Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 244 of 770
Found at i:73153547 original size:49 final size:49
Alignment explanation
Indices: 73153315--73153552 Score: 280
Period size: 49 Copynumber: 4.8 Consensus size: 49
73153305 TGAGGTCGCA
* * * * *
73153315 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* * * **
73153366 TATGTAGTACTCAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
*
73153416 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATAATCGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAATTGGTCACG
* * *
73153465 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
73153514 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
73153553 GCTTTGGCTA
Statistics
Matches: 161, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
49 88 0.55
50 42 0.26
51 31 0.19
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:73156364 original size:77 final size:75
Alignment explanation
Indices: 73156246--73156389 Score: 168
Period size: 77 Copynumber: 1.9 Consensus size: 75
73156236 ATAAGTACCT
* * *
73156246 ATATCATGGCCCGAAGCCAAATCAAGGTAACTTATCTCTGAAGTACTGATATCATGGCCTGAAGC
1 ATATCATGGCCCGAAGCCAAATCAAGATAACTTATCTCTGAAATACT-ATATCATGGCCCGAAGC
73156311 CAAATTAGCCG
65 CAAATTAGCCG
* **
73156322 ATATGCATGGCTCGAAGCCAAATC-AGTATAACTTCCA-C-CTGAAATGGTATATCATGGCCCGA
1 ATAT-CATGGCCCGAAGCCAAATCAAG-ATAACTT--ATCTCTGAAATACTATATCATGGCCCGA
73156384 AGCCAA
62 AGCCAA
73156390 CTCAATGTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
76 25 0.43
77 31 0.53
78 1 0.02
79 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.23
Consensus pattern (75 bp):
ATATCATGGCCCGAAGCCAAATCAAGATAACTTATCTCTGAAATACTATATCATGGCCCGAAGCC
AAATTAGCCG
Found at i:73158218 original size:27 final size:27
Alignment explanation
Indices: 73158180--73158233 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
73158170 CAAATCAACC
73158180 CCGTGAATTTGTTTCTTGCTAAGCTTA
1 CCGTGAATTTGTTTCTTGCTAAGCTTA
73158207 CCGTGAATTTGTTTCTTGCTAAGCTTA
1 CCGTGAATTTGTTTCTTGCTAAGCTTA
73158234 GTCCAATACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (27 bp):
CCGTGAATTTGTTTCTTGCTAAGCTTA
Found at i:73162190 original size:40 final size:40
Alignment explanation
Indices: 73162128--73162218 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 40
73162118 TATGTTCGGT
* *
73162128 ACTAAGTGTTCGATTTGAAATAGCGCCGGCAATAAATA-GC
1 ACTAAGTGTGCGAATTGAAATAGCGCCGGCAAT-AATAGGC
* ** * *
73162168 ACTAAGTGTGCGAATTGGAATAGCTTCGGCTATATTAGGC
1 ACTAAGTGTGCGAATTGAAATAGCGCCGGCAATAATAGGC
73162208 ACTAAGTGTGC
1 ACTAAGTGTGC
73162219 AATAACAAGA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.07
40 40 0.93
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (40 bp):
ACTAAGTGTGCGAATTGAAATAGCGCCGGCAATAATAGGC
Found at i:73168556 original size:40 final size:40
Alignment explanation
Indices: 73168497--73168638 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
73168487 AAATTGAATG
* * *
73168497 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
73168537 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
73168577 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
73168617 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
73168639 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:73168639 original size:40 final size:39
Alignment explanation
Indices: 73168536--73168664 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
73168526 TGCTGGAAAT
* * *
73168536 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
73168576 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
73168616 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
73168656 TATATCCGG
1 TATATCCGG
73168665 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:73169157 original size:61 final size:62
Alignment explanation
Indices: 73169033--73169157 Score: 225
Period size: 61 Copynumber: 2.0 Consensus size: 62
73169023 TCGGATTCGG
73169033 GATCAATAAAGTCGAAGTCATCCACACTATCCACGCCTCTATTTTGGTATAAATTTTGGTTGAA
1 GATCAATAAAGTCGAAGTCATCCACACTAT-C-CGCCTCTATTTTGGTATAAATTTTGGTTGAA
73169097 GATCAATAAAGTCGAAGTCATCCACACTAT-CGCCTCTATTTTGGTATAAATTTTGGTTGAA
1 GATCAATAAAGTCGAAGTCATCCACACTATCCGCCTCTATTTTGGTATAAATTTTGGTTGAA
73169158 CTTTGAAATG
Statistics
Matches: 61, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
61 31 0.51
64 30 0.49
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (62 bp):
GATCAATAAAGTCGAAGTCATCCACACTATCCGCCTCTATTTTGGTATAAATTTTGGTTGAA
Found at i:73173803 original size:24 final size:24
Alignment explanation
Indices: 73173776--73173957 Score: 303
Period size: 24 Copynumber: 7.6 Consensus size: 24
73173766 CTTATTATGT
* * *
73173776 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
73173800 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
73173824 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
73173848 TCGCACACATAGTGCCATAGT-AA
1 TCGCACACATAGTGCCATAGTAAA
*
73173871 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
73173895 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
73173919 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
73173943 TCGCACACATAGTGC
1 TCGCACACATAGTGC
73173958 ATTTGAGATA
Statistics
Matches: 152, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
23 23 0.15
24 129 0.85
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:73173810 original size:48 final size:47
Alignment explanation
Indices: 73173754--73173957 Score: 275
Period size: 48 Copynumber: 4.3 Consensus size: 47
73173744 ACCGAATGTG
* ** * * *
73173754 GCACACATAGTGCTTATTATGTTCGCACACATAGAGCTATAGCAAATC
1 GCACACATAGTGCTTAGTA-AATCGCACACATAGTGCCATAGTAAATC
73173802 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATCGCACACATAGTGCCATAGTAAATC
* *
73173850 GCACACATAGTGCCATAGT-AATCGCACACATAGTGCCATAGTGAATC
1 GCACACATAGTG-CTTAGTAAATCGCACACATAGTGCCATAGTAAATC
* *
73173897 GCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTGAATC
1 GCACACATAGTG-CTTAGTAAATCGCACACATAGTGCCATAGTAAATC
73173945 GCACACATAGTGC
1 GCACACATAGTGC
73173958 ATTTGAGATA
Statistics
Matches: 145, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
47 47 0.32
48 93 0.64
49 5 0.03
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.23
Consensus pattern (47 bp):
GCACACATAGTGCTTAGTAAATCGCACACATAGTGCCATAGTAAATC
Found at i:73173918 original size:95 final size:95
Alignment explanation
Indices: 73173776--73173957 Score: 310
Period size: 95 Copynumber: 1.9 Consensus size: 95
73173766 CTTATTATGT
* *
73173776 TCGCACACATAGAGCTATAGCAAATCGCACACATAGTGCTATAGTAAATCGCACACATAGTGCCA
1 TCGCACACATAGAGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
73173841 TAGTAAATCGCACACATAGTGCCATAGTAA
66 TAGTAAATCGCACACATAGTGCCATAGTAA
* **
73173871 TCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
1 TCGCACACATAGAGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
*
73173936 TAGTGAATCGCACACATAGTGC
66 TAGTAAATCGCACACATAGTGC
73173958 ATTTGAGATA
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 81 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (95 bp):
TCGCACACATAGAGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
TAGTAAATCGCACACATAGTGCCATAGTAA
Found at i:73181515 original size:24 final size:24
Alignment explanation
Indices: 73181488--73181694 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
73181478 CTTATTATGT
* * *
73181488 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
73181512 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
73181536 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
73181560 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
73181584 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
73181608 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
73181632 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
73181656 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
73181680 TCGCACACATAGTGC
1 TCGCACACATAGTGC
73181695 ATTTGAGATA
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:73184935 original size:40 final size:40
Alignment explanation
Indices: 73184876--73185093 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
73184866 CGGATGATAA
* * *
73184876 CCGGGCTAACTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
73184916 CCGGGCTAAGTGCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73184956 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
73184996 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73185036 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
73185076 -CTGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73185094 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 18 0.11
40 141 0.88
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73190437 original size:16 final size:16
Alignment explanation
Indices: 73190416--73190463 Score: 96
Period size: 16 Copynumber: 3.0 Consensus size: 16
73190406 GGCCGAATGT
73190416 AAGAAAGAAAAAGAAG
1 AAGAAAGAAAAAGAAG
73190432 AAGAAAGAAAAAGAAG
1 AAGAAAGAAAAAGAAG
73190448 AAGAAAGAAAAAGAAG
1 AAGAAAGAAAAAGAAG
73190464 CCATTTTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (16 bp):
AAGAAAGAAAAAGAAG
Found at i:73192046 original size:46 final size:44
Alignment explanation
Indices: 73191921--73192046 Score: 112
Period size: 46 Copynumber: 2.8 Consensus size: 44
73191911 TTGTTGATGC
* * * *
73191921 CATGTCCCAGACGTGGTCTTACACTAACACATCG-CTTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTGAGCCAATG
* * * *
73191966 CATGTCTCAGACATGTCTTTCACTGGC-TTACGTCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCACT-CGTCT-GA-GCCAATG
*
73192012 CATGTCCCAAACATGTCTTACACTAGCACTCGTCT
1 CATGTCCCAGACATGTCTTACACTAGCACTCGTCT
73192047 TTATGCTGAT
Statistics
Matches: 63, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
42 1 0.02
43 2 0.03
44 12 0.19
45 13 0.21
46 34 0.54
47 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCGTCTGAGCCAATG
Found at i:73194241 original size:42 final size:42
Alignment explanation
Indices: 73194139--73194294 Score: 154
Period size: 42 Copynumber: 3.7 Consensus size: 42
73194129 TGTGTTATCG
* * * * *
73194139 TGTAAGACCACGTCTGGGACAATGGCATGGATTTGTGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCAT-CATATATGATTT-CA
* *
73194183 TGTAAGACCATGTCTGGGACATTGGCATCATATATAATTTCA
1 TGTAAGACCACGTCTGGGACATTGGCATCATATATGATTTCA
* * **
73194225 TGTAAGACC-CTGTCTGGG-CAGTGGCATCGATATTTGATCACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATC-ATATATGATTTCA
*
73194267 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
73194295 TGTACAAGCT
Statistics
Matches: 93, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
41 9 0.10
42 42 0.45
43 16 0.17
44 26 0.28
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCATATATGATTTCA
Found at i:73194283 original size:84 final size:86
Alignment explanation
Indices: 73194139--73194294 Score: 212
Period size: 84 Copynumber: 1.8 Consensus size: 86
73194129 TGTGTTATCG
* * * *
73194139 TGTAAGACCACGTCTGGGACAATGGCATGGATTTGTGATTTACGTGTAAGACCATGTCTGGGACA
1 TGTAAGACCACGTCTGGGACAATGGCATCGATTTGTGATTCACATGTAAGACCACGTCTGGGACA
73194204 TTGGCATCATATATAATTTCA
66 TTGGCATCATATATAATTTCA
*
73194225 TGTAAGACC-CTGTCTGGG-CAGTGGCATCGATATT-TGA-TCACATGTAAGACCACGTCTGGGA
1 TGTAAGACCAC-GTCTGGGACAATGGCATCGAT-TTGTGATTCACATGTAAGACCACGTCTGGGA
*
73194286 CGTTGGCAT
64 CATTGGCAT
73194295 TGTACAAGCT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
84 29 0.47
85 15 0.24
86 18 0.29
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (86 bp):
TGTAAGACCACGTCTGGGACAATGGCATCGATTTGTGATTCACATGTAAGACCACGTCTGGGACA
TTGGCATCATATATAATTTCA
Found at i:73194485 original size:23 final size:23
Alignment explanation
Indices: 73194459--73194502 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
73194449 ACCATATGTG
73194459 AAATATATA-ACAATGAATGATAC
1 AAATATATATA-AATGAATGATAC
*
73194482 AAATGTATATAAATGAATGAT
1 AAATATATATAAATGAATGAT
73194503 GTGTTATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.55, C:0.05, G:0.11, T:0.30
Consensus pattern (23 bp):
AAATATATATAAATGAATGATAC
Found at i:73200117 original size:15 final size:16
Alignment explanation
Indices: 73200094--73200141 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 16
73200084 TAGTATCGTA
73200094 TCTTGGGTTTCTTTAT
1 TCTTGGGTTTCTTTAT
*
73200110 TC-TGGGTTTCTCTA-
1 TCTTGGGTTTCTTTAT
*
73200124 TCTTGGATTTCTTTAT
1 TCTTGGGTTTCTTTAT
73200140 TC
1 TC
73200142 GATTTCCTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.07
15 21 0.78
16 4 0.15
ACGTcount: A:0.08, C:0.17, G:0.17, T:0.58
Consensus pattern (16 bp):
TCTTGGGTTTCTTTAT
Found at i:73202620 original size:46 final size:46
Alignment explanation
Indices: 73202567--73202742 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
73202557 TATTTGGGCA
**
73202567 TCCGAACTTTTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
* * * *
73202613 TCCGAACTCGTTGAGTTGGGTCCAAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---G
* *
73202658 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
* **
73202706 CCCGAGGTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73202743 GCAGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
45 3 0.03
46 60 0.56
47 26 0.24
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
Found at i:73202676 original size:93 final size:93
Alignment explanation
Indices: 73202563--73202734 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
73202553 AGGATATTTG
** * *
73202563 GGCATCCGAACTTTTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
73202628 TTGGGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* **
73202656 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGGTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
73202721 TTGAGTCCGAGTTC
66 TTGAGTCCAAGTTC
73202735 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:73217957 original size:40 final size:40
Alignment explanation
Indices: 73217902--73218078 Score: 295
Period size: 40 Copynumber: 4.5 Consensus size: 40
73217892 CGGATGATAA
73217902 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
73217942 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
73217982 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
73218022 CCGGGCTAGGACCCGAAGGCATTTGTCCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
73218062 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
73218079 ATACTTGGGT
Statistics
Matches: 130, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 117 0.90
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:73218347 original size:22 final size:22
Alignment explanation
Indices: 73218305--73218348 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
73218295 AAAATGTGCA
* *
73218305 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
73218327 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
73218349 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:73221567 original size:40 final size:39
Alignment explanation
Indices: 73221503--73221679 Score: 142
Period size: 40 Copynumber: 4.4 Consensus size: 39
73221493 CGAATGGTGT
* * *
73221503 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATC
1 CGGGC-AATTCCCGAAGGCATTTGTGC-AAGTTACTAAATC
* * * *
73221544 CGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
1 CGGGCAATTCCCGAAGGCATTTGTGCAAGTTACTAAATC
* * * * *
73221583 CGGGTTAAGTCCTGAAGGCATTCGTGCGAGTTACTAAATC
1 CGGG-CAATTCCCGAAGGCATTTGTGCAAGTTACTAAATC
* * *
73221623 CGGGCTAATTCCTGAAGGCAATTGTGCGAA-TCACTATAA-C
1 CGGGC-AATTCCCGAAGGCATTTGTGC-AAGTTACTA-AATC
73221663 CGGGCAATGTCCCGAAG
1 CGGGCAAT-TCCCGAAG
73221680 ACAATCAGCG
Statistics
Matches: 110, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
39 15 0.14
40 88 0.80
41 7 0.06
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (39 bp):
CGGGCAATTCCCGAAGGCATTTGTGCAAGTTACTAAATC
Found at i:73221641 original size:80 final size:80
Alignment explanation
Indices: 73221503--73221679 Score: 205
Period size: 80 Copynumber: 2.2 Consensus size: 80
73221493 CGAATGGTGT
* * * *
73221503 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGTCAATTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGCAATTCCCGAAGGCAATTGT
73221568 GCGAGTTACCAAAAC
66 GCGAGTTACCAAAAC
* * * * *
73221583 CGGGTTAAGTCCTGAAGGCATTCGTGC-GAGTTACTAAATCCGGGCTAATTCCTGAAGGCAATTG
1 CGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGC-AATTCCCGAAGGCAATTG
* * * *
73221647 TGCGAATCACTATAAC
65 TGCGAGTTACCAAAAC
73221663 CGGGC-AATGTCCCGAAG
1 CGGGCTAA-GTCCCGAAG
73221680 ACAATCAGCG
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
79 17 0.21
80 63 0.79
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGCAATTCCCGAAGGCAATTGT
GCGAGTTACCAAAAC
Found at i:73229441 original size:40 final size:40
Alignment explanation
Indices: 73229386--73229509 Score: 221
Period size: 40 Copynumber: 3.1 Consensus size: 40
73229376 CGGATGATAA
73229386 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
73229426 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
73229466 CCGGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
73229506 CCGG
1 CCGG
73229510 ATAAATCCCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.20, C:0.23, G:0.32, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:73229791 original size:22 final size:22
Alignment explanation
Indices: 73229749--73229792 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
73229739 AAAATGTGCA
* *
73229749 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
73229771 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
73229793 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:73232771 original size:18 final size:17
Alignment explanation
Indices: 73232732--73232778 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
73232722 ACGATTCTTC
*
73232732 AAAAAT-AAATAGAAAT
1 AAAAATAAAATAAAAAT
*
73232748 AGAAATAAAAGTAAAAAT
1 AAAAATAAAA-TAAAAAT
*
73232766 AAAAATAATATAA
1 AAAAATAAAATAA
73232779 GTTAAAAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 5 0.20
17 6 0.24
18 14 0.56
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (17 bp):
AAAAATAAAATAAAAAT
Found at i:73237759 original size:39 final size:39
Alignment explanation
Indices: 73237716--73237854 Score: 163
Period size: 40 Copynumber: 3.5 Consensus size: 39
73237706 AGACTAGGAT
*
73237716 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGCTAAGTC
* * *
73237755 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGCTAAGTC
* **
73237795 CCGAAGGCATTCGTGCGAGTCACTATAACCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCGGGCTAAGTC
* *
73237835 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
73237855 CATTATATCC
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 33 0.39
40 50 0.59
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGCTAAGTC
Found at i:73237855 original size:40 final size:40
Alignment explanation
Indices: 73237716--73237880 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
73237706 AGACTAGGAT
* * * *
73237716 CCGAAGGCATTCGTGCGAGTTAATA-AATCCGGGCTAAG-C
1 CCGAAGGCATTTGTGCGAGTCACTATAA-CCGGGTTAAGTC
* *
73237755 CCGAAGGCATTTGTGCAAGTTACTA-AACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTCACTATAA-CCGGGTTAAGTC
* *
73237795 CCGAAGGCATTCGTGCGAGTCACTATAACCGGGCTT-CGTC
1 CCGAAGGCATTTGTGCGAGTCACTATAACCGGG-TTAAGTC
* * * * *
73237835 CCGAAGGCATTTGAGCGAGTCATTATATCC-GGTTAAATT
1 CCGAAGGCATTTGTGCGAGTCACTATAACCGGGTTAAGTC
73237874 CCGAAGG
1 CCGAAGG
73237881 TACGTGATTC
Statistics
Matches: 106, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
38 2 0.02
39 43 0.41
40 57 0.54
41 4 0.04
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTCACTATAACCGGGTTAAGTC
Found at i:73237869 original size:79 final size:79
Alignment explanation
Indices: 73237716--73237880 Score: 190
Period size: 79 Copynumber: 2.1 Consensus size: 79
73237706 AGACTAGGAT
* * *
73237716 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAA
1 CCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAA
*
73237781 ACCCGGGTTAAGTC
66 ACCCGGGTTAAATC
* ** * *
73237795 CCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 CCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACT
* * *
73237859 ATATCC-GGTTAAATT
64 AAACCCGGGTTAAATC
73237874 CCGAAGG
1 CCGAAGG
73237881 TACGTGATTC
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
79 45 0.62
80 27 0.38
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAA
ACCCGGGTTAAATC
Found at i:73242356 original size:13 final size:13
Alignment explanation
Indices: 73242338--73242378 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
73242328 GCTCGACAGG
73242338 GACACGCTCGTGT
1 GACACGCTCGTGT
73242351 GACACGCTCGTGT
1 GACACGCTCGTGT
*
73242364 GACACGCCCGTGT
1 GACACGCTCGTGT
73242377 GA
1 GA
73242379 GGTGGCTTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.20
Consensus pattern (13 bp):
GACACGCTCGTGT
Found at i:73245943 original size:15 final size:15
Alignment explanation
Indices: 73245923--73245952 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
73245913 CTATCCCCTT
73245923 CTCCTCCTCCCTGAC
1 CTCCTCCTCCCTGAC
73245938 CTCCTCCTCCCTGAC
1 CTCCTCCTCCCTGAC
73245953 TCACAGTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.60, G:0.07, T:0.27
Consensus pattern (15 bp):
CTCCTCCTCCCTGAC
Found at i:73250354 original size:40 final size:40
Alignment explanation
Indices: 73250277--73250494 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
73250267 AAACCAAGTA
* *
73250277 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
73250316 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73250356 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73250396 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
73250436 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
73250476 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73250495 TTATCATCCA
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 15 0.09
40 153 0.91
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73256596 original size:43 final size:42
Alignment explanation
Indices: 73256539--73256670 Score: 144
Period size: 43 Copynumber: 3.1 Consensus size: 42
73256529 ATTGCCAACA
*
73256539 TCCCAAAC-GTGGTCTTACATGTAATCAAATATCGATGCCACTG
1 TCCCAAACAG-GGTCTTACACGTAATCAAATATCGATGCCA-TG
* *
73256582 TCCCAAATAGGGTCTTACACGAAATCAAATA-CGATGCCGATG
1 TCCCAAACAGGGTCTTACACGTAATCAAATATCGATGCC-ATG
* *
73256624 TCCCAAACATGGTCTTACACGTAAATCATAA-GTCGATGCCAATG
1 TCCCAAACAGGGTCTTACACGT-AATCA-AATATCGATGCC-ATG
73256668 TCC
1 TCC
73256671 TAGATGTGGT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
42 28 0.37
43 32 0.42
44 16 0.21
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
TCCCAAACAGGGTCTTACACGTAATCAAATATCGATGCCATG
Found at i:73256630 original size:42 final size:41
Alignment explanation
Indices: 73256549--73256689 Score: 142
Period size: 42 Copynumber: 3.3 Consensus size: 41
73256539 TCCCAAACGT
* *
73256549 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAATAG
1 GGTCTTACACGAAATCAAATA-CGATGCCA-TGTCCCAAATAG
* *
73256592 GGTCTTACACGAAATCAAATACGATGCCGATGTCCCAAACAT
1 GGTCTTACACGAAATCAAATACGATGCC-ATGTCCCAAATAG
* *
73256634 GGTCTTACACGTAAATCATAAGT-CGATGCCAATGTCCTAGAT-G
1 GGTCTTACACG-AAATCA-AA-TACGATGCC-ATGTCCCAAATAG
73256677 TGGTCTTACACGA
1 -GGTCTTACACGA
73256690 TAACACATAT
Statistics
Matches: 84, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
42 28 0.33
43 27 0.32
44 28 0.33
45 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.26
Consensus pattern (41 bp):
GGTCTTACACGAAATCAAATACGATGCCATGTCCCAAATAG
Found at i:73256681 original size:44 final size:42
Alignment explanation
Indices: 73256539--73256688 Score: 153
Period size: 44 Copynumber: 3.5 Consensus size: 42
73256529 ATTGCCAACA
* * *
73256539 TCCCAAACGTGGTCTTACATGT-AATCAAATATCGATGCCACTG
1 TCCCAAATGTGGTCTTACACGTAAATC-AA-ATCGATGCCAATG
*
73256582 TCCCAAATAG-GGTCTTACACG-AAATCAAATACGATGCCGATG
1 TCCCAAAT-GTGGTCTTACACGTAAATCAAAT-CGATGCCAATG
**
73256624 TCCCAAACATGGTCTTACACGTAAATCATAAGTCGATGCCAATG
1 TCCCAAATGTGGTCTTACACGTAAATCA-AA-TCGATGCCAATG
* *
73256668 TCCTAGATGTGGTCTTACACG
1 TCCCAAATGTGGTCTTACACG
73256689 ATAACACATA
Statistics
Matches: 89, Mismatches: 11, Indels: 13
0.79 0.10 0.12
Matches are distributed among these distances:
41 2 0.02
42 29 0.33
43 27 0.30
44 30 0.34
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (42 bp):
TCCCAAATGTGGTCTTACACGTAAATCAAATCGATGCCAATG
Found at i:73257128 original size:9 final size:8
Alignment explanation
Indices: 73257097--73257130 Score: 59
Period size: 8 Copynumber: 4.1 Consensus size: 8
73257087 AGCCTTTAAT
73257097 TCACAAAA
1 TCACAAAA
73257105 TCACAAAA
1 TCACAAAA
73257113 TCACAAAA
1 TCACAAAA
73257121 TACACAAAA
1 T-CACAAAA
73257130 T
1 T
73257131 TTCTTTGCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.62, C:0.24, G:0.00, T:0.15
Consensus pattern (8 bp):
TCACAAAA
Found at i:73264431 original size:43 final size:41
Alignment explanation
Indices: 73264308--73264431 Score: 108
Period size: 43 Copynumber: 2.9 Consensus size: 41
73264298 GAAAAGCTCA
* * *
73264308 TACAATGCCAACATCCCAGACATGGTCTTACATGTAATCAAC
1 TACAATGCCAACGT-CCAGACGTGGTCTTACATGAAATCAAC
* * *
73264350 TATCGATGCC-ACTGTTCCAGACAG-GGTCTTACACGAAATCAAG
1 TA-CAATGCCAAC-G-TCCAGAC-GTGGTCTTACATGAAATCAAC
*
73264393 TACAATGCCAACGTCCTAGACGTGGTCTTGCATTGAAAT
1 TACAATGCCAACGTCC-AGACGTGGTCTTACA-TGAAAT
73264432 TATAAGTCGA
Statistics
Matches: 65, Mismatches: 9, Indels: 15
0.73 0.10 0.17
Matches are distributed among these distances:
41 4 0.06
42 23 0.35
43 37 0.57
44 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (41 bp):
TACAATGCCAACGTCCAGACGTGGTCTTACATGAAATCAAC
Found at i:73269503 original size:33 final size:34
Alignment explanation
Indices: 73269461--73269535 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
73269451 GGCCTAAGCC
73269461 CAGTATCAGTGT-GGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
* *
73269494 CAGTATCAGTGTGGGCCTTAGCCTATTATAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
73269528 CAGTATCA
1 CAGTATCA
73269536 TAAATGCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 12 0.31
34 27 0.69
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
Found at i:73271156 original size:54 final size:54
Alignment explanation
Indices: 73271109--73271297 Score: 179
Period size: 54 Copynumber: 3.5 Consensus size: 54
73271099 TTTTACACTA
* * *
73271109 CAGGGGTATGTCGGTCATTTTAC-ACTACAAGGGTATTTTGATAATTTTACAAAT
1 CAGGGGTATGTCGGTAATTTTACAAAT-CAAGGGTATTTCGATAATTTTACAAAT
* * *
73271163 CGGGGGTGTTTCGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAAT
1 CAGGGGTATGTCGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAAT
* * * * * * *
73271217 C-GAGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTTGGTAATTTTACAAAT
1 CAG-GGGTATGTCGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAAT
* *
73271271 CGAGGGTGT-T-TTGATAATTTTACAAAT
1 C-AGGG-GTATGTCGGTAATTTTACAAAT
73271298 TGGGGGTCTT
Statistics
Matches: 117, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
53 1 0.01
54 108 0.92
55 5 0.04
56 3 0.03
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (54 bp):
CAGGGGTATGTCGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAAT
Found at i:73271233 original size:81 final size:81
Alignment explanation
Indices: 73271138--73271297 Score: 275
Period size: 81 Copynumber: 2.0 Consensus size: 81
73271128 TTACACTACA
*
73271138 AGGGTATTTTGATAATTTTACAAATCGGGGGTGTTTCGGTAATTTTACAAATCAAGGGTATTTCG
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCAAGGGTATTTCG
73271203 ATAATTTTACAAATCG
66 ATAATTTTACAAATCG
* * * *
73271219 AGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTTGGTAATTTTACAAATCGAGGGTGTTTTG
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCAAGGGTATTTCG
73271284 ATAATTTTACAAAT
66 ATAATTTTACAAAT
73271298 TGGGGGTCTT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCAAGGGTATTTCG
ATAATTTTACAAATCG
Found at i:73271304 original size:27 final size:27
Alignment explanation
Indices: 73271138--73271297 Score: 239
Period size: 27 Copynumber: 5.9 Consensus size: 27
73271128 TTACACTACA
73271138 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* * * * *
73271165 GGGGTGTTTCGGTAATTTTACAAATCA
1 AGGGTATTTTGATAATTTTACAAATCG
*
73271192 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
73271219 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
73271246 AGGGTGTTTTGGTAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
*
73271273 AGGGTGTTTTGATAATTTTACAAAT
1 AGGGTATTTTGATAATTTTACAAAT
73271298 TGGGGGTCTT
Statistics
Matches: 120, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGATAATTTTACAAATCG
Found at i:73271315 original size:27 final size:27
Alignment explanation
Indices: 73271150--73271317 Score: 171
Period size: 27 Copynumber: 6.2 Consensus size: 27
73271140 GGTATTTTGA
* * *
73271150 TAATTTTACAAATCGGGGGTGTTTCGG
1 TAATTTTACAAATCGAGGGTATTTCAG
*
73271177 TAATTTTACAAATCAAGGGTATTTC-G
1 TAATTTTACAAATCGAGGGTATTTCAG
*
73271203 ATAATTTTACAAATCGAGGGTATTT-TG
1 -TAATTTTACAAATCGAGGGTATTTCAG
* **
73271230 ATAATTTTACAAATCGAGGGTGTTTTGG
1 -TAATTTTACAAATCGAGGGTATTTCAG
* *
73271258 TAATTTTACAAATCGAGGGTGTTT-TG
1 TAATTTTACAAATCGAGGGTATTTCAG
* * *
73271284 ATAATTTTACAAATTGGGGGTCTTTCAG
1 -TAATTTTACAAATCGAGGGTATTTCAG
73271312 TAATTT
1 TAATTT
73271318 CTCTTTATTA
Statistics
Matches: 125, Mismatches: 11, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
26 2 0.02
27 121 0.97
28 2 0.02
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCAG
Found at i:73271315 original size:54 final size:53
Alignment explanation
Indices: 73271138--73271317 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 53
73271128 TTACACTACA
* * * * *
73271138 AGGGTATTTTGATAATTTTACAAATCGGGGGTGTTTCGGTAATTTTACAAATCA
1 AGGGTATTTCG-TAATTTTACAAATCGAGGGTGTTTTGATAATTTTACAAATCG
*
73271192 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCG-TAATTTTACAAATCGAGGGTGTTTTGATAATTTTACAAATCG
* * *
73271246 AGGGTGTTTTGGTAATTTTACAAATCGAGGGTGTTTTGATAATTTTACAAATTG
1 AGGGT-ATTTCGTAATTTTACAAATCGAGGGTGTTTTGATAATTTTACAAATCG
* *
73271300 GGGGTCTTTCAGTAATTT
1 AGGGTATTTC-GTAATTT
73271318 CTCTTTATTA
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 3 0.03
54 104 0.94
55 4 0.04
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (53 bp):
AGGGTATTTCGTAATTTTACAAATCGAGGGTGTTTTGATAATTTTACAAATCG
Found at i:73271670 original size:28 final size:28
Alignment explanation
Indices: 73271634--73271697 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
73271624 TGGCCCCTTT
* * *
73271634 AGGCCCAATCTCGTTCACATGGCCTATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
73271662 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
73271690 AGGCCCAA
1 AGGCCCAA
73271698 CTACTTCCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.27, C:0.36, G:0.17, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:73273634 original size:39 final size:38
Alignment explanation
Indices: 73273576--73273718 Score: 135
Period size: 39 Copynumber: 3.7 Consensus size: 38
73273566 CCGCACCAAG
* * *
73273576 GCCTACGGGACTTAACCCGGATATCACGA-TTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATAT-ACGACTAGCAC-AAT
* * * *
73273615 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAACCCGGATA-TACGACTAGCAC-AAT
* * *
73273655 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACATT
1 GCCTTCGGGTCTTAACCCGGATATA-CGACTAGCACAAT
*
73273694 GCCTTCGGGTCTTAACCCGGTTATA
1 GCCTTCGGGTCTTAACCCGGATATA
73273719 ATTTCCAGCA
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 49 0.56
40 38 0.44
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (38 bp):
GCCTTCGGGTCTTAACCCGGATATACGACTAGCACAAT
Found at i:73273650 original size:79 final size:79
Alignment explanation
Indices: 73273567--73273713 Score: 181
Period size: 79 Copynumber: 1.9 Consensus size: 79
73273557 TATGGTAACC
* * *
73273567 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCAC-AATGCCTTCGGGTCTTAA
73273630 CCCGGATAGAATGACT
64 CCCGGATAGAATGACT
* * * * * *
73273646 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACATTGCCTTCGGGTCTTAACC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAACC
73273711 CGG
66 CGG
73273714 TTATAATTTC
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
78 1 0.02
79 51 0.89
80 5 0.09
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.22
Consensus pattern (79 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAACC
CGGATAGAATGACT
Found at i:73273659 original size:40 final size:39
Alignment explanation
Indices: 73273607--73273713 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 39
73273597 TATCACGATT
** *
73273607 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
73273647 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
73273687 GCACATTGCCTTCGGGTCTTAACCCGG
1 GCACAATGCCTTCGGGTCTTAGCCCGG
73273714 TTATAATTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 21 0.36
40 38 0.64
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:73281733 original size:79 final size:80
Alignment explanation
Indices: 73281650--73281797 Score: 183
Period size: 79 Copynumber: 1.9 Consensus size: 80
73281640 TATGGTAACC
* * *
73281650 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
73281713 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
73281729 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
73281794 CCGG
66 CCGG
73281798 TTATAATTTC
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
78 1 0.02
79 30 0.53
80 26 0.46
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:73281742 original size:40 final size:40
Alignment explanation
Indices: 73281690--73281797 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
73281680 TATCACGATT
** *
73281690 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
73281730 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
73281770 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
73281798 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:73288720 original size:43 final size:43
Alignment explanation
Indices: 73288659--73288819 Score: 161
Period size: 43 Copynumber: 3.7 Consensus size: 43
73288649 AAAGCTCGTA
* *
73288659 CAATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATAT
* * *
73288702 CAATGCC-ACTGTCCTAGACAGT-GTCTTACACGAAATCAAGTAT
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCAAATAT
* *
73288745 -GAT-CCGAACGTCCCAGACGTGGTCTTACACGTAAATCATAA-GT
1 CAATGCC-AACGTCCCAGACGTGGTCTTACACGT-AATCA-AATAT
* *
73288788 CGATGCCAATGTCCCAGACGTGGTCTTACACG
1 CAATGCCAACGTCCCAGACGTGGTCTTACACG
73288820 ATAACACATA
Statistics
Matches: 100, Mismatches: 9, Indels: 17
0.79 0.07 0.13
Matches are distributed among these distances:
41 4 0.04
42 22 0.22
43 42 0.42
44 30 0.30
45 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATAT
Found at i:73291250 original size:43 final size:43
Alignment explanation
Indices: 73291130--73291286 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
73291120 AGCTCTTACA
*
73291130 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATAG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCAAATA-AG
* * *
73291173 ATGCC-ACTGTCCCAGACAGGGTCTTACACG-AAATCAAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAAATCAAATAAG
* * *
73291215 ATGCCAATGTCCTAGACATGGTCTTACATGTAAATCATAAGT-TG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCA-AA-TAAG
* *
73291259 ATGCCAACGTCCCAGACGTGCTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
73291287 CGATAACACA
Statistics
Matches: 95, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 27 0.28
43 40 0.42
44 27 0.28
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCAAATAAG
Found at i:73291284 original size:86 final size:85
Alignment explanation
Indices: 73291130--73291289 Score: 211
Period size: 86 Copynumber: 1.9 Consensus size: 85
73291120 AGCTCTTACA
* *
73291130 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATAGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATAGATGCCACTGTCCCAGACAGGCT
73291195 CTTACACGAAATCAAATACG
66 CTTACACGAAATCAAATACG
* *
73291215 ATGCCAATGTCCTAGACATGGTCTTACATGTAAATCATAAGT-T-GATGCCAAC-GTCCCAGAC-
1 ATGCCAACGTCCCAGACATGGTCTTACATGT-AATCA-AA-TATAGATGCC-ACTGTCCCAGACA
73291276 GTGCTCTTACACGA
62 G-GCTCTTACACGA
73291290 TAACACATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
85 29 0.44
86 31 0.47
87 5 0.08
88 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATAGATGCCACTGTCCCAGACAGGCT
CTTACACGAAATCAAATACG
Found at i:73294197 original size:49 final size:49
Alignment explanation
Indices: 73294045--73294264 Score: 183
Period size: 49 Copynumber: 4.6 Consensus size: 49
73294035 GAAACGATGC
* * *
73294045 CGATGCCATGTTCC-AAACATGGTCTTACATTGGCTCTCAC--ATCTAAGT
1 CGATGCCATG-TCCTAGACA-GGTCTTACACTGGCTCTCACTTATCTGAGT
* * *
73294093 CGATGCCATGTCCCAGATAGGTCTTACACTGACT-TC-CATATAT-TGAGGT
1 CGATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCAC-T-TATCTGA-GT
** *
73294142 TAATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCACTTATCTGTGT
1 CGATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCACTTATCTGAGT
* * * * * *
73294191 CGATGCCATGTCCTAGACAGGTCTTACAAT-G-ACACAC--CTC-AAGC
1 CGATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCACTTATCTGAGT
73294235 CGATGCCATGTCCTAGACAGGTCTTACACT
1 CGATGCCATGTCCTAGACAGGTCTTACACT
73294265 AGCTTGCATA
Statistics
Matches: 142, Mismatches: 21, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
44 30 0.21
45 3 0.02
46 2 0.01
47 20 0.14
48 16 0.11
49 65 0.46
50 5 0.04
51 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCACTTATCTGAGT
Found at i:73294215 original size:98 final size:97
Alignment explanation
Indices: 73294047--73294223 Score: 250
Period size: 98 Copynumber: 1.8 Consensus size: 97
73294037 AACGATGCCG
* *
73294047 ATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCACATCTAAGTCGATGCCATGTCCCAGATA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACATCTAAGTCGATGCCATGTCCCAGACA
*
73294112 GGTCTTACACTGACTTCCATATATTGAGGTTA
66 GGTCTTACAATGACTTCCATATATTGAGGTTA
* ** *
73294144 ATGCCATG-TCCTAGACA-GGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCTAG
1 ATGCCATGTTCC-AAACATGGTCTTACACTGGCTCTCAC--ATCTAAGTCGATGCCATGTCCCAG
73294207 ACAGGTCTTACAATGAC
63 ACAGGTCTTACAATGAC
73294224 ACACCTCAAG
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
96 22 0.31
97 12 0.17
98 36 0.51
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (97 bp):
ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACATCTAAGTCGATGCCATGTCCCAGACA
GGTCTTACAATGACTTCCATATATTGAGGTTA
Found at i:73294351 original size:142 final size:145
Alignment explanation
Indices: 73294042--73294374 Score: 354
Period size: 142 Copynumber: 2.3 Consensus size: 145
73294032 TAGGAAACGA
* * * * *
73294042 TGCCGATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCACATCTAAGTCGATGCCATGTCCC
1 TGCCGATGCCATGTTCCAGACA-GGTCTTACAATGGCACACACATCTAAGCCGATGCCATGTCCC
* * ** * * *
73294107 AGATAGGTCTTACACTGACTTCCATATATTGAGGTTAATGCCATGTCCTAGACAGGTCTTACACT
65 AGACAGGTCTTACACTGACTTCCATATATTGAAGCCAATGCCATATCCCAGAAAGGTCTTACACT
*
73294172 GGCTCTCACTTATCTG
130 GGCTCTCACTTATCAG
* * *
73294188 TGTCGATGCCATG-TCCTAGACAGGTCTTACAAT-G-ACACACCTC-AAGCCGATGCCATGTCCT
1 TGCCGATGCCATGTTCC-AGACAGGTCTTACAATGGCACACACATCTAAGCCGATGCCATGTCCC
* * * *** *
73294249 AGACAGGTCTTACACT-AGCTTGCATATCTTGAAGCCGATGTTGTATCCCAGAAAGGTCTTATAC
65 AGACAGGTCTTACACTGA-CTTCCATATATTGAAGCCAATGCCATATCCCAGAAAGGTCTTACAC
73294313 TGGCTCTCA-TCTATCAG
129 TGGCTCTCACT-TATCAG
* * *
73294330 TGCCGATGCCATGTTCCAGACAAGTCTTACACTAGCACACACATC
1 TGCCGATGCCATGTTCCAGACAGGTCTTACAATGGCACACACATC
73294375 ATCCAAATGT
Statistics
Matches: 154, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
141 2 0.01
142 104 0.68
143 10 0.06
144 9 0.06
145 13 0.08
146 16 0.10
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (145 bp):
TGCCGATGCCATGTTCCAGACAGGTCTTACAATGGCACACACATCTAAGCCGATGCCATGTCCCA
GACAGGTCTTACACTGACTTCCATATATTGAAGCCAATGCCATATCCCAGAAAGGTCTTACACTG
GCTCTCACTTATCAG
Found at i:73297710 original size:43 final size:43
Alignment explanation
Indices: 73297539--73297711 Score: 138
Period size: 43 Copynumber: 4.0 Consensus size: 43
73297529 ACATAGGATT
* * *
73297539 TCGATATGTGATTTCATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGAGTTCATGTAAGACCACGTTTGGGACTTTGGCA
* * * * * * **
73297582 TCGATTTGTGATTTGCGTGTTAGACCATGTTTGGGACATCAGCA
1 TCGATATGTGAGTT-CATGTAAGACCACGTTTGGGACTTTGGCA
* * * * *
73297626 TCG-TATATGAGTTCGTGTAAAACC-CTGTATGGGA-TAGTGGCA
1 TCGATATGTGAGTTCATGTAAGACCAC-GTTTGGGACT-TTGGCA
73297668 TCGATATGTGA-TTACATGTAAGACCACGTTTGGGACTTTGGCA
1 TCGATATGTGAGTT-CATGTAAGACCACGTTTGGGACTTTGGCA
73297711 T
1 T
73297712 TGTACAACCT
Statistics
Matches: 99, Mismatches: 24, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
42 24 0.24
43 48 0.48
44 27 0.27
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
TCGATATGTGAGTTCATGTAAGACCACGTTTGGGACTTTGGCA
Found at i:73304470 original size:49 final size:49
Alignment explanation
Indices: 73304414--73304535 Score: 156
Period size: 49 Copynumber: 2.5 Consensus size: 49
73304404 AAGTCAATGT
* *
73304414 CATGTCCCAGACAGGTCTTACACTGACT-TCCAAATATCAAGGCCGGTGC
1 CATGTCCCAGACAGGTCTTACACTGACTCT-CAAATATCAAGGCAGATGC
* ** **
73304463 CATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGGGCAGATGC
1 CATGTCCCAGACAGGTCTTACACTGACTCTCAAATATCAAGGCAGATGC
*
73304512 CATGTCCCAGATAGGTCTTACACT
1 CATGTCCCAGACAGGTCTTACACT
73304536 AGCTTGCATA
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
49 63 0.98
50 1 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (49 bp):
CATGTCCCAGACAGGTCTTACACTGACTCTCAAATATCAAGGCAGATGC
Found at i:73305230 original size:12 final size:12
Alignment explanation
Indices: 73305215--73305246 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
73305205 TATAACACAT
73305215 AAAATAATATTG
1 AAAATAATATTG
73305227 AAAATAATATTG
1 AAAATAATATTG
73305239 AAAATAAT
1 AAAATAAT
73305247 TTCTTTGACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (12 bp):
AAAATAATATTG
Found at i:73308731 original size:18 final size:18
Alignment explanation
Indices: 73308697--73308732 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
73308687 TTATCAAAAC
*
73308697 TAGAATCAAAATGAGAAT
1 TAGAATCAAAATCAGAAT
*
73308715 TAGAATCAAATTCAGAAT
1 TAGAATCAAAATCAGAAT
73308733 GAAGCCCATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.08, G:0.14, T:0.25
Consensus pattern (18 bp):
TAGAATCAAAATCAGAAT
Found at i:73308934 original size:27 final size:26
Alignment explanation
Indices: 73308893--73308973 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 26
73308883 AGCATGGCTG
* *
73308893 CCAGAACTGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
73308919 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
73308946 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGACAGAGCCA
73308973 C
1 C
73308974 TTAACAGAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.12
27 42 0.88
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:73309212 original size:27 final size:26
Alignment explanation
Indices: 73309173--73309254 Score: 110
Period size: 27 Copynumber: 3.1 Consensus size: 26
73309163 TCGATCGGTC
* *
73309173 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTGGCAAAGCCACCAG
*
73309199 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAAAGCCACCAG
*
73309226 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAAAGCCACCAG
73309253 AA
1 AA
73309255 TGCTACCTCC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:73309498 original size:27 final size:27
Alignment explanation
Indices: 73309480--73309809 Score: 504
Period size: 27 Copynumber: 12.2 Consensus size: 27
73309470 GGGTAAAATG
*
73309480 GTAATTTTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
73309507 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
73309534 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
73309561 GTAATT-TAACCTTACAGTGGTATTTCA
1 GTAATTCT-ACCCTACAGGGGTATTTCA
* *
73309588 GTAATTCTACCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
73309615 GTAATTCTACCCTAAAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
73309642 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
73309669 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
73309695 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
73309723 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
73309750 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
73309776 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
73309804 ATAATT
1 GTAATT
73309810 TTGTCAATCG
Statistics
Matches: 280, Mismatches: 17, Indels: 12
0.91 0.06 0.04
Matches are distributed among these distances:
26 3 0.01
27 275 0.98
28 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:73309824 original size:27 final size:26
Alignment explanation
Indices: 73309794--73310031 Score: 122
Period size: 27 Copynumber: 8.8 Consensus size: 26
73309784 TACCCTACAG
* *
73309794 GGGTATTTCAATAATTTTGTCAATCGA
1 GGGTATTTCAGTAATTTT-ACAATCGA
*** * *
73309821 GGGTAAAACGGTAATTCTATA-AATCGG
1 GGGTATTTCAGTAATT-T-TACAATCGA
*
73309848 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTACAA-TCGA
* *
73309875 AGGTATTTCAATAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTAC-AATCGA
* *
73309902 GGGTATTTCAGTAATTTTGCAAACTGA
1 GGGTATTTCAGTAATTTTACAATC-GA
* * * *
73309929 GGGTATTTCGGTAATTTCAAAAAT-TA
1 GGGTATTTCAGTAATTT-TACAATCGA
** * *
73309955 GGGGTATTTTGGTAATTTTACAAACCAA
1 -GGGTATTTCAGTAATTTTAC-AATCGA
** * *
73309983 GGGTATTTTGGTAATTTTACAAACCA
1 GGGTATTTCAGTAATTTTACAATCGA
**
73310009 GGGGTATTTTGGTAATTTTACAA
1 -GGGTATTTCAGTAATTTTACAA
73310032 ACCAGGGGTA
Statistics
Matches: 167, Mismatches: 31, Indels: 26
0.75 0.14 0.12
Matches are distributed among these distances:
25 2 0.01
26 15 0.09
27 143 0.86
28 6 0.04
29 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (26 bp):
GGGTATTTCAGTAATTTTACAATCGA
Found at i:73309851 original size:81 final size:81
Alignment explanation
Indices: 73309519--73309852 Score: 230
Period size: 81 Copynumber: 4.1 Consensus size: 81
73309509 AATTCTACCC
* ** *
73309519 TACAGGGGTATTTC-AGTAATTCTACCCTACAGGGGTATTTCAGTAATT-TAACCTTACAGTGGT
1 TACAGGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCAATAATTCT-ACAATACAGGGGT
*** * ***
73309582 ATTTCAGTAATTCTACCC
64 AAAACGGTAATTCTAAAA
* * * * ** *
73309600 TATAAGGGTATTTC-AGTAATTCTACCCTAAAGGGGTATTTCAGTAATTCTACCCTACAAGGGTA
1 TACAGGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCAATAATTCTACAATACAGGGGTA
*** * ***
73309664 TTTCGGTATTTCTACCC
65 AAACGGTAATTCTAAAA
* * ** *
73309681 TACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTAT
1 TACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACAATACAGGGGTAA
** ***
73309746 TTCGGTAATTCTACCC
66 AACGGTAATTCTAAAA
* *
73309762 TACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAATAATTTTGTCAAT-C-GAGGGT
1 TACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCT-ACAATACAG-GGGT
73309825 AAAACGGTAATTCTATAAA
64 AAAACGGTAATTCTA-AAA
*
73309844 T-CGGGGGTA
1 TACAGGGGTA
73309853 CTTTGGTAAT
Statistics
Matches: 223, Mismatches: 25, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
80 1 0.00
81 217 0.97
82 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (81 bp):
TACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACAATACAGGGGTAA
AACGGTAATTCTAAAA
Found at i:73309933 original size:81 final size:80
Alignment explanation
Indices: 73309847--73310032 Score: 187
Period size: 81 Copynumber: 2.3 Consensus size: 80
73309837 CTATAAATCG
* * *
73309847 GGGGTACTTTGGTAATTTTACAAGTCGA-AGGTATTTCAATAATTTTACAAATCGAGGGTATTTC
1 GGGGTA-TTTGGTAATTTTACAAAT-GAGAGGTATTTCAATAATTTTACAAACCAAGGGTATTTC
* *
73309911 AGTAATTTTGCAAA-CT
64 AGTAATTTTACAAACCA
* * * * *** *
73309927 GAGGGTATTTCGGTAATTTCAAAAATTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
1 G-GGGTATTT-GGTAATTTTACAAATGAGAGGTATTTCAATAATTTTACAAACCAAGGGTATTTC
*
73309992 GGTAATTTTACAAACCA
64 AGTAATTTTACAAACCA
73310009 GGGGTATTTTGGTAATTTTACAAA
1 GGGGTA-TTTGGTAATTTTACAAA
73310033 CCAGGGGTAT
Statistics
Matches: 85, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
80 5 0.06
81 75 0.88
82 5 0.06
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.38
Consensus pattern (80 bp):
GGGGTATTTGGTAATTTTACAAATGAGAGGTATTTCAATAATTTTACAAACCAAGGGTATTTCAG
TAATTTTACAAACCA
Found at i:73310034 original size:54 final size:54
Alignment explanation
Indices: 73309829--73310053 Score: 229
Period size: 54 Copynumber: 4.2 Consensus size: 54
73309819 GAGGGTAAAA
* * * * * *
73309829 CGGTAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAAGTCGAA-GGTATTT
1 CGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAA-ACCAAGGGTATTT
** ** * **
73309883 CAATAATTTTACAAATC-GAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTT
1 CGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
* * *
73309937 CGGTAATTTCAAAAATTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
1 CGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
* * *
73309991 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 CGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
* *
73310045 TGGTGATTT
1 CGGTAATTT
73310054 GGTAAACTAA
Statistics
Matches: 140, Mismatches: 28, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
53 3 0.02
54 136 0.97
55 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (54 bp):
CGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
Found at i:73310060 original size:27 final size:27
Alignment explanation
Indices: 73309886--73310053 Score: 196
Period size: 27 Copynumber: 6.2 Consensus size: 27
73309876 GGTATTTCAA
* **
73309886 TAATTTTACAAATC-GAGGGTATTTCAG
1 TAATTTTACAAACCAG-GGGTATTTTGG
* * *
73309913 TAATTTTGCAAA-CTGAGGGTATTTCGG
1 TAATTTTACAAACCAG-GGGTATTTTGG
* * **
73309940 TAATTTCAAAAATTAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
*
73309967 TAATTTTACAAACCAAGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
73309994 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
73310021 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
*
73310048 TGATTT
1 TAATTT
73310054 GGTAAACTAA
Statistics
Matches: 124, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 122 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
TAATTTTACAAACCAGGGGTATTTTGG
Found at i:73318004 original size:42 final size:42
Alignment explanation
Indices: 73317957--73318061 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 42
73317947 CACACGGCCA
73317957 AGACACATGCCTGTGTTCTAGGCCGTGTAGCACACACGACTG
1 AGACACATGCCTGTGTTCTAGGCCGTGTAGCACACACGACTG
* * *
73317999 AGACACACGCTCATGT-TT-TAGGCCGTGTAGCACACATGGCTG
1 AGACACATGC-C-TGTGTTCTAGGCCGTGTAGCACACACGACTG
*
73318041 AGACACATGCTTGTGTCTCTA
1 AGACACATGCCTGTGT-TCTA
73318062 CATGTGTGCT
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
40 3 0.06
41 1 0.02
42 41 0.77
43 5 0.09
44 3 0.06
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.25
Consensus pattern (42 bp):
AGACACATGCCTGTGTTCTAGGCCGTGTAGCACACACGACTG
Found at i:73332457 original size:28 final size:27
Alignment explanation
Indices: 73332394--73332463 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
73332384 ATAGTGAGTC
73332394 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
73332421 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
73332449 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73332464 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:73334235 original size:40 final size:40
Alignment explanation
Indices: 73334137--73334247 Score: 152
Period size: 40 Copynumber: 2.8 Consensus size: 40
73334127 GGGCTGTCAA
** *
73334137 AAATGCCTTCGGGA-CTTAACCCGGATTTGGTAACTCGCAC
1 AAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCAC
*
73334177 AAATGCCTTCGGATCTTAGTCTGGATTTAGTAACTCGCAC
1 AAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCAC
* *
73334217 AAATGCCTTCGGATCTTAGTTCGGATATAGT
1 AAATGCCTTCGGATCTTAGTCCGGATTTAGT
73334248 CACTTAGCAT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
39 3 0.05
40 60 0.95
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.31
Consensus pattern (40 bp):
AAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCAC
Found at i:73334265 original size:40 final size:40
Alignment explanation
Indices: 73334166--73334268 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
73334156 CCCGGATTTG
* *
73334166 GTAACTCGCACAAATGCCTTCGGATCTTAGTCTGGATTTA
1 GTAACTAGCACAAATGCCTTCGGATCTTAGTCTGGATATA
*
73334206 GTAACTCGCACAAATGCCTTCGGATCTTAGT-TCGGATATA
1 GTAACTAGCACAAATGCCTTCGGATCTTAGTCT-GGATATA
* *
73334246 GTCACTTAGCATAAA-GCCTTCGG
1 GTAAC-TAGCACAAATGCCTTCGG
73334269 GACTCAGCCC
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
39 1 0.02
40 49 0.86
41 7 0.12
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (40 bp):
GTAACTAGCACAAATGCCTTCGGATCTTAGTCTGGATATA
Found at i:73342133 original size:40 final size:40
Alignment explanation
Indices: 73342096--73342281 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
73342086 GCTACTCGTT
*
73342096 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
73342136 CAAATGCCTTCGGGACTTAACCCGGATTTGGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
73342176 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
73342216 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
* *
73342257 TAAA-GCCTTCGGGACTCAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73342282 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:73346148 original size:2 final size:2
Alignment explanation
Indices: 73346141--73346174 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
73346131 ACCAGAACAG
73346141 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73346175 GTGGCGAAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73355232 original size:26 final size:26
Alignment explanation
Indices: 73355202--73355254 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
73355192 TAAGCCTACG
73355202 TAAGATTTCTGTCGATCGGATGCTGC
1 TAAGATTTCTGTCGATCGGATGCTGC
* *
73355228 TAAGATTTTTGTCGATCTGATGCTGC
1 TAAGATTTCTGTCGATCGGATGCTGC
73355254 T
1 T
73355255 TTCAAACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.40
Consensus pattern (26 bp):
TAAGATTTCTGTCGATCGGATGCTGC
Found at i:73356156 original size:63 final size:63
Alignment explanation
Indices: 73356076--73356210 Score: 227
Period size: 63 Copynumber: 2.1 Consensus size: 63
73356066 GGCCTTTGAA
*
73356076 TCTTAA-ATAATCATCAGAATTAACTTGAAATTCTAAATTAGGGTTTGAATCACATTGATCTCG
1 TCTTAACA-AATCATCAGAATTAACTTGAAATTCTAAATTAGGGTTAGAATCACATTGATCTCG
*
73356139 TCTTAACAAATCATCAGAATTAACTTGAAATTCTGAATTAGGGTTAGAATCACATTGATCTCG
1 TCTTAACAAATCATCAGAATTAACTTGAAATTCTAAATTAGGGTTAGAATCACATTGATCTCG
*
73356202 TTTTAACAA
1 TCTTAACAA
73356211 CATTTCATTA
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
63 67 0.99
64 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.36
Consensus pattern (63 bp):
TCTTAACAAATCATCAGAATTAACTTGAAATTCTAAATTAGGGTTAGAATCACATTGATCTCG
Found at i:73357160 original size:26 final size:26
Alignment explanation
Indices: 73357100--73357151 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
73357090 ATCATGAGAG
73357100 TAAATCAAAATGTCATCAATGAATAC
1 TAAATCAAAATGTCATCAATGAATAC
73357126 TAAATCAAAATGTCATCAATGAATAC
1 TAAATCAAAATGTCATCAATGAATAC
73357152 AATGACAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.50, C:0.15, G:0.08, T:0.27
Consensus pattern (26 bp):
TAAATCAAAATGTCATCAATGAATAC
Found at i:73367644 original size:40 final size:40
Alignment explanation
Indices: 73367495--73367680 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
73367485 TCGAATGATG
* * *
73367495 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
73367535 TCCGGACTAA-TATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCCGAAGGCATTTGTGCGAGTTACTAAA
* *
73367575 TCCGGACTAAGAT-CCGAAGACATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
73367615 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
73367656 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73367681 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 12
0.84 0.09 0.08
Matches are distributed among these distances:
39 2 0.02
40 115 0.91
41 9 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73367687 original size:80 final size:79
Alignment explanation
Indices: 73367548--73367703 Score: 183
Period size: 80 Copynumber: 2.0 Consensus size: 79
73367538 GGACTAATAT
* **
73367548 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGACATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGACATTTGAACGAG-TAGCT
73367612 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* * **
73367628 CCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGACATTTGAACGAGTAGC
*
73367691 TATATCCGGTTAA
64 TAAATCCGGTTAA
73367704 ACTCCGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
79 9 0.14
80 54 0.83
81 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGACATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:73369282 original size:21 final size:20
Alignment explanation
Indices: 73369217--73369283 Score: 55
Period size: 21 Copynumber: 3.3 Consensus size: 20
73369207 AAAATACAAC
** *
73369217 AACAAAAACAAAAAGGAAAG
1 AACAAAAATGAAAAGTAAAG
* *
73369237 AA-AAAAATGAAAATCTAAAC
1 AACAAAAATGAAAA-GTAAAG
*
73369257 TACAAAATATGAAAAGTAAAG
1 AACAAAA-ATGAAAAGTAAAG
73369278 AACAAA
1 AACAAA
73369284 TGTTCAAAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 5
0.71 0.18 0.10
Matches are distributed among these distances:
19 9 0.26
20 6 0.17
21 13 0.37
22 7 0.20
ACGTcount: A:0.70, C:0.09, G:0.10, T:0.10
Consensus pattern (20 bp):
AACAAAAATGAAAAGTAAAG
Found at i:73374776 original size:40 final size:40
Alignment explanation
Indices: 73374699--73374916 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
73374689 AAACCAAGTA
* *
73374699 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
73374738 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73374778 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73374818 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
73374858 CCTTCGAGACTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
73374898 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73374917 TTATCATCCG
Statistics
Matches: 162, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
39 15 0.09
40 147 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73377857 original size:39 final size:40
Alignment explanation
Indices: 73377773--73377857 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
73377763 ACTTAATTCA
* * *
73377773 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
* *
73377813 CCAGCATGAAGCCAGCGGGTCTCT-AACCCGGATGCAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
*
73377852 TCAGCA
1 CCAGCA
73377858 CAATTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 19 0.49
40 20 0.51
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.18
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
Found at i:73378029 original size:47 final size:45
Alignment explanation
Indices: 73377933--73378036 Score: 147
Period size: 45 Copynumber: 2.3 Consensus size: 45
73377923 ACTTTTCACA
* *
73377933 ATTGGTCATTCGGCCTTATCACATATTCACTTACACATATATCAC
1 ATTGGCCATTCGGCCTTATCACATATTCACTTACACATATATAAC
*
73377978 ATTGGCCATTCGGCCTTATCACATATTCACACTTTCACAT-TCATAAC
1 ATTGGCCATTCGGCCTTATCACATATT--CACTTACACATAT-ATAAC
73378025 ATTGGCCATTCG
1 ATTGGCCATTCG
73378037 ATCTTAAGCT
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
45 26 0.49
46 1 0.02
47 26 0.49
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.35
Consensus pattern (45 bp):
ATTGGCCATTCGGCCTTATCACATATTCACTTACACATATATAAC
Found at i:73384161 original size:30 final size:30
Alignment explanation
Indices: 73384127--73384187 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
73384117 TCCTTAACTC
73384127 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
73384157 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
73384187 A
1 A
73384188 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:73386432 original size:40 final size:39
Alignment explanation
Indices: 73386395--73386524 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
73386385 TGAGGAATTG
*
73386395 TATCCAGGCTTAAAGACTCGCAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGAC-CGCAGGCTATATGCTGGAATGT
*
73386435 TATCCGGGCTTAAAGACCTGCAGGCTATATGCTAGAATGT
1 TATCCGGGCTTAAAGACC-GCAGGCTATATGCTGGAATGT
* * * * *
73386475 TATTCGGGCTTAAAGACCCACAGGCT-TCGTGCTAGAATGC
1 TATCCGGGCTTAAAGA-CCGCAGGCTAT-ATGCTGGAATGT
73386515 TATCCGGGCT
1 TATCCGGGCT
73386525 AGAGACCTAC
Statistics
Matches: 80, Mismatches: 7, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
39 2 0.03
40 76 0.95
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (39 bp):
TATCCGGGCTTAAAGACCGCAGGCTATATGCTGGAATGT
Found at i:73393034 original size:11 final size:11
Alignment explanation
Indices: 73393018--73393046 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
73393008 TAAGTGTGCT
73393018 GAGAAGTGTTG
1 GAGAAGTGTTG
73393029 GAGAAGTGTTG
1 GAGAAGTGTTG
73393040 GAGAAGT
1 GAGAAGT
73393047 TCTGGGTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.45, T:0.24
Consensus pattern (11 bp):
GAGAAGTGTTG
Found at i:73394441 original size:23 final size:23
Alignment explanation
Indices: 73394387--73394551 Score: 267
Period size: 23 Copynumber: 7.1 Consensus size: 23
73394377 GCTAGCCTCT
*
73394387 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
73394410 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
73394434 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* **
73394457 TTTAATGACTGGGGCATAAGCAT
1 TTTAATAACTGGGGCATAAGCCC
*
73394480 TTTAATGACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
73394503 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
73394526 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
73394549 TTT
1 TTT
73394552 CGCACTTCCT
Statistics
Matches: 132, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
23 110 0.83
24 22 0.17
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:73394624 original size:9 final size:9
Alignment explanation
Indices: 73394610--73394686 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
73394600 ATCTCATGTG
73394610 CATATCATA
1 CATATCATA
*
73394619 CATATCATGTG
1 CATATCA--TA
73394630 CATATCATA
1 CATATCATA
*
73394639 CATATCATGTG
1 CATATCA--TA
73394650 CATATCATA
1 CATATCATA
* *
73394659 CATGTCATGTG
1 CATATCA--TA
73394670 CATATCATA
1 CATATCATA
73394679 CATATCAT
1 CATATCAT
73394687 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:73394626 original size:20 final size:20
Alignment explanation
Indices: 73394598--73394688 Score: 164
Period size: 20 Copynumber: 4.5 Consensus size: 20
73394588 GCATTTATGA
*
73394598 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
73394618 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
73394638 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
73394658 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
73394678 ACATATCATGT
1 ACATATCATGT
73394689 TTATCAAAAT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 68 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:73394633 original size:11 final size:11
Alignment explanation
Indices: 73394603--73394677 Score: 72
Period size: 11 Copynumber: 7.4 Consensus size: 11
73394593 TATGAACATC
73394603 TCATGTGCATA
1 TCATGTGCATA
*
73394614 TCA--TACATA
1 TCATGTGCATA
73394623 TCATGTGCATA
1 TCATGTGCATA
*
73394634 TCA--TACATA
1 TCATGTGCATA
73394643 TCATGTGCATA
1 TCATGTGCATA
* *
73394654 TCA--TACATG
1 TCATGTGCATA
73394663 TCATGTGCATA
1 TCATGTGCATA
73394674 TCAT
1 TCAT
73394678 ACATATCATG
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 23 0.46
11 27 0.54
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:73394753 original size:25 final size:25
Alignment explanation
Indices: 73394725--73394772 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73394715 ATATATAAAC
* * *
73394725 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
73394750 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
73394773 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:73395992 original size:27 final size:27
Alignment explanation
Indices: 73395930--73395992 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
73395920 GGGCATATTC
73395930 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
73395957 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
73395984 GTCTTTTTA
1 GTCATTTTA
73395993 ACTATTAGGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:73396080 original size:27 final size:28
Alignment explanation
Indices: 73396049--73396129 Score: 80
Period size: 27 Copynumber: 2.9 Consensus size: 28
73396039 TAAATCTACA
73396049 AACCAAGGGTATTTCAGTAATTTTGTAG
1 AACCAAGGGTATTTCAGTAATTTTGTAG
*
73396077 -ACCAATGGTATTTCTA-TAATTTT-TAG
1 AACCAAGGGTATTTC-AGTAATTTTGTAG
*
73396103 AAAGTCAAGGGTATTT-ATGTAATTTTG
1 -AA-CCAAGGGTATTTCA-GTAATTTTG
73396130 CAAATTAGGG
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
26 3 0.07
27 21 0.49
28 2 0.05
29 17 0.40
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (28 bp):
AACCAAGGGTATTTCAGTAATTTTGTAG
Found at i:73396151 original size:27 final size:27
Alignment explanation
Indices: 73396111--73396238 Score: 125
Period size: 27 Copynumber: 4.7 Consensus size: 27
73396101 AGAAAGTCAA
* **
73396111 GGGTATTTAT-GTAATTTTGCAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACCAG
* **
73396138 GGGTATTGTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
73396164 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* *
73396192 TGGTATTTTGGTAATTTTACAACCCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
73396219 TGGTATTTTGGTAATTTTAC
1 GGGTATTTTGGTAATTTTAC
73396239 TGATCGAGTG
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
26 3 0.03
27 82 0.95
28 1 0.01
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:73396251 original size:27 final size:27
Alignment explanation
Indices: 73396139--73396262 Score: 126
Period size: 27 Copynumber: 4.6 Consensus size: 27
73396129 GCAAATTAGG
* **
73396139 GGTATTGTGGTAATTTTACAAATTGAG-
1 GGTATTTTGGTAATTTTAC-AATCCAGT
* * *
73396166 GGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAATCCAGT
*
73396193 GGTATTTTGGTAATTTTACAACCCAGT
1 GGTATTTTGGTAATTTTACAATCCAGT
* *
73396220 GGTATTTTGGTAATTTTACTGATCGAGT
1 GGTATTTTGGTAATTTTAC-AATCCAGT
*
73396248 -GTATTTTAGTAATTT
1 GGTATTTTGGTAATTT
73396263 GGTAAATCGA
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 4 0.05
27 73 0.89
28 5 0.06
ACGTcount: A:0.27, C:0.10, G:0.21, T:0.43
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAATCCAGT
Found at i:73396285 original size:27 final size:27
Alignment explanation
Indices: 73396265--73396385 Score: 181
Period size: 27 Copynumber: 4.5 Consensus size: 27
73396255 AGTAATTTGG
73396265 TAAATCGAGGGTAAAACAGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
73396292 TAAAT-GAAGGGTAAAACATTAATTCTA
1 TAAATCG-AGGGTAAAACAGTAATTCTA
** *
73396319 TAAATCGAGGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
73396346 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
73396373 TAAATCGAGGGTA
1 TAAATCGAGGGTA
73396386 CTTTGGTAAT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
26 1 0.01
27 83 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.27
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACAGTAATTCTA
Found at i:73396422 original size:81 final size:80
Alignment explanation
Indices: 73396220--73396430 Score: 203
Period size: 81 Copynumber: 2.6 Consensus size: 80
73396210 ACAACCCAGT
* * *
73396220 GGTATTTTGGTAATTTTACTGATCGAGTGTATTTTAGTAATTTGGTAAATCGAGGGTAAAACAGT
1 GGTAATTTGGTAATTTTAC-AATCGAGGGTATTTTAGTAATTTGGTAAATCGAGGGTAAAACAGT
73396285 AATTCTATAAATGAAG
65 AATTCTATAAATGAAG
***** *** * *
73396301 GGTAAAACATTAATTCTATA-AATCGAGGGTAAAATGGTAATTCT-GTAAATCGAGGGTAAAACG
1 GGTAATTTGGTAATT-T-TACAATCGAGGGTATTTTAGTAATT-TGGTAAATCGAGGGTAAAACA
73396364 GTAATTCTATAAATCG-AG
63 GTAATTCTATAAAT-GAAG
* * *
73396382 GGTACTTTGGTAATTTTACAATTTGAGGGTATTTTAGTAATTTAGTAAA
1 GGTAATTTGGTAATTTTACAA-TCGAGGGTATTTTAGTAATTTGGTAAA
73396431 CTAAAGTATT
Statistics
Matches: 99, Mismatches: 24, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
79 2 0.02
80 4 0.04
81 88 0.89
82 3 0.03
83 2 0.02
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (80 bp):
GGTAATTTGGTAATTTTACAATCGAGGGTATTTTAGTAATTTGGTAAATCGAGGGTAAAACAGTA
ATTCTATAAATGAAG
Found at i:73398045 original size:27 final size:27
Alignment explanation
Indices: 73398015--73398178 Score: 211
Period size: 27 Copynumber: 6.1 Consensus size: 27
73398005 ACCCAAATAT
* **
73398015 CCTCGATTGACAAAATTATTATTTTAC
1 CCTCGATTTACAAAATTACCATTTTAC
* *
73398042 CCTCGATTTACAAAATTATCGTTTTAC
1 CCTCGATTTACAAAATTACCATTTTAC
* *
73398069 CCTCGATTTACAACATTACTATTTTAC
1 CCTCGATTTACAAAATTACCATTTTAC
* *
73398096 CCTCGATTTACAACATTACTATTTTAC
1 CCTCGATTTACAAAATTACCATTTTAC
* *
73398123 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTACAAAATTACCATTTTAC
* *
73398150 CCTCAATTTATAAAATTACCATTTTAC
1 CCTCGATTTACAAAATTACCATTTTAC
73398177 CC
1 CC
73398179 CTAGGGTGTT
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 122 1.00
ACGTcount: A:0.30, C:0.24, G:0.05, T:0.40
Consensus pattern (27 bp):
CCTCGATTTACAAAATTACCATTTTAC
Found at i:73398057 original size:54 final size:54
Alignment explanation
Indices: 73397985--73398169 Score: 156
Period size: 54 Copynumber: 3.4 Consensus size: 54
73397975 ATTACCAAAG
* * * * *
73397985 TACCCCCGGTTTATAAAATTACCCAAATATCCTCGATTGACAAAATTATTATTT
1 TACCCTCGATTTACAAAATTACCCAAATACCCTCGATTGACAAAATTACTATTT
* **** * *
73398039 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAACATTACTATTT
1 TACCCTCGATTTACAAAATTACCCAAATACCCTCGATTGACAAAATTACTATTT
* * ** * * **
73398093 TACCCTCGATTTACAACATTA-CTATTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCCA-AATACCCTCGATTGACAAAATTACTATTT
* *
73398147 TACCCTCAATTTATAAAATTACC
1 TACCCTCGATTTACAAAATTACC
73398170 ATTTTACCCC
Statistics
Matches: 107, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
53 1 0.01
54 105 0.98
55 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCCAAATACCCTCGATTGACAAAATTACTATTT
Found at i:73398100 original size:81 final size:81
Alignment explanation
Indices: 73398015--73398178 Score: 247
Period size: 81 Copynumber: 2.0 Consensus size: 81
73398005 ACCCAAATAT
* * *
73398015 CCTCGATTGACAAAATTATTATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTAC
1 CCTCGATTGACAAAATTACTATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTAC
* *
73398080 AACATTACTATTTTAC
66 AAAATTACCATTTTAC
* * * *
73398096 CCTCGATTTACAACATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTAT
1 CCTCGATTGACAAAATTACTATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTAC
73398161 AAAATTACCATTTTAC
66 AAAATTACCATTTTAC
73398177 CC
1 CC
73398179 CTAGGGTGTT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.30, C:0.24, G:0.05, T:0.40
Consensus pattern (81 bp):
CCTCGATTGACAAAATTACTATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTAC
AAAATTACCATTTTAC
Found at i:73398221 original size:38 final size:38
Alignment explanation
Indices: 73398170--73398244 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
73398160 TAAAATTACC
73398170 ATTTTACCCCTAGGGTGTTAAATGATTGTTTTGCGCTA
1 ATTTTACCCCTAGGGTGTTAAATGATTGTTTTGCGCTA
73398208 ATTTTACCCCTAGGGTGTTAAATGATTGTTTTGCGCT
1 ATTTTACCCCTAGGGTGTTAAATGATTGTTTTGCGCT
73398245 TGTGGGAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.43
Consensus pattern (38 bp):
ATTTTACCCCTAGGGTGTTAAATGATTGTTTTGCGCTA
Found at i:73398604 original size:27 final size:26
Alignment explanation
Indices: 73398548--73398607 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
73398538 ATATATATAT
*
73398548 ATATCTGTTCTAGTGGCTTAGCCACA
1 ATATCTGTTCTAGTGACTTAGCCACA
* * *
73398574 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTAGTGACTTAGCCACA
73398601 ATATCTG
1 ATATCTG
73398608 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTAGTGACTTAGCCACA
Found at i:73398761 original size:31 final size:31
Alignment explanation
Indices: 73398726--73398804 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
73398716 TTGCATTCAC
* * *
73398726 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
* *
73398757 ATTCTAATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
73398788 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
73398805 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:73398774 original size:6 final size:6
Alignment explanation
Indices: 73398726--73398813 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
73398716 TTGCATTCAC
* * *
73398726 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
73398775 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
73398814 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:73400735 original size:40 final size:40
Alignment explanation
Indices: 73400698--73400799 Score: 152
Period size: 40 Copynumber: 2.5 Consensus size: 40
73400688 TGAGGAATTG
* *
73400698 TATCTGGGCTTAAAG-CCTTGCAGGCTATATGATGGAATGT
1 TATCCGGGCTTAAAGACC-CGCAGGCTATATGATGGAATGT
* *
73400738 TATCCGGGCTTAAAGACCCGTAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGATGGAATGT
73400778 TATCCGGGCTTAAAGACCCGCA
1 TATCCGGGCTTAAAGACCCGCA
73400800 AGCTTCGTGC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 54 0.96
41 2 0.04
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGATGGAATGT
Found at i:73400816 original size:40 final size:40
Alignment explanation
Indices: 73400698--73400844 Score: 129
Period size: 40 Copynumber: 3.7 Consensus size: 40
73400688 TGAGGAATTG
* * * * *
73400698 TATCTGGGCTTAAAG-CCTTGCAGGCTATATGATGGAATGT
1 TATCCGGGCTTAAAGACC-CGCAAGCTATATGCTAGAATGT
* * *
73400738 TATCCGGGCTTAAAGACCCGTAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAAGCTATATGCTAGAATGT
* *
73400778 TATCCGGGCTTAAAGACCCGCAAGCT-TCGTGCTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAAGCTAT-ATGCTAGAATGT
** * *
73400818 TATCTAGGC-TAGAGACCCGCAGGCTAT
1 TATCCGGGCTTAAAGACCCGCAAGCTAT
73400845 GAGCTGGTAT
Statistics
Matches: 91, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 15 0.16
40 74 0.81
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAAGCTATATGCTAGAATGT
Found at i:73405966 original size:39 final size:39
Alignment explanation
Indices: 73405866--73406047 Score: 220
Period size: 39 Copynumber: 4.6 Consensus size: 39
73405856 CTTTGGGACA
* * * *
73405866 TAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACT
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CT
* * *
73405906 TAACCCGGATATCACAACTCGCACAATCGCCTTCGGGCT
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCT
* *
73405945 TAGCCCGGATATCATATCTCGCACATTTGCCTTCGGGCT
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCT
* * *
73405984 TAGCCCGGATATCACAATTCGCACATTTGCCTTCGGGCT
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCT
* * *
73406023 TAGCCCAGATATCACAATTCGCACA
1 TAGCCCGGATATCATAACTCGCACA
73406048 TTCATACACA
Statistics
Matches: 126, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 96 0.76
40 30 0.24
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (39 bp):
TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCT
Found at i:73406048 original size:39 final size:39
Alignment explanation
Indices: 73405893--73406049 Score: 235
Period size: 39 Copynumber: 4.0 Consensus size: 39
73405883 CCCGCACAAA
* * *
73405893 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACATT
* *
73405933 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
73405972 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
*
73406011 TGCCTTCGGGCTTAGCCCAGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
73406050 CATACACATC
Statistics
Matches: 107, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 95 0.89
40 11 0.10
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
Found at i:73420774 original size:40 final size:40
Alignment explanation
Indices: 73420646--73420776 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
73420636 TATGCTGGAA
* * * *
73420646 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
73420686 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
73420726 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
73420766 ATTATATCCGG
1 ATTATATCCGG
73420777 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:73426709 original size:48 final size:48
Alignment explanation
Indices: 73426571--73426702 Score: 201
Period size: 48 Copynumber: 2.8 Consensus size: 48
73426561 TTAATGAGAT
**
73426571 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTG
* **
73426619 CCAATGTAAGACCATGTCTGGGACATGGCATTTGCAATGATATGTGTG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTG
* *
73426667 CTAGTGTAAGACCATGTGTGGGACATGGCATCGGCA
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
73426703 CCGATATAAG
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 74 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (48 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTG
Found at i:73426723 original size:12 final size:12
Alignment explanation
Indices: 73426706--73426739 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
73426696 ATCGGCACCG
73426706 ATATAAGACTTC
1 ATATAAGACTTC
73426718 ATATAAGACTTC
1 ATATAAGACTTC
73426730 ATATAAGACT
1 ATATAAGACT
73426740 ATATCTGGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.32
Consensus pattern (12 bp):
ATATAAGACTTC
Found at i:73428463 original size:39 final size:39
Alignment explanation
Indices: 73428349--73428569 Score: 300
Period size: 39 Copynumber: 5.6 Consensus size: 39
73428339 GTTCAAAACA
* * ** * *
73428349 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73428389 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
73428429 CCTTCGGGCTTAGCCCAGG-TATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCC-GGATATCATAACTCGCACAATTG
* *
73428468 CCTTCGGGCTTAGCTCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
73428507 CCTTCGGGCTTAGCCCGGGTATCATAACTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
73428546 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
73428570 CTCGAACATT
Statistics
Matches: 163, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
38 2 0.01
39 119 0.73
40 42 0.26
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73436685 original size:30 final size:30
Alignment explanation
Indices: 73436651--73436713 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
73436641 TCACCATTCA
* * *
73436651 TTTTCATAAATT-GATAGCTGATGCTATCCC
1 TTTTCAT-AATTCGATAGCCGAAGCTACCCC
73436681 TTTTCATAATTCGATAGCCGAAGCTACCCC
1 TTTTCATAATTCGATAGCCGAAGCTACCCC
73436711 TTT
1 TTT
73436714 AAATTGTTCG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 4 0.14
30 25 0.86
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (30 bp):
TTTTCATAATTCGATAGCCGAAGCTACCCC
Found at i:73436784 original size:30 final size:30
Alignment explanation
Indices: 73436723--73436814 Score: 96
Period size: 30 Copynumber: 3.1 Consensus size: 30
73436713 TAAATTGTTC
* * *
73436723 GATGGTCGTCACCATCCTTTTTCATTA-TT
1 GATGGTCGTCACAATCCCTTTTCATAATTT
73436752 GATGGTCGTCACAATCCCTTTTCATAATTT
1 GATGGTCGTCACAATCCCTTTTCATAATTT
* * *** *
73436782 GATAGTTGAGGCTATCCCTTTTCATAATTT
1 GATGGTCGTCACAATCCCTTTTCATAATTT
73436812 GAT
1 GAT
73436815 ACCTGAAGCT
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 24 0.45
30 29 0.55
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (30 bp):
GATGGTCGTCACAATCCCTTTTCATAATTT
Found at i:73436815 original size:30 final size:30
Alignment explanation
Indices: 73436765--73436836 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
73436755 GGTCGTCACA
** *
73436765 ATCCCTTTTCATAATTTGATAGTTGAGGCT
1 ATCCCTTTTCATAATTTGATACCTGAAGCT
73436795 ATCCCTTTTCATAATTTGATACCTGAAGCT
1 ATCCCTTTTCATAATTTGATACCTGAAGCT
*
73436825 ATCCATTTTCAT
1 ATCCCTTTTCAT
73436837 TAGTCGATGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.25, C:0.21, G:0.11, T:0.43
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATACCTGAAGCT
Found at i:73436844 original size:119 final size:120
Alignment explanation
Indices: 73436616--73436851 Score: 316
Period size: 119 Copynumber: 2.0 Consensus size: 120
73436606 AGTCGAAGCT
* * *
73436616 ATCCCTTTTCATTATTTGATGGTCGTCACCATTCATTTTCATAAATTGATAGCTGATGCTATCCC
1 ATCCCTTTTCATTATTTGATGGTCGTCACAATCCATTTTCATAAATTGATAGCTGAGGCTATCCC
* *
73436681 TTTTCATAATTCGATAGCCGAAGCTACCCCTTTAAATTGTTCGATGGTCGTCACC
66 TTTTCATAATTCGATAGCCGAAGCTACCCATTTAAATTGTTCGATGATCGTCACC
* * * *
73436736 ATCCTTTTTCATTA-TTGATGGTCGTCACAATCCCTTTTCATAATTTGATAGTTGAGGCTATCCC
1 ATCCCTTTTCATTATTTGATGGTCGTCACAATCCATTTTCATAAATTGATAGCTGAGGCTATCCC
* * **
73436800 TTTTCATAATTTGATA-CCTGAAGCTATCCATTTTCATTAG-TCGATGATCGTC
66 TTTTCATAATTCGATAGCC-GAAGCTACCCATTTAAATT-GTTCGATGATCGTC
73436852 GATACACCGT
Statistics
Matches: 101, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
118 2 0.02
119 85 0.84
120 14 0.14
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.40
Consensus pattern (120 bp):
ATCCCTTTTCATTATTTGATGGTCGTCACAATCCATTTTCATAAATTGATAGCTGAGGCTATCCC
TTTTCATAATTCGATAGCCGAAGCTACCCATTTAAATTGTTCGATGATCGTCACC
Found at i:73449968 original size:39 final size:39
Alignment explanation
Indices: 73449914--73450024 Score: 204
Period size: 39 Copynumber: 2.8 Consensus size: 39
73449904 TTCAGTGATG
73449914 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
73449953 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
73449992 TATATCCGGACTTAAGGTCCGCAGGCTACGTGC
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGC
73450025 CGAAAATATG
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:73450933 original size:37 final size:37
Alignment explanation
Indices: 73450883--73450957 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
73450873 CATATGTCAT
73450883 GACATAGGATCCGCTATGTGTTATCGTGTAAGACCAC
1 GACATAGGATCCGCTATGTGTTATCGTGTAAGACCAC
73450920 GACATAGGATCCGCTATGTGTTATCGTGTAAGACCAC
1 GACATAGGATCCGCTATGTGTTATCGTGTAAGACCAC
73450957 G
1 G
73450958 TCTGGGACAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (37 bp):
GACATAGGATCCGCTATGTGTTATCGTGTAAGACCAC
Found at i:73450992 original size:44 final size:43
Alignment explanation
Indices: 73450933--73451102 Score: 179
Period size: 44 Copynumber: 3.9 Consensus size: 43
73450923 ATAGGATCCG
* *
73450933 CTATGTGTTATCGTGTAAGACCACGTCTGGGACATTAGCATCAA
1 CTATGTTTTA-CGTGTAAGACCACGTCTGGGACATTGGCATCAA
*
73450977 CTTATGTTTTACGTGTAAGACCACGTCTGGGACGTTGGCATCATA
1 C-TATGTTTTACGTGTAAGACCACGTCTGGGACATTGGCATCA-A
* *
73451022 CT-TGATTT-CGTGTAAGACC-CTGTCTGGGACAATGGCATCAA
1 CTATGTTTTACGTGTAAGACCAC-GTCTGGGACATTGGCATCAA
* * *
73451063 -TAT-TTGATTACATGTAAGACCATGTTTGGGACATTGGCAT
1 CTATGTT--TTACGTGTAAGACCACGTCTGGGACATTGGCAT
73451103 TGTACGAGCT
Statistics
Matches: 107, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
40 2 0.02
41 3 0.03
42 30 0.28
43 30 0.28
44 32 0.30
45 10 0.09
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
CTATGTTTTACGTGTAAGACCACGTCTGGGACATTGGCATCAA
Found at i:73451047 original size:86 final size:84
Alignment explanation
Indices: 73450943--73451102 Score: 207
Period size: 85 Copynumber: 1.9 Consensus size: 84
73450933 CTATGTGTTA
* *
73450943 TCGTGTAAGACCACGTCTGGGACATTAGCATCAACTTATGTT-TTACGTGTAAGACCACGTCTGG
1 TCGTGTAAGACCACGTCTGGGACAATAGCATCAA--TAT-TTATTACATGTAAGACCACGTCTGG
*
73451007 GACGTTGGCATCATACTTGATT
63 GACATTGGCATCATACTTGATT
* * *
73451029 TCGTGTAAGACC-CTGTCTGGGACAATGGCATCAATATTTGATTACATGTAAGACCATGTTTGGG
1 TCGTGTAAGACCAC-GTCTGGGACAATAGCATCAATATTT-ATTACATGTAAGACCACGTCTGGG
73451093 ACATTGGCAT
64 ACATTGGCAT
73451103 TGTACGAGCT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
83 2 0.03
84 3 0.05
85 30 0.46
86 30 0.46
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (84 bp):
TCGTGTAAGACCACGTCTGGGACAATAGCATCAATATTTATTACATGTAAGACCACGTCTGGGAC
ATTGGCATCATACTTGATT
Done.