Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 245 of 770
Found at i:73451093 original size:43 final size:43
Alignment explanation
Indices: 73450944--73451102 Score: 182
Period size: 43 Copynumber: 3.7 Consensus size: 43
73450934 TATGTGTTAT
*
73450944 CGTGTAAGACCACGTCTGGGACATTAGCATCAACTTATGTT--TTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCAA--TAT-TTGATTA
* * *
73450988 CGTGTAAGACCACGTCTGGGACGTTGGCATC-ATACTTGATTT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCAATATTTGATTA
*
73451030 CGTGTAAGACC-CTGTCTGGGACAATGGCATCAATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCAATATTTGATTA
* * *
73451073 CATGTAAGACCATGTTTGGGACATTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
73451103 TGTACGAGCT
Statistics
Matches: 98, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
40 2 0.02
41 3 0.03
42 29 0.30
43 35 0.36
44 29 0.30
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCAATATTTGATTA
Found at i:73453085 original size:46 final size:46
Alignment explanation
Indices: 73453035--73453205 Score: 206
Period size: 46 Copynumber: 3.7 Consensus size: 46
73453025 GTTGAGCATT
73453035 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
* * * *
73453081 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG--TC
* *
73453128 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-C
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
*
73453173 CCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
73453206 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
45 8 0.08
46 54 0.51
47 28 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
Found at i:73453194 original size:93 final size:93
Alignment explanation
Indices: 73453030--73453200 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
73453020 GGATGGTTGA
* * *
73453030 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCCAACTCGTTGAGT
73453095 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
73453123 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCCAA-CTCGTTGAG
73453187 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
73453201 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73455867 original size:4 final size:4
Alignment explanation
Indices: 73455860--73455891 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
73455850 TTTTAGTTAG
*
73455860 TTTA TTTA TTTA TTTA TTTA TTTA CTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
73455892 ACCTTTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:73463402 original size:51 final size:51
Alignment explanation
Indices: 73463342--73463444 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
73463332 ATTTAGTGAA
* * *
73463342 AGAATAATTAATATTACATGTAGGAGTGTTATTGTAACACCCCTTACCCGT
1 AGAATAATTAATATTACATGTAAGAATATTATTGTAACACCCCTTACCCGT
73463393 AGAATAATTAATATTACATGTAAGAATATTATTGTAACACCCCTTACCCGT
1 AGAATAATTAATATTACATGTAAGAATATTATTGTAACACCCCTTACCCGT
73463444 A
1 A
73463445 TTCAACGCTG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (51 bp):
AGAATAATTAATATTACATGTAAGAATATTATTGTAACACCCCTTACCCGT
Found at i:73469155 original size:40 final size:40
Alignment explanation
Indices: 73469096--73469303 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
73469086 CAATTGAATG
* * * *
73469096 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
73469136 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
73469176 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
73469216 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
73469256 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
73469296 ATATCCGG
1 ATATCCGG
73469304 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:73469234 original size:80 final size:80
Alignment explanation
Indices: 73469098--73469303 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
73469088 ATTGAATGAT
* * ** * * *
73469098 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
73469162 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
73469178 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
73469243 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
73469258 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
73469304 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:73473570 original size:40 final size:40
Alignment explanation
Indices: 73473478--73473627 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
73473468 AATTGAATGA
* * * *
73473478 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAAT-T
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * *
73473517 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
73473558 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
73473597 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
73473628 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 3 0.03
39 31 0.34
40 54 0.59
41 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:73473641 original size:40 final size:40
Alignment explanation
Indices: 73473517--73473643 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
73473507 GCTGGAAATT
* * * * *
73473517 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
73473557 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
73473597 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
73473637 TATCCGG
1 TATCCGG
73473644 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:73480419 original size:40 final size:40
Alignment explanation
Indices: 73480347--73480553 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
73480337 CAATTGAATG
* * ** *
73480347 ATATCC-GGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
73480386 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
73480426 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
73480466 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
73480506 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
73480546 ATATCCGG
1 ATATCCGG
73480554 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 10 0.07
40 126 0.90
41 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:73480486 original size:80 final size:80
Alignment explanation
Indices: 73480388--73480553 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 80
73480378 TAGTAATTAT
* *
73480388 ATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGT-GACCACATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTCGACC-CATCCGGGCTAAGACCCGAAGGCA
*
73480451 TTCGTGCAAGTTGTTAA
64 TTCGTGCAAGTGGTTAA
* ** *
73480468 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
* *
73480533 CGTGCATGTGGTTAT
66 CGTGCAAGTGGTTAA
73480548 ATCCGG
1 ATCCGG
73480554 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 2 0.03
80 71 0.95
81 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:73487937 original size:24 final size:24
Alignment explanation
Indices: 73487898--73487951 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
73487888 CCGGTTAGGT
* * *
73487898 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
73487922 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
73487946 TCCCGG
1 TCCCGG
73487952 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:73488061 original size:57 final size:59
Alignment explanation
Indices: 73487985--73488104 Score: 172
Period size: 58 Copynumber: 2.1 Consensus size: 59
73487975 CCCTCCCCAA
* *
73487985 TCCCAAAAGGTAGAATTCGGACA-CGTTACATGTTCGGTACCCAATAACGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGACACCGTTACATGTCCGGTACCCAACAACGAATGAATCG
* * * *
73488043 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGACACCGTTACATGTCCGGTACCCAACAACGAATGAATCG
73488101 TCCC
1 TCCC
73488105 TGTCCCTCCC
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 16 0.29
58 39 0.71
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.23
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGACACCGTTACATGTCCGGTACCCAACAACGAATGAATCG
Found at i:73494559 original size:24 final size:24
Alignment explanation
Indices: 73494532--73494585 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
73494522 CCGGTTAGGT
*
73494532 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
73494556 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
73494580 TCCCGG
1 TCCCGG
73494586 AATATCGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.07, C:0.43, G:0.35, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:73499596 original size:19 final size:20
Alignment explanation
Indices: 73499565--73499604 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
73499555 TAAAAATCGG
73499565 TAAATAATATTTTTGA-AAA
1 TAAATAATATTTTTGAGAAA
73499584 TAAA-AATATTTTTTGAGAAA
1 TAAATAATA-TTTTTGAGAAA
73499604 T
1 T
73499605 CAGTTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 11 0.58
20 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.42
Consensus pattern (20 bp):
TAAATAATATTTTTGAGAAA
Found at i:73499795 original size:133 final size:133
Alignment explanation
Indices: 73499558--73499855 Score: 448
Period size: 133 Copynumber: 2.3 Consensus size: 133
73499548 TTTCATTTAA
* *** *
73499558 AAATCGGTAAATAATATTTTTGAAAATAAAAATATTTTTTGAGAAATC------A-GTTTTTAAA
1 AAATAGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAA
*
73499616 TATTTTTTGGTTAGATTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTA
66 TATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTA
73499681 ACT
131 ACT
* *
73499684 AAATAGGTAAATAATATTCCGGGAAATATAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAA
1 AAATAGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAA
* *
73499749 TATTTTTTGTTTAGAGTAAATATTTTATTGAAAAATAATTTCAAATGGAGAGAATTACAATATTA
66 TATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTA
73499814 ACT
131 ACT
*
73499817 AAATAGGTAAATAATATTTCGGAAAATAAAAATATTTTT
1 AAATAGGTAAATAATATTCCGGAAAATAAAAATATTTTT
73499856 AGAAATATAT
Statistics
Matches: 152, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
126 42 0.28
132 1 0.01
133 109 0.72
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.40
Consensus pattern (133 bp):
AAATAGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAA
TATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTA
ACT
Found at i:73500925 original size:133 final size:133
Alignment explanation
Indices: 73500487--73500919 Score: 735
Period size: 133 Copynumber: 3.2 Consensus size: 133
73500477 TAAAAATCGA
* *
73500487 TAAATAATATT-TCCGAAAATAAAAATATTTTTTGAGAAATCAGTTTTATGGTTTTAAATATTTT
1 TAAATAATATTCT-GGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAATATTTT
*
73500551 TTGGTTAGAGTAAA-ATTTTATTGAAAAAATAATTTAAAATGGAGAGAATTACAATATTAACTAA
65 TTGTTTAGAGTAAATATTTTATTG-AAAAATAATTTAAAATGGAGAGAATTACAATATTAACTAA
73500615 ATAGG
129 ATAGG
* * *
73500620 TAAATAATATTCCGGGAAATATAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTT
1 TAAATAATATTCTGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTT
73500685 TGTTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTAACTAAAT
66 TGTTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTAACTAAAT
73500750 AGG
131 AGG
* *
73500753 TAAATAATATTCTGGGAAATATAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTT
1 TAAATAATATTCTGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAATA-TTTT
73500818 TTGTTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAAGTTACAATATTAACTAA
65 TTGTTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAA-TTACAATATTAACTAA
73500883 ATAGG
129 ATAGG
*
73500888 TAAATCATATTCTGGAAAATAAAAATATTTTT
1 TAAATAATATTCTGGAAAATAAAAATATTTTT
73500920 AGAAATATAT
Statistics
Matches: 286, Mismatches: 10, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
133 175 0.61
134 61 0.21
135 50 0.17
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.40
Consensus pattern (133 bp):
TAAATAATATTCTGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTT
TGTTTAGAGTAAATATTTTATTGAAAAATAATTTAAAATGGAGAGAATTACAATATTAACTAAAT
AGG
Found at i:73501184 original size:83 final size:83
Alignment explanation
Indices: 73501041--73501194 Score: 299
Period size: 83 Copynumber: 1.9 Consensus size: 83
73501031 ACCACCAAAT
*
73501041 TCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGC
1 TCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACATGTAATCGC
73501106 AAATTTGACTCAACACGG
66 AAATTTGACTCAACACGG
73501124 TCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACATGTAATCGC
1 TCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACATGTAATCGC
73501189 AAATTT
66 AAATTT
73501195 TCCAAAGTAT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 70 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (83 bp):
TCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACATGTAATCGC
AAATTTGACTCAACACGG
Found at i:73508427 original size:47 final size:47
Alignment explanation
Indices: 73508376--73508480 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
73508366 TAGTATTAAT
*
73508376 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
73508423 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
73508470 AATGTGATAAG
1 TATGTGATAAG
73508481 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:73519330 original size:13 final size:13
Alignment explanation
Indices: 73519312--73519336 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73519302 TCCACACCAA
73519312 TATCATATTTGTC
1 TATCATATTTGTC
73519325 TATCATATTTGT
1 TATCATATTTGT
73519337 TAACCTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.56
Consensus pattern (13 bp):
TATCATATTTGTC
Found at i:73520298 original size:45 final size:45
Alignment explanation
Indices: 73520226--73520316 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
73520216 CCAAAACATG
* * * *
73520226 TGTCATATATATCACGAGCTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATAAATCACGAACTCAAACCACAACTCAATGAGTTCAGA
*
73520271 TGTCACATAAATCATGAACTCAAACCACAACTCAATGAGTTCAGA
1 TGTCACATAAATCACGAACTCAAACCACAACTCAATGAGTTCAGA
73520316 T
1 T
73520317 CACATATTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.24
Consensus pattern (45 bp):
TGTCACATAAATCACGAACTCAAACCACAACTCAATGAGTTCAGA
Found at i:73520320 original size:21 final size:21
Alignment explanation
Indices: 73520245--73520320 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
73520235 TATCACGAGC
73520245 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* * **
73520266 TCAGATGTCACATAAATC-ATGAAC
1 TCAGA---C-CACAACTCAATGAGT
*
73520290 TCAAACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
*
73520311 TCAGATCACA
1 TCAGACCACA
73520321 TATTTCCTAG
Statistics
Matches: 39, Mismatches: 11, Indels: 10
0.65 0.18 0.17
Matches are distributed among these distances:
20 6 0.15
21 18 0.46
24 9 0.23
25 6 0.15
ACGTcount: A:0.41, C:0.26, G:0.12, T:0.21
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:73522175 original size:45 final size:45
Alignment explanation
Indices: 73522120--73522210 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
73522110 CCAAAACATG
* *
73522120 TGTCATATATATCACAAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTCAGA
**
73522165 TGTCACATATATCATGAACTCAAACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTCAGA
73522210 T
1 T
73522211 CACATAGTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.40, C:0.24, G:0.11, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTCAGA
Found at i:73522214 original size:21 final size:21
Alignment explanation
Indices: 73522139--73522214 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
73522129 TATCACAAAC
73522139 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* * **
73522160 TCAGATGTCACATATATC-ATGAAC
1 TCAGA--CCACA-A-CTCAATGAGT
*
73522184 TCAAACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
*
73522205 TCAGATCACA
1 TCAGACCACA
73522215 TAGTTCCTAG
Statistics
Matches: 39, Mismatches: 11, Indels: 10
0.65 0.18 0.17
Matches are distributed among these distances:
20 2 0.05
21 18 0.46
22 4 0.10
23 4 0.10
24 9 0.23
25 2 0.05
ACGTcount: A:0.39, C:0.26, G:0.12, T:0.22
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:73524826 original size:21 final size:21
Alignment explanation
Indices: 73524774--73524828 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
73524764 ACACAGTTTT
* *
73524774 CTCACACGACCATGTGACCTA
1 CTCACACGACCATATGACCCA
* *
73524795 -TCCATATGACCATATGACCCA
1 CT-CACACGACCATATGACCCA
73524816 CTCACACGACCAT
1 CTCACACGACCAT
73524829 GTGGCCTATC
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
20 1 0.04
21 24 0.92
22 1 0.04
ACGTcount: A:0.31, C:0.38, G:0.11, T:0.20
Consensus pattern (21 bp):
CTCACACGACCATATGACCCA
Found at i:73528092 original size:22 final size:22
Alignment explanation
Indices: 73528050--73528093 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
73528040 AAAGGACCAA
*
73528050 TTTGTAAAAATGTTATAAAATG
1 TTTGTAAAAATGTGATAAAATG
* *
73528072 TTTGTAAAAGTGTGATTAAATG
1 TTTGTAAAAATGTGATAAAATG
73528094 AAAAATGTGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (22 bp):
TTTGTAAAAATGTGATAAAATG
Found at i:73536182 original size:43 final size:42
Alignment explanation
Indices: 73536126--73536241 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 42
73536116 GAAAGCACCA
*
73536126 CTAAAGAAAGTGACCTTTAGCGGTG-TCTTTCACACAAATACCG
1 CTAAA-AAAGTGACCTTTAGCGGCGCT-TTTCACACAAATACCG
* * **
73536169 CTAAAAAATGTGACATTTAGCGGCGCTTTTCATACAAATGTCG
1 CTAAAAAA-GTGACCTTTAGCGGCGCTTTTCACACAAATACCG
*
73536212 CTAAAGAACA-TGACCTTTAGCAGCGCTTTT
1 CTAAA-AA-AGTGACCTTTAGCGGCGCTTTT
73536242 ACATGAACGC
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
42 3 0.05
43 55 0.89
44 3 0.05
45 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (42 bp):
CTAAAAAAGTGACCTTTAGCGGCGCTTTTCACACAAATACCG
Found at i:73542175 original size:2 final size:2
Alignment explanation
Indices: 73542163--73542200 Score: 67
Period size: 2 Copynumber: 18.5 Consensus size: 2
73542153 GTAAGTTATG
73542163 AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73542201 AGTTATTAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 33 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:73542924 original size:5 final size:5
Alignment explanation
Indices: 73542914--73542950 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
73542904 CATAATGTGA
73542914 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
73542951 GAACACACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:73542934 original size:15 final size:14
Alignment explanation
Indices: 73542914--73542950 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
73542904 CATAATGTGA
73542914 AAAATAAAATAAAAT
1 AAAATAAAAT-AAAT
73542929 AAAATAAAATAAAT
1 AAAATAAAATAAAT
73542943 AAAATAAA
1 AAAATAAA
73542951 GAACACACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:73547381 original size:5 final size:5
Alignment explanation
Indices: 73547371--73547398 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
73547361 CAATTTGTGA
73547371 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
73547399 GAACACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:73550411 original size:43 final size:43
Alignment explanation
Indices: 73550358--73550462 Score: 183
Period size: 43 Copynumber: 2.4 Consensus size: 43
73550348 GGTTTAATCT
73550358 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTA
* *
73550401 ATTGGTACTAAGTGTGCGATACAATTATAGCTTCGGTTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTA
*
73550444 ATTAGCACTAAGTGTGCGA
1 ATTGGCACTAAGTGTGCGA
73550463 GTTTATTGAA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.33
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTA
Found at i:73553148 original size:20 final size:20
Alignment explanation
Indices: 73553123--73553162 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
73553113 ATTGGGTCTT
73553123 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTTGG
*
73553143 GCCCATTTCAATACAGTTGG
1 GCCCATTTCAACACAGTTGG
73553163 CCTATAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (20 bp):
GCCCATTTCAACACAGTTGG
Found at i:73555443 original size:3 final size:3
Alignment explanation
Indices: 73555437--73555472 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
73555427 ATTTAAAAAA
* *
73555437 AAT AAT AAT AAT AAT AAT AAT AAT AAC CAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
73555473 GAAGATTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:73556154 original size:18 final size:17
Alignment explanation
Indices: 73556102--73556152 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 17
73556092 AACAGATGGG
73556102 TTTGATTTGGGGAAAAT
1 TTTGATTTGGGGAAAAT
73556119 TTAATG-TTTAGGGG-AAAT
1 TT--TGATTT-GGGGAAAAT
73556137 TTTGATTTGGGGAAAA
1 TTTGATTTGGGGAAAA
73556153 ATAAGGGGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
16 6 0.21
17 8 0.28
18 9 0.31
19 6 0.21
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.39
Consensus pattern (17 bp):
TTTGATTTGGGGAAAAT
Found at i:73556330 original size:41 final size:41
Alignment explanation
Indices: 73556281--73556449 Score: 198
Period size: 41 Copynumber: 4.1 Consensus size: 41
73556271 TTTGCAGCAG
* * * * *
73556281 TTTT-AAAAATGCACAGCTAATTCTCGATCTTTAGCGGTGC
1 TTTTCAAAAAAGCACCGCTAATTCTCGATCTTTAGCAGCGT
* *
73556321 TTTTCAAAAAAGCGA-TGCTAATTCTCAATCTTTAGCAGCGT
1 TTTTCAAAAAAGC-ACCGCTAATTCTCGATCTTTAGCAGCGT
*
73556362 TTTTCAAAAAAGCGCCGCTAATTCTCGATCTTTAGCAGCGT
1 TTTTCAAAAAAGCACCGCTAATTCTCGATCTTTAGCAGCGT
* * * * *
73556403 TTTTCAAAAAAACGCCGGTAATTCTCGATCTTTAGCGGCAT
1 TTTTCAAAAAAGCACCGCTAATTCTCGATCTTTAGCAGCGT
73556444 TTTTCA
1 TTTTCA
73556450 GAAAGCGCCA
Statistics
Matches: 113, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
40 4 0.04
41 108 0.96
42 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.34
Consensus pattern (41 bp):
TTTTCAAAAAAGCACCGCTAATTCTCGATCTTTAGCAGCGT
Found at i:73556382 original size:82 final size:81
Alignment explanation
Indices: 73556274--73556464 Score: 222
Period size: 82 Copynumber: 2.3 Consensus size: 81
73556264 TAAACTTTTT
* * * * * * *
73556274 GCAGCAGTTTT-AAAAATGCACAGCTAATTCTCGATCTTTAGCGGTGCTTTTCAAAAAAGCGATG
1 GCAGCATTTTTCAAAAA-GCGCCGCTAATTCTCGATCTTTAGCAGCGCTTTTCAAAAAAACGACG
73556338 CTAATTCTCAATCTTTA
65 CTAATTCTCAATCTTTA
* * *
73556355 GCAGCGTTTTTCAAAAAAGCGCCGCTAATTCTCGATCTTTAGCAGCGTTTTTCAAAAAAACGCCG
1 GCAGCATTTTTC-AAAAAGCGCCGCTAATTCTCGATCTTTAGCAGCGCTTTTCAAAAAAACGACG
* *
73556420 GTAATTCTCGATCTTTA
65 CTAATTCTCAATCTTTA
* * *
73556437 GCGGCATTTTTCAGAAAGCGCCACTAAT
1 GCAGCATTTTTCAAAAAGCGCCGCTAAT
73556465 ACCACTAGAG
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
81 23 0.25
82 64 0.70
83 5 0.05
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (81 bp):
GCAGCATTTTTCAAAAAGCGCCGCTAATTCTCGATCTTTAGCAGCGCTTTTCAAAAAAACGACGC
TAATTCTCAATCTTTA
Found at i:73556869 original size:22 final size:22
Alignment explanation
Indices: 73556823--73556869 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
73556813 TCAAAATCTA
* *
73556823 TAACCCTTAAACCCTAATACGC
1 TAACCCTTAAACCATAATACAC
73556845 TAACCCTTAAAACCATAA-ACAC
1 TAACCCTT-AAACCATAATACAC
73556867 TAA
1 TAA
73556870 GACCCTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.45, C:0.32, G:0.02, T:0.21
Consensus pattern (22 bp):
TAACCCTTAAACCATAATACAC
Found at i:73557531 original size:41 final size:41
Alignment explanation
Indices: 73557466--73557756 Score: 298
Period size: 41 Copynumber: 7.1 Consensus size: 41
73557456 TTGAAAATGG
* * * **
73557466 TTGCTCAACTTTTTA-TGGCTTTTGGACCAGAAACACCGCTA
1 TTGCTC-AGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
* * *
73557507 TTGCTCAATTTTTAGCGGCGTTTGGACCAAAAATGCCACTA
1 TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
* * *** * *
73557548 TT-CTTAGTTTTTTGCCTCGTTTGTACCAAAAATGCCTCTA
1 TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
* * * * *
73557588 TTGTTTAGTTTTTAGTGGTGTTTGGACCAAAAACGCCACTA
1 TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
* * * *
73557629 TTGTTCAGTTTTTAGCGGCATTTGGAACAAAAATGCCGCTA
1 TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
* *
73557670 TTGCTCAGTTTTTAGTGGCGTTTGGACAAAAAATGCCGTTA
1 TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
* * *
73557711 TTGCTCAGTTTTTAGTGGCGTTTGGACTAGAAACGCCGCTA
1 TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
73557752 TTGCT
1 TTGCT
73557757 ATAACATACC
Statistics
Matches: 208, Mismatches: 40, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
40 40 0.19
41 168 0.81
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (41 bp):
TTGCTCAGTTTTTAGTGGCGTTTGGACCAAAAATGCCGCTA
Found at i:73561809 original size:25 final size:25
Alignment explanation
Indices: 73561707--73561869 Score: 65
Period size: 25 Copynumber: 6.6 Consensus size: 25
73561697 CTGTAAATGG
*
73561707 GAAGCTCA-AGAGAGCCAAAT-TCGA
1 GAAGCTCATA-AGAGCCAATTATCGA
***
73561731 GAAGCTCATGCTAGCCAA-TATC-A
1 GAAGCTCATAAGAGCCAATTATCGA
**
73561754 GGAAGCTTC-GGAGAGCC-ATTAATC-A
1 -GAAGC-TCATAAGAGCCAATT-ATCGA
73561779 GTAAGCTCATAAGAGCCAATTATCGA
1 G-AAGCTCATAAGAGCCAATTATCGA
** * * *
73561805 GAAGCTCCGGAA-ATTCAAATAAT-GA
1 GAAGCT-CATAAGA-GCCAATTATCGA
* * * *
73561830 GAAGCTCGTGAGAGCCAAATATCAA
1 GAAGCTCATAAGAGCCAATTATCGA
73561855 GAAGCTCATAAGAGC
1 GAAGCTCATAAGAGC
73561870 TGTGGCCTGT
Statistics
Matches: 103, Mismatches: 22, Indels: 27
0.68 0.14 0.18
Matches are distributed among these distances:
23 3 0.03
24 38 0.37
25 48 0.47
26 14 0.14
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (25 bp):
GAAGCTCATAAGAGCCAATTATCGA
Found at i:73566306 original size:96 final size:96
Alignment explanation
Indices: 73566140--73566333 Score: 307
Period size: 96 Copynumber: 2.0 Consensus size: 96
73566130 GTGTCTGAGG
* * * * * *
73566140 AAGTCTGTTATCGATGGGAATGATCGAGTAGATACGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATCGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
73566205 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
*
73566236 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATCGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
* *
73566301 TAAAGCCGAAGCCAAGAGGGCTAAGAGGAGC
66 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
73566332 AA
1 AA
73566334 AAAGAAGCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 89 1.00
ACGTcount: A:0.35, C:0.18, G:0.35, T:0.13
Consensus pattern (96 bp):
AAGTCTGTCATCGAAGGGAACGATCGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
Found at i:73570328 original size:18 final size:18
Alignment explanation
Indices: 73570270--73570421 Score: 193
Period size: 17 Copynumber: 8.5 Consensus size: 18
73570260 ATGGAAATAT
* *
73570270 AATCTTAGATATTATATGC
1 AATCTTAGATATGAT-TAC
*
73570289 AATCTTAAATATGA-TAC
1 AATCTTAGATATGATTAC
*
73570306 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
* *
73570324 AATCTCAGATATGATTGC
1 AATCTTAGATATGATTAC
73570342 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
73570359 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
73570376 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
*
73570394 AATCTTAGACATGATATAC
1 AATCTTAGATATGAT-TAC
73570413 AATCTTAGA
1 AATCTTAGA
73570422 AGATATGATT
Statistics
Matches: 119, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
17 48 0.40
18 48 0.40
19 23 0.19
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:73570375 original size:70 final size:72
Alignment explanation
Indices: 73570270--73570421 Score: 236
Period size: 70 Copynumber: 2.1 Consensus size: 72
73570260 ATGGAAATAT
* *
73570270 AATCTTAGATATTATATGCAATCTTAAATATGATACAATCTTAGATATGATTGCAATCTCAGATA
1 AATCTTAGATATGATA-GCAATCTTAAATATGATACAATCTTAGATATGATTGCAATCTCAGACA
*
73570335 TGAT-TGC
65 TGATATAC
* *
73570342 AATCTTAGATATGATA-CAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGACAT
1 AATCTTAGATATGATAGCAATCTTAAATATGATACAATCTTAGATATGATTGCAATCTCAGACAT
73570406 GATATAC
66 GATATAC
73570413 AATCTTAGA
1 AATCTTAGA
73570422 AGATATGATT
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
70 48 0.65
71 11 0.15
72 15 0.20
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (72 bp):
AATCTTAGATATGATAGCAATCTTAAATATGATACAATCTTAGATATGATTGCAATCTCAGACAT
GATATAC
Found at i:73570926 original size:17 final size:16
Alignment explanation
Indices: 73570902--73570956 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
73570892 TAAACCAATA
73570902 TATTTTATATAATTAT
1 TATTTTATATAATTAT
73570918 TATTCTTATA-AATATAT
1 TATT-TTATATAAT-TAT
*
73570935 TTTTATTATAT-ATTA-
1 TATT-TTATATAATTAT
73570950 TATTTTA
1 TATTTTA
73570957 AATTTATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
14 3 0.09
15 3 0.09
16 9 0.27
17 18 0.55
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTTTATATAATTAT
Found at i:73570980 original size:26 final size:25
Alignment explanation
Indices: 73570933--73570981 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
73570923 TTATAAATAT
* * *
73570933 ATTTTTATTATATATTATATTTTAA
1 ATTTTTATTAAATATCACATTTTAA
73570958 ATTTATTATTAAATATCACATTTT
1 ATTT-TTATTAAATATCACATTTT
73570982 TATATGCTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTATTAAATATCACATTTTAA
Found at i:73572881 original size:21 final size:18
Alignment explanation
Indices: 73572843--73572885 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 18
73572833 AACTCTAAAA
73572843 AAAAACCAGAAATATAATT
1 AAAAACCAGAAATATAA-T
*
73572862 AAAAACCATAAATTACTAAT
1 AAAAACCAGAAA-TA-TAAT
73572882 AAAA
1 AAAA
73572886 TAGTTCTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 11 0.52
20 7 0.33
21 3 0.14
ACGTcount: A:0.65, C:0.12, G:0.02, T:0.21
Consensus pattern (18 bp):
AAAAACCAGAAATATAAT
Found at i:73573284 original size:23 final size:23
Alignment explanation
Indices: 73573242--73573285 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
73573232 AGATATTTTA
* *
73573242 CAGTCAAGATGCTAGTATATATG
1 CAGTCAAGATGCCAGAATATATG
*
73573265 CAGTCAAGCTGCCAGAATATA
1 CAGTCAAGATGCCAGAATATA
73573286 GGTGATATGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (23 bp):
CAGTCAAGATGCCAGAATATATG
Found at i:73580989 original size:20 final size:21
Alignment explanation
Indices: 73580953--73580991 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
73580943 GTTTTTTGGG
*
73580953 GAAAAAGAGAAATTAAAATTT
1 GAAAAAAAGAAATTAAAATTT
73580974 GAAAAAAAGAAA-TAAAAT
1 GAAAAAAAGAAATTAAAAT
73580992 CCCAGATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.69, C:0.00, G:0.13, T:0.18
Consensus pattern (21 bp):
GAAAAAAAGAAATTAAAATTT
Found at i:73581652 original size:20 final size:20
Alignment explanation
Indices: 73581614--73581653 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
73581604 ATTTAATAAA
***
73581614 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAAAAAAAAAC
73581634 TAAAAATAAAAAAAAAAAAC
1 TAAAAATAAAAAAAAAAAAC
73581654 ATATAATTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (20 bp):
TAAAAATAAAAAAAAAAAAC
Found at i:73581718 original size:18 final size:18
Alignment explanation
Indices: 73581671--73581746 Score: 59
Period size: 18 Copynumber: 4.3 Consensus size: 18
73581661 TTTATACAAA
* *
73581671 TAATTTGGTTAATT-TGG
1 TAATTCGGTTAATTCAGG
*
73581688 TTATTCGAG-TAATTCAGG
1 TAATTCG-GTTAATTCAGG
*
73581706 TAATTCGGTTAATTC-GAT
1 TAATTCGGTTAATTCAG-G
* *
73581724 TAATTCGATTAATTCAGT
1 TAATTCGGTTAATTCAGG
73581742 TAATT
1 TAATT
73581747 TTATACTTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
17 12 0.25
18 35 0.73
19 1 0.02
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (18 bp):
TAATTCGGTTAATTCAGG
Found at i:73581727 original size:27 final size:27
Alignment explanation
Indices: 73581680--73581746 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
73581670 ATAATTTGGT
*
73581680 TAATTTGGTT-ATTCGAGTAATTC-AGG
1 TAATTCGGTTAATTCGAGTAATTCGA-G
* *
73581706 TAATTCGGTTAATTCGATTAATTCGAT
1 TAATTCGGTTAATTCGAGTAATTCGAG
*
73581733 TAATTCAGTTAATT
1 TAATTCGGTTAATT
73581747 TTATACTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 9 0.26
27 25 0.71
28 1 0.03
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (27 bp):
TAATTCGGTTAATTCGAGTAATTCGAG
Found at i:73584022 original size:2 final size:2
Alignment explanation
Indices: 73584015--73584047 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
73584005 AATTGATAGA
73584015 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73584048 GTGGGTTCGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73584117 original size:29 final size:29
Alignment explanation
Indices: 73584078--73584157 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
73584068 CTTAATAATC
*
73584078 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
73584108 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
73584137 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
73584158 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:73584628 original size:2 final size:2
Alignment explanation
Indices: 73584623--73584656 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
73584613 TCACACATGC
73584623 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73584657 GGCCAAATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73597043 original size:30 final size:30
Alignment explanation
Indices: 73597009--73597068 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
73596999 ATTTAATACG
73597009 AACTTTAGAAAAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
* * *
73597039 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
73597069 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTAGAAAAATTACACTTTTGCCCCTA
Found at i:73599321 original size:27 final size:26
Alignment explanation
Indices: 73599291--73599395 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 26
73599281 CCCTGTTTAG
* * *
73599291 AATACTTTAGTTTACTAAAATTACCGA
1 AATACCTTAGTTT-GTAAAATTACTGA
*
73599318 AATACCCTTAGTTTGTAAAAATACTGA
1 AATA-CCTTAGTTTGTAAAATTACTGA
*
73599345 AATACCTTCGATTTGTAAAATTACTGA
1 AATACCTTAG-TTTGTAAAATTACTGA
* *
73599372 AATACCTTCGACTTGTAAAATTAC
1 AATACCTTAG-TTTGTAAAATTAC
73599396 CAAAGTTCCC
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.07
27 56 0.81
28 8 0.12
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (26 bp):
AATACCTTAGTTTGTAAAATTACTGA
Found at i:73599364 original size:26 final size:27
Alignment explanation
Indices: 73599306--73599395 Score: 128
Period size: 27 Copynumber: 3.3 Consensus size: 27
73599296 TTTAGTTTAC
* *
73599306 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
*
73599333 TAAAAATACTGAAATACCTTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
73599360 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
73599387 TAAAATTAC
1 TAAAATTAC
73599396 CAAAGTTCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 5 0.09
27 52 0.91
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:73599612 original size:27 final size:27
Alignment explanation
Indices: 73599407--73599611 Score: 293
Period size: 27 Copynumber: 7.6 Consensus size: 27
73599397 AAAGTTCCCC
* *
73599407 CGATTTATAGAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
73599434 CGATTTACATAATTACTGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
*
73599461 CGATTTACATAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
73599488 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73599515 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
73599542 CAATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73599569 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73599596 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
73599612 TAAAATACCC
Statistics
Matches: 162, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 162 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:73599620 original size:27 final size:27
Alignment explanation
Indices: 73599455--73599729 Score: 122
Period size: 27 Copynumber: 10.2 Consensus size: 27
73599445 ATTACTGTTT
* * ****
73599455 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* ****
73599482 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* ***
73599509 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * *****
73599536 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * *****
73599563 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
*
73599590 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
73599617 TACCCT-TAGTTTGCAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* **
73599644 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* * ***
73599671 TACCCTTGGTTTGTGAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
73599698 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
73599725 TACCC
1 TACCC
73599730 CTAATTTACA
Statistics
Matches: 217, Mismatches: 28, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
26 1 0.00
27 216 1.00
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:73599637 original size:81 final size:81
Alignment explanation
Indices: 73599407--73599639 Score: 279
Period size: 81 Copynumber: 2.9 Consensus size: 81
73599397 AAAGTTCCCC
* * * * * *
73599407 CGATTTATAGAATTACCGTTTTACCCCCGATTTACATAATTACTGTTTTACCC-CCGATTTACAT
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAG-TTTACAA
73599471 AATTACCGTTTTACCCT
65 AATTACCGTTTTACCCT
* * * * *
73599488 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTATAGA
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAGTTTACAAA
*
73599553 ATTACTGTTTTACCCT
66 ATTACCGTTTTACCCT
* * *** * *
73599569 TGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGCAAA
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAGTTTACAAA
73599634 ATTACC
66 ATTACC
73599640 AAAATACCCC
Statistics
Matches: 128, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
81 127 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (81 bp):
CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAGTTTACAAA
ATTACCGTTTTACCCT
Found at i:73599648 original size:54 final size:55
Alignment explanation
Indices: 73599590--73599813 Score: 172
Period size: 54 Copynumber: 4.1 Consensus size: 55
73599580 ATTACTGTTT
* * *
73599590 TACCCTCGA-TTTACAAAATTACTAAAATACCCTTAGTTTGCAAAATTACCAAAA
1 TACCCTCGACTTTGCAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAA
* * * * ***
73599644 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCAAAA
1 TACCCTCGACTTTGCAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAA
* * * * * *
73599698 TACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTACAAAGTT-GCAGAAA
1 TACCCTCGACTTTGCAAAATTACCAAAATACCCTTAGTTTACAAAATTACCA-AAA
* * * * **
73599752 TACCCTTGACTTT-CTAAAAATTA-TAGAAATACCATTAGTTTACAAGATTACTGAAA
1 TACCCTCGACTTTGC--AAAATTACCA-AAATACCCTTAGTTTACAAAATTACCAAAA
73599808 TACCCT
1 TACCCT
73599814 TGGTTTGTAG
Statistics
Matches: 134, Mismatches: 28, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
53 4 0.03
54 90 0.67
55 6 0.04
56 34 0.25
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (55 bp):
TACCCTCGACTTTGCAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAA
Found at i:73599648 original size:81 final size:81
Alignment explanation
Indices: 73599388--73599729 Score: 220
Period size: 81 Copynumber: 4.2 Consensus size: 81
73599378 TTCGACTTGT
* * * * * * ***
73599388 AAAATTACCAAAGTTCCCCCGATTTATAGAATTACCGTTTTACCCCCGATTTACATAATTACTGT
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAA
** * *
73599453 TTTACCCCCGATTTAC
66 AATACCCTCAATTTAC
* **** * *
73599469 ATAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCAT
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAA
** *
73599534 TTTACCCTCAATTTAT
66 AATACCCTCAATTTAC
* ***** * * *
73599550 AGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAA
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAA
* * *
73599615 AATACCCTTAGTTTGC
66 AATACCCTCAATTTAC
* * **** * * ***
73599631 AAAATTACCAAAATACCCCTAGTTTGTA-A-AATTACCAAAATACCCTTGGTTTGTGAAATTACC
1 AAAATTACCAAAATA-CCCTCGATT-TACAGAATTACCGTTTTACCCTCGATTTACAAAATTACC
**
73599694 AAAATACCCTCAATTTGT
64 AAAATACCCTCAATTTAC
73599712 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
73599730 CTAATTTACA
Statistics
Matches: 209, Mismatches: 50, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
80 3 0.01
81 196 0.94
82 8 0.04
83 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.35
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAA
AATACCCTCAATTTAC
Found at i:73599736 original size:27 final size:27
Alignment explanation
Indices: 73599604--73599732 Score: 179
Period size: 27 Copynumber: 4.8 Consensus size: 27
73599594 CTCGATTTAC
* * *
73599604 AAAATTACTAAAATACCCTTAGTTTGC
1 AAAATTACCAAAATACCCCTAGTTTGT
73599631 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
73599658 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
73599685 GAAATTACCAAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-AGTTTGT
73599712 AAAATTACCAAAATACCCCTA
1 AAAATTACCAAAATACCCCTA
73599733 ATTTACAAAG
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
26 3 0.03
27 83 0.92
28 4 0.04
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:73599753 original size:81 final size:81
Alignment explanation
Indices: 73599605--73599759 Score: 213
Period size: 81 Copynumber: 1.9 Consensus size: 81
73599595 TCGATTTACA
* * * * **
73599605 AAATTACTAAAATACCCTTAGTTTGCAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTCAATTTGCAAAATTACCAAAATACCCCTAATTTACAAAATTACCAAA
73599670 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
* * *
73599686 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAGTT-GCAGA
1 AAATTACCAAAATACCCTCAATTTGCAAAATTACCAAAATACCCCTAATTTACAAAATTACCA-A
73599750 AATACCCTTG
65 AATACCCTTG
73599760 ACTTTCTAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
80 2 0.03
81 62 0.97
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGCAAAATTACCAAAATACCCCTAATTTACAAAATTACCAAA
ATACCCTTGGTTTGTG
Found at i:73599900 original size:26 final size:27
Alignment explanation
Indices: 73599860--73599933 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
73599850 AAATGTCTAA
*
73599860 AATACCTCTATTA-GGTAAAAAGACCGT
1 AATACCCCTA-TAGGGTAAAAAGACCGT
**
73599887 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATAGGGTAAAAAGACCGT
* *
73599914 AATACCCCTGTATGGTAAAA
1 AATACCCCTATAGGGTAAAA
73599934 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAAAGACCGT
Found at i:73599921 original size:27 final size:27
Alignment explanation
Indices: 73599873--73599937 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
73599863 ACCTCTATTA
*
73599873 GGTAAAAAGACCGTAAAGCCCCTATAG
1 GGTAAAATGACCGTAAAGCCCCTATAG
* * *
73599900 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTATAG
73599927 GGTAAAATGAC
1 GGTAAAATGAC
73599938 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTATAG
Found at i:73600837 original size:25 final size:26
Alignment explanation
Indices: 73600740--73600837 Score: 162
Period size: 26 Copynumber: 3.8 Consensus size: 26
73600730 GAGGAAGTGC
*
73600740 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
73600766 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
73600792 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
73600818 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
73600838 ATTAAAGAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 10 0.15
26 57 0.85
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:73601047 original size:42 final size:42
Alignment explanation
Indices: 73600982--73601073 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
73600972 TAGTCTCCCC
* * ** *
73600982 AAATAGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
73601024 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
73601066 AAATGGGC
1 AAATGGGC
73601074 CTATAGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:73601135 original size:31 final size:31
Alignment explanation
Indices: 73601097--73601175 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
73601087 CGTTTACAGT
*
73601097 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
73601128 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
73601159 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
73601176 AACCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:73604688 original size:16 final size:16
Alignment explanation
Indices: 73604661--73604700 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
73604651 TATATATGCA
73604661 AATAAA-AAATAAGTG
1 AATAAATAAATAAGTG
73604676 AATAAATAAATAAGTG
1 AATAAATAAATAAGTG
*
73604692 AACAAATAA
1 AATAAATAA
73604701 GTGAAGAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.68, C:0.03, G:0.10, T:0.20
Consensus pattern (16 bp):
AATAAATAAATAAGTG
Found at i:73613804 original size:96 final size:96
Alignment explanation
Indices: 73613560--73613808 Score: 302
Period size: 96 Copynumber: 2.6 Consensus size: 96
73613550 AGATCCCGTG
* * * *
73613560 TAAGACCATATCTGGGATATGGCATCGGCATTGATAAGAG-ATCCTGTGTAAGACCATGTCTGGG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAAT-CTGTGTAAGACCATGCCTGGG
* *
73613624 ACATGGCATCGGCGTTGATATGTGAGCCAGTG
65 ACATGGCATCGGCATTGATATGTGAGCCAGTA
* * * ** *
73613656 TAAGACCATGTCTAGGACATGGCATTGGCATTGATATGTGAGCCAGTGTAAGACCATGCCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAATCTGTGTAAGACCATGCCTGGGA
* * *
73613721 CATGGCATTGGCATTGATATGTGTGCTAGTA
66 CATGGCATCGGCATTGATATGTGAGCCAGTA
* * * * *
73613752 TAAGACCATGTTTGGGACATGGCATCGGCACTGACATGAGAATTTGTATAAGACCAT
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAATCTGTGTAAGACCAT
73613809 ATCCGGGATA
Statistics
Matches: 126, Mismatches: 26, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
96 126 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (96 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAATCTGTGTAAGACCATGCCTGGGA
CATGGCATCGGCATTGATATGTGAGCCAGTA
Found at i:73613808 original size:48 final size:48
Alignment explanation
Indices: 73613557--73613781 Score: 315
Period size: 48 Copynumber: 4.7 Consensus size: 48
73613547 TTGAGATCCC
* * * * * *
73613557 GTGTAAGACCATATCTGGGATATGGCATCGGCATTGATAAGAGATCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCA
*
73613605 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCA
* *
73613653 GTGTAAGACCATGTCTAGGACATGGCATTGGCATTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCA
* * * *
73613701 GTGTAAGACCATGCCTGGGACATGGCATTGGCATTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCA
* *
73613749 GTATAAGACCATGTTTGGGACATGGCATCGGCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCA
73613782 CTGACATGAG
Statistics
Matches: 159, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 159 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCA
Found at i:73618965 original size:40 final size:39
Alignment explanation
Indices: 73618921--73619074 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
73618911 GTTCAAAACA
* * ** * *
73618921 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73618961 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
73619001 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
73619040 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
73619075 TTCATTCACA
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73619032 original size:39 final size:39
Alignment explanation
Indices: 73618951--73619074 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
73618941 TATGGTAACC
* *
73618951 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73618991 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73619030 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
73619069 CGCACA
1 CGCACA
73619075 TTCATTCACA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 60 0.78
40 17 0.22
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73621253 original size:15 final size:15
Alignment explanation
Indices: 73621233--73621263 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
73621223 TTTATCTCCC
73621233 ATGCTCGATGTCTTT
1 ATGCTCGATGTCTTT
73621248 ATGCTCGATGTCTTT
1 ATGCTCGATGTCTTT
73621263 A
1 A
73621264 CGCTTCAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.19, G:0.19, T:0.45
Consensus pattern (15 bp):
ATGCTCGATGTCTTT
Found at i:73626869 original size:40 final size:40
Alignment explanation
Indices: 73626825--73626966 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
73626815 GTTCAAAACA
* * ** * *
73626825 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* *
73626865 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
*
73626905 CCTTCGGG-CTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
73626944 CCTTC-GG-CTTAGCCCGGATATCA
1 CCTTCGGGACTTAGCCCGGATATCA
73626967 CAAATTCGCA
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
38 18 0.20
39 33 0.36
40 40 0.44
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73626962 original size:38 final size:39
Alignment explanation
Indices: 73626855--73626978 Score: 178
Period size: 39 Copynumber: 3.2 Consensus size: 39
73626845 TATGGTAACC
* *
73626855 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73626895 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73626934 CGCACAATTGCCTTC-GGCTTAGCCCGGATATCACAAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC-AACT
73626973 CGCACA
1 CGCACA
73626979 TTCATTCACA
Statistics
Matches: 76, Mismatches: 7, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
38 18 0.24
39 41 0.54
40 17 0.22
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73634834 original size:38 final size:39
Alignment explanation
Indices: 73634732--73634854 Score: 185
Period size: 38 Copynumber: 3.2 Consensus size: 39
73634722 TATGGTAACC
* *
73634732 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73634772 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73634811 CGCACAATTG-CTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
73634849 CGCACA
1 CGCACA
73634855 TTCATTCACA
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
38 31 0.41
39 28 0.37
40 17 0.22
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73636194 original size:40 final size:40
Alignment explanation
Indices: 73636145--73636312 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
73636135 TCTTCGGAAT
* *
73636145 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
73636184 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
73636224 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
73636264 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
73636304 TTAGCCCGG
1 TTAGCCCGG
73636313 TATCATTCAA
Statistics
Matches: 104, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 5 0.05
40 97 0.93
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:73644304 original size:40 final size:40
Alignment explanation
Indices: 73644200--73644368 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
73644190 GGAATTTAGT
* * * * *
73644200 CGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATGACAACTAGCACAAATGCCTTCGGGTCTTAGCC
* ** * *
73644240 CGGATTTGGTATCTTGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATGACAACTAGCACAAATGCCTTCGGGTCTTAGCC
* * * *
73644280 CGAATATGACAACTCGCACGAATGCCTTCAGGTCTTAGCC
1 CGGATATGACAACTAGCACAAATGCCTTCGGGTCTTAGCC
* * * *
73644320 CGGATATAATC-ACTAGCATAAATGACTTCGGGACTTAGCC
1 CGGATATGA-CAACTAGCACAAATGCCTTCGGGTCTTAGCC
73644360 CGGATATGA
1 CGGATATGA
73644369 TTCAAATGCT
Statistics
Matches: 101, Mismatches: 27, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
40 100 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CGGATATGACAACTAGCACAAATGCCTTCGGGTCTTAGCC
Found at i:73647251 original size:46 final size:46
Alignment explanation
Indices: 73647201--73647373 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
73647191 TGGTTGAGCA
*
73647201 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73647247 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
73647292 CATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
73647340 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73647374 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 56 0.53
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73647357 original size:93 final size:93
Alignment explanation
Indices: 73647198--73647368 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
73647188 GGATGGTTGA
* * *
73647198 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
73647263 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
73647291 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
73647355 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
73647369 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73647634 original size:19 final size:20
Alignment explanation
Indices: 73647597--73647634 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73647587 ATAAGGTGGT
73647597 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
73647617 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
73647635 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:73651941 original size:46 final size:46
Alignment explanation
Indices: 73651891--73652063 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
73651881 TGGTTGAGCA
73651891 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73651937 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
73651982 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
73652030 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73652064 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.55
47 29 0.27
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73652047 original size:93 final size:93
Alignment explanation
Indices: 73651888--73652058 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
73651878 GGATGGTTGA
*
73651888 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
73651953 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
73651981 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
73652046 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73652059 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73652325 original size:19 final size:20
Alignment explanation
Indices: 73652288--73652325 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73652278 ATAAGGTGGT
73652288 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
73652308 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
73652326 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:73654548 original size:39 final size:39
Alignment explanation
Indices: 73654504--73654779 Score: 462
Period size: 39 Copynumber: 7.1 Consensus size: 39
73654494 ATGCAAGACA
*
73654504 CTGGAAATGTATTCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
73654543 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
73654582 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
73654621 CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
** *
73654660 CTGGAAATAAATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
73654699 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
73654738 CTGGAAATGTATCCGGGTTAAAGTCCCACAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
73654777 CTG
1 CTG
73654780 ATAATATAAT
Statistics
Matches: 221, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 221 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:73656697 original size:14 final size:14
Alignment explanation
Indices: 73656678--73656708 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
73656668 AATCAAATTG
73656678 CATTATCAGTGAGT
1 CATTATCAGTGAGT
73656692 CATTATCAGTGAGT
1 CATTATCAGTGAGT
73656706 CAT
1 CAT
73656709 ACACCTTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (14 bp):
CATTATCAGTGAGT
Found at i:73656822 original size:27 final size:27
Alignment explanation
Indices: 73656791--73657221 Score: 235
Period size: 27 Copynumber: 16.2 Consensus size: 27
73656781 TTGGTAAATC
*
73656791 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * **
73656818 TACAAACCAATGGTATTTTTGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
** *
73656845 TTGAAAGTCAAGGGTATTTC------TG
1 TACAAA-TCAAGGGTATTTCAGTAATTT
* * **
73656867 T--AAATTAGGGGTATTTTTGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* *
73656892 TCCAAATTAAGGGTATTTC-GATAATTT
1 TACAAATCAAGGGTATTTCAG-TAATTT
* **
73656919 TTCAAATC-AGGAGTATTTTGGTAATTT
1 TACAAATCAAGG-GTATTTCAGTAATTT
** *
73656946 TACAAATTGAGGGTATTT-TGATAATTT
1 TACAAATCAAGGGTATTTCAG-TAATTT
* *
73656973 TACAAGTCGAGGGTATTTC-GATAATTT
1 TACAAATCAAGGGTATTTCAG-TAATTT
** *
73657000 TACAGGTCGAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * * **
73657027 CACAAATTAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* *
73657054 TACAAATCAGGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * **
73657081 TACAAACCAATGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * * **
73657108 TGCTAATCGAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
** * *
73657135 TGTAAACCAAGGGCATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* *
73657162 TAC-ACT-ATAGGGTTATTTCAGTAATTC
1 TACAAATCA-AGGG-TATTTCAGTAATTT
** *
73657189 TATCCTA-CAAGGGCATTTCAGTAATTT
1 TA-CAAATCAAGGGTATTTCAGTAATTT
73657216 TACAAA
1 TACAAA
73657222 AATAACTTGA
Statistics
Matches: 320, Mismatches: 63, Indels: 43
0.75 0.15 0.10
Matches are distributed among these distances:
19 10 0.03
20 3 0.01
22 2 0.01
25 3 0.01
26 12 0.04
27 269 0.84
28 20 0.06
29 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCAGTAATTT
Found at i:73656943 original size:54 final size:53
Alignment explanation
Indices: 73656875--73657135 Score: 265
Period size: 54 Copynumber: 4.8 Consensus size: 53
73656865 TGTAAATTAG
* * ** *
73656875 GGGTATTTTTGTAATTTTCCAAATTAAGGGTATTTCGATAATTTTTCAAATCA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCA
* * *
73656928 GGAGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGATAATTTTACAAGTCGA
1 GG-GTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATC-A
* * ** * *
73656983 GGGTATTTCGATAATTTTACAGGTCGAGGGTATTTC-AGTAATTTCACAAATTA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAATCA
* *
73657036 GGGGTATTTTGGTAATTTTACAAATC-AGGGGTATTTCGGTAATTTTACAAACCAA
1 -GGGTATTTTGGTAATTTTACAAATCGA-GGGTATTTCGATAATTTTACAAATC-A
* * * * *
73657091 TGGTATTTTGGTAATTTTGCTAATCGAGGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTT
73657136 GTAAACCAAG
Statistics
Matches: 173, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
53 5 0.03
54 163 0.94
55 5 0.03
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCA
Found at i:73656971 original size:81 final size:81
Alignment explanation
Indices: 73656875--73657165 Score: 318
Period size: 81 Copynumber: 3.6 Consensus size: 81
73656865 TGTAAATTAG
* * * *
73656875 GGGTATTTTTGTAATTTTCCAAATTAAGGGTATTTCGATAATTTTTCAAATC-AGGAGTATTTTG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGG-GTATTTTG
73656939 GTAATTTTACAAATTGA
65 GTAATTTTACAAATTGA
* * * ** * **
73656956 GGGTATTTTGATAATTTTACAAGTCGAGGGTATTTCGATAATTTTACAGGTCGAGGGTATTTCAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTTTGG
*
73657021 TAATTTCACAAATT-A
66 TAATTTTACAAATTGA
* * * *
73657036 GGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTCGGTAATTTTACAAACCAATGGTATTTTG
1 -GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTTTG
* * *
73657101 GTAATTTTGCTAATCGA
65 GTAATTTTACAAATTGA
** * *
73657118 GGGTATTTTGGTAATTTTGTAAACCAAGGGCATTTC-AGTAATTTTACA
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGA-TAATTTTACA
73657166 CTATAGGGTT
Statistics
Matches: 172, Mismatches: 34, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
80 1 0.01
81 167 0.97
82 4 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTTTGG
TAATTTTACAAATTGA
Found at i:73658939 original size:71 final size:72
Alignment explanation
Indices: 73658826--73658992 Score: 248
Period size: 71 Copynumber: 2.3 Consensus size: 72
73658816 GCTTTATCAT
* *
73658826 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAATTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
73658890 GCCCTTTTA
64 GCCCTTTTA
* * *
73658899 ATAACTGGGGCATAAGCCCTTTT-ATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
*
73658963 CCTTTTG
66 CCTTTTA
73658970 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73658993 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
71 66 0.76
72 9 0.10
73 12 0.14
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTTA
Found at i:73658993 original size:24 final size:24
Alignment explanation
Indices: 73658826--73658992 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
73658816 GCTTTATCAT
*
73658826 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
73658851 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73658875 ATAATTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73658899 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
* *
73658922 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
73658946 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
73658970 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73658993 GCACTTCCTC
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
23 22 0.17
24 99 0.74
25 12 0.09
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73659070 original size:20 final size:20
Alignment explanation
Indices: 73659042--73659108 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
73659032 TTATGAATAC
*
73659042 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
73659062 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73659082 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73659102 ACCATGT
1 ATCATGT
73659109 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:73667171 original size:48 final size:48
Alignment explanation
Indices: 73667116--73667264 Score: 253
Period size: 48 Copynumber: 3.1 Consensus size: 48
73667106 GGCCTATCCT
* * *
73667116 CTTTTAATAACAGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCC
*
73667164 CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCC
*
73667212 CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCC
73667260 CTTTT
1 CTTTT
73667265 GCACTTCCTC
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 96 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (48 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCC
Found at i:73667265 original size:24 final size:24
Alignment explanation
Indices: 73667116--73667264 Score: 228
Period size: 24 Copynumber: 6.2 Consensus size: 24
73667106 GGCCTATCCT
*
73667116 CTTTTAATAAC-AGGGGCAAAAGCC
1 CTTTTAATAACTA-GGGCATAAGCC
*
73667140 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTAGGGCATAAGCC
*
73667164 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTAGGGCATAAGCC
*
73667188 CTTTTTATAACTAGGGCATAAGCC
1 CTTTTAATAACTAGGGCATAAGCC
*
73667212 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTAGGGCATAAGCC
*
73667236 CTTTTGATAACTAGGGCATAAGCC
1 CTTTTAATAACTAGGGCATAAGCC
73667260 CTTTT
1 CTTTT
73667265 GCACTTCCTC
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
24 116 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTAGGGCATAAGCC
Found at i:73667359 original size:20 final size:20
Alignment explanation
Indices: 73667319--73667360 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
73667309 AATACATCAC
**
73667319 GTGCATATCATACATGTCAT
1 GTGCATATCATACATACCAT
73667339 GTGCATATCATACATACCAT
1 GTGCATATCATACATACCAT
73667359 GT
1 GT
73667361 TTATCAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.33
Consensus pattern (20 bp):
GTGCATATCATACATACCAT
Found at i:73683063 original size:46 final size:45
Alignment explanation
Indices: 73683013--73683187 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
73683003 TGGTTGAGCA
73683013 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
73683059 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
*
73683105 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
73683151 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73683188 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 98 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:73683167 original size:92 final size:92
Alignment explanation
Indices: 73683010--73683180 Score: 306
Period size: 92 Copynumber: 1.9 Consensus size: 92
73683000 GGATGGTTGA
* *
73683010 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73683075 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
* *
73683102 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73683167 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
73683181 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:73689659 original size:9 final size:10
Alignment explanation
Indices: 73689635--73689659 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
73689625 TTTTTGTACA
73689635 ATTTTTAATG
1 ATTTTTAATG
73689645 ATTTTTAATG
1 ATTTTTAATG
73689655 ATTTT
1 ATTTT
73689660 CTTAAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (10 bp):
ATTTTTAATG
Found at i:73693894 original size:44 final size:45
Alignment explanation
Indices: 73693716--73693939 Score: 120
Period size: 46 Copynumber: 4.8 Consensus size: 45
73693706 TTATGAGAGC
* * * * *
73693716 CAGTGTAAGACCATGTCTAGGACATGGCA-CTAGTATTGAGACAAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-AGCA-CGAGATATGT
* * * *
73693762 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCTGCCTCGAGACGTAAG-
1 -C-AGTGTAAGACCATGTCTGGGACATGGCATCAG-CACGAGA--TATGT
* * *
73693809 CTGGTGTAAGA-CATGTCTGGGAAAT-GCATCGGCTACGAGATATGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCAGC-ACGAGATATGT
*
73693854 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCA-TAGATATGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAGATATGT
* * *
73693898 TAGAAATTGTGAAAGACCATGTCTAGGACATGGCATTAGCAC
1 CAG----TGT--AAGACCATGTCTGGGACATGGCATCAGCAC
73693940 CTAACCCCAT
Statistics
Matches: 141, Mismatches: 20, Indels: 28
0.75 0.11 0.15
Matches are distributed among these distances:
44 21 0.15
45 16 0.11
46 48 0.34
47 14 0.10
48 15 0.11
50 27 0.19
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (45 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAGATATGT
Found at i:73700120 original size:20 final size:20
Alignment explanation
Indices: 73700054--73700112 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
73700044 ATTTTGATAA
*
73700054 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
73700074 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
73700094 ACATGATATGTATGATATG
1 ACATGATATGTATGATATG
73700113 TACGTGATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:73700248 original size:23 final size:24
Alignment explanation
Indices: 73700170--73700264 Score: 174
Period size: 24 Copynumber: 4.0 Consensus size: 24
73700160 GAGGAAGTGC
*
73700170 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATA
73700194 AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATA
73700218 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATA
73700241 AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATA
73700265 TGATAAAGTA
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
23 23 0.33
24 46 0.67
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATA
Found at i:73700263 original size:47 final size:48
Alignment explanation
Indices: 73700170--73700264 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 48
73700160 GAGGAAGTGC
73700170 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATA
73700218 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATA
73700265 TGATAAAGTA
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 24 0.51
48 23 0.49
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATA
Found at i:73704855 original size:49 final size:49
Alignment explanation
Indices: 73704805--73705008 Score: 351
Period size: 49 Copynumber: 4.2 Consensus size: 49
73704795 TACATATATG
*
73704805 TGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTGTA--TATA
1 TGTGATAAGGCC-TAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
73704852 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
73704901 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
73704950 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
73704999 TGTGATAAGG
1 TGTGATAAGG
73705009 TGTAACACCC
Statistics
Matches: 152, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
46 1 0.01
47 40 0.26
49 111 0.73
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:73706413 original size:40 final size:40
Alignment explanation
Indices: 73706368--73706534 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73706358 CGGAATATAA
73706368 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
73706408 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
73706448 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73706488 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73706527 CCGGATAT
1 CCGGATAT
73706535 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73706518 original size:80 final size:79
Alignment explanation
Indices: 73706368--73706534 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
73706358 CGGAATATAA
* *
73706368 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
73706433 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
73706448 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
73706510 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
73706527 CCGGATAT
1 CCGGATAT
73706535 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:73707383 original size:17 final size:19
Alignment explanation
Indices: 73707360--73707405 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
73707350 AAGAAGCATG
73707360 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
73707378 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
73707396 AATCATGCTC
1 AATCATGCTC
73707406 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:73714418 original size:40 final size:40
Alignment explanation
Indices: 73714373--73714539 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73714363 CGGAATATAA
73714373 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
73714413 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
73714453 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73714493 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73714532 CCGGATAT
1 CCGGATAT
73714540 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73714523 original size:80 final size:79
Alignment explanation
Indices: 73714373--73714539 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
73714363 CGGAATATAA
* *
73714373 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
73714438 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
73714453 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
73714515 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
73714532 CCGGATAT
1 CCGGATAT
73714540 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:73715387 original size:17 final size:19
Alignment explanation
Indices: 73715364--73715409 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
73715354 AAGAAGCATG
73715364 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
73715382 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
73715400 AATCATGCTC
1 AATCATGCTC
73715410 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:73722995 original size:40 final size:40
Alignment explanation
Indices: 73722937--73723153 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 40
73722927 CGGATGATAA
* *
73722937 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
73722977 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * * *
73723017 CCGGGCTAAGTCCCGAGGGCATTTGTACGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
73723057 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
73723097 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
73723136 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73723154 TACTTGGCTT
Statistics
Matches: 160, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 15 0.09
39 15 0.09
40 130 0.81
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:73726147 original size:25 final size:25
Alignment explanation
Indices: 73726118--73726165 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
73726108 TTATAACATG
* *
73726118 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
73726143 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
73726166 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:73726248 original size:20 final size:20
Alignment explanation
Indices: 73726202--73726242 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
73726192 ATTTTGATAA
*
73726202 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
73726222 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
73726242 A
1 A
73726243 TGTGATGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:73726324 original size:24 final size:24
Alignment explanation
Indices: 73726297--73726465 Score: 232
Period size: 24 Copynumber: 7.0 Consensus size: 24
73726287 GGAGGAAGTG
73726297 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
73726321 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
73726345 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
73726369 AAAAAGGGCGTATGTCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
73726393 AAAAAGGCCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
73726417 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
73726441 TAAAAGGGGC-TAGGCCTCCAGTTAT
1 CAAAA-GGGCTTATGCC-CCAGTTAT
73726466 ATGATAAAGC
Statistics
Matches: 132, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
24 120 0.91
25 12 0.09
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:73729465 original size:50 final size:50
Alignment explanation
Indices: 73729396--73729781 Score: 344
Period size: 50 Copynumber: 7.7 Consensus size: 50
73729386 AGACAGTTTC
*
73729396 AGGTCA-AGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACA-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
* * * * *
73729446 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCCGATAGTTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TT
* * * * * * ** *
73729497 CGATCACGTGTGTAGTATTAAGTGCAGGCTAGTAAGTGTAATAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
* * * * * * * *
73729547 AGATCACGTGTGTAGTACTAAGTTCAAGCCACAACGTGTACCGGATTGAT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
** * * * * *
73729597 AGGTTGCATGTGTTGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTT
* * * * * *
73729648 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGAT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
* * * * *
73729698 AAGTCACCTGTGCAGTACTAAGTGCAGGCTACTACATGTACCAGATTGAT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
*
73729748 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
73729782 TACGTACTAG
Statistics
Matches: 261, Mismatches: 70, Indels: 10
0.77 0.21 0.03
Matches are distributed among these distances:
49 2 0.01
50 184 0.70
51 74 0.28
52 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
Found at i:73729548 original size:101 final size:102
Alignment explanation
Indices: 73729357--73729569 Score: 248
Period size: 101 Copynumber: 2.1 Consensus size: 102
73729347 GAACACGTGC
* * ** *
73729357 AGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTCAGGTCAAGTGTGTAGTACTAAGTACA
1 AGTACTAAGTGCAGGCTACTATGAGTACAAGACAGTTTCAGATCAAGTGTGTAGTACTAAGTACA
* * * * *
73729422 GGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGT
66 GGCTACTAAGTGTAACAGATGGTTAGATCACATGTGT
** * * * *
73729459 AGTACTAAGTGCAGGCTACTATGAGTACCCGATAGTTTC-GATCACGTGTGTAGTATTAAGTGCA
1 AGTACTAAGTGCAGGCTACTATGAGTACAAGACAGTTTCAGATCAAGTGTGTAGTACTAAGTACA
* * *
73729523 GGCTAGTAAGTGTAATAGATGGTTAGATCACGTGTGT
66 GGCTACTAAGTGTAACAGATGGTTAGATCACATGTGT
73729560 AGTACTAAGT
1 AGTACTAAGT
73729570 TCAAGCCACA
Statistics
Matches: 92, Mismatches: 19, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
101 60 0.65
102 32 0.35
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (102 bp):
AGTACTAAGTGCAGGCTACTATGAGTACAAGACAGTTTCAGATCAAGTGTGTAGTACTAAGTACA
GGCTACTAAGTGTAACAGATGGTTAGATCACATGTGT
Found at i:73729588 original size:101 final size:101
Alignment explanation
Indices: 73729403--73729773 Score: 228
Period size: 101 Copynumber: 3.7 Consensus size: 101
73729393 TTCAGGTCAA
* * * * *
73729403 GTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTACAGGCTACTAAGTGTAACAGATGGTTAGATCACATGTGTAGTACTAAG
* * * *
73729468 TGCAGGCTACTATGAGTACCCGATAGTTTCGATCAC
66 TGCAAGCCACAACGAGTACCCGATAGTTTCGATCAC
* * * * *
73729504 GTGTGTAGTATTAAGTGCAGGCTAGTAAGTGTAATAGATGGTTAGATCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTACAGGCTACTAAGTGTAACAGATGGTTAGATCACATGTGTAGTACTAAG
* * * * * ** *
73729569 TTCAAGCCACAACGTGTACCGGATTGATAGGTTGCA-
66 TGCAAGCCACAACGAGTACCCGATAGTTTCGAT-CAC
* * * * * * * ** * *
73729605 -TGTGTTGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAA
1 GTGTGTAGTACTAAGTACAGGCTACTAAGTGTAACAGAT-GGTTAGATCACATGTGTAGTACTAA
* * * * * * * * **
73729669 GTGCAGGCTACTACGTGTATCAGATGGATAAG-TCAC
65 GTGCAAGCCACAACGAGTACCCGATAGTTTCGATCAC
* * * * * * * *
73729705 CTGTGCAGTACTAAGTGCAGGCTACTACA-TGTACCAGATTGATAGGTCGCATGTGTAGTACTAA
1 GTGTGTAGTACTAAGTACAGGCTACTA-AGTGTAACAGATGGTTAGATCACATGTGTAGTACTAA
73729769 GTGCA
65 GTGCA
73729774 GGCTACTATA
Statistics
Matches: 210, Mismatches: 55, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
99 2 0.01
100 53 0.25
101 153 0.73
102 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (101 bp):
GTGTGTAGTACTAAGTACAGGCTACTAAGTGTAACAGATGGTTAGATCACATGTGTAGTACTAAG
TGCAAGCCACAACGAGTACCCGATAGTTTCGATCAC
Found at i:73729624 original size:151 final size:151
Alignment explanation
Indices: 73729398--73729782 Score: 549
Period size: 151 Copynumber: 2.5 Consensus size: 151
73729388 ACAGTTTCAG
* *
73729398 GTCAAGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
** *
73729463 CTAAGTGCAGGCTACTATGAGTACCCGATAGTTTCGATCACGTGTGTAGTATTAAGTGCAGGCTA
66 CTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
* *
73729528 GTAAGTGTAAT-AGATGG-TTA
131 CTAAGTGT-ATCAGATGGATAA
* * * * * * *
73729548 GATCACGTGTGTAGTACTAAGTTCAAGCCACAACGTGTACCGGATTGATAGGTTGCATGTGTTGT
1 G-TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* *
73729613 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
65 ACTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
*
73729678 ACTACGTGTATCAGATGGATAA
130 ACTAAGTGTATCAGATGGATAA
* * * *
73729700 GTCACCTGTGCAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
73729765 CTAAGTGCAGGCTACTAT
66 CTAAGTGCAGGCTACTAT
73729783 ACGTACTAGA
Statistics
Matches: 205, Mismatches: 27, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
150 3 0.01
151 199 0.97
152 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (151 bp):
GTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
CTAAGTGTATCAGATGGATAA
Found at i:73730657 original size:179 final size:179
Alignment explanation
Indices: 73730357--73730682 Score: 510
Period size: 179 Copynumber: 1.8 Consensus size: 179
73730347 CCGAGATCTG
* *
73730357 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTATCGGACAATGAAATAGGCGTAT
1 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCAGAACTATCGGACAATGAAATAGGCGTAA
*
73730422 CTTTAATGAAGAAACTGTACTAATTGACTAAACCAAAAATTATAAAAAATTTATGGTAAGAATAT
66 CTTTAATGAAGAAAATGTACTAATTGACTAAACCAAAAATTATAAAAAATTTATGGTAAGAATAT
73730487 ATGTGAGTCTAGTTTCTGGGAAAATTATTTGCTCTTAAGTTGGAGTCCC
131 ATGTGAGTCTAGTTTCTGGGAAAATTATTTGCTCTTAAGTTGGAGTCCC
* * * * * * *
73730536 TACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTTGGATAGTGAAATAGGTGTAA
1 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCAGAACTATCGGACAATGAAATAGGCGTAA
* * * *
73730601 CTTTAATGAATAAAATGTACTAATTGGA-TAAACCAAAAATTCTGAAAATTTTATGGTAAGAATA
66 CTTTAATGAAGAAAATGTACTAATT-GACTAAACCAAAAATTATAAAAAATTTATGGTAAGAATA
73730665 TATGTGAGTCTAGTTTCT
130 TATGTGAGTCTAGTTTCT
73730683 AAAAAAAATT
Statistics
Matches: 132, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
179 130 0.98
180 2 0.02
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.32
Consensus pattern (179 bp):
TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCAGAACTATCGGACAATGAAATAGGCGTAA
CTTTAATGAAGAAAATGTACTAATTGACTAAACCAAAAATTATAAAAAATTTATGGTAAGAATAT
ATGTGAGTCTAGTTTCTGGGAAAATTATTTGCTCTTAAGTTGGAGTCCC
Done.