936--72516062 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
72515926 CTCGATTTAC
* **
72515936 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
72515990 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
72516044 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
72516063 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
53 4 0.06
54 55 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:72516014 original size:27 final size:27
Alignment explanation
Indices: 72515936--72516034 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
72515926 CTCGATTTAC
*
72515936 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
*
72515963 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
72515990 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
72516017 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
72516035 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 62 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:72516047 original size:27 final size:27
Alignment explanation
Indices: 72515961--72516080 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
72515951 CCCTCAATTT
**
72515961 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
72515988 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
72516015 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
72516042 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
72516069 GTAAAATTACCA
1 GTAAAATTACCA
72516081 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:72519834 original size:40 final size:40
Alignment explanation
Indices: 72519779--72520006 Score: 334
Period size: 40 Copynumber: 5.7 Consensus size: 40
72519769 TAATTGAGGA
* * *
72519779 TTATATCCGGGTTAAGTCCCAAAGGCTTTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
72519819 TTATATTCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
72519859 TTATATCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
72519899 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
72519939 TTATATCCGGGCCAAGTTCCGAAGGCACTT-GTACTGG-TG
1 TTATATCCGGGCTAAGTCCCGAAGGCA-TTCGTGCTGGTTG
72519978 TTATATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
72520007 TGTGTTTGGA
Statistics
Matches: 173, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
38 2 0.01
39 27 0.16
40 142 0.82
41 2 0.01
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32
Consensus pattern (40 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:72527362 original size:20 final size:19
Alignment explanation
Indices: 72527320--72527363 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
72527310 GTAGCTGAGG
*
72527320 TGGTTGTGTACATATGGCA
1 TGGTTGTGTACAAATGGCA
72527339 TGGTATGTGTACAAATTGGC-
1 TGGT-TGTGTACAAA-TGGCA
72527359 TGGTT
1 TGGTT
72527364 TTTAGTTGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 5 0.23
20 13 0.59
21 4 0.18
ACGTcount: A:0.20, C:0.09, G:0.32, T:0.39
Consensus pattern (19 bp):
TGGTTGTGTACAAATGGCA
Found at i:72532543 original size:27 final size:28
Alignment explanation
Indices: 72532512--72532581 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
72532502 ATAGTGATTC
*
72532512 CGCACAATTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
72532539 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
72532567 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72532582 GTACCAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72537566 original size:25 final size:25
Alignment explanation
Indices: 72537532--72537580 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
72537522 GTATCCTCTA
72537532 CCAAGGATTGATGACTTGTTCGACC
1 CCAAGGATTGATGACTTGTTCGACC
*
72537557 CCAAGGATTGTTGACTTGTTCGAC
1 CCAAGGATTGATGACTTGTTCGAC
72537581 TAGTTGAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (25 bp):
CCAAGGATTGATGACTTGTTCGACC
Found at i:72538778 original size:40 final size:40
Alignment explanation
Indices: 72538723--72538805 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
72538713 GCAATGAAAG
72538723 CTCAGTGTGAGGCGAACAGTGAATCAAATTTTCAGATAGA
1 CTCAGTGTGAGGCGAACAGTGAATCAAATTTTCAGATAGA
72538763 CTCAGTGTGAGGCGAACAGTGAATCAAATTTTCAGATAGA
1 CTCAGTGTGAGGCGAACAGTGAATCAAATTTTCAGATAGA
72538803 CTC
1 CTC
72538806 TGATGGTTGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (40 bp):
CTCAGTGTGAGGCGAACAGTGAATCAAATTTTCAGATAGA
Found at i:72543365 original size:40 final size:40
Alignment explanation
Indices: 72543282--72543393 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
72543272 TCGAATGATG
* *
72543282 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
72543322 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
*
72543362 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
72543394 CTATTATAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
39 1 0.02
40 53 0.85
41 8 0.13
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:72556975 original size:39 final size:40
Alignment explanation
Indices: 72556922--72557031 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
72556912 CTGGAAATTA
* *
72556922 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-T-GGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
**
72556960 TATTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTC
1 TA-TCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTAGGC
*
72557001 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
72557032 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
38 5 0.08
39 26 0.42
40 26 0.42
41 5 0.08
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
Found at i:72557045 original size:40 final size:40
Alignment explanation
Indices: 72556881--72557047 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
72556871 AAATTGAATG
* * * **
72556881 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * **
72556921 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
*
72556961 AT-TCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
72557000 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
72557040 ATATCCGG
1 ATATCCGG
72557048 TTATATTCCG
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
38 3 0.03
39 30 0.29
40 69 0.66
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:72561324 original size:40 final size:40
Alignment explanation
Indices: 72561276--72561480 Score: 256
Period size: 40 Copynumber: 5.2 Consensus size: 40
72561266 GGACTAAGAT
*
72561276 CCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
* * *
72561316 CCAAAGGCATTTATGCTAGTGACTATACCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
72561356 CCGAAGGCATTTGTGCTAGCGAATATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
72561396 CCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGAT-
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAG-TC
* * *
72561436 CCGAAGGCATTTGTGCGAGTTG-CGATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
72561475 CCGAAG
1 CCGAAG
72561481 ATACTTGGGT
Statistics
Matches: 143, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.10
40 125 0.87
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:72561464 original size:80 final size:79
Alignment explanation
Indices: 72561264--72561480 Score: 312
Period size: 80 Copynumber: 2.7 Consensus size: 79
72561254 CGGATGATAA
* *
72561264 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCAAAGGCATTTA
1 CCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAGTCCCGAAGGCATTTA
72561329 TGCTAGTGACTATAC
65 TGCTAGTGACTATAC
* * *
72561344 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAG-CGAATATATCCAGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAGTCCCGAAGGCATT
*
72561407 TATGCTAGTGACTATAT
63 TATGCTAGTGACTATAC
* *
72561424 CCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTGCGATATCCGGCTAAATCCCGAAG
1 CCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAGTCCCGAAG
72561481 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
79 16 0.13
80 103 0.85
81 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAGTCCCGAAGGCATTTAT
GCTAGTGACTATAC
Found at i:72566313 original size:44 final size:44
Alignment explanation
Indices: 72566265--72566902 Score: 909
Period size: 44 Copynumber: 14.5 Consensus size: 44
72566255 GCTCTTTGTA
*
72566265 AATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* *
72566309 AATACAGAGATGCCAAATTTGCTATCTTCGATTTGCTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* *
72566353 AATACAGAGATGCCAAATCTACGATCTTCGATCTGCTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * * * * * * *
72566397 AATACAGATATGCCAAATTTGCTATTTTTGACCCGTTCTCTGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
*
72566441 AATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* *
72566485 AATACAGAGATGCCAAATCTGCGACCTTCGATCTGCTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * * *
72566529 AATACAGAGATGCCGATTCTACTATCTTCGATCT-CTTCTCTGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGC-TCTCCGCC
72566573 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * * * * *
72566617 AATACAGAGATGCCAAATTTACGATCTTTGATATGCTCTCCGCA
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
72566661 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * *
72566705 AATACAGAGATGCCAAATCTGCGACCTTTGATCTGCTCTCCGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * ** *
72566749 AATACAGAGATGCCGATTCTGCTATCTTCGATCTATTCTCTGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* *
72566793 AATACAGAGATGTCAAATCTGCTATCTTCGATCTGCTCTCTGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
* * *
72566837 AATACCGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
72566881 AATACAGAGATGCCAAATCTGC
1 AATACAGAGATGCCAAATCTGC
72566903 AGGATTTACC
Statistics
Matches: 520, Mismatches: 72, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
43 1 0.00
44 518 1.00
45 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.29
Consensus pattern (44 bp):
AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC
Found at i:72589735 original size:40 final size:39
Alignment explanation
Indices: 72589690--72589897 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
72589680 CGGAATACAA
*
72589690 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72589730 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72589770 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
72589810 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
72589850 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
72589890 CCGGATAT
1 CCGGATAT
72589898 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72589830 original size:80 final size:81
Alignment explanation
Indices: 72589690--72589895 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
72589680 CGGAATACAA
* * *
72589690 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
72589754 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
72589770 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
72589833 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
72589850 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
72589896 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:72597744 original size:40 final size:39
Alignment explanation
Indices: 72597699--72597906 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
72597689 CGGAATACAA
*
72597699 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72597739 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72597779 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
72597819 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
72597859 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
72597899 CCGGATAT
1 CCGGATAT
72597907 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72597839 original size:80 final size:81
Alignment explanation
Indices: 72597699--72597904 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
72597689 CGGAATACAA
* * *
72597699 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
72597763 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
72597779 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
72597842 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
72597859 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
72597905 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:72604769 original size:49 final size:49
Alignment explanation
Indices: 72604566--72604785 Score: 193
Period size: 49 Copynumber: 4.6 Consensus size: 49
72604556 GATTTGTGCA
** * *
72604566 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCAC-ATTATGATAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGAAGACGAGAG
* * *** *
72604612 CCAGTGTAAGACCATGTCTGGGACGTGGCATCGGCGTTG-AGACGAGGG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGAAGACGAGAG
* * * *
72604660 CTAGCGTAAGA-CATGTCTGGGACAT-GCATC-AGCACGTATATACGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACG-A-AGACGAGAG
* * * * *
72604708 CTAGTCTAAGACCATGTCTGGGACATGGCATCGACCTCGAAGATGATAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGAAGACGAGAG
*
72604757 CCAGTGTCAGACCATGTCTGGGACATGGC
1 CCAGTGTAAGACCATGTCTGGGACATGGC
72604786 GTCGGCAACT
Statistics
Matches: 135, Mismatches: 30, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
45 1 0.01
46 16 0.12
47 26 0.19
48 36 0.27
49 46 0.34
50 6 0.04
51 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (49 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGAAGACGAGAG
Found at i:72609122 original size:46 final size:46
Alignment explanation
Indices: 72609069--72609159 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
72609059 TATATATACA
* *
72609069 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
* * *
72609115 CATCTCATACGCATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATAT
72609160 ATATACTTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:72609204 original size:47 final size:46
Alignment explanation
Indices: 72609133--72609700 Score: 796
Period size: 47 Copynumber: 12.1 Consensus size: 46
72609123 ACGCATTTCG
* * * * *
72609133 CATTAGCCATTCGGCTTTACCACATATAT-ATACTTACACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATCAT-GTT-CACATTCATCA
*
72609180 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATGTTCACATTCATCA
* *
72609227 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATGTTCACATTCATCA
* *
72609274 CATTGGCCATTCAGCCTTATCACATATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATGTTCACATTCATCA
* * *
72609321 CATTGGTCATTCGGCCTTATCACACATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATGTTCACATTCATCA
*
72609368 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATGTTCACATTCATCA
*
72609415 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCGTCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATGTTCACATTCATCA
* * * *
72609462 CATTGGTCATTTGGCCTTATCACATATGTGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATGTTCACATTCATCA
* *
72609509 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATGTTCACATTCATCA
*
72609556 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCGTCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATGTTCACATTCATCA
*
72609603 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATGTTCACATTCATCA
*
72609650 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATGTTCACATTCATCA
72609697 CATT
1 CATT
72609701 AAATCCTAAA
Statistics
Matches: 485, Mismatches: 34, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
47 481 0.99
48 2 0.00
49 2 0.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.35
Consensus pattern (46 bp):
CATTGGCCATTCGGCCTTATCACATATATCATGTTCACATTCATCA
Found at i:72609276 original size:94 final size:94
Alignment explanation
Indices: 72609133--72609700 Score: 906
Period size: 94 Copynumber: 6.0 Consensus size: 94
72609123 ACGCATTTCG
* * * * * *
72609133 CATTAGCCATTCGGCTTTACCACATATAT--ATACTTACACGTTCATCACATTGGCCATTCGGCC
1 CATTGGCCATTCGGCCTTATCACATATATGCAT-GTT-CACATTTATCACATTGGCCATTCGGCC
72609196 TTATCACATATGTGCATGTTCACATTCATCA
64 TTATCACATATGTGCATGTTCACATTCATCA
* *
72609227 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTTATCACATTGGCCATTCAGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTTATCACATTGGCCATTCGGCCTT
72609292 ATCACATATGTGCATGTTCACATTCATCA
66 ATCACATATGTGCATGTTCACATTCATCA
* *
72609321 CATTGGTCATTCGGCCTTATCACACATATGCATGTTCACATTTATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTTATCACATTGGCCATTCGGCCTT
* *
72609386 ATCACACATATGCATGTTCACATTCATCA
66 ATCACATATGTGCATGTTCACATTCATCA
** * *
72609415 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCGTCACATTGGTCATTTGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTTATCACATTGGCCATTCGGCCTT
*
72609480 ATCACATATGTGCATGTTCACATTTATCA
66 ATCACATATGTGCATGTTCACATTCATCA
*
72609509 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTTATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTTATCACATTGGCCATTCGGCCTT
* *
72609574 ATCACATATATGCATGTTCACATTCGTCA
66 ATCACATATGTGCATGTTCACATTCATCA
* *
72609603 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTTATCACATTGGCCATTCGGCCTT
72609668 ATCACATATGTGCATGTTCACATTCATCA
66 ATCACATATGTGCATGTTCACATTCATCA
72609697 CATT
1 CATT
72609701 AAATCCTAAA
Statistics
Matches: 440, Mismatches: 32, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
94 436 0.99
95 2 0.00
96 2 0.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.35
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTTATCACATTGGCCATTCGGCCTT
ATCACATATGTGCATGTTCACATTCATCA
Found at i:72609321 original size:141 final size:141
Alignment explanation
Indices: 72609133--72609700 Score: 906
Period size: 141 Copynumber: 4.0 Consensus size: 141
72609123 ACGCATTTCG
* * * * *
72609133 CATTAGCCATTCGGCTTTACCACATATAT--ATACTTACACGTTCATCACATTGGCCATTCGGCC
1 CATTGGCCATTCGGCCTTATCACATATATGCAT-GTT-CACATTCATCACATTGGCCATTCGGCC
72609196 TTATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
64 TTATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
*
72609261 TTCACATTTATCA
129 TTCACATTCATCA
* * *
72609274 CATTGGCCATTCAGCCTTATCACATATGTGCATGTTCACATTCATCACATTGGTCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
72609339 ATCACACATATGCATGTTCACATTTATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
66 ATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
72609404 CACATTCATCA
131 CACATTCATCA
* * *
72609415 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCGTCACATTGGTCATTTGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
72609480 ATCACATATGTGCATGTTCACATTTATCACATTGGCCATTCGGCCTTATCACATATGTGCATGTT
66 ATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
*
72609545 CACATTTATCA
131 CACATTCATCA
*
72609556 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCGTCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
72609621 ATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATGTGCATGTT
66 ATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
72609686 CACATTCATCA
131 CACATTCATCA
72609697 CATT
1 CATT
72609701 AAATCCTAAA
Statistics
Matches: 400, Mismatches: 25, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
141 396 0.99
142 2 0.00
143 2 0.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.35
Consensus pattern (141 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
CACATTCATCA
Found at i:72614354 original size:28 final size:29
Alignment explanation
Indices: 72614295--72614381 Score: 131
Period size: 29 Copynumber: 3.0 Consensus size: 29
72614285 CTAATGGGTG
*
72614295 TATACGTGGTTAAACCACCTATATCTCAA
1 TATAAGTGGTTAAACCACCTATATCTCAA
*
72614324 TATAAGTGGTTAAA-CACCTATATCTCGA
1 TATAAGTGGTTAAACCACCTATATCTCAA
**
72614352 TATATTTGGTTAAACCACCTATATCTCAA
1 TATAAGTGGTTAAACCACCTATATCTCAA
72614381 T
1 T
72614382 TCACATATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
28 25 0.48
29 27 0.52
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (29 bp):
TATAAGTGGTTAAACCACCTATATCTCAA
Found at i:72614615 original size:20 final size:20
Alignment explanation
Indices: 72614522--72614635 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
72614512 ATTCATTTCT
* *
72614522 ATTCGTATAAACTGTAATTTC
1 ATTCATATAAACAGTAA-TTC
* * * *
72614543 CTTCATATTACCAGTAGTTC
1 ATTCATATAAACAGTAATTC
* * *
72614563 ATCCATATAAACAATAGTTC
1 ATTCATATAAACAGTAATTC
72614583 A-TCAGTA-ATAACAGTAATTC
1 ATTCA-TATA-AACAGTAATTC
* *
72614603 ATTCATATCAACAGTAACTC
1 ATTCATATAAACAGTAATTC
72614623 ATTCATATAAACA
1 ATTCATATAAACA
72614636 CATATATTTT
Statistics
Matches: 72, Mismatches: 17, Indels: 9
0.73 0.17 0.09
Matches are distributed among these distances:
19 3 0.04
20 55 0.76
21 14 0.19
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.34
Consensus pattern (20 bp):
ATTCATATAAACAGTAATTC
Found at i:72614803 original size:26 final size:24
Alignment explanation
Indices: 72614774--72614874 Score: 69
Period size: 24 Copynumber: 4.1 Consensus size: 24
72614764 CTTTCAAGCC
*
72614774 ATAATCGATAAGCTCCTCCTGAGCTG
1 ATAA-CGATAAGCTCCT-ATGAGCTG
** *
72614800 ATAAAAAATAAGCTCATATGAGCTG
1 AT-AACGATAAGCTCCTATGAGCTG
* * *
72614825 A-AACGATAAGCTCCAATAAGCTA
1 ATAACGATAAGCTCCTATGAGCTG
* * * *
72614848 AAAACAATAAGCTCTTACGAGCTG
1 ATAACGATAAGCTCCTATGAGCTG
72614872 ATA
1 ATA
72614875 TATCGGTAAG
Statistics
Matches: 56, Mismatches: 17, Indels: 6
0.71 0.22 0.08
Matches are distributed among these distances:
23 17 0.30
24 18 0.32
25 8 0.14
26 11 0.20
27 2 0.04
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.23
Consensus pattern (24 bp):
ATAACGATAAGCTCCTATGAGCTG
Found at i:72615062 original size:2 final size:2
Alignment explanation
Indices: 72615055--72615086 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
72615045 TTCTCAAATC
72615055 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72615087 TCAATTCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72618692 original size:27 final size:27
Alignment explanation
Indices: 72618651--72618838 Score: 189
Period size: 27 Copynumber: 7.0 Consensus size: 27
72618641 AAACATACAT
* **
72618651 CACATAGGGGCAAAATAGTCATCCTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
72618678 CACATAAGGGAAAAATAGTGATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
** *
72618705 CTTATAAGGGCAAAATCGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
72618732 CACATAAGGGGAAAATCA-CCATTTTAA
1 CACATAAGGGCAAAAT-AGTCATTTTAC
* * * *
72618759 CACATAAGAGCAAAACAATTATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
72618786 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
72618813 CCCATAAAGGTAAAATAGTCATTTTA
1 CACATAAGGGCAAAATAGTCATTTTA
72618839 TTAATTTGGG
Statistics
Matches: 130, Mismatches: 29, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
26 1 0.01
27 129 0.99
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:72620874 original size:46 final size:46
Alignment explanation
Indices: 72620824--72620996 Score: 158
Period size: 46 Copynumber: 3.7 Consensus size: 46
72620814 TGGTTGAGCA
72620824 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72620870 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAAATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* * ** *
72620915 CATCCTAACTCGTTCAGTTGAGTCTAAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72620963 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72620997 GGGGCGAGTT
Statistics
Matches: 98, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
42 6 0.06
43 4 0.04
45 2 0.02
46 53 0.54
47 22 0.22
48 2 0.02
50 3 0.03
51 6 0.06
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72620980 original size:93 final size:93
Alignment explanation
Indices: 72620821--72620990 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
72620811 GGATGGTTGA
* * * *
72620821 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTCAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72620886 TGAGTCCGAGTTTGTGAAATGTAACTAG
66 TGAGTCCGAGTTTGTGAAATGTAACTAG
* * *
72620914 GCATCCTAACTCGTTCAGTTGAGTCTAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTCAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
72620979 TGAGTTCGAGTT
66 TGAGTCCGAGTT
72620991 CACTTAGGGG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTCAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAAATGTAACTAG
Found at i:72628411 original size:46 final size:46
Alignment explanation
Indices: 72628361--72628533 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
72628351 TGGTTGAGCA
72628361 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
72628407 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
72628452 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72628500 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72628534 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 29 0.28
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72628517 original size:93 final size:93
Alignment explanation
Indices: 72628358--72628528 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
72628348 GGATGGTTGA
***
72628358 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
72628423 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
72628451 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
*
72628516 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
72628529 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:72636973 original size:468 final size:467
Alignment explanation
Indices: 72635615--72637014 Score: 2480
Period size: 467 Copynumber: 3.0 Consensus size: 467
72635605 CCACATGCCT
* * *
72635615 ATGGGACAAGCCGTGTGTCACACACAGCCAAGATACACGCCCATGTGTCTACTCGTGTGGACAAA
1 ATGGGACAAGTCGTGTGTCACACACAGCCAAGACACACGCCCGTGTGTCTACTCGTGTGGACAAA
* *
72635680 ATAAAGCCATTTCCTAGCTTCATTTGTAACCCAAAACTTACCATTTTCCTGCACCAAAACTTAC-
66 ATAAAGCCATTTCCTAGCTTCATTTGTCACCCAAAACTTACCATTTTCCTGCACCAAAACTCACA
* *
72635744 AGTATATATTTTCCAATCCAACATCATATTCACATAAAATTTTCCATCAATCATGTGGTATTAAC
131 AGTATATATTTACCAATCCAACATCATATTCACATAAAATTTTCCATCAATCATGTGGTATTATC
*
72635809 TCATGCATCAAAGGATATAAACTTACTCTTAACATAAACATATACGCTAACATAACTCCAACAAA
196 TCATGCATCAAAGGATATAAACTTACTCTTAACATAAACATATATGCTAACATAACTCCAACAAA
72635874 CTAACACATAATAAGCACTTATGTGATTACCAAAATATTACTTCAAAAATAGCCAAACTTAGACC
261 CTAACACATAATAAGCACTTATGTGATTACCAAAATATTACTTCAAAAATAGCCAAACTTAGACC
72635939 ATCACTAGCCACCCCAATGGCTAGATTACAAAATAACAATTACAAGCCATCATTGGCTAAATAAG
326 ATCACTAGCCACCCCAATGGCTAGATTACAAAATAACAATTACAAGCCATCATTGGCTAAATAAG
72636004 CTTATACATGCCATTATACCGAAATGAGATTTCTATTTATACCAAAATGAGATAGTGGATAGTGT
391 CTTATACATGCCATTATACCGAAATGAGATTTCTATTTATACCAAAATGAGATAGTGGATAGTGT
72636069 GATGACTGCTCA
456 GATGACTGCTCA
* * * *
72636081 ATGGGACAAGTCGTGTGTCACACACAGCCAAGACACATGTCCGTGTGTCTACCCATGTGGACAAA
1 ATGGGACAAGTCGTGTGTCACACACAGCCAAGACACACGCCCGTGTGTCTACTCGTGTGGACAAA
*
72636146 ATAAAGCCATTTCCTAGCTTCATTTGTCACCCAAAACTTACCATTTTCCTACACCAAAACTCACA
66 ATAAAGCCATTTCCTAGCTTCATTTGTCACCCAAAACTTACCATTTTCCTGCACCAAAACTCACA
* * * * *
72636211 AGTAAATATTTACCAATCCAACATCATATTCACGTAAAATTTTTCATCAACCATGTGGTATCATC
131 AGTATATATTTACCAATCCAACATCATATTCACATAAAATTTTCCATCAATCATGTGGTATTATC
* *
72636276 TCATGCATCAAAGGATATAAACTTACTCTTAACATATAA-ATATATGCTAACATAACACCAATAA
196 TCATGCATCAAAGGATATAAACTTACTCTTAACATA-AACATATATGCTAACATAACTCCAACAA
*
72636340 ACTAACACATAATAAGCACTTATGTGATTACCAAAATATAACTTCAAAAATAGCCAAACTTAGAC
260 ACTAACACATAATAAGCACTTATGTGATTACCAAAATATTACTTCAAAAATAGCCAAACTTAGAC
72636405 CATCACTAGCCACCCCAATGGCTAGATTACAAAATAACAATTACAAGCCATCATTGGCTAAATAA
325 CATCACTAGCCACCCCAATGGCTAGATTACAAAATAACAATTACAAGCCATCATTGGCTAAATAA
* * *
72636470 GCTTATACATGCCATTATACCGAAATGAAATTTCTATTTATACCAAGATGAGACAGTGGATAGTG
390 GCTTATACATGCCATTATACCGAAATGAGATTTCTATTTATACCAAAATGAGATAGTGGATAGTG
*
72636535 TGATAACTGCTCA
455 TGATGACTGCTCA
72636548 ATGGGACAAGTCGTGTGTCACACACAGCCAAGACACACGCCCGTGTGTCTACTCGTGTGGACAAA
1 ATGGGACAAGTCGTGTGTCACACACAGCCAAGACACACGCCCGTGTGTCTACTCGTGTGGACAAA
*
72636613 ATAAAGTCATTTCCTAGCTTCATTTGTCACCCAAAACTTACCATTTTCCTGCACCAAAACTCACA
66 ATAAAGCCATTTCCTAGCTTCATTTGTCACCCAAAACTTACCATTTTCCTGCACCAAAACTCACA
*
72636678 AGTATATATTTACCAATCCAACATCATATTTACATAAAACTTTTCCATCAATCATGTGGTATTAT
131 AGTATATATTTACCAATCCAACATCATATTCACATAAAA-TTTTCCATCAATCATGTGGTATTAT
*
72636743 CTCATGCATCAAAGGAAATAAACTTACTCTTAACATAAACATATATGCTAACATAACTCCAACAA
195 CTCATGCATCAAAGGATATAAACTTACTCTTAACATAAACATATATGCTAACATAACTCCAACAA
72636808 ACTAACACATAATAAGCACTTATGTGATTACCAAAATATTACTTCAAAAATAGCCAAACTTAGAC
260 ACTAACACATAATAAGCACTTATGTGATTACCAAAATATTACTTCAAAAATAGCCAAACTTAGAC
* *
72636873 CATCACTAGCCACCCCAATGGCTAGATTACAAAACAATAATTACAAGCCATCATTGGCTAAATAA
325 CATCACTAGCCACCCCAATGGCTAGATTACAAAATAACAATTACAAGCCATCATTGGCTAAATAA
* *
72636938 GCTTATACATGCCATTATACCAAAATGAGATTTCTATTAATACCAAAATGAGATAGTGGATAGTG
390 GCTTATACATGCCATTATACCGAAATGAGATTTCTATTTATACCAAAATGAGATAGTGGATAGTG
72637003 TGATGACTGCTC
455 TGATGACTGCTC
72637015 CAACTGACTT
Statistics
Matches: 881, Mismatches: 49, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
466 119 0.14
467 481 0.55
468 281 0.32
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (467 bp):
ATGGGACAAGTCGTGTGTCACACACAGCCAAGACACACGCCCGTGTGTCTACTCGTGTGGACAAA
ATAAAGCCATTTCCTAGCTTCATTTGTCACCCAAAACTTACCATTTTCCTGCACCAAAACTCACA
AGTATATATTTACCAATCCAACATCATATTCACATAAAATTTTCCATCAATCATGTGGTATTATC
TCATGCATCAAAGGATATAAACTTACTCTTAACATAAACATATATGCTAACATAACTCCAACAAA
CTAACACATAATAAGCACTTATGTGATTACCAAAATATTACTTCAAAAATAGCCAAACTTAGACC
ATCACTAGCCACCCCAATGGCTAGATTACAAAATAACAATTACAAGCCATCATTGGCTAAATAAG
CTTATACATGCCATTATACCGAAATGAGATTTCTATTTATACCAAAATGAGATAGTGGATAGTGT
GATGACTGCTCA
Found at i:72645467 original size:29 final size:27
Alignment explanation
Indices: 72645435--72645527 Score: 71
Period size: 28 Copynumber: 3.3 Consensus size: 27
72645425 GGTTCACCTT
72645435 AAAGGCTTACCTTTCCAGAGGTTTTCCAC
1 AAAGGCTTACCTTTCCA-A-GTTTTCCAC
* * **
72645464 AAAGG-TTGTCCTTTAACAAGTTCGCCAC
1 AAAGGCTT-ACCTTT-CCAAGTTTTCCAC
* *
72645492 AAAGGCTTAACTTTCCAAAGTTTTGCAAC
1 AAAGGCTTACCTTTCC-AAGTTTT-CCAC
72645521 AAAGGCT
1 AAAGGCT
72645528 ATCATTTAAC
Statistics
Matches: 49, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
27 1 0.02
28 23 0.47
29 23 0.47
30 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (27 bp):
AAAGGCTTACCTTTCCAAGTTTTCCAC
Found at i:72645499 original size:57 final size:57
Alignment explanation
Indices: 72645435--72645542 Score: 146
Period size: 57 Copynumber: 1.9 Consensus size: 57
72645425 GGTTCACCTT
* * * * * *
72645435 AAAGGCTTACCTTTCCAGAGGTTTT-CCACAAAGGTTGTCCTTTAACAAGTTCGCCAC
1 AAAGGCTTAACTTTCCA-AAGTTTTGCAACAAAGGCTATCATTTAACAAGTTCGCCAC
72645492 AAAGGCTTAACTTTCCAAAGTTTTGCAACAAAGGCTATCATTTAACAAGTT
1 AAAGGCTTAACTTTCCAAAGTTTTGCAACAAAGGCTATCATTTAACAAGTT
72645543 TGCATAAAGA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
56 6 0.14
57 38 0.86
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (57 bp):
AAAGGCTTAACTTTCCAAAGTTTTGCAACAAAGGCTATCATTTAACAAGTTCGCCAC
Found at i:72645755 original size:53 final size:52
Alignment explanation
Indices: 72645676--72645832 Score: 206
Period size: 53 Copynumber: 3.0 Consensus size: 52
72645666 ACTTTTCCCT
*
72645676 ATATGATGCCATAATCCACCAATTATGATCTTACACGATATGGTCTTCTTTCC
1 ATAT-ATGCCATAATCCACCAGTTATGATCTTACACGATATGGTCTTCTTTCC
* * *
72645729 ATATCATGCCATAAGCCACTAGTTATGGTCTTACACGATATGGTCTTCTTTCC
1 ATAT-ATGCCATAATCCACCAGTTATGATCTTACACGATATGGTCTTCTTTCC
** * * *
72645782 ATATAGTATCATAATCTACCAGTTATGATCTTACATGATATGGCCTTCTTT
1 ATATA-TGCCATAATCCACCAGTTATGATCTTACACGATATGGTCTTCTTT
72645833 GGTGCCATGG
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
52 1 0.01
53 89 0.99
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (52 bp):
ATATATGCCATAATCCACCAGTTATGATCTTACACGATATGGTCTTCTTTCC
Found at i:72650984 original size:28 final size:28
Alignment explanation
Indices: 72650919--72651019 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
72650909 ATAGTGAATC
*
72650919 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
72650948 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72650976 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
72651006 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72651020 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72658922 original size:28 final size:28
Alignment explanation
Indices: 72658857--72658957 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
72658847 ATAGTGAATC
*
72658857 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
72658886 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72658914 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
72658944 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72658958 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72666931 original size:44 final size:44
Alignment explanation
Indices: 72666866--72666949 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
72666856 TTGATATCTC
* *
72666866 AAAGTCCATGGTTGTACCATGGCAATTAAGGAAGAATTGATTGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATTGA
* *
72666910 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGA
72666950 CGGTTAAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 3 0.09
44 32 0.91
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATTGA
Found at i:72667004 original size:47 final size:49
Alignment explanation
Indices: 72666953--72667179 Score: 132
Period size: 47 Copynumber: 4.8 Consensus size: 49
72666943 GAATTGACGG
*
72666953 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCAGCA-T-TGA
1 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCAGCACTAAGA
** ** **
72667000 TTAAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTGGCACTAAGA
1 TTAAGGA-TACCATGTAAGACCATGTCAAGACATGGCATCAGCACTAAGA
* *** * ** *
72667049 -CAAGGATACCATGTAAGACCATGTTTGGAACATGGTATTTG--GTAAGA
1 TTAAGGATACCATGTAAGACCATGTCAAG-ACATGGCATCAGCACTAAGA
* *** ** *
72667096 -CAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTG--GTAAGA
1 TTAAGGATACCATGTAAGACCATGTCAAG-ACATGGCATCAGCACTAAGA
* * *
72667143 -TAAGGATATCATGTAAGACCATGCCAAGGCATGGCAT
1 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCAT
72667180 TGATAAGTTT
Statistics
Matches: 149, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
46 8 0.05
47 109 0.73
48 22 0.15
49 10 0.07
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (49 bp):
TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCAGCACTAAGA
Found at i:72668268 original size:27 final size:27
Alignment explanation
Indices: 72668235--72668580 Score: 374
Period size: 27 Copynumber: 12.8 Consensus size: 27
72668225 ATACCCCCAA
* *
72668235 TTGTAAAATTACCAAAGTACCCCCGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * * *
72668262 TTATAAAATTACCCAAATA-TCCTCGAT
1 TTGTAAAATTACCAAAATACCCCT-GGT
*
72668289 TTGTAAAATTACCAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
72668316 TTGCAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
72668343 TTGTAAAATTACTAGAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
72668370 TTATAAAATCACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGGT
*
72668397 TTGTAAAATTACCAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
**
72668424 TTACAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
72668451 TTGTAAAATTATCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGGT
*
72668478 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * **
72668505 TTGTGAAATTACTAAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-GGT
** **
72668532 TTGTAAAATTATTAAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-GGT
*
72668559 TTGTAAAATTACCAAAGTACCC
1 TTGTAAAATTACCAAAATACCC
72668581 TTGATTTATC
Statistics
Matches: 268, Mismatches: 47, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
26 6 0.02
27 258 0.96
28 4 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGGT
Found at i:72668621 original size:81 final size:81
Alignment explanation
Indices: 72668235--72668634 Score: 270
Period size: 81 Copynumber: 4.9 Consensus size: 81
72668225 ATACCCCCAA
* * * * ** * * **
72668235 TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACTAAAATACCCTCGACTTACAAAATTA
* * *
72668300 CCAAAATACCCTTG-GT
66 TCAAAATACCC-CGAGC
* * * * * ** * *
72668316 TTGCAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACTAGAATACCCTTGGTTTATAAAATC
1 TTGTAAAATTACCAAAATACCCCTGA-TTTATGAAATTACTAAAATACCCTCGACTTACAAAATT
* * *
72668380 ACCAAAATACCCCTAGT
65 ATCAAAATACCCCGAGC
* * ** * ** **
72668397 TTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-CTGGTTTGTAAAATT
1 TTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACTAAAATACCCTC-GACTTACAAAATT
* *
72668461 ATCAAAATACCCCTAGT
65 ATCAAAATACCCCGAGC
* **
72668478 TTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATACCCTCGACTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACTAAAATACCCTCGACTTACAAAATTA
*
72668543 TTAAAATACCCTCGA-C
66 TCAAAATACCC-CGAGC
* * * **** *
72668559 TTGTAAAATTACCAAAGTACCCTTGATTTATCG-AATTATTGTTTTACCCTCGATTTACAAAATT
1 TTGTAAAATTACCAAAATACCCCTGATTTAT-GAAATTACTAAAATACCCTCGACTTACAAAATT
* *
72668623 ACCGAAATACCC
65 ATCAAAATACCC
72668635 TTGTAGGGTA
Statistics
Matches: 261, Mismatches: 51, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
81 257 0.98
82 4 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (81 bp):
TTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACTAAAATACCCTCGACTTACAAAATTA
TCAAAATACCCCGAGC
Found at i:72668666 original size:26 final size:27
Alignment explanation
Indices: 72668626--72668728 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 27
72668616 CAAAATTACC
72668626 GAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCCTTGTAGGGTAGAAATACT
*
72668653 GAAATA-CCTTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACT
* * *
72668679 GAAATACCCCTATAGGGTAGAATTAC-
1 GAAATACCCTTGTAGGGTAGAAATACT
* *
72668705 CAAGATACCCTTGTGGGGTA-AAAT
1 GAA-ATACCCTTGTAGGGTAGAAAT
72668729 TACCATTTTA
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 30 0.45
27 36 0.55
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAAATACT
Found at i:72668683 original size:53 final size:54
Alignment explanation
Indices: 72668617--72668732 Score: 146
Period size: 53 Copynumber: 2.2 Consensus size: 54
72668607 CTCGATTTAC
* * *
72668617 AAAATTACCGAAATACCCTTGTAGGGTAGAAATACTGAA-ATA-CCTTGTAGGGT
1 AAAATTACCGAAATACCCCTATAGGGTAGAAATAC-CAAGATACCCTTGTAGGGT
* * * *
72668670 AGAATTACTGAAATACCCCTATAGGGTAGAATTACCAAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCCCTATAGGGTAGAAATACCAAGATACCCTTGTAGGGT
72668724 AAAATTACC
1 AAAATTACC
72668733 ATTTTACCCC
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.04
53 33 0.63
54 17 0.33
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (54 bp):
AAAATTACCGAAATACCCCTATAGGGTAGAAATACCAAGATACCCTTGTAGGGT
Found at i:72668729 original size:27 final size:26
Alignment explanation
Indices: 72668617--72668733 Score: 112
Period size: 27 Copynumber: 4.4 Consensus size: 26
72668607 CTCGATTTAC
72668617 AAAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACC-AAATACCCTTGTAGGGT
*
72668644 AGAAA-TACTGAAATA-CCTTGTAGGGT
1 A-AAATTAC-CAAATACCCTTGTAGGGT
* * * *
72668670 AGAATTACTGAAATACCCCTATAGGGT
1 AAAATTAC-CAAATACCCTTGTAGGGT
* *
72668697 AGAATTACCAAGATACCCTTGTGGGGT
1 AAAATTACCAA-ATACCCTTGTAGGGT
72668724 AAAATTACCA
1 AAAATTACCA
72668734 TTTTACCCCT
Statistics
Matches: 76, Mismatches: 9, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
25 2 0.03
26 24 0.32
27 47 0.62
28 3 0.04
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.26
Consensus pattern (26 bp):
AAAATTACCAAATACCCTTGTAGGGT
Found at i:72669082 original size:31 final size:32
Alignment explanation
Indices: 72669044--72669105 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
72669034 CTCGCTGCAA
* *
72669044 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
72669075 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
72669106 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:72669276 original size:6 final size:6
Alignment explanation
Indices: 72669245--72669363 Score: 93
Period size: 6 Copynumber: 19.3 Consensus size: 6
72669235 TTGCATTCAC
* * *
72669245 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
72669294 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTTTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
72669344 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
72669364 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 22
0.73 0.10 0.18
Matches are distributed among these distances:
5 6 0.07
6 71 0.79
7 10 0.11
8 3 0.03
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:72669276 original size:25 final size:27
Alignment explanation
Indices: 72669247--72669343 Score: 96
Period size: 25 Copynumber: 3.6 Consensus size: 27
72669237 GCATTCACAT
72669247 TCTGATTTTGATTCTGTTACCTGATACTGA
1 TCTGATTTTGATTCTGTTACCTGAT-C--A
72669277 TTCTGATTTTGATTCTGTTACCTGAT-A
1 -TCTGATTTTGATTCTGTTACCTGATCA
*
72669304 -CTGATTCTGATTCTGATT--CTG-TCA
1 TCTGATTTTGATTCTG-TTACCTGATCA
*
72669328 CCTGATTTTGATTCTG
1 TCTGATTTTGATTCTG
72669344 ATTCTGATTC
Statistics
Matches: 61, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
23 1 0.02
24 4 0.07
25 28 0.46
26 2 0.03
27 1 0.02
31 25 0.41
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (27 bp):
TCTGATTTTGATTCTGTTACCTGATCA
Found at i:72669277 original size:19 final size:19
Alignment explanation
Indices: 72669255--72669312 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
72669245 ATTCTGATTT
72669255 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
72669274 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
72669286 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
72669305 TGATTCTG
1 TGATTCTG
72669313 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:72669280 original size:31 final size:31
Alignment explanation
Indices: 72669245--72669379 Score: 175
Period size: 31 Copynumber: 4.4 Consensus size: 31
72669235 TTGCATTCAC
*
72669245 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
72669276 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* **
72669307 ATTCTGATTCTGATTCTGTCACCTGATTTTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
72669338 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
72669368 TTTCTTATTCTG
1 ATTCTGATTCTG
72669380 TAATGGGTTA
Statistics
Matches: 94, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
30 17 0.18
31 75 0.80
32 2 0.02
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:72672176 original size:17 final size:18
Alignment explanation
Indices: 72672138--72672187 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 18
72672128 GTTCGCATAA
*
72672138 AATAACAATTCATGC-AT
1 AATAACAATTCATTCAAT
72672155 AATAACAATTCATTCAAT
1 AATAACAATTCATTCAAT
* *
72672173 -ATAATAATTTATTCA
1 AATAACAATTCATTCA
72672188 TACCACATCG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 27 0.93
18 2 0.07
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (18 bp):
AATAACAATTCATTCAAT
Found at i:72673637 original size:34 final size:30
Alignment explanation
Indices: 72673560--72673644 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 30
72673550 ATTACAAGCC
*
72673560 CACGAATATATATTATATA-ACACAAAAAT
1 CACGCATATATATTATATATACACAAAAAT
*
72673589 CACGCATATGTATTATATATA-ACAAAACCAT
1 CACGCATATATATTATATATACACAAAA--AT
72673620 GCACGCATATTTATATTATATATAC
1 -CACGCATA--TATATTATATATAC
72673645 CTATCTATTT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
29 23 0.50
30 1 0.02
31 2 0.04
32 8 0.17
34 12 0.26
ACGTcount: A:0.46, C:0.16, G:0.06, T:0.32
Consensus pattern (30 bp):
CACGCATATATATTATATATACACAAAAAT
Found at i:72673640 original size:32 final size:31
Alignment explanation
Indices: 72673568--72673641 Score: 89
Period size: 32 Copynumber: 2.4 Consensus size: 31
72673558 CCCACGAATA
72673568 TATATTATATAACACAAAAATCACGCATATG
1 TATATTATATAACACAAAAATCACGCATATG
* *
72673599 TAT-TATATATAACA-AAACCATGCACGCATATT
1 TATAT-TATATAACACAAA-AAT-CACGCATATG
72673631 TATATTATATA
1 TATATTATATA
72673642 TACCTATCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
30 4 0.11
31 14 0.38
32 18 0.49
33 1 0.03
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.34
Consensus pattern (31 bp):
TATATTATATAACACAAAAATCACGCATATG
Found at i:72677845 original size:40 final size:40
Alignment explanation
Indices: 72677788--72677965 Score: 279
Period size: 40 Copynumber: 4.5 Consensus size: 40
72677778 CAGATGATAA
72677788 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72677828 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72677868 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
72677908 CCGGGCTAAGTCTCGAAGGAATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
72677948 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72677966 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 16 0.12
40 112 0.88
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72684498 original size:40 final size:40
Alignment explanation
Indices: 72684442--72684618 Score: 268
Period size: 40 Copynumber: 4.5 Consensus size: 40
72684432 AGATGATAAT
72684442 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
72684482 CGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * *
72684522 CGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTATTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
72684562 CGGGCTAAGTCCCGAAGGAATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
*
72684602 C-GGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
72684619 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 17 0.13
40 110 0.87
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:72692217 original size:40 final size:40
Alignment explanation
Indices: 72692172--72692338 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
72692162 CGGAATATAA
72692172 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
72692212 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
72692252 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72692292 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72692331 CCGGATAT
1 CCGGATAT
72692339 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72700214 original size:40 final size:40
Alignment explanation
Indices: 72700169--72700335 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
72700159 CGGAATATAA
72700169 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
72700209 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
72700249 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72700289 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72700328 CCGGATAT
1 CCGGATAT
72700336 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72702983 original size:28 final size:28
Alignment explanation
Indices: 72702918--72703016 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
72702908 CATGAGATTG
* * *
72702918 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
72702947 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
72702975 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
72703003 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72703017 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:72708588 original size:29 final size:29
Alignment explanation
Indices: 72708556--72708716 Score: 207
Period size: 29 Copynumber: 5.5 Consensus size: 29
72708546 ATAGTGAATC
72708556 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
72708585 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
72708615 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* ** *
72708644 CGCACACTTAGTGCT-TGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AGCT
* * * * *
72708673 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAGCT
72708703 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72708717 AATCTTGTCA
Statistics
Matches: 118, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
28 6 0.05
29 62 0.53
30 47 0.40
31 3 0.03
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:72708648 original size:59 final size:58
Alignment explanation
Indices: 72708556--72708716 Score: 209
Period size: 59 Copynumber: 2.7 Consensus size: 58
72708546 ATAGTGAATC
*
72708556 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGC-TATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTTATATAA---TCAAACT
*
72708615 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTTATATAATCAAACT
* * * * *
72708673 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
72708717 AATCTTGTCA
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
57 2 0.02
58 20 0.22
59 64 0.70
60 6 0.07
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (58 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTTATATAATCAAACT
Found at i:72708707 original size:88 final size:88
Alignment explanation
Indices: 72708556--72708716 Score: 225
Period size: 88 Copynumber: 1.8 Consensus size: 88
72708546 ATAGTGAATC
** * * * * *
72708556 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTCGCACA
1 CGCACACTTAGTGCTATATATAATCAACTCGCACACTTAGTGCTATACAATTTTAAACCCGCACA
72708621 CTTAGTGCTATATATTTTCAGCT
66 CTTAGTGCTATATATTTTCAGCT
* *
72708644 CGCACACTTAGTGCT-TGTATAATCAAACTCGCACACTTAGTGCTGTACAATTTTAAACCCGCAC
1 CGCACACTTAGTGCTATATATAATC-AACTCGCACACTTAGTGCTATACAATTTTAAACCCGCAC
72708708 ACTTAGTGC
65 ACTTAGTGC
72708717 AATCTTGTCA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
87 6 0.10
88 57 0.90
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (88 bp):
CGCACACTTAGTGCTATATATAATCAACTCGCACACTTAGTGCTATACAATTTTAAACCCGCACA
CTTAGTGCTATATATTTTCAGCT
Found at i:72716574 original size:30 final size:30
Alignment explanation
Indices: 72716519--72716678 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
72716509 ATAGTGAATC
72716519 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
72716548 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
72716578 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
72716607 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
72716635 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
72716665 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72716679 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:72716611 original size:59 final size:57
Alignment explanation
Indices: 72716519--72716678 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
72716509 ATAGTGAATC
*
72716519 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
72716578 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
72716635 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
72716679 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:72724567 original size:47 final size:47
Alignment explanation
Indices: 72724513--72724889 Score: 562
Period size: 47 Copynumber: 8.1 Consensus size: 47
72724503 TTAGGATTTT
** * * *
72724513 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
72724560 ATGTGATGAATGTGAACATGCATATGTGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
72724607 ATGTGATGAATGTGAACATGCATATGTGCGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
72724654 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
72724701 ATGTGATGAATGTGAACAT--ATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72724746 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
72724793 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
72724840 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
72724887 ATG
1 ATG
72724890 CGAAATGTGT
Statistics
Matches: 311, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
45 45 0.14
47 263 0.85
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:72724752 original size:22 final size:22
Alignment explanation
Indices: 72724725--72724799 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
72724715 AACATATATG
72724725 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
72724747 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
72724772 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
72724794 TGTGAT
1 TGTGAT
72724800 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:72724756 original size:186 final size:187
Alignment explanation
Indices: 72724513--72724889 Score: 569
Period size: 186 Copynumber: 2.0 Consensus size: 187
72724503 TTAGGATTTT
**
72724513 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAA-GCATATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
* *
72724578 TGCATATGTGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGCGATAAGG
65 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGCGATAAGG
* * * *
72724643 CCGAATGGCCAATGTGATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCA
130 CAGAATGGCCAATGTGATGAACGTGGAA-ATGCATATATGTGATAAAGCCGAATGGCCA
* * *
72724701 ATGTGATGAATGTGAA-CATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
1 ATGTGATGAATGTGAAGCATATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACAT
* *
72724765 GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGC
66 GCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGCGATAAGGC
* * * *
72724830 AGAATGGCCAATGTGATGAACGTGGAAGTGTATATATGTGGTAAAGCCGAATGGCTA
131 AGAATGGCCAATGTGATGAACGTGGAAATGCATATATGTGATAAAGCCGAATGGCCA
72724887 ATG
1 ATG
72724890 CGAAATGTGT
Statistics
Matches: 171, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
186 152 0.89
187 3 0.02
188 16 0.09
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (187 bp):
ATGTGATGAATGTGAAGCATATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACAT
GCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGCGATAAGGC
AGAATGGCCAATGTGATGAACGTGGAAATGCATATATGTGATAAAGCCGAATGGCCA
Found at i:72724783 original size:139 final size:140
Alignment explanation
Indices: 72724513--72724849 Score: 568
Period size: 139 Copynumber: 2.4 Consensus size: 140
72724503 TTAGGATTTT
** * * *
72724513 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
72724578 TGCATATGTGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGCGATAAGG
66 T-CATATGTGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGCGATAAGG
72724643 CCGAATGGCCA
130 CCGAATGGCCA
*
72724654 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
72724719 T-ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGC
66 TCATATGTGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGCGATAAGGC
72724783 CGAATGGCCA
131 CGAATGGCCA
*
72724793 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
72724850 CGTGGAAGTG
Statistics
Matches: 185, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
139 125 0.68
141 60 0.32
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TCATATGTGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGCGATAAGGC
CGAATGGCCA
Found at i:72724846 original size:22 final size:22
Alignment explanation
Indices: 72724771--72724846 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
72724761 ACATGCATAT
*
72724771 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
72724793 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
72724817 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
72724840 ATGTGAT
1 ATGTGAT
72724847 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:72724930 original size:46 final size:46
Alignment explanation
Indices: 72724863--72724999 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
72724853 GGAAGTGTAT
*
72724863 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATAAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
72724909 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
72724955 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
72725000 TGTATATATA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:72726507 original size:40 final size:40
Alignment explanation
Indices: 72726452--72726629 Score: 293
Period size: 40 Copynumber: 4.4 Consensus size: 40
72726442 TGAGAGTTAT
72726452 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
72726492 ATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
72726532 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
72726572 ATATATCTGGGCTAAGTAGTTCCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCT-A--AGTCCCGAAGAGCATTCGTGCTAGTG
72726615 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
72726630 ACCTCGAAGG
Statistics
Matches: 129, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
40 91 0.71
41 1 0.01
42 1 0.01
43 36 0.28
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:72726528 original size:23 final size:23
Alignment explanation
Indices: 72726462--72726568 Score: 67
Period size: 23 Copynumber: 5.2 Consensus size: 23
72726452 ATATATCCGG
72726462 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * *
72726485 GCT-AGT---G-ATA-TATTCGG
1 GCTAAGTCCCGAAGAGCATTCGT
72726502 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * * *
72726525 GCT-AGT---G-ATA-TATCCGG
1 GCTAAGTCCCGAAGAGCATTCGT
72726542 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
72726565 GCTA
1 GCTA
72726569 GTGATATATC
Statistics
Matches: 58, Mismatches: 14, Indels: 24
0.60 0.15 0.25
Matches are distributed among these distances:
17 15 0.26
18 10 0.17
19 2 0.03
21 2 0.03
22 10 0.17
23 19 0.33
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (23 bp):
GCTAAGTCCCGAAGAGCATTCGT
Found at i:72726701 original size:28 final size:28
Alignment explanation
Indices: 72726661--72726815 Score: 89
Period size: 28 Copynumber: 5.5 Consensus size: 28
72726651 GAATTATGAG
* *
72726661 GCACTGTGTGTGCAAGTTCTCCAACCGA
1 GCACTATGTGTGCAAGTTCTCCAATCGA
* * *** * *
72726689 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCAAGTTCTCCAATCGA
* *
72726717 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCAAGTTCTCCAATCGA
** * *
72726746 GCACTATGTGTGTGAGATTGGT--AATTGA
1 GCACTATGTGTGCAAG-TT-CTCCAATCGA
* **
72726774 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCAAGTTCTCCAATCGA
*
72726803 GCGCTATGTGTGC
1 GCACTATGTGTGC
72726816 GAAATCAGTC
Statistics
Matches: 98, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
27 1 0.01
28 53 0.54
29 43 0.44
30 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCAAGTTCTCCAATCGA
Found at i:72726724 original size:29 final size:28
Alignment explanation
Indices: 72726689--72726817 Score: 109
Period size: 29 Copynumber: 4.5 Consensus size: 28
72726679 CTCCAACCGA
* *
72726689 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
72726718 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
* *
72726746 GCACTATGTGTGTGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * *
72726775 GCACTATGTGTGCGAGTTCTTTAATCGA-
1 GCACTATGTGTGCGAGATC-GTAATTGAG
*
72726803 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
72726818 AATCAGTCAG
Statistics
Matches: 80, Mismatches: 16, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
28 36 0.45
29 44 0.55
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:72726747 original size:57 final size:57
Alignment explanation
Indices: 72726657--72726824 Score: 228
Period size: 57 Copynumber: 2.9 Consensus size: 57
72726647 GCTGGAATTA
* * * * * *
72726657 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
* **
72726714 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGTGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
* * *
72726771 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT
72726825 CAGTGGGCAC
Statistics
Matches: 96, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 96 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
Found at i:72727308 original size:16 final size:16
Alignment explanation
Indices: 72727287--72727320 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
72727277 TTAACTATGA
72727287 AAGAATGTACTAAATG
1 AAGAATGTACTAAATG
*
72727303 AAGAATGTGCTAAATG
1 AAGAATGTACTAAATG
72727319 AA
1 AA
72727321 ATAAATGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.06, G:0.21, T:0.24
Consensus pattern (16 bp):
AAGAATGTACTAAATG
Found at i:72730699 original size:47 final size:47
Alignment explanation
Indices: 72730645--72730998 Score: 618
Period size: 47 Copynumber: 7.5 Consensus size: 47
72730635 TTAGGATTTT
** * * * *
72730645 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATGTGCGATAAGGCCGAATGGCCA
* *
72730692 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGCGATAAGGCCGAATGGCCA
72730739 ATGTGATGAATGTGAACATGCATATGTGCGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGCGATAAGGCCGAATGGCCA
72730786 ATGTGATGAATGTGAACATGCATATGTGCGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGCGATAAGGCCGAATGGCCA
72730833 ATGTGATGAATGTGAACATGCATATGTGCGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGCGATAAGGCCGAATGGCCA
72730880 ATGTGATGAATGTGAACATGCATATGTGCGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGCGATAAGGCCGAATGGCCA
*
72730927 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGCGATAAGGCCGAATGGCCA
*
72730974 ATGTGATGAATGTGAATATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
72730999 ATGTAACACC
Statistics
Matches: 299, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 299 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGCGATAAGGCCGAATGGCCA
Found at i:72732426 original size:93 final size:93
Alignment explanation
Indices: 72732314--72732485 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72732304 CGCCCATAAG
* *
72732314 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72732379 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
72732407 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72732472 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72732486 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72732482 original size:46 final size:46
Alignment explanation
Indices: 72732307--72732482 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
72732297 TGTAACCCGC
* * *
72732307 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
72732353 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
72732403 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72732446 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72732483 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72733807 original size:22 final size:22
Alignment explanation
Indices: 72733779--72733854 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
72733769 ATTACAATAT
72733779 ATGTGATAAGGCTGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
* *
72733801 ATGTGATAAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCTG-A-ATGGC-CA
*
72733825 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
72733848 ATGTGAT
1 ATGTGAT
72733855 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 16 0.38
23 9 0.21
24 9 0.21
25 8 0.19
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:72733873 original size:47 final size:47
Alignment explanation
Indices: 72733775--72733897 Score: 149
Period size: 47 Copynumber: 2.6 Consensus size: 47
72733765 GGATATTACA
* *
72733775 ATATATGTGATAAGGCTGAATGGCCAATGTGATAAATGTGAACATGC
1 ATATATGTGATAAGGCAGAATGGCCAATGTGATAAACGTGAACATGC
* * *
72733822 ATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAA-GTGT
1 ATATATGTGATAAGGCAGAATGGCCAATGTGATAAACGT-GAACATGC
* * * *
72733869 ATATATGTGGTAAAGCCGAATGGCTAATG
1 ATATATGTGATAAGGCAGAATGGCCAATG
72733898 CGAAATGTGT
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
47 63 0.95
48 3 0.05
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATATATGTGATAAGGCAGAATGGCCAATGTGATAAACGTGAACATGC
Found at i:72733927 original size:46 final size:46
Alignment explanation
Indices: 72733871--72734007 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
72733861 GGAAGTGTAT
*
72733871 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
72733917 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATAG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
72733963 ATATGAGGTAAAGCCGAATGGCTAATGTGAGATCTGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
72734008 TGTATATATA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:72736918 original size:27 final size:27
Alignment explanation
Indices: 72736888--72736959 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
72736878 TACCATACAG
* **
72736888 GGGTATTTTGGTAGTTTTACAAATTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
** *
72736915 GGGTATTGCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
72736942 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
72736960 GTAAATCGAG
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:72736971 original size:27 final size:27
Alignment explanation
Indices: 72736951--72737480 Score: 611
Period size: 27 Copynumber: 19.6 Consensus size: 27
72736941 AGGGTATTTT
*
72736951 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72736978 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72737005 AGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
72737032 GGTAATTCTATAAACCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72737059 GGTAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
72737086 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
72737113 GGTAATTATGTAAAT-TAGGGATAAAAC
1 AGTAATTCTGTAAATCGAGGG-TAAAAC
* * *
72737140 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
72737167 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
72737194 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
72737221 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72737248 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72737275 AGTAATTTTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72737302 AATAATTCTGTAAA-CTGAGGGTAAAAT
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
72737329 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
72737356 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72737383 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
72737410 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72737437 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
72737464 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
72737481 GGAGTACTTT
Statistics
Matches: 439, Mismatches: 54, Indels: 20
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.02
27 424 0.97
28 8 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:72738807 original size:42 final size:43
Alignment explanation
Indices: 72738761--72738884 Score: 124
Period size: 43 Copynumber: 2.9 Consensus size: 43
72738751 TCTGAACTCA
* ***
72738761 TTCACCAACATT-TCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCAACATTATAGCCTGCTAGGCCCAAAGCCCGATATCAT
** *
72738803 TTCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCGATATTAT
1 TTCACCAACATTATAGCCTGCTAGGCCCAAAGCCCGATATCAT
* *** * *
72738846 CTCACTGGCATTATAGCCTGCTTGGCCCGAAGCCCGATA
1 TTCACCAACATTATAGCCTGCTAGGCCCAAAGCCCGATA
72738885 ATATTATTCA
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
42 10 0.14
43 60 0.86
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (43 bp):
TTCACCAACATTATAGCCTGCTAGGCCCAAAGCCCGATATCAT
Found at i:72738823 original size:43 final size:43
Alignment explanation
Indices: 72738775--72738884 Score: 157
Period size: 43 Copynumber: 2.6 Consensus size: 43
72738765 CCAACATTTC
** *
72738775 GCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGCATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATCATCTCACCGGCATTATA
* * *
72738818 GCCTGCTAGGCCCAAAGCCCGATATTATCTCACTGGCATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATCATCTCACCGGCATTATA
*
72738861 GCCTGCTTGGCCCGAAGCCCGATA
1 GCCTGCTAGGCCCGAAGCCCGATA
72738885 ATATTATTCA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.25
Consensus pattern (43 bp):
GCCTGCTAGGCCCGAAGCCCGATATCATCTCACCGGCATTATA
Found at i:72739542 original size:24 final size:24
Alignment explanation
Indices: 72739510--72739568 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
72739500 ACAAATGCAT
*
72739510 ATTAACCACTTTGACCGAGTGTCC
1 ATTAACCACTATGACCGAGTGTCC
72739534 ATTAACCACTATGACCGAGTGTCC
1 ATTAACCACTATGACCGAGTGTCC
*
72739558 GTTAACCACTA
1 ATTAACCACTA
72739569 ATTCATATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (24 bp):
ATTAACCACTATGACCGAGTGTCC
Found at i:72739851 original size:2 final size:2
Alignment explanation
Indices: 72739844--72739873 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
72739834 TACATTCAGC
72739844 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72739874 TCACATAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72744308 original size:42 final size:40
Alignment explanation
Indices: 72744230--72744330 Score: 114
Period size: 43 Copynumber: 2.4 Consensus size: 40
72744220 AGCTCGTACA
* * *
72744230 ATGCCATATCCCAGATATGGTCTTACATGTTATCATATATCG
1 ATGCCATATCCCAGACAGGGTCTTACACG-TATCATATA-CG
72744272 ATGCCACTATCCCAGACAGGGTCTTACACG-AGTCATATACG
1 ATGCCA-TATCCCAGACAGGGTCTTACACGTA-TCATATACG
*
72744313 ATGCCAATGTCCCAGACA
1 ATGCC-ATATCCCAGACA
72744331 TGGTTTTGCA
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
41 18 0.35
42 14 0.27
43 20 0.38
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (40 bp):
ATGCCATATCCCAGACAGGGTCTTACACGTATCATATACG
Found at i:72752706 original size:22 final size:22
Alignment explanation
Indices: 72752681--72752723 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
72752671 CTGTGATATT
*
72752681 TACGGTGTTGAGTCGTCCTGTC
1 TACGGTGTTGAGCCGTCCTGTC
72752703 TACGGTGTTGAGCCGTCCTGT
1 TACGGTGTTGAGCCGTCCTGT
72752724 TGACTTAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.23, G:0.33, T:0.35
Consensus pattern (22 bp):
TACGGTGTTGAGCCGTCCTGTC
Found at i:72752894 original size:27 final size:27
Alignment explanation
Indices: 72752863--72752915 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
72752853 ACATCTGATA
72752863 CTGATTCT-GTACTGGGCTTAGGCCCAC
1 CTGATTCTAGTACTGGGC-TAGGCCCAC
* *
72752890 CTGATTCTATTAGTGGGCTAGGCCCA
1 CTGATTCTAGTACTGGGCTAGGCCCA
72752916 ACTGTTACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.17, C:0.26, G:0.26, T:0.30
Consensus pattern (27 bp):
CTGATTCTAGTACTGGGCTAGGCCCAC
Found at i:72755920 original size:6 final size:6
Alignment explanation
Indices: 72755831--72755919 Score: 126
Period size: 6 Copynumber: 14.7 Consensus size: 6
72755821 CAAAAGAATT
* * *
72755831 TTTTCA TTTTCA TTTTCA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
72755879 TTTTAA TTTTAA TTTTAA TTTTGTAA TTTTAA TTTT-A TTTT
1 TTTTAA TTTTAA TTTTAA -TTT-TAA TTTTAA TTTTAA TTTT
72755920 TCTGTTTCAT
Statistics
Matches: 80, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
5 5 0.06
6 66 0.82
7 6 0.08
8 3 0.04
ACGTcount: A:0.27, C:0.03, G:0.01, T:0.69
Consensus pattern (6 bp):
TTTTAA
Found at i:72764220 original size:68 final size:66
Alignment explanation
Indices: 72764148--72764323 Score: 171
Period size: 67 Copynumber: 2.6 Consensus size: 66
72764138 CATCATGTGT
* * *
72764148 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGGGTGATACCAGTGAAGGACACCA
72764211 TGTAG
62 TGTAG
** * * *
72764216 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATACCA-GTGAAGGACACCATGT
72764281 AG
65 AG
* * *
72764283 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTG
1 ACAAGAGAGCTACGACATATA-TGTAGCTAGGTCGCATGGGTG
72764324 GTACTAAGTG
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
64 24 0.26
65 3 0.03
66 19 0.21
67 31 0.34
68 15 0.16
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATACCAGTGAAGGACACCATGTA
G
Found at i:72764253 original size:64 final size:64
Alignment explanation
Indices: 72764172--72764355 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
72764162 AGACATTATG
* * *
72764172 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
72764236 ATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
72764301 AA
63 AA
* * *
72764303 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
72764356 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 31 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:72770097 original size:40 final size:40
Alignment explanation
Indices: 72770038--72770179 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
72770028 AAATTGAATG
* * *
72770038 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
72770078 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
72770118 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
72770158 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
72770180 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:72770180 original size:40 final size:39
Alignment explanation
Indices: 72770077--72770205 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
72770067 TGCTGGAAAT
* * *
72770077 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
72770117 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
72770157 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
72770197 TATATCCGG
1 TATATCCGG
72770206 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:72778114 original size:40 final size:40
Alignment explanation
Indices: 72778055--72778196 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
72778045 AAATTGAATG
* * *
72778055 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
72778095 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
72778135 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
72778175 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
72778197 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:72778197 original size:40 final size:39
Alignment explanation
Indices: 72778094--72778222 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
72778084 TGCTGGAAAT
* * *
72778094 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
72778134 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
72778174 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
72778214 TATATCCGG
1 TATATCCGG
72778223 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:72782368 original size:20 final size:20
Alignment explanation
Indices: 72782343--72782383 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
72782333 ACCACTACGG
*
72782343 TAATCTCAGTAATACGTCAC
1 TAATCTCAGTAATACGACAC
72782363 TAATCTCAGTAATACGACAC
1 TAATCTCAGTAATACGACAC
72782383 T
1 T
72782384 CGTATCCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (20 bp):
TAATCTCAGTAATACGACAC
Found at i:72785633 original size:40 final size:39
Alignment explanation
Indices: 72785588--72785795 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
72785578 CGGAATACAA
*
72785588 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72785628 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72785668 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
72785708 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
72785748 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
72785788 CCGGATAT
1 CCGGATAT
72785796 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72785728 original size:80 final size:81
Alignment explanation
Indices: 72785588--72785793 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
72785578 CGGAATACAA
* * *
72785588 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
72785652 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
72785668 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
72785731 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
72785748 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
72785794 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:72789461 original size:43 final size:42
Alignment explanation
Indices: 72789378--72789484 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 42
72789368 GATGCCTCTA
*
72789378 TCCCAGACAAGGTCTTATACGAAATCAGATACGATGCCGATG
1 TCCCAGACAAGGTCTTATACGAAATCAGATACGAGGCCGATG
* *
72789420 TCCCAGACATGGTCTTATACATAAATCTCA-AT-CGAGGCCGATG
1 TCCCAGACAAGGTCTTATAC-GAAA--TCAGATACGAGGCCGATG
* *
72789463 TCCCAGACACGGTCTTACACGA
1 TCCCAGACAAGGTCTTATACGA
72789485 TATCTCAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
42 20 0.36
43 31 0.55
44 2 0.04
45 3 0.05
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (42 bp):
TCCCAGACAAGGTCTTATACGAAATCAGATACGAGGCCGATG
Found at i:72793191 original size:68 final size:70
Alignment explanation
Indices: 72793119--72793316 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
72793109 ACACCCTGTA
* * * *
72793119 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
72793181 ATAAAT
65 ATAAAT
*
72793187 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
72793252 ATAAAT
65 ATAAAT
*
72793258 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
72793317 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:72793230 original size:41 final size:41
Alignment explanation
Indices: 72793185--72793302 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72793175 TGAAAGATAA
72793185 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72793226 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72793256 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72793297 ATGTAG
1 ATGTAG
72793303 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72793242 original size:71 final size:71
Alignment explanation
Indices: 72793153--72793316 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72793143 GAGATGTATC
72793153 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72793218 AGGACA
66 AGGACA
72793224 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72793289 AGGACA
66 AGGACA
72793295 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72793317 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72796774 original size:93 final size:93
Alignment explanation
Indices: 72796662--72796833 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
72796652 CGCCCATAAG
* *
72796662 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGAACTCAACTC
72796726 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
72796755 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
72796820 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72796834 TCAACCATTC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72796828 original size:46 final size:46
Alignment explanation
Indices: 72796655--72796830 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
72796645 TGTAACCCGC
* *
72796655 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
72796701 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
72796751 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
72796794 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72796831 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72796849 original size:46 final size:44
Alignment explanation
Indices: 72796663--72796849 Score: 139
Period size: 46 Copynumber: 4.0 Consensus size: 44
72796653 GCCCATAAGC
* * * * *
72796663 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GG-ATGC-CAACCATCTAGT
*
72796709 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
72796756 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
*
72796802 GAACTCGAACTCAACTCAACGAGTTCGGATGCTCAACCATTCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCA-TCTAGT
72796848 GA
1 GA
72796850 CATGTCACTT
Statistics
Matches: 113, Mismatches: 15, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
43 1 0.01
44 11 0.10
45 4 0.04
46 60 0.53
47 31 0.27
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Done.