Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 243 of 770
Found at i:72810925 original size:27 final size:27
Alignment explanation
Indices: 72810895--72810956 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
72810885 ATTTACTAAA
*
72810895 ATACCCCTAAGAATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATAACCATT
* *
72810922 ATACCCAT-AGGTGCAAAATAACCATT
1 ATACCCCTAAGATGCAAAATAACCATT
72810948 ATACCCCTA
1 ATACCCCTA
72810957 GGGTTAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 2 0.07
26 20 0.69
27 7 0.24
ACGTcount: A:0.42, C:0.26, G:0.08, T:0.24
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATAACCATT
Found at i:72811134 original size:27 final size:26
Alignment explanation
Indices: 72811060--72811171 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
72811050 GGAGGAAGCT
* *
72811060 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTAGTGGCTCTGCCAC-AATATCTG
* *
72811087 TTTCTAGTGGCTAC-GCTACAAATATTTG
1 -TTCTAGTGGCT-CTGCCAC-AATATCTG
*
72811115 TTCTAATGGCTCTGCCACAATATCTG
1 TTCTAGTGGCTCTGCCACAATATCTG
* *
72811141 TATCTAGTGACTCTGTCACAATATCTG
1 T-TCTAGTGGCTCTGCCACAATATCTG
72811168 TTCT
1 TTCT
72811172 GGCAGCCATG
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
26 12 0.17
27 37 0.52
28 22 0.31
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (26 bp):
TTCTAGTGGCTCTGCCACAATATCTG
Found at i:72818807 original size:27 final size:27
Alignment explanation
Indices: 72818777--72818840 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
72818767 ATTTACTAAA
* *
72818777 ATACCCCTAAGAATG-AAAGTTACCATT
1 ATACCCCTAAG-ATGCAAAATGACCATT
*
72818804 ATACCCCT-AGGTGCAAAATGACCATT
1 ATACCCCTAAGATGCAAAATGACCATT
72818830 ATACCCCTAAG
1 ATACCCCTAAG
72818841 GTTAATTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 2 0.06
26 20 0.62
27 10 0.31
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.23
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATGACCATT
Found at i:72818981 original size:27 final size:28
Alignment explanation
Indices: 72818943--72819055 Score: 112
Period size: 27 Copynumber: 4.2 Consensus size: 28
72818933 GGAGGAAACG
72818943 TTCTGGTGGCTATGCCACAAATATCT-T
1 TTCTGGTGGCTATGCCACAAATATCTGT
* * *
72818970 TTCTAGTGGCTACGCTACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
72818998 TT-TGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* * *
72819024 ATCTGGTGAG-TCTGTCAC-AATATCTG-
1 TTCTGGTG-GCTATGCCACAAATATCTGT
72819050 TTCTGG
1 TTCTGG
72819056 CAGCCATGTG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 15 0.21
27 54 0.74
28 4 0.05
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:72825410 original size:42 final size:43
Alignment explanation
Indices: 72825310--72825455 Score: 129
Period size: 43 Copynumber: 3.4 Consensus size: 43
72825300 CAACGCCGAC
* * **
72825310 GTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTATATGTAAATCAATATCGATGCCAAT
* * *
72825353 GTCCTAGACAAGGTCTTATATG-AAATCAGATA-CGATGTCAAT
1 GTCCCAGACATGGTCTTATATGTAAATCA-ATATCGATGCCAAT
* * * **
72825395 GTCCCAGGCATGGTCTTATACT-TAAATCTCA-ATCGAGGCCGGT
1 GTCCCAGACATGGTCTTATA-TGTAAATC-AATATCGATGCCAAT
72825438 GTCCCAGACATGGTCTTA
1 GTCCCAGACATGGTCTTA
72825456 CACGATATCT
Statistics
Matches: 82, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
42 30 0.37
43 52 0.63
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTATATGTAAATCAATATCGATGCCAAT
Found at i:72828769 original size:20 final size:20
Alignment explanation
Indices: 72828744--72828781 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
72828734 GACTAAACTG
72828744 AGAACTTTAG-AAATTTTTAC
1 AGAAC-TTAGAAAATTTTTAC
72828764 AGAACTTAGAAAATTTTT
1 AGAACTTAGAAAATTTTT
72828782 CCACTATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (20 bp):
AGAACTTAGAAAATTTTTAC
Found at i:72833857 original size:16 final size:16
Alignment explanation
Indices: 72833836--72833882 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
72833826 ATTGGCAAAA
72833836 GCCGAAATA-CCGAAAT
1 GCCGAAA-AGCCGAAAT
72833852 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
* *
72833868 GCCAAAAAGCTGAAA
1 GCCGAAAAGCCGAAA
72833883 GTTTGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 1 0.04
16 27 0.96
ACGTcount: A:0.47, C:0.23, G:0.21, T:0.09
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:72834150 original size:29 final size:28
Alignment explanation
Indices: 72834093--72834207 Score: 122
Period size: 29 Copynumber: 4.0 Consensus size: 28
72834083 GTGAGCATGA
* * *
72834093 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
72834121 ATATAAATGTGATTTGGGCCTAATGTGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
72834150 ATATATAGGTGATTTGGGCCAAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
72834179 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
72834207 A
1 A
72834208 GATACAGGTA
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 26 0.36
29 46 0.64
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:72834178 original size:58 final size:57
Alignment explanation
Indices: 72834106--72834216 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
72834096 TGAATGTGAC
* * * * *
72834106 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGTGCCATATATAGGTGATT
1 TGGGCCAAACGGGCCATATAAATATGA-TTGGGCCTAATGGGCCAGATACAGGTGATT
* * *
72834164 TGGGCCAAATGGGCCATATGAATATGATTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCAAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGT
72834217 ATGTGAAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 22 0.49
58 23 0.51
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (57 bp):
TGGGCCAAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:72838411 original size:16 final size:16
Alignment explanation
Indices: 72838389--72838427 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
72838379 AAGCCGAAAT
72838389 GCCGAAATG-CAGAAAA
1 GCCGAAATGCCA-AAAA
*
72838405 GCTGAAATGCCAAAAA
1 GCCGAAATGCCAAAAA
72838421 GCCGAAA
1 GCCGAAA
72838428 GTTTGGCTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 18 0.90
17 2 0.10
ACGTcount: A:0.49, C:0.21, G:0.23, T:0.08
Consensus pattern (16 bp):
GCCGAAATGCCAAAAA
Found at i:72838427 original size:24 final size:24
Alignment explanation
Indices: 72838377--72838427 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
72838367 ATGAATCGGC
* *
72838377 AAAAGCCGAAATGCCGAAATGCAG
1 AAAAGCCGAAATGCCAAAAAGCAG
* *
72838401 AAAAGCTGAAATGCCAAAAAGCCG
1 AAAAGCCGAAATGCCAAAAAGCAG
72838425 AAA
1 AAA
72838428 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.51, C:0.20, G:0.22, T:0.08
Consensus pattern (24 bp):
AAAAGCCGAAATGCCAAAAAGCAG
Found at i:72838693 original size:29 final size:28
Alignment explanation
Indices: 72838638--72838749 Score: 125
Period size: 29 Copynumber: 3.9 Consensus size: 28
72838628 GTGAGCATGA
* * *
72838638 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
72838666 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
72838695 TTATACAGGTGATTTGGGCCAAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
72838724 ATATAAATATGATTGGGCTTAATGGG
1 ATATAAATGTGATTGGGCCTAATGGG
72838750 TCAGATATAG
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
28 23 0.33
29 47 0.67
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:72844808 original size:66 final size:66
Alignment explanation
Indices: 72844702--72844834 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
72844692 TTTAGTTAAT
*
72844702 TTTGTCCTTAATATCCAAATTACTAAAATACCCTTAATGCATAACTTTGAGATTTCACCTACCAT
1 TTTGTCCTTAATAGCCAAATTACTAAAATACCCTTAATGCATAACTTTGAGATTTCACCTACCAT
72844767 G
66 G
* *
72844768 TTTGTCCTTATTAGCCAAATTACTAAAATACCCTTAATGCATAACTTTGAGATTTCACCTGCCAT
1 TTTGTCCTTAATAGCCAAATTACTAAAATACCCTTAATGCATAACTTTGAGATTTCACCTACCAT
72844833 G
66 G
72844834 T
1 T
72844835 CCATTTTTGT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.37
Consensus pattern (66 bp):
TTTGTCCTTAATAGCCAAATTACTAAAATACCCTTAATGCATAACTTTGAGATTTCACCTACCAT
G
Found at i:72849216 original size:40 final size:39
Alignment explanation
Indices: 72849171--72849377 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 39
72849161 CGGAATACAA
*
72849171 CGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGCC
* * *
72849211 CGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCC
1 CGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGCC
* * *
72849251 CGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGCC
* *** *
72849291 CGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAACC
1 CGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGCC
** * * *
72849331 CGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCC
1 CGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGCC
72849371 CGGATAT
1 CGGATAT
72849378 CATTCAATTG
Statistics
Matches: 140, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 133 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
CGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGCC
Found at i:72849310 original size:80 final size:80
Alignment explanation
Indices: 72849171--72849376 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
72849161 CGGAATACAA
* * *
72849171 CGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-G
1 CGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATGG
*
72849235 CCTTCGGGTATTAGCC
65 CCTTCGGGTATTAACC
* * **
72849251 CGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATGG
1 CGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATGG
*
72849315 CCTTCGGGTCTTAACC
65 CCTTCGGGTATTAACC
** * ** * *
72849331 CGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
72849377 TCATTCAATT
Statistics
Matches: 106, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGGC
CTTCGGGTATTAACC
Found at i:72855588 original size:29 final size:29
Alignment explanation
Indices: 72855556--72855628 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
72855546 CTTCGAGCTC
* *
72855556 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
72855585 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
72855614 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
72855629 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:72869706 original size:67 final size:67
Alignment explanation
Indices: 72869598--72869781 Score: 242
Period size: 73 Copynumber: 2.7 Consensus size: 67
72869588 GAGGAAGCGT
* * * *
72869598 TCTGGCAGCTTCGCTGCAATCTGGTGGCCTCGCTACATATATCTGTTCTGGCGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATATGTTCTGGCGACTTCGTCACAA
72869663 TA
66 TA
* * *
72869665 TCTGGCAGCCTCACTGCAATCTGGTGGCTTCACCACTTATATATATATATGTTCTGGTGACTTCG
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCAC------ATATATATGTTCTGGCGACTTCG
*
72869730 TCATAATA
60 TCACAATA
72869738 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATAT
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATAT
72869782 ATTTGTTCTG
Statistics
Matches: 101, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
67 39 0.39
73 62 0.61
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.33
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATATGTTCTGGCGACTTCGTCACAA
TA
Found at i:72869738 original size:73 final size:71
Alignment explanation
Indices: 72869634--72869794 Score: 250
Period size: 73 Copynumber: 2.2 Consensus size: 71
72869624 GCCTCGCTAC
* *
72869634 ATATATCTGTTCTGGCGACTTCGTCACAATATCTGGCAGCCTCACTGCAATCTGGTGGCTTCACC
1 ATATATATGTTCTGGTGACTTCGTCACAATATCTGGCAGCCTCACTGCAATCTGGTGGCTTCACC
72869699 ACTTATAT
66 AC--ATAT
* * *
72869707 ATATATATGTTCTGGTGACTTCGTCATAATATCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCC
1 ATATATATGTTCTGGTGACTTCGTCACAATATCTGGCAGCCTCACTGCAATCTGGTGGCTTCACC
72869772 ACATAT
66 ACATAT
*
72869778 ATATATTTGTTCTGGTG
1 ATATATATGTTCTGGTG
72869795 GCCTAGCCAC
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
71 20 0.24
73 62 0.76
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (71 bp):
ATATATATGTTCTGGTGACTTCGTCACAATATCTGGCAGCCTCACTGCAATCTGGTGGCTTCACC
ACATAT
Found at i:72871234 original size:42 final size:44
Alignment explanation
Indices: 72871188--72871284 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 44
72871178 TCCCGGACAG
* * *
72871188 GGTCTTACATG-AAATCA-AA-TACGATGCTAAAATCCTAGATGT
1 GGTCTTACACGTAAATCATAAGT-CGATGCCAAAATCCCAGATGT
* **
72871230 GGTCTTACACGTAAATCATAAGTTGATGCCAACGTCCCAGATGT
1 GGTCTTACACGTAAATCATAAGTCGATGCCAAAATCCCAGATGT
72871274 GGTCTTACACG
1 GGTCTTACACG
72871285 ATAACACATA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 10 0.22
43 6 0.13
44 29 0.63
45 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (44 bp):
GGTCTTACACGTAAATCATAAGTCGATGCCAAAATCCCAGATGT
Found at i:72875415 original size:39 final size:39
Alignment explanation
Indices: 72875361--72875440 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
72875351 TCACAGACAA
*
72875361 CAGGCACTGATTCAAATTTCTTTTCTGACACTTTTGAAT
1 CAGGCACTGATTCAAATTTCTTTTCTGACACCTTTGAAT
72875400 CAGGCACTGATTCAAATTTCTTTTCTGACACCTTTGAAT
1 CAGGCACTGATTCAAATTTCTTTTCTGACACCTTTGAAT
72875439 CA
1 CA
72875441 ATCACATAGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (39 bp):
CAGGCACTGATTCAAATTTCTTTTCTGACACCTTTGAAT
Found at i:72877966 original size:41 final size:43
Alignment explanation
Indices: 72877889--72878046 Score: 189
Period size: 44 Copynumber: 3.7 Consensus size: 43
72877879 AGCTCGTACA
* * * *
72877889 ATGCCAACGTCCCAGACGTAGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
*
72877932 ATGCCATTGTCCCAGA-G-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
* *
72877972 ATGCCAATGTCCTAGACGTGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AAATCA-AATATCG
* *
72878016 ATGCCAACGTCCCAGATGTGGTCTTACACGA
1 ATGCCAATGTCCCAGACGTGGTCTTACACGA
72878047 TAACACATAT
Statistics
Matches: 99, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
40 15 0.15
41 20 0.20
42 12 0.12
43 22 0.22
44 30 0.30
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:72882577 original size:40 final size:40
Alignment explanation
Indices: 72882518--72882659 Score: 115
Period size: 40 Copynumber: 3.5 Consensus size: 40
72882508 AAATTGAATG
* * * *
72882518 ATATCCGGACTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
72882558 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
72882598 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
72882638 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
72882660 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 3 0.04
40 82 0.96
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:72882660 original size:40 final size:39
Alignment explanation
Indices: 72882557--72882685 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
72882547 TGCTGGAAAT
* * *
72882557 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
72882597 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
72882637 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
72882677 TATATCCGG
1 TATATCCGG
72882686 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:72891161 original size:40 final size:41
Alignment explanation
Indices: 72891110--72891292 Score: 158
Period size: 40 Copynumber: 4.7 Consensus size: 41
72891100 ATAGTGATTA
*
72891110 GCACAATTGCCTTCGGGAATTAGCCCGGATTTAG-TAACTC
1 GCACAAATGCCTTCGGGAATTAGCCCGGATTTAGATAACTC
* * * * *
72891150 GTACGAATGCCTTCGGGACTTAACCCGG-TTTTGATAACTC
1 GCACAAATGCCTTCGGGAATTAGCCCGGATTTAGATAACTC
*
72891190 GCACAAATG-C--C-----TTAGCCCGG-TTTTGATAACTC
1 GCACAAATGCCTTCGGGAATTAGCCCGGATTTAGATAACTC
* *
72891222 GCACAAATGCCTTCGGGAATT-GACCCGGATTTAG-TCACTTA
1 GCACAAATGCCTTCGGGAATTAG-CCCGGATTTAGATAAC-TC
* *
72891263 GCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGAATTAGCCCGGAT
72891293 ACCATTCGAA
Statistics
Matches: 116, Mismatches: 14, Indels: 25
0.75 0.09 0.16
Matches are distributed among these distances:
32 29 0.25
33 1 0.01
35 1 0.01
37 1 0.01
39 6 0.05
40 46 0.40
41 31 0.27
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (41 bp):
GCACAAATGCCTTCGGGAATTAGCCCGGATTTAGATAACTC
Found at i:72891214 original size:32 final size:32
Alignment explanation
Indices: 72891168--72891234 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
72891158 GCCTTCGGGA
72891168 CTTAACCCGGTTTTGATAACTCGCACAAATGC
1 CTTAACCCGGTTTTGATAACTCGCACAAATGC
*
72891200 CTTAGCCCGGTTTTGATAACTCGCACAAATGC
1 CTTAACCCGGTTTTGATAACTCGCACAAATGC
72891232 CTT
1 CTT
72891235 CGGGAATTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.30
Consensus pattern (32 bp):
CTTAACCCGGTTTTGATAACTCGCACAAATGC
Found at i:72892006 original size:2 final size:2
Alignment explanation
Indices: 72891999--72892028 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
72891989 ATGTGCAAAC
72891999 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72892029 GCTAGAGCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72897997 original size:45 final size:44
Alignment explanation
Indices: 72897930--72898098 Score: 182
Period size: 45 Copynumber: 3.7 Consensus size: 44
72897920 AACCCGCCCC
* *
72897930 TAAGTGAACTCGACTCAACTCAACGAGCTCGGGCTTCGCATCCA
1 TAAGTGAACTCGACTCAACTCAACGAGTTCGGGCTTCACATCCA
*
72897974 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTC-GACTCAACTCAACGAGTTCGG--G-CT--TCACATCCA
* * *
72898022 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
1 TAAGTGAACTC-GACTCAACTCAACGAGTTCGGGC-TTCACATCCA
*
72898067 TAGGTGAACTCGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGACTCAACTCAACGAGTTCGG
72898099 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 10, Indels: 19
0.78 0.07 0.14
Matches are distributed among these distances:
43 5 0.05
44 13 0.12
45 43 0.41
46 6 0.06
47 29 0.28
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
TAAGTGAACTCGACTCAACTCAACGAGTTCGGGCTTCACATCCA
Found at i:72898045 original size:92 final size:91
Alignment explanation
Indices: 72897935--72898102 Score: 275
Period size: 92 Copynumber: 1.8 Consensus size: 91
72897925 GCCCCTAAGT
* *
72897935 GAACTCGACTCAACTCAACGAGCTCGGGC-TTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTC-GACTCAACTCAAC
72897999 GAGTTCGGATGCCTAGTTACATCTCAC
65 GAGTTCGGATGCCTAGTTACATCTCAC
* *
72898026 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAGGTGAACTCGACTCAACTCAAC
1 GAACTC-GACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGACTCAACTCAAC
72898091 GAGTTCGGATGC
65 GAGTTCGGATGC
72898103 TCAACCATCC
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
91 6 0.08
92 46 0.65
93 19 0.27
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (91 bp):
GAACTCGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:72898551 original size:30 final size:30
Alignment explanation
Indices: 72898517--72898576 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
72898507 ATTTAATACG
72898517 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
72898547 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
72898577 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:72905783 original size:47 final size:47
Alignment explanation
Indices: 72905669--72905838 Score: 169
Period size: 45 Copynumber: 3.7 Consensus size: 47
72905659 GCCCCTAAGT
* * * *
72905669 GAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCC--AAGC
72905715 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC-CAAGC
* *
72905762 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
72905807 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
72905839 TCAACCATCC
Statistics
Matches: 105, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 2 0.02
45 29 0.28
46 27 0.26
47 29 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAGC
Found at i:72905838 original size:92 final size:93
Alignment explanation
Indices: 72905669--72905838 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
72905659 GCCCCTAAGT
* *
72905669 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72905734 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72905762 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72905826 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72905839 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 35 0.47
93 39 0.53
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72906290 original size:30 final size:30
Alignment explanation
Indices: 72906256--72906315 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
72906246 ATTTAATACG
72906256 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
72906286 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
72906316 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:72922006 original size:33 final size:32
Alignment explanation
Indices: 72921969--72922082 Score: 77
Period size: 33 Copynumber: 3.5 Consensus size: 32
72921959 TACCCAAATG
*
72921969 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTAC-ACTTGAAAAGGTTAGGTACACTTTGTGT
* * **
72922002 GTACATTTGGAAAGGTTAGGTTTACTTTGTGT
1 GTACACTTGAAAAGGTTAGGTACACTTTGTGT
* ** ** *
72922034 ATAC-CATATGAAAAGGAAAGGTATTCTTTTTGT
1 GTACAC-T-TGAAAAGGTTAGGTACACTTTGTGT
*
72922067 GTACCACTTGGAAAGG
1 GTA-CACTTGAAAAGG
72922083 AATGTACACC
Statistics
Matches: 62, Mismatches: 15, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
32 27 0.44
33 32 0.52
34 2 0.03
35 1 0.02
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.36
Consensus pattern (32 bp):
GTACACTTGAAAAGGTTAGGTACACTTTGTGT
Found at i:72922083 original size:33 final size:32
Alignment explanation
Indices: 72921993--72922084 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 32
72921983 GGTTATGTAC
**
72921993 ACTTTGTGTGTA-CATTTGGAAAGGTTAGGTTT
1 ACTTTGTGTGTACCA-TTGGAAAGGAAAGGTTT
* *
72922025 ACTTTGTGTATACCATATGAAAAGGAAAGGTATT
1 ACTTTGTGTGTACCAT-TGGAAAGGAAAGGT-TT
*
72922059 -CTTTTTGTGTACCACTTGGAAAGGAA
1 ACTTTGTGTGTACCA-TTGGAAAGGAA
72922085 TGTACACCTC
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
32 12 0.24
33 34 0.69
34 3 0.06
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (32 bp):
ACTTTGTGTGTACCATTGGAAAGGAAAGGTTT
Found at i:72925015 original size:23 final size:23
Alignment explanation
Indices: 72924989--72925041 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
72924979 CTGCTTTTTG
*
72924989 ATGGATTCGGTGTGATATTGGGA
1 ATGGATTCGATGTGATATTGGGA
*
72925012 ATGGATTCGATTTGATATTGGGA
1 ATGGATTCGATGTGATATTGGGA
72925035 ATGGATT
1 ATGGATT
72925042 GGTTAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.25, C:0.04, G:0.34, T:0.38
Consensus pattern (23 bp):
ATGGATTCGATGTGATATTGGGA
Found at i:72927013 original size:101 final size:101
Alignment explanation
Indices: 72926838--72927045 Score: 380
Period size: 101 Copynumber: 2.1 Consensus size: 101
72926828 TAACTGGTAC
* *
72926838 AAAAGATTTTGTATGAAGCTCATAATGGTGCAATGTCAGTTCATCCAGGTAGCAATAAAATGTAT
1 AAAAGATTTTGTATGAAGCTCATAACGATGCAATGTCAGTTCATCCAGGTAGCAATAAAATGTAT
*
72926903 AATGATTTGAAAAAGATGTATTGGTGGCTGGGAATG
66 AATGATTTGAAAAAGATGTATTGGTGGCCGGGAATG
*
72926939 AAAAGATTTTGTATGAAGCTCATAACGATGCAATGTCAGTTCATCCAGGTAGTAATAAAATGTAT
1 AAAAGATTTTGTATGAAGCTCATAACGATGCAATGTCAGTTCATCCAGGTAGCAATAAAATGTAT
72927004 AATGATTTGAAAAAGATGTATTGGTGGCCGGGAATG
66 AATGATTTGAAAAAGATGTATTGGTGGCCGGGAATG
72927040 AAAAGA
1 AAAAGA
72927046 GATATTTTTG
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 103 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (101 bp):
AAAAGATTTTGTATGAAGCTCATAACGATGCAATGTCAGTTCATCCAGGTAGCAATAAAATGTAT
AATGATTTGAAAAAGATGTATTGGTGGCCGGGAATG
Found at i:72930478 original size:39 final size:39
Alignment explanation
Indices: 72930394--72930546 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
72930384 TATGGTAACC
** * *
72930394 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
72930434 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
72930473 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72930512 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
72930547 TCGAACATTC
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 86 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:72930520 original size:78 final size:79
Alignment explanation
Indices: 72930363--72930545 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
72930353 TCGTTCAAAC
* * **
72930363 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
72930428 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** * *
72930443 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
72930507 CAATTTGCACAATT
66 CAATTTGCACAATT
72930521 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
72930546 CTCGAACATT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:72938501 original size:39 final size:39
Alignment explanation
Indices: 72938417--72938569 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
72938407 TATGGTAACC
** * *
72938417 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
72938457 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
72938496 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72938535 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
72938570 TCGAACATTC
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 86 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:72938543 original size:78 final size:79
Alignment explanation
Indices: 72938386--72938568 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
72938376 TCGTTCAAAC
* * **
72938386 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
72938451 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** * *
72938466 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
72938530 CAATTTGCACAATT
66 CAATTTGCACAATT
72938544 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
72938569 CTCGAACATT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:72944295 original size:21 final size:20
Alignment explanation
Indices: 72944256--72944297 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
72944246 AATATGCTGT
* *
72944256 AAAATGAAATTTTTTGATAG
1 AAAATGAAAATTATTGATAG
72944276 AAAATGAAAGATTATTGATAG
1 AAAATGAAA-ATTATTGATAG
72944297 A
1 A
72944298 TAAACCACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (20 bp):
AAAATGAAAATTATTGATAG
Found at i:72945030 original size:32 final size:33
Alignment explanation
Indices: 72944989--72945062 Score: 98
Period size: 32 Copynumber: 2.3 Consensus size: 33
72944979 ATGGTACAAC
*
72944989 ATGAAAAGGTTAT-GTACACTTTGTGTGTA-CAT
1 ATGAAAAGGTT-TGGTACACTTTGTGTATACCAT
* *
72945021 TTGAAAAGGTTTGGTATACTTTGTGTATACCAT
1 ATGAAAAGGTTTGGTACACTTTGTGTATACCAT
72945054 ATGAAAAGG
1 ATGAAAAGG
72945063 AAAGGTTTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
31 1 0.03
32 24 0.67
33 11 0.31
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.36
Consensus pattern (33 bp):
ATGAAAAGGTTTGGTACACTTTGTGTATACCAT
Found at i:72945074 original size:33 final size:33
Alignment explanation
Indices: 72945006--72945085 Score: 90
Period size: 33 Copynumber: 2.5 Consensus size: 33
72944996 GGTTATGTAC
* ***
72945006 ACTTTGTGTGTA-CATTTGAAAAGGTTTGGTAT
1 ACTTTGTGTGTACCATATGAAAAGGAAAGGTAT
* *
72945038 ACTTTGTGTATACCATATGAAAAGGAAAGGTTT
1 ACTTTGTGTGTACCATATGAAAAGGAAAGGTAT
*
72945071 ACTTTTTGTGTACCA
1 ACTTTGTGTGTACCA
72945086 CTTGGAAAGG
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 11 0.28
33 28 0.72
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (33 bp):
ACTTTGTGTGTACCATATGAAAAGGAAAGGTAT
Found at i:72946095 original size:13 final size:13
Alignment explanation
Indices: 72946074--72946111 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
72946064 GGCCATGGGA
72946074 GCCACACGGGCTG
1 GCCACACGGGCTG
*
72946087 GCTACACGGGCTG
1 GCCACACGGGCTG
72946100 GCCACACGGGCT
1 GCCACACGGGCT
72946112 TGTGCCCCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.16, C:0.37, G:0.37, T:0.11
Consensus pattern (13 bp):
GCCACACGGGCTG
Found at i:72952419 original size:18 final size:19
Alignment explanation
Indices: 72952396--72952431 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
72952386 AACTTGGCAC
*
72952396 CATAA-TCATTTAATTTAA
1 CATAATTCAATTAATTTAA
72952414 CATAATTCAATTAATTTA
1 CATAATTCAATTAATTTA
72952432 CTAAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (19 bp):
CATAATTCAATTAATTTAA
Found at i:72959309 original size:68 final size:70
Alignment explanation
Indices: 72959237--72959434 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
72959227 ACACCCTGTA
* * * *
72959237 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
72959299 ATAAAT
65 ATAAAT
*
72959305 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
72959370 ATAAAT
65 ATAAAT
*
72959376 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
72959435 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:72959348 original size:41 final size:41
Alignment explanation
Indices: 72959303--72959420 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72959293 TGAAAGATAA
72959303 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72959344 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72959374 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72959415 ATGTAG
1 ATGTAG
72959421 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72959360 original size:71 final size:71
Alignment explanation
Indices: 72959271--72959434 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72959261 GAGATGTATC
72959271 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72959336 AGGACA
66 AGGACA
72959342 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72959407 AGGACA
66 AGGACA
72959413 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72959435 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72966876 original size:68 final size:70
Alignment explanation
Indices: 72966804--72967001 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
72966794 ACACCCTGTA
* * * *
72966804 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
72966866 ATAAAT
65 ATAAAT
*
72966872 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
72966937 ATAAAT
65 ATAAAT
*
72966943 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
72967002 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:72966915 original size:41 final size:41
Alignment explanation
Indices: 72966870--72966987 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72966860 TGAAAGATAA
72966870 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72966911 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72966941 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72966982 ATGTAG
1 ATGTAG
72966988 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72966927 original size:71 final size:71
Alignment explanation
Indices: 72966838--72967001 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72966828 GAGATGTATC
72966838 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72966903 AGGACA
66 AGGACA
72966909 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72966974 AGGACA
66 AGGACA
72966980 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72967002 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72978221 original size:28 final size:28
Alignment explanation
Indices: 72978189--72978253 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
72978179 ATTTACTAGA
*
72978189 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
72978217 ATACCCCTATGTATGTAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
72978245 ATACCCCTA
1 ATACCCCTA
72978254 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:72978400 original size:28 final size:27
Alignment explanation
Indices: 72978359--72978448 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
72978349 AGGAAGCATC
72978359 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
72978387 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
72978414 CTGGTGGCACTGCCACAAAATATTTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
72978443 CTGGTG
1 CTGGTG
72978449 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:72978459 original size:29 final size:28
Alignment explanation
Indices: 72978369--72978459 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
72978359 CTGGTGGCTA
* * *
72978369 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
72978397 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
72978424 TGCCACAAAATATTTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
72978453 TGTCACA
1 TGCCACA
72978460 TTTTCTGTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
27 23 0.45
28 13 0.25
29 15 0.29
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:72978467 original size:55 final size:56
Alignment explanation
Indices: 72978359--72978473 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
72978349 AGGAAGCATC
* * *
72978359 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
72978414 CTGGTGGC-ACTGCCACAAAATATTTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
72978470 CTGG
1 CTGG
72978474 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:72978935 original size:19 final size:19
Alignment explanation
Indices: 72978911--72978949 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
72978901 TTTTAATTAT
* *
72978911 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
72978930 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
72978949 T
1 T
72978950 ATGATGAGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:72979565 original size:11 final size:10
Alignment explanation
Indices: 72979537--72979570 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
72979527 AGCCTATAAG
72979537 TATTCTGAAT
1 TATTCTGAAT
*
72979547 TTTTCTGAAT
1 TATTCTGAAT
72979557 ATATTCTGAAT
1 -TATTCTGAAT
72979568 TAT
1 TAT
72979571 CTATCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:72983810 original size:28 final size:27
Alignment explanation
Indices: 72983747--72983816 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
72983737 ATAGTGAGTC
72983747 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
72983774 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
72983802 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72983817 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:72983838 original size:31 final size:28
Alignment explanation
Indices: 72983747--72983844 Score: 119
Period size: 27 Copynumber: 3.4 Consensus size: 28
72983737 ATAGTGAGTC
*
72983747 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
*
72983774 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
*
72983802 CGCACACTTAGTGCTGTACAAATTTCAAAC-
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
72983832 CAGCACACTTAGT
1 C-GCACACTTAGT
72983845 ACCAATCTCA
Statistics
Matches: 64, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
27 23 0.36
28 21 0.33
29 2 0.03
30 1 0.02
31 17 0.27
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:72990354 original size:40 final size:40
Alignment explanation
Indices: 72990280--72990501 Score: 376
Period size: 40 Copynumber: 5.6 Consensus size: 40
72990270 AACCCAAGTA
* *
72990280 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
72990319 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
72990359 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
72990399 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
72990439 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
72990479 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
72990502 CATTCGAATA
Statistics
Matches: 173, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 12 0.07
40 160 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:72993107 original size:29 final size:29
Alignment explanation
Indices: 72993081--72993232 Score: 250
Period size: 29 Copynumber: 5.2 Consensus size: 29
72993071 TCGTACACCC
* * *
72993081 AGTGCCGTATTTTTCCAGCTTGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
* *
72993110 AGTGCCAAATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
72993139 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
72993168 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
72993197 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
72993226 AGTGCCA
1 AGTGCCA
72993233 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 116 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:72993134 original size:87 final size:87
Alignment explanation
Indices: 72993015--72993232 Score: 233
Period size: 87 Copynumber: 2.5 Consensus size: 87
72993005 ACTCGATTTC
** * * ** * * *
72993015 GCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATA-CCCTCCGAACTCGTACA
1 GCACACTTAGTGCCAAAT-ATTTCCAGCACGCACACTTAGTGCCATATACCTCC-AACACGCACA
* * *
72993078 CCCAGTGCCGTATTTTTCCAGCTT
64 CCCAGTGCCATATATTTCCAGCAT
** * *
72993102 GCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACACT
1 GCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACACC
*
72993167 TAGTGCCATATATTTCCAGCAT
66 CAGTGCCATATATTTCCAGCAT
* *
72993189 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 GCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCA
72993233 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
86 4 0.04
87 103 0.94
88 3 0.03
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.27
Consensus pattern (87 bp):
GCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACACC
CAGTGCCATATATTTCCAGCAT
Found at i:72999835 original size:29 final size:29
Alignment explanation
Indices: 72999802--72999961 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
72999792 CCTCCGAACT
** * * *
72999802 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
72999831 TGCACACTTAGTGCCA-ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72999859 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72999888 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72999917 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72999946 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
72999962 ATCTCGTCAC
Statistics
Matches: 123, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
28 25 0.20
29 98 0.80
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:72999892 original size:115 final size:114
Alignment explanation
Indices: 72999744--72999963 Score: 255
Period size: 115 Copynumber: 1.9 Consensus size: 114
72999734 TACTCGATTT
* * *
72999744 CGCACACTTAGTGCCACGTAATTTAAGCTCGCACACACAGTGCCATA-CCCTCCGAACTCGCACA
1 CGCACACTTAGTGCCAC-TAATTTAAGCACGCACACACAGTGCCATATACCTCC-AACACGCACA
* * **
72999808 CCCAGTGCCGTATTTTTCCAGCTTGCACACTTAGTGCCAATATTTCCAGCA
64 CCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATTTCCAGCA
* ** ** *
72999859 CGCACACTTAGTGCCA-TATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACA
1 CGCACACTTAGTGCCACTA-ATTT-AAGCACGCACACACAGTGCCATATACCTCCAACACGCACA
**
72999923 CTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAAT
64 CCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAAT
72999964 CTCGTCACCA
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
113 2 0.02
114 4 0.05
115 78 0.90
116 3 0.03
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.25
Consensus pattern (114 bp):
CGCACACTTAGTGCCACTAATTTAAGCACGCACACACAGTGCCATATACCTCCAACACGCACACC
CAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATTTCCAGCA
Found at i:73016302 original size:33 final size:32
Alignment explanation
Indices: 73016265--73016326 Score: 97
Period size: 33 Copynumber: 1.9 Consensus size: 32
73016255 AGTTTCATAG
73016265 TCTATAGAAGTCTCAGTCTATAGCTTTTCACAA
1 TCTATAGAAGTCTCAGTCTATAG-TTTTCACAA
**
73016298 TCTATAGTTGTCTCAGTCTATAGTTTTCA
1 TCTATAGAAGTCTCAGTCTATAGTTTTCA
73016327 TAGTATTAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 6 0.22
33 21 0.78
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (32 bp):
TCTATAGAAGTCTCAGTCTATAGTTTTCACAA
Found at i:73016319 original size:16 final size:16
Alignment explanation
Indices: 73016263--73016322 Score: 66
Period size: 16 Copynumber: 3.7 Consensus size: 16
73016253 AGAGTTTCAT
**
73016263 AGTCTATAGAAGTCTC
1 AGTCTATAGTTGTCTC
* *
73016279 AGTCTATAGCTTTTCAC
1 AGTCTATAG-TTGTCTC
*
73016296 AATCTATAGTTGTCTC
1 AGTCTATAGTTGTCTC
73016312 AGTCTATAGTT
1 AGTCTATAGTT
73016323 TTCATAGTAT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
16 24 0.69
17 11 0.31
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (16 bp):
AGTCTATAGTTGTCTC
Found at i:73020278 original size:28 final size:28
Alignment explanation
Indices: 73020217--73020314 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
73020207 TCACAAATTG
** * *
73020217 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
73020246 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
73020274 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
73020302 GCACTAAGTGTGC
1 GCACTAAGTGTGC
73020315 GGGCTTATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:73026911 original size:40 final size:40
Alignment explanation
Indices: 73026854--73027074 Score: 221
Period size: 40 Copynumber: 5.5 Consensus size: 40
73026844 TGAATGATAC
* *
73026854 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
* *** *
73026894 CAGGGCTAAGACCCGAAGGCATTCGGGCGAGTTGTTATAC
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* *
73026934 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
* **
73026974 CCGGGCTAAGACTCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* * * *** *
73027014 CCGGGCTAAGACCCGAAGGTATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* *
73027054 CCAGGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
73027075 ATTGTGCTTA
Statistics
Matches: 148, Mismatches: 30, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
39 2 0.01
40 142 0.96
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:73026983 original size:80 final size:80
Alignment explanation
Indices: 73026850--73027074 Score: 324
Period size: 80 Copynumber: 2.8 Consensus size: 80
73026840 CATTTGAATG
*
73026850 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCAGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
73026915 TTCGGGCGAGTTGTT
66 TTCGGGCGAGTTGTT
*
73026930 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACTCGAAGGCA
1 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
*
73026995 TTCGTGCGAGTTGTT
66 TTCGGGCGAGTTGTT
* * * * * * ** * * *
73027010 ATATCCGGGCTAAGACCCGAAGGTATTTGTGCAAGTTACCAAATCCAGGTTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
73027075 ATTGTGCTTA
Statistics
Matches: 130, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 130 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTCGGGCGAGTTGTT
Found at i:73027069 original size:120 final size:120
Alignment explanation
Indices: 73026854--73027101 Score: 268
Period size: 120 Copynumber: 2.1 Consensus size: 120
73026844 TGAATGATAC
* * *
73026854 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCAGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCAGGGCTAAGACCCGAAGGCATTCG
* *** * * * *
73026919 GGCGAGTTGTTATACCCGGGCTAAGTCCCGAAGGCATTTATGC-TAGTGATTATAT
66 GGCAAGTTACCAAACCCAGGCTAAGACCCGAAGGCAATTATGCTTA-TGATTATAT
* * * * *
73026974 CCGGGCTAAGACTCGAAGGCATTCGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGTATTT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAG-TGATTATATCAGGGCTAAGACCCGAAGGCATTC
* * * * *
73027038 GTGCAAGTTACCAAATCCAGGTTAAGACCCGAAGGCAATTGTGCTTATGGTTATAT
65 GGGCAAGTTACCAAACCCAGGCTAAGACCCGAAGGCAATTATGCTTATGATTATAT
73027094 CC-GGCTAA
1 CCGGGCTAA
73027102 ATTTCGAAGA
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
119 6 0.06
120 95 0.90
121 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCAGGGCTAAGACCCGAAGGCATTCG
GGCAAGTTACCAAACCCAGGCTAAGACCCGAAGGCAATTATGCTTATGATTATAT
Found at i:73027091 original size:80 final size:80
Alignment explanation
Indices: 73026854--73027101 Score: 252
Period size: 80 Copynumber: 3.1 Consensus size: 80
73026844 TGAATGATAC
* * ** *
73026854 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT-CAGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCA-GGCTAAGACCCGAAGGCATTC
* * *
73026918 GGGCGAGTTGTTATAC
65 GTGCGAGTGGTTATAT
* * ** * * *
73026934 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACTCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCAGGCTAAGACCCGAAGGCATTCG
*
73026999 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* * * *
73027014 CCGGGCTAAGACCCGAAGGTATTTGTGCAAGTTACCAAATCCAGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCAGGCTAAGACCCGAAGGC-ATTC
*
73027078 GTGCTTA-TGGTTATAT
65 GTGC-GAGTGGTTATAT
73027094 CC-GGCTAA
1 CCGGGCTAA
73027102 ATTTCGAAGA
Statistics
Matches: 148, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
79 6 0.04
80 137 0.93
81 5 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCAGGCTAAGACCCGAAGGCATTCG
TGCGAGTGGTTATAT
Found at i:73029459 original size:47 final size:46
Alignment explanation
Indices: 73029352--73029461 Score: 121
Period size: 47 Copynumber: 2.4 Consensus size: 46
73029342 CACTGAAGCT
* * * *
73029352 ATAGCCCAGCCATGGTCTTACATGGATCACAAATCACACTGATGCC
1 ATAGCCCAGCTATGGTCTTACATGAAGCACAAATCACACCGATGCC
* * * * * *
73029398 ATATCCCAGATATGGTTTTACATAGAAGCACATATCTCACCGATTCC
1 ATAGCCCAGCTATGGTCTTACAT-GAAGCACAAATCACACCGATGCC
73029445 ATAGCCCAGCTATGGTC
1 ATAGCCCAGCTATGGTC
73029462 ATATACGGAA
Statistics
Matches: 50, Mismatches: 13, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
46 19 0.38
47 31 0.62
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (46 bp):
ATAGCCCAGCTATGGTCTTACATGAAGCACAAATCACACCGATGCC
Found at i:73032255 original size:40 final size:40
Alignment explanation
Indices: 73032195--73032402 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
73032185 CATTGGAATG
* * *
73032195 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * *
73032235 ATATTCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* * **
73032275 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
73032315 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* ** * * * * *
73032355 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
73032395 ATATCCGG
1 ATATCCGG
73032403 TTAAATTCCG
Statistics
Matches: 137, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
39 3 0.02
40 132 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:73032401 original size:80 final size:80
Alignment explanation
Indices: 73032199--73032406 Score: 222
Period size: 80 Copynumber: 2.6 Consensus size: 80
73032189 GGAATGATAT
* * * *
73032199 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATTATATTCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAAGACCCGAAGGCATTCG
*** *
73032264 TGCGAGTTGTTATAT
66 TGCGAGTCACTATAA
* * * ** *
73032279 CCGGGCTAAGACCCAAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAAGACCCGAAGGC-ATTC
73032343 GTGCGAGTCACTATAA
65 GTGCGAGTCACTATAA
** * * *
73032359 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATTATATCC-GGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAA
73032407 ATTCCGAAGG
Statistics
Matches: 103, Mismatches: 24, Indels: 3
0.79 0.18 0.02
Matches are distributed among these distances:
79 6 0.06
80 94 0.91
81 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAAGACCCGAAGGCATTCG
TGCGAGTCACTATAA
Found at i:73037489 original size:46 final size:46
Alignment explanation
Indices: 73037371--73037550 Score: 238
Period size: 46 Copynumber: 3.9 Consensus size: 46
73037361 CAGTACTCAT
*
73037371 TTTC-TGTCAGGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
1 TTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
* * * *
73037416 TTTCCCTGTCATATTTCCAT-GTCATCTTTCAACCAAGGTCTTATTCA
1 TTT-CATGTCATGTTGCCATGGT-ATCTTTCAACCATGGTCTTATTCA
* * **
73037463 TTTTATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 TTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
*
73037509 TTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
73037551 CACATTTGAA
Statistics
Matches: 116, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
45 3 0.03
46 74 0.64
47 39 0.34
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.42
Consensus pattern (46 bp):
TTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
Found at i:73037551 original size:46 final size:46
Alignment explanation
Indices: 73037381--73037645 Score: 230
Period size: 46 Copynumber: 5.8 Consensus size: 46
73037371 TTTCTGTCAG
** * *
73037381 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCTGTCAT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT-CATATCAT
* * * ** * * *
73037428 ATTTCCAT-GTCATCTTTCAACCAAGGTCTTATTCATTTTATGTCAC
1 GTTGCCATGGT-ATCTTTCAACCATGGTCTTACACATTTCATATCAT
73037474 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAT
* *
73037520 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTGA-ATCGT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAT
* * ** * * * * * *
73037565 GATGCCATAGCGTCTTTCAGCTATGGTCTTACTCATCTGA-ATCGT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAT
* * * * *
73037610 GATGCCATAGTGTCTTTCAGCTATGGTCTTACACAT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
73037646 ATATTTCCAT
Statistics
Matches: 190, Mismatches: 26, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
45 75 0.39
46 81 0.43
47 34 0.18
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAT
Found at i:73037591 original size:45 final size:45
Alignment explanation
Indices: 73037476--73037645 Score: 205
Period size: 45 Copynumber: 3.8 Consensus size: 45
73037466 TATGTCACGT
* * * * *
73037476 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTACACATTTGA-ATCGTGA
* *
73037522 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTGAATCGTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTACACATTTGAATCGTGA
* * * * *
73037567 TGCCATAGCGTCTTTCAGCTATGGTCTTACTCATCTGAATCGTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTACACATTTGAATCGTGA
* *
73037612 TGCCATAGTGTCTTTCAGCTATGGTCTTACACAT
1 TGCCATAGTGTCTTTCAACCATGGTCTTACACAT
73037646 ATATTTCCAT
Statistics
Matches: 112, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
45 75 0.67
46 37 0.33
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (45 bp):
TGCCATAGTGTCTTTCAACCATGGTCTTACACATTTGAATCGTGA
Found at i:73048732 original size:29 final size:28
Alignment explanation
Indices: 73048698--73048800 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
73048688 TACTCAATCA
*
73048698 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
73048727 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
73048756 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
73048785 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
73048801 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:73055953 original size:29 final size:28
Alignment explanation
Indices: 73055919--73056021 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
73055909 TACTCAATCA
*
73055919 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
73055948 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
73055977 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
73056006 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
73056022 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:73058456 original size:18 final size:18
Alignment explanation
Indices: 73058433--73058468 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
73058423 AATATTATAA
73058433 CTTGCCTATACAAAACAT
1 CTTGCCTATACAAAACAT
73058451 CTTGCCTATACAAAACAT
1 CTTGCCTATACAAAACAT
73058469 GCCAATTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.06, T:0.28
Consensus pattern (18 bp):
CTTGCCTATACAAAACAT
Found at i:73066985 original size:27 final size:26
Alignment explanation
Indices: 73066937--73066996 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
73066927 GCCAAGCTGC
*
73066937 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
73066964 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
73066990 CAGATAT
1 CAGATAT
73066997 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:73067041 original size:71 final size:67
Alignment explanation
Indices: 73066964--73067105 Score: 194
Period size: 67 Copynumber: 2.1 Consensus size: 67
73066954 TCACCAGATA
* * *
73066964 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTACAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTACAGCGA
73067029 GGCTGC
62 GGCTGC
* * *
73067035 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTACAGCGAGGCT
73067100 GC
66 GC
73067102 CAGA
1 CAGA
73067106 ACGCTCCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 40 0.62
71 25 0.38
ACGTcount: A:0.31, C:0.23, G:0.28, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTACAGCGAGGCT
GC
Found at i:73067083 original size:27 final size:26
Alignment explanation
Indices: 73067035--73067086 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
73067025 GCGAGGCTGC
*
73067035 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
73067061 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
73067087 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:73069976 original size:50 final size:49
Alignment explanation
Indices: 73069797--73070041 Score: 247
Period size: 49 Copynumber: 4.9 Consensus size: 49
73069787 TCTATTGTGA
* * * *
73069797 GGTCATGTGTGTAGTACTAATTGTAGGCTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* ** * * * ** *
73069846 GGTCGCACGTGTAGTACTAAGTGTAAGCTACTATGCATACCCGATAACTTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TT
* * **
73069897 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
73069946 AGGTCACGTGTGTAGTACTAACTGCTGGCTACTACGTGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
73069996 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
73070042 GCTTTGGCTA
Statistics
Matches: 156, Mismatches: 37, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
49 78 0.50
50 42 0.27
51 36 0.23
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:73072070 original size:22 final size:26
Alignment explanation
Indices: 73072040--73072088 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 26
73072030 TACATGTGTA
73072040 TATTCTTTATATA-GT-AT-TATTAT
1 TATTCTTTATATATGTCATATATTAT
73072063 TATT-TTTATATATGTCATATATTAT
1 TATTCTTTATATATGTCATATATTAT
73072088 T
1 T
73072089 GTACTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 8 0.35
23 6 0.26
24 2 0.09
25 7 0.30
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (26 bp):
TATTCTTTATATATGTCATATATTAT
Found at i:73072296 original size:27 final size:29
Alignment explanation
Indices: 73072244--73072301 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
73072234 TTCTAAACTA
73072244 TGCCATATATATACTACTATTATATATCT
1 TGCCATATATATACTACTATTATATATCT
73072273 TGCCATATATATACTACTATTATATATCT
1 TGCCATATATATACTACTATTATATATCT
73072302 ACTTATATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.03, T:0.45
Consensus pattern (29 bp):
TGCCATATATATACTACTATTATATATCT
Found at i:73076046 original size:34 final size:34
Alignment explanation
Indices: 73076003--73076073 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
73075993 ACAAATATAT
73076003 TGTCAGTCTGATTGGGTTATGATCTGCATGGTTC
1 TGTCAGTCTGATTGGGTTATGATCTGCATGGTTC
73076037 TGTCAGTCTGATTGGGTTATGATCTGCATGGTTC
1 TGTCAGTCTGATTGGGTTATGATCTGCATGGTTC
73076071 TGT
1 TGT
73076074 TTTTCTCTGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.14, C:0.14, G:0.30, T:0.42
Consensus pattern (34 bp):
TGTCAGTCTGATTGGGTTATGATCTGCATGGTTC
Found at i:73078458 original size:43 final size:43
Alignment explanation
Indices: 73078410--73078506 Score: 131
Period size: 43 Copynumber: 2.3 Consensus size: 43
73078400 TGTGATTTTG
** * * *
73078410 TGTAAGACCATGTCTGGGACATTGGCATCAATGTGAGATTACA
1 TGTAAGACCATGTCTGGGACAGAGGAATCAATATGAGATAACA
* *
73078453 TGTAAGACCCTGTCTGGGACAGAGGAATCAATATGTGATAACA
1 TGTAAGACCATGTCTGGGACAGAGGAATCAATATGAGATAACA
73078496 TGTAAGACCAT
1 TGTAAGACCAT
73078507 ATATGAGATA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGAGGAATCAATATGAGATAACA
Found at i:73079322 original size:31 final size:31
Alignment explanation
Indices: 73079287--73079394 Score: 180
Period size: 31 Copynumber: 3.5 Consensus size: 31
73079277 CAGCATATAA
*
73079287 TGGGCCGAAGCCTTTGCATTATTCATATCAC
1 TGGGCCGAAGCCTTTTCATTATTCATATCAC
*
73079318 TGGGCCGAAGCCTTTTCATTATTCATATCTC
1 TGGGCCGAAGCCTTTTCATTATTCATATCAC
73079349 TGGGCCGAAGCCTTTTCATTATTCATATCAC
1 TGGGCCGAAGCCTTTTCATTATTCATATCAC
* *
73079380 TAGGCCAAAGCCTTT
1 TGGGCCGAAGCCTTT
73079395 ACTGTAACAA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATTATTCATATCAC
Found at i:73079696 original size:24 final size:25
Alignment explanation
Indices: 73079614--73079707 Score: 163
Period size: 25 Copynumber: 3.8 Consensus size: 25
73079604 CTCTTTTAAT
73079614 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
73079639 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
73079664 AACTAGGGCAAAGCCCTTTTCGGT-
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
73079688 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
73079708 GCACTTCCTC
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
24 18 0.27
25 48 0.73
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:73079785 original size:11 final size:11
Alignment explanation
Indices: 73079754--73079791 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
73079744 AAATGAATAC
73079754 ATCATGTGCAT
1 ATCATGTGCAT
*
73079765 ATCA--TACAT
1 ATCATGTGCAT
73079774 ATCATGTGCAT
1 ATCATGTGCAT
73079785 ATCATGT
1 ATCATGT
73079792 CAATTCATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.35
11 15 0.65
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:73079866 original size:25 final size:25
Alignment explanation
Indices: 73079838--73079885 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73079828 ATAATTAAAC
* **
73079838 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
73079863 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
73079886 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:73084368 original size:46 final size:45
Alignment explanation
Indices: 73084318--73084489 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 45
73084308 TGGTTGAGCA
*
73084318 TCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
73084364 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
73084410 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
73084456 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73084490 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 94 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:73084472 original size:92 final size:92
Alignment explanation
Indices: 73084315--73084484 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
73084305 GGATGGTTGA
* * * *
73084315 GCATCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
73084380 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
73084407 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
73084472 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73084485 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
92 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:73091865 original size:46 final size:45
Alignment explanation
Indices: 73091815--73091986 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 45
73091805 TGGTTGAGCA
73091815 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
73091861 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
73091907 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
73091953 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73091987 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 94 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:73091969 original size:92 final size:92
Alignment explanation
Indices: 73091812--73091981 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
73091802 GGATGGTTGA
* * *
73091812 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
73091877 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
73091904 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
73091969 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
73091982 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
92 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:73097727 original size:31 final size:30
Alignment explanation
Indices: 73097679--73097744 Score: 96
Period size: 31 Copynumber: 2.2 Consensus size: 30
73097669 TCAATCTCAG
* *
73097679 CATATACTGGGCTGAAGCCTTTGCATTATT
1 CATATACTAGGCCGAAGCCTTTGCATTATT
*
73097709 CATATCACTAGGCCGAAGCCTTTTCATTATT
1 CATAT-ACTAGGCCGAAGCCTTTGCATTATT
73097740 CATAT
1 CATAT
73097745 GTAACACCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 5 0.16
31 27 0.84
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (30 bp):
CATATACTAGGCCGAAGCCTTTGCATTATT
Found at i:73099083 original size:40 final size:38
Alignment explanation
Indices: 73099053--73099234 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 38
73099043 GCTACTCGTT
*
73099053 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCG
*
73099091 CACAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCG
1 --CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCG
*
73099131 CACAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCG
1 CA-AATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCG
* * *
73099169 CACAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTCACTTAG
1 --CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAAC-TCG
*
73099210 CACAAAGCCTTCGGGACTTAGCCCG
1 CA-AATGCCTTCGGGACTTAGCCCG
73099235 AACATCATTC
Statistics
Matches: 119, Mismatches: 10, Indels: 26
0.77 0.06 0.17
Matches are distributed among these distances:
38 23 0.19
39 23 0.19
40 66 0.55
41 7 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCG
Found at i:73099173 original size:78 final size:80
Alignment explanation
Indices: 73099055--73099234 Score: 251
Period size: 78 Copynumber: 2.3 Consensus size: 80
73099045 TACTCGTTCA
* *
73099055 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
*
73099119 TTTAGTAAC-TCGCAC
65 TTTAGTAACTTAGCAC
**
73099134 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
73099197 TTTAGTCACTTAGCAC
65 TTTAGTAACTTAGCAC
*
73099213 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
73099235 AACATCATTC
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 4 0.04
78 49 0.54
79 28 0.31
80 9 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
TTAGTAACTTAGCAC
Found at i:73103154 original size:78 final size:81
Alignment explanation
Indices: 73103034--73103215 Score: 257
Period size: 78 Copynumber: 2.3 Consensus size: 81
73103024 TACTCGTTCA
* *
73103034 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
73103097 ATTTAGTAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
**
73103113 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
73103176 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
73103192 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
73103216 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:73103215 original size:40 final size:40
Alignment explanation
Indices: 73103032--73103215 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
73103022 GCTACTCGTT
*
73103032 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
73103072 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
73103112 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
73103150 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
73103191 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73103216 CATCATTCGA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 21 0.16
40 69 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:73105200 original size:24 final size:25
Alignment explanation
Indices: 73105113--73105205 Score: 143
Period size: 25 Copynumber: 3.8 Consensus size: 25
73105103 TCTTTTAATC
*
73105113 ACTGGGGCAAAGCCCTTTTTGATAA
1 ACTGGGGCAAAGCCCTTTTCGATAA
*
73105138 ACTGGGGCAAAGCCCTTTTCGGTAA
1 ACTGGGGCAAAGCCCTTTTCGATAA
73105163 ACTGGGGCAAAGCCCTTTTCGAT-A
1 ACTGGGGCAAAGCCCTTTTCGATAA
* *
73105187 ATTGGGGCATAGCCCTTTT
1 ACTGGGGCAAAGCCCTTTT
73105206 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
24 18 0.29
25 45 0.71
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (25 bp):
ACTGGGGCAAAGCCCTTTTCGATAA
Found at i:73105283 original size:11 final size:11
Alignment explanation
Indices: 73105252--73105289 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
73105242 AAATGAATAC
73105252 ATCATGTGCAT
1 ATCATGTGCAT
*
73105263 ATCA--TACAT
1 ATCATGTGCAT
73105272 ATCATGTGCAT
1 ATCATGTGCAT
73105283 ATCATGT
1 ATCATGT
73105290 CAATTAATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.35
11 15 0.65
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:73105364 original size:25 final size:25
Alignment explanation
Indices: 73105336--73105383 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
73105326 ATAATTAAAC
* **
73105336 CCTAAGGGTAAAATGGTCATTTTTA
1 CCTAAGGGCAAAACAGTCATTTTTA
*
73105361 CCTAGGGGCAAAACAGTCATTTT
1 CCTAAGGGCAAAACAGTCATTTT
73105384 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (25 bp):
CCTAAGGGCAAAACAGTCATTTTTA
Found at i:73111571 original size:46 final size:49
Alignment explanation
Indices: 73111465--73111586 Score: 142
Period size: 50 Copynumber: 2.5 Consensus size: 49
73111455 TGTCTTCGAC
** * *
73111465 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATCTAAT
* * *
73111515 ATGGGCTTACATGGCTCATTCCTGTCTCTAAAGCC-ATATA-AT-TGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
*
73111561 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
73111587 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 27 0.43
47 2 0.03
48 5 0.08
50 29 0.46
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
Found at i:73122473 original size:46 final size:47
Alignment explanation
Indices: 73122423--73122700 Score: 191
Period size: 48 Copynumber: 5.8 Consensus size: 47
73122413 ATCGACCTTA
* *
73122423 AGATGTAAGCCAGTGTAAGA-CATGTCTAGGGCAT-GCATCG-GCTAT
1 AGATGT-AGTCAGTGTAAGACCATGTCTAGGGCATGGCATCGAACTAT
*
73122468 GAGATGT-GTCAGTGTAAGACCATGTCTAGGACATGGCATCAGAACGTAT
1 -AGATGTAGTCAGTGTAAGACCATGTCTAGGGCATGGCATC-GAAC-TAT
* *
73122517 AGATGTA-TCAGTGTAAGACCATGTCTGGGGCATGGCATCGACAC-AA
1 AGATGTAGTCAGTGTAAGACCATGTCTAGGGCATGGCATCGA-ACTAT
* * * * *
73122563 ATATGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCGTC-AGCCTCGAT
1 AGATGT-AG-TC-AGTGTAAGACCATGTCTAGGGCATGGCATCGA-ACT--AT
** *
73122615 -TTTGATAGTCAGTGTAAGACCATGTCT-GGGACATGGAATCG-ACTTGAT
1 AGATG-TAGTCAGTGTAAGACCATGTCTAGGG-CATGGCATCGAAC-T-AT
* * * *
73122663 GGACG-AGCCAGTGTAAGACCATGTCTAGGACATGGCAT
1 AGATGTAGTCAGTGTAAGACCATGTCTAGGGCATGGCAT
73122701 TGACATTATA
Statistics
Matches: 186, Mismatches: 26, Indels: 39
0.74 0.10 0.16
Matches are distributed among these distances:
44 11 0.06
45 13 0.07
46 17 0.09
47 31 0.17
48 47 0.25
49 32 0.17
50 28 0.15
51 5 0.03
52 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AGATGTAGTCAGTGTAAGACCATGTCTAGGGCATGGCATCGAACTAT
Found at i:73122588 original size:98 final size:96
Alignment explanation
Indices: 73122477--73122700 Score: 269
Period size: 96 Copynumber: 2.3 Consensus size: 96
73122467 TGAGATGTGT
73122477 CAGTGTAAGACCATGTCTAGGACATGGCATCAG-AACGTATAGATG-TA-TCAGTGTAAGACCAT
1 CAGTGTAAGACCATGTCTAGGACATGGCATCAGCAACG-AT-GATGATAGTCAGTGTAAGACCAT
* *
73122539 GTCTGGGGCATGGCATCGACACAAAT-ATGTGA-GAGC
64 GTCTGGGACATGGAATCG--AC--ATGATG-GACGAGC
* * ** **
73122575 TAGTGTAAGACCATGTCTAGGACATGGCGTCAGCCTCGATTTTGATAGTCAGTGTAAGACCATGT
1 CAGTGTAAGACCATGTCTAGGACATGGCATCAGCAACGATGATGATAGTCAGTGTAAGACCATGT
*
73122640 CTGGGACATGGAATCGACTTGATGGACGAGC
66 CTGGGACATGGAATCGACATGATGGACGAGC
73122671 CAGTGTAAGACCATGTCTAGGACATGGCAT
1 CAGTGTAAGACCATGTCTAGGACATGGCAT
73122701 TGACATTATA
Statistics
Matches: 110, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
95 3 0.03
96 35 0.32
97 4 0.04
98 35 0.32
99 33 0.30
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (96 bp):
CAGTGTAAGACCATGTCTAGGACATGGCATCAGCAACGATGATGATAGTCAGTGTAAGACCATGT
CTGGGACATGGAATCGACATGATGGACGAGC
Found at i:73123877 original size:21 final size:21
Alignment explanation
Indices: 73123853--73123913 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
73123843 GTTATAATGA
73123853 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
* *
73123874 CCACACGGGGGTGTTACCCTT
1 CCACACGGGCGTGTTGCCCTT
*
73123895 CCACACGGCCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
73123914 ATTTCAAGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
20 5 0.14
21 30 0.86
ACGTcount: A:0.11, C:0.39, G:0.28, T:0.21
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:73126140 original size:36 final size:36
Alignment explanation
Indices: 73126100--73126171 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
73126090 ATTAAGAGAA
73126100 TGTTTTAAACTAAGACTAATTATCTAATTAACTAAG
1 TGTTTTAAACTAAGACTAATTATCTAATTAACTAAG
*
73126136 TGTTTTAAACTAAGATTAATTATCTAATTAACTAAG
1 TGTTTTAAACTAAGACTAATTATCTAATTAACTAAG
73126172 ATTACGACAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (36 bp):
TGTTTTAAACTAAGACTAATTATCTAATTAACTAAG
Found at i:73130509 original size:19 final size:21
Alignment explanation
Indices: 73130485--73130526 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
73130475 AATCATAACA
73130485 AATAACA-AAT-ATAATGAAG
1 AATAACAGAATAATAATGAAG
73130504 AATAACAGTAATAATAATGAAG
1 AATAACAG-AATAATAATGAAG
73130526 A
1 A
73130527 CTAATAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
21 3 0.15
22 10 0.50
ACGTcount: A:0.62, C:0.05, G:0.12, T:0.21
Consensus pattern (21 bp):
AATAACAGAATAATAATGAAG
Found at i:73134589 original size:27 final size:28
Alignment explanation
Indices: 73134532--73134601 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
73134522 AAATTTGTAC
**
73134532 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
73134560 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
73134587 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73134602 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:73134610 original size:27 final size:27
Alignment explanation
Indices: 73134532--73134613 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
73134522 AAATTTGTAC
* *
73134532 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
73134560 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
73134587 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
73134614 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:73142517 original size:27 final size:28
Alignment explanation
Indices: 73142460--73142529 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
73142450 AAATTTGTAC
**
73142460 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
73142488 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
73142515 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73142530 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:73142538 original size:27 final size:27
Alignment explanation
Indices: 73142460--73142541 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
73142450 AAATTTGTAC
* *
73142460 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
73142488 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
73142515 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
73142542 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:73144963 original size:27 final size:27
Alignment explanation
Indices: 73144928--73144981 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
73144918 AATCATACAT
*
73144928 AGTACGAGGAGTAGGATCTTGATTTAC
1 AGTACGAGGAGTAGGATCCTGATTTAC
73144955 AGTACGAGGAGTAGGATCCTGATTTAC
1 AGTACGAGGAGTAGGATCCTGATTTAC
73144982 TGGATTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.28
Consensus pattern (27 bp):
AGTACGAGGAGTAGGATCCTGATTTAC
Found at i:73150365 original size:30 final size:30
Alignment explanation
Indices: 73150331--73150415 Score: 134
Period size: 30 Copynumber: 2.8 Consensus size: 30
73150321 TGATTTTTAG
73150331 GTCTAAGGGTAAAATAGTCATTTTGTGAAA
1 GTCTAAGGGTAAAATAGTCATTTTGTGAAA
73150361 GTCTAAGGGTAAAATAGTCATTTTGTGAAA
1 GTCTAAGGGTAAAATAGTCATTTTGTGAAA
* * * *
73150391 GTTTAAGGGCATAATGGTCATTTTG
1 GTCTAAGGGTAAAATAGTCATTTTG
73150416 CCCAAATCAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.33, C:0.07, G:0.25, T:0.35
Consensus pattern (30 bp):
GTCTAAGGGTAAAATAGTCATTTTGTGAAA
Found at i:73150912 original size:44 final size:48
Alignment explanation
Indices: 73150847--73151018 Score: 160
Period size: 48 Copynumber: 3.6 Consensus size: 48
73150837 GATGTAAGCC
*
73150847 AGTGTAAG-GCATGTCTAGGACAT-GCATCGGCTAC-GA-A-ATGTGTT
1 AGTGTAAGAGCATGTCTAGGACATGGCATCGGC-ACAGATAGAGGTGTT
* * *
73150891 -GTGTAAGAGCATGTCTGGGACATGGCATCGACACATATAGAGGTGTT
1 AGTGTAAGAGCATGTCTAGGACATGGCATCGGCACAGATAGAGGTGTT
* * * *
73150938 AGTGTAAGACCATGTCTAGGACATGGCATCGGCACAAATATGTGAGAT-CT
1 AGTGTAAGAGCATGTCTAGGACATGGCATCGGCACAGATA---GAGGTGTT
* * *
73150988 AGTGTAAGACCATGTTTGGGACATGGCATCG
1 AGTGTAAGAGCATGTCTAGGACATGGCATCG
73151019 ACTTAATGGA
Statistics
Matches: 107, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
43 7 0.07
44 16 0.15
45 8 0.07
46 1 0.01
47 6 0.06
48 35 0.33
50 30 0.28
51 4 0.04
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (48 bp):
AGTGTAAGAGCATGTCTAGGACATGGCATCGGCACAGATAGAGGTGTT
Found at i:73150952 original size:48 final size:48
Alignment explanation
Indices: 73150891--73151065 Score: 174
Period size: 50 Copynumber: 3.6 Consensus size: 48
73150881 GAAATGTGTT
* * *
73150891 GTGTAAGAGCATGTCTGGGACATGGCATCGACACATATAGAGGTGTTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACAAATATAGAGGTGCTA
* * *
73150939 GTGTAAGACCATGTCTAGGACATGGCATCGGCACAAATATGTGAGAT-CTA
1 GTGTAAGACCATGTCTGGGACATGGCATC-G-ACAAATAT-AGAGGTGCTA
* ** * * ** *
73150989 GTGTAAGACCATGTTTGGGACATGGCATCGACTTA-ATGGATGAACCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACAAATATAGAGGTGCTA
*
73151036 GTGTAAAACCATGTCTGGGACATGGCATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
73151066 CCATTATACC
Statistics
Matches: 106, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
46 2 0.02
47 32 0.30
48 30 0.28
49 2 0.02
50 36 0.34
51 4 0.04
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.25
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACAAATATAGAGGTGCTA
Found at i:73151002 original size:50 final size:48
Alignment explanation
Indices: 73150891--73151065 Score: 169
Period size: 47 Copynumber: 3.6 Consensus size: 48
73150881 GAAATGTGTT
* * * * *
73150891 GTGTAAGAGCATGTCTGGGACATGGCATC-GACACATAT-AGAGGTGTTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGACA-AAATGTGAGAT-CTA
*
73150939 GTGTAAGACCATGTCTAGGACATGGCATCGGCACAAATATGTGAGATCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGG-ACAAA-ATGTGAGATCTA
* ** * *
73150989 GTGTAAGACCATGTTTGGGACATGGCATC-GACTTAATG-GATGAACCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGACAAAATGTGA-GATCTA
*
73151036 GTGTAAAACCATGTCTGGGACATGGCATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
73151066 CCATTATACC
Statistics
Matches: 107, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
46 2 0.02
47 34 0.32
48 30 0.28
49 3 0.03
50 34 0.32
51 4 0.04
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.25
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGACAAAATGTGAGATCTA
Found at i:73151008 original size:98 final size:91
Alignment explanation
Indices: 73150847--73151020 Score: 233
Period size: 98 Copynumber: 1.8 Consensus size: 91
73150837 GATGTAAGCC
* * *
73150847 AGTGTAAGGCATGTCTAGGACATGCATCGGCTACGAAATGTGTTGTGTAAGAGCATGTCTGGGAC
1 AGTGTAAGCCATGTCTAGGACATGCATCGGCTACAAAATGTGTTGTGTAAGACCATGTCTGGGAC
73150912 ATGGCATCGACACATATAGAGGTGTT
66 ATGGCATCGACACATATAGAGGTGTT
73150938 AGTGTAAGACCATGTCTAGGACATGGCATCGGC-ACAAATATGTGAGATCTAGTGTAAGACCATG
1 AGTGTAAG-CCATGTCTAGGACAT-GCATCGGCTACAAA-ATGT--G-T-T-GTGTAAGACCATG
*
73151002 TTTGGGACATGGCATCGAC
58 TCTGGGACATGGCATCGAC
73151021 TTAATGGATG
Statistics
Matches: 71, Mismatches: 4, Indels: 9
0.85 0.05 0.11
Matches are distributed among these distances:
91 8 0.11
92 18 0.25
93 12 0.17
95 1 0.01
96 1 0.01
97 1 0.01
98 30 0.42
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (91 bp):
AGTGTAAGCCATGTCTAGGACATGCATCGGCTACAAAATGTGTTGTGTAAGACCATGTCTGGGAC
ATGGCATCGACACATATAGAGGTGTT
Done.