Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 246 of 770
Found at i:73734537 original size:46 final size:46
Alignment explanation
Indices: 73734470--73734643 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 46
73734460 TGTAACCCGC
* * * *
73734470 CCATAAGCGAACTCAGACTCAACACAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGCTCGCAT
* * *
73734516 CCATAAGTGAACTCGGACTCAACT-AACAAGCTCGGATGC-CTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGCTCGCAT
* *** * *
73734561 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCGCTCGCAT
* *
73734608 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
73734644 ATGCCCAAAT
Statistics
Matches: 101, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
45 16 0.16
46 69 0.68
47 16 0.16
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGCTCGCAT
Found at i:73734607 original size:92 final size:93
Alignment explanation
Indices: 73734477--73734648 Score: 265
Period size: 92 Copynumber: 1.9 Consensus size: 93
73734467 CGCCCATAAG
* * *
73734477 CGAACTCAGACTCAACACAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACT-A
1 CGAACTCAGACTCAACACAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGAACTCAACTCA
73734541 ACAAGCTCGGATGCCTAGTTACATCTCT
66 ACAAGCTCGGATGCCTAGTTACATCTCT
* * *
73734569 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCAGACTCAACACAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGAACTCAACTCA
* *
73734634 ACGAGTTCGGATGCC
66 ACAAGCTCGGATGCC
73734649 CAAATATCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
92 57 0.80
93 14 0.20
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCAGACTCAACACAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCT
Found at i:73747150 original size:22 final size:23
Alignment explanation
Indices: 73747125--73747167 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
73747115 TATCCACATA
*
73747125 TGGAGTGTAG-GGCTGGACGGAG
1 TGGAGTGTAGAGGATGGACGGAG
73747147 TGGAGTGTAGAGGATGGACGG
1 TGGAGTGTAGAGGATGGACGG
73747168 GTAGGACTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.07, G:0.53, T:0.19
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGACGGAG
Found at i:73747228 original size:34 final size:34
Alignment explanation
Indices: 73747187--73747263 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 34
73747177 CTGTTGCATT
* * * *
73747187 ACTGATACTGTTATTG-TAATGGGCTAAGTCCCGC
1 ACTGATACTGCTACTGCT-ATGGGCTAAGGCCCAC
*
73747221 ATTGATACTGCTACTGCTATGGGCTAAGGCCCAC
1 ACTGATACTGCTACTGCTATGGGCTAAGGCCCAC
73747255 ACTGATACT
1 ACTGATACT
73747264 AGACTGTTAC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
34 35 0.97
35 1 0.03
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (34 bp):
ACTGATACTGCTACTGCTATGGGCTAAGGCCCAC
Found at i:73750200 original size:34 final size:34
Alignment explanation
Indices: 73750121--73750201 Score: 83
Period size: 34 Copynumber: 2.4 Consensus size: 34
73750111 TGGATACTTT
* * * * * *
73750121 ACTGAAATGGTCTAAGGCCTACATTGATACTGTT
1 ACTGATATGGGCTAAGGCCCACACTAATACTGTG
*
73750155 ACT-ATATTGGGCTAAGGCCCACACTAATATTGTG
1 ACTGATA-TGGGCTAAGGCCCACACTAATACTGTG
73750189 ACTGATATGGGCT
1 ACTGATATGGGCT
73750202 TAGGTCCAGA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
33 2 0.05
34 33 0.87
35 3 0.08
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (34 bp):
ACTGATATGGGCTAAGGCCCACACTAATACTGTG
Found at i:73752443 original size:40 final size:40
Alignment explanation
Indices: 73752378--73752585 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
73752368 TCTTCGGAAT
* ** *
73752378 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
73752417 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
73752457 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
73752497 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
73752537 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
73752577 TTAGCCCGG
1 TTAGCCCGG
73752586 GTATCATTCA
Statistics
Matches: 152, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 3 0.02
40 148 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:73760644 original size:40 final size:40
Alignment explanation
Indices: 73760579--73760786 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
73760569 TCTTCGGAAT
* ** *
73760579 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
73760618 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
73760658 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
73760698 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
73760738 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
73760778 TTAGCCCGG
1 TTAGCCCGG
73760787 GTATCATTCA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 3 0.02
40 150 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:73768813 original size:40 final size:40
Alignment explanation
Indices: 73768748--73768954 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
73768738 TCTTCGGAAT
* ** *
73768748 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
73768787 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
73768827 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
73768867 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
73768906 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
73768946 TTAGCCCGG
1 TTAGCCCGG
73768955 GTATCATTCA
Statistics
Matches: 152, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 38 0.25
40 114 0.75
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:73768935 original size:79 final size:79
Alignment explanation
Indices: 73768748--73768954 Score: 301
Period size: 79 Copynumber: 2.6 Consensus size: 79
73768738 TCTTCGGAAT
* * * * *
73768748 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
73768812 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
*
73768827 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
73768892 -AATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* *
73768906 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
73768955 GTATCATTCA
Statistics
Matches: 116, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
79 63 0.54
80 53 0.46
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
AATGCCTTCGGGTC
Found at i:73774978 original size:2 final size:2
Alignment explanation
Indices: 73774971--73775000 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
73774961 TTAACATGGG
73774971 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73775001 GTGTGTGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73779495 original size:39 final size:38
Alignment explanation
Indices: 73779429--73779582 Score: 231
Period size: 38 Copynumber: 4.0 Consensus size: 38
73779419 GATGTGTATG
73779429 AATGTGCGAATTGT-ATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
73779466 AAATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
1 -AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
*
73779505 AATGTGCGAGA-TATGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGA-ATTGTGATATCCGGGCTAAGCCCGAAGGC
* * *
73779543 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGC
73779582 A
1 A
73779583 TTTGTGCGGG
Statistics
Matches: 107, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
38 73 0.68
39 34 0.32
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (38 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
Found at i:73779605 original size:39 final size:40
Alignment explanation
Indices: 73779447--73779625 Score: 149
Period size: 39 Copynumber: 4.6 Consensus size: 40
73779437 AATTGTATAT
** * ** *
73779447 CCGGGCTAAG-CCCGAAGGCAAATGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGACATAA
* *
73779486 CCGGGCTAAG-CCCGAAGGCA-ATGTGCGAGATATG--ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-T-TGACATAA
** *
73779524 CCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGACATAA
* *
73779562 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTT-ACATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGACATAA
* *
73779601 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
73779626 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
36 2 0.02
37 1 0.01
38 53 0.43
39 56 0.45
40 12 0.10
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGACATAA
Found at i:73779605 original size:77 final size:77
Alignment explanation
Indices: 73779447--73779620 Score: 226
Period size: 77 Copynumber: 2.2 Consensus size: 77
73779437 AATTGTATAT
73779447 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATGTGC
1 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATGTGC
* *
73779512 GAGATATGATAT
66 GAGATATCATAA
* * * *
73779524 CCGGGCTAAGCCCGAAGGC-ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA-ATGT
* *
73779588 GCGGGTTA-CATAA
64 GCGAGATATCATAA
*
73779601 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAG-CCCGAAGGC
73779621 GTTTGAACGA
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
76 26 0.31
77 41 0.48
78 18 0.21
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.21
Consensus pattern (77 bp):
CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATGTGC
GAGATATCATAA
Found at i:73787581 original size:39 final size:39
Alignment explanation
Indices: 73787527--73787689 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
73787517 TGTGTATGAA
73787527 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
73787566 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
73787605 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
73787644 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
73787684 TGTGCG
1 TGTGCG
73787690 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:73787705 original size:40 final size:39
Alignment explanation
Indices: 73787527--73787719 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
73787517 TGTGTATGAA
* *
73787527 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
73787566 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
73787605 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
73787644 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
73787684 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
73787720 TGTTTGAACG
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:73790969 original size:48 final size:48
Alignment explanation
Indices: 73790898--73791091 Score: 379
Period size: 48 Copynumber: 4.0 Consensus size: 48
73790888 TACGGGGTGT
73790898 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
73790946 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
73790994 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
73791042 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
73791090 TA
1 TA
73791092 AGCCATTCGG
Statistics
Matches: 144, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 144 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:73791025 original size:96 final size:96
Alignment explanation
Indices: 73790898--73791177 Score: 460
Period size: 96 Copynumber: 3.1 Consensus size: 96
73790888 TACGGGGTGT
73790898 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
73790963 CCATTCGGCTTTACCACATATACTTATCTCA
66 CCATTCGGCTTTACCACATATACTTATCTCA
73790994 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
73791059 CCATTCGGCTTTACCACATATAC--A--T-A
66 CCATTCGGCTTTACCACATATACTTATCTCA
*
73791085 T-C-----T--CATAAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
73791142 CCATTCGGCTTTACCACATATACTTATCTCA
66 CCATTCGGCTTTACCACATATACTTATCTCA
73791173 TACAT
1 TACAT
73791178 CAATTTCCGC
Statistics
Matches: 175, Mismatches: 1, Indels: 21
0.89 0.01 0.11
Matches are distributed among these distances:
83 76 0.43
85 2 0.01
87 1 0.01
88 2 0.01
89 1 0.01
90 1 0.01
91 2 0.01
92 1 0.01
94 1 0.01
96 88 0.50
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (96 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACTTATCTCA
Found at i:73791099 original size:35 final size:35
Alignment explanation
Indices: 73791057--73791126 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
73791047 ATTTCACATT
73791057 AGCCATTCGGCTTTACCACATATACATATCTCATA
1 AGCCATTCGGCTTTACCACATATACATATCTCATA
73791092 AGCCATTCGGCTTTACCACATATACATATCTCATA
1 AGCCATTCGGCTTTACCACATATACATATCTCATA
73791127 CATATTTCAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (35 bp):
AGCCATTCGGCTTTACCACATATACATATCTCATA
Found at i:73791107 original size:83 final size:83
Alignment explanation
Indices: 73791009--73791174 Score: 323
Period size: 83 Copynumber: 2.0 Consensus size: 83
73790999 ATTTCACATT
73791009 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
1 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
73791074 ACATATACATATCTCATA
66 ACATATACATATCTCATA
73791092 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
1 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
*
73791157 ACATATACTTATCTCATA
66 ACATATACATATCTCATA
73791175 CATCAATTTC
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (83 bp):
AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
ACATATACATATCTCATA
Found at i:73794593 original size:29 final size:28
Alignment explanation
Indices: 73794534--73794624 Score: 105
Period size: 28 Copynumber: 3.2 Consensus size: 28
73794524 CTGACTGATT
*
73794534 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
73794562 TCGCACACATAGTGTCTCGATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
73794591 TCGCACACATAGTGCTC-AGTTGAAGAAC
1 TCGCACACATAGTGCTCGA-TTAAAGAAC
73794619 TCGCAC
1 TCGCAC
73794625 TCTCATGCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
27 2 0.04
28 26 0.49
29 24 0.45
30 1 0.02
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:73794878 original size:40 final size:40
Alignment explanation
Indices: 73794846--73795152 Score: 407
Period size: 40 Copynumber: 7.7 Consensus size: 40
73794836 CCAGCATGAT
* * * * *
73794846 TGCTCTTCAGGACCTAGCCCGGTTATAACACCAGTACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
73794886 TGCTCTTCGGGACTTAACCCTGATATAACTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * **
73794926 TGCTCTTTGAGACTTAGCCCACATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * * *
73794966 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
73795006 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
73795046 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
*
73795086 TGCTCTTCGGGACTTAGCCCGAATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
73795126 TGCTCTTCGGGACTTAGCCCGGATATA
1 TGCTCTTCGGGACTTAGCCCGGATATA
73795153 TATAACTCTC
Statistics
Matches: 229, Mismatches: 38, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 229 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
Found at i:73796473 original size:37 final size:37
Alignment explanation
Indices: 73796409--73796554 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
73796399 AGCTCAGATG
* * *
73796409 AAATCTCCACACGAAGTTATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
73796446 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
73796483 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
73796520 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
73796555 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:73796756 original size:48 final size:48
Alignment explanation
Indices: 73796701--73797089 Score: 724
Period size: 48 Copynumber: 8.1 Consensus size: 48
73796691 ACACATCGCC
*
73796701 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
73796749 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
73796797 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
73796845 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
73796893 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
73796941 TACATATTTCACATTAGCCATTCGGCTTTTCCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
73796989 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
73797037 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
73797085 TACAT
1 TACAT
73797090 CAATTTCCGC
Statistics
Matches: 335, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 335 1.00
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:73799985 original size:26 final size:26
Alignment explanation
Indices: 73799955--73800011 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
73799945 AACATGTTAG
73799955 TAACCAAAATATTCATGTAACACCCT
1 TAACCAAAATATTCATGTAACACCCT
73799981 TAACCAAAATATTCATGTAACACCCT
1 TAACCAAAATATTCATGTAACACCCT
73800007 TAACC
1 TAACC
73800012 CGTATCCATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.42, C:0.28, G:0.04, T:0.26
Consensus pattern (26 bp):
TAACCAAAATATTCATGTAACACCCT
Found at i:73800926 original size:24 final size:26
Alignment explanation
Indices: 73800899--73800953 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
73800889 AATTAATATA
* *
73800899 CCAACTTACAACTAT-CCAAAA-TAG
1 CCAACTCACAACTATACCAAAACAAG
*
73800923 CCAACTCATAACTATACCAAAACAAG
1 CCAACTCACAACTATACCAAAACAAG
73800949 CCAAC
1 CCAAC
73800954 ATATAAGGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 13 0.50
25 6 0.23
26 7 0.27
ACGTcount: A:0.47, C:0.33, G:0.04, T:0.16
Consensus pattern (26 bp):
CCAACTCACAACTATACCAAAACAAG
Found at i:73801261 original size:18 final size:18
Alignment explanation
Indices: 73801238--73801272 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73801228 AAATTGAGCG
73801238 TTAAAAGCTTAGCAAGCT
1 TTAAAAGCTTAGCAAGCT
* *
73801256 TTAAAATCTTAGTAAGC
1 TTAAAAGCTTAGCAAGC
73801273 CATATACAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.31
Consensus pattern (18 bp):
TTAAAAGCTTAGCAAGCT
Found at i:73801599 original size:43 final size:43
Alignment explanation
Indices: 73801550--73801700 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 43
73801540 TATCCCATAT
* * *
73801550 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
* * * * *
73801593 AGGGTCTTACACGAAATCGA-TTAACGATGCCAATGTCCTAGAC
1 ATGGTCTTACACGTAATC-ACATATCGATGCCAATGTCCCAGAC
* * *
73801636 ATGGTCATACACATAATCACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATAT-CGATGCCAATGTCCCAGAC
*
73801679 ATGGTCTTACAAGTAATCACAT
1 ATGGTCTTACACGTAATCACAT
73801701 CTCGGTAACT
Statistics
Matches: 85, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 2 0.02
43 82 0.96
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:73804678 original size:8 final size:8
Alignment explanation
Indices: 73804665--73804689 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
73804655 ATTAAGGACT
73804665 AAAATGTG
1 AAAATGTG
73804673 AAAATGTG
1 AAAATGTG
73804681 AAAATGTG
1 AAAATGTG
73804689 A
1 A
73804690 GGGCTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:73805154 original size:39 final size:42
Alignment explanation
Indices: 73805049--73805166 Score: 127
Period size: 44 Copynumber: 2.8 Consensus size: 42
73805039 ACATAGGATC
* * * *
73805049 CGATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATCTGATTTCGTGTAAGACCATGTCTAGGAC-TTGACAT
73805092 CGACT-TCTGATTTACGTGTAAGACCATGTCTAGGA-TTGACAT
1 CGA-TATCTGATTT-CGTGTAAGACCATGTCTAGGACTTGACAT
* *
73805134 C-ATAT-TGATTTCGTGTAAGACCCTGTCTGGGAC
1 CGATATCTGATTTCGTGTAAGACCATGTCTAGGAC
73805167 AGTGGCGTCA
Statistics
Matches: 65, Mismatches: 6, Indels: 11
0.79 0.07 0.13
Matches are distributed among these distances:
39 19 0.29
40 7 0.11
41 2 0.03
42 7 0.11
43 10 0.15
44 20 0.31
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.32
Consensus pattern (42 bp):
CGATATCTGATTTCGTGTAAGACCATGTCTAGGACTTGACAT
Found at i:73814314 original size:39 final size:39
Alignment explanation
Indices: 73814260--73814412 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
73814250 GAATGTTCGA
*
73814260 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
73814299 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
73814338 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
73814377 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
73814413 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:73814428 original size:40 final size:39
Alignment explanation
Indices: 73814261--73814442 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
73814251 AATGTTCGAG
* *
73814261 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
73814300 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
73814339 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
73814378 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
73814418 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
73814443 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:73822398 original size:39 final size:39
Alignment explanation
Indices: 73822344--73822496 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
73822334 GAATGTTCGA
* *
73822344 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
73822383 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
73822422 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
73822461 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
73822497 GGTTACCATA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:73822512 original size:40 final size:39
Alignment explanation
Indices: 73822345--73822526 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
73822335 AATGTTCGAG
* * *
73822345 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
73822384 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
73822423 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
73822462 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
73822502 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
73822527 TGTTTTGAAC
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:73825078 original size:25 final size:25
Alignment explanation
Indices: 73825033--73825080 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
73825023 TGGTGCAATG
* *
73825033 TATTAAATATTTATATGTGATTACT
1 TATTAAATATATATATATGATTACT
73825058 TATTAAAT-TATATAATATGATTA
1 TATTAAATATATAT-ATATGATTA
73825081 AATGCTTAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (25 bp):
TATTAAATATATATATATGATTACT
Found at i:73826421 original size:43 final size:43
Alignment explanation
Indices: 73826370--73826520 Score: 171
Period size: 43 Copynumber: 3.5 Consensus size: 43
73826360 TATCCTAGAT
* * *
73826370 ATGGTCTTACATGTTATCACATATCGATGCCACTATCCCAGAC
1 ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
* * * * *
73826413 AGGGTCTTACATGAAATCA-ATTAACGATGCCAGTGTCCTAGAC
1 ATGGTCTTACATGTAATCACA-TATCGATGCCAATGTCCCAGAC
* * *
73826456 ATGGTTTTACACGTAATCACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACATAT-CGATGCCAATGTCCCAGAC
73826499 ATGGTCTTACATGTAATCACAT
1 ATGGTCTTACATGTAATCACAT
73826521 CTCGGTAACT
Statistics
Matches: 87, Mismatches: 17, Indels: 7
0.78 0.15 0.06
Matches are distributed among these distances:
42 2 0.02
43 84 0.97
44 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:73829776 original size:22 final size:22
Alignment explanation
Indices: 73829750--73829793 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
73829740 GAAAATAATC
*
73829750 AAAATTAA-TCAAAATTTATTAT
1 AAAATTAACT-AAAATTCATTAT
73829772 AAAATTAACTAAAATTCATTAT
1 AAAATTAACTAAAATTCATTAT
73829794 GTTAATAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAACTAAAATTCATTAT
Found at i:73833770 original size:15 final size:15
Alignment explanation
Indices: 73833738--73833766 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
73833728 ATTTTCTATG
73833738 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
73833753 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
73833767 ATTTTCGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:73844875 original size:30 final size:30
Alignment explanation
Indices: 73844841--73844937 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
73844831 TAAACTAAAA
73844841 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
73844871 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
73844901 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
73844931 TGAGCTA
1 TGAGCTA
73844938 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:73847121 original size:30 final size:30
Alignment explanation
Indices: 73847050--73847132 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
73847040 CTTTTGTTTC
* *
73847050 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
73847081 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
73847110 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
73847133 GCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:73847132 original size:18 final size:18
Alignment explanation
Indices: 73847083--73847138 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
73847073 CACTCTCAAA
* *
73847083 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
73847100 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
73847118 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
73847137 TT
1 TT
73847139 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:73847139 original size:12 final size:12
Alignment explanation
Indices: 73847108--73847132 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73847098 TTTTTCAATC
73847108 TCATTTTCTTTT
1 TCATTTTCTTTT
73847120 TCATTTTCTTTT
1 TCATTTTCTTTT
73847132 T
1 T
73847133 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:73847150 original size:12 final size:12
Alignment explanation
Indices: 73847135--73847165 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
73847125 TTCTTTTTGC
73847135 TTTTCAAAGGCT
1 TTTTCAAAGGCT
*
73847147 TTTTTAAAGGCT
1 TTTTCAAAGGCT
73847159 TTTTCAA
1 TTTTCAA
73847166 GTTCTCTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:73847254 original size:17 final size:16
Alignment explanation
Indices: 73847213--73847269 Score: 55
Period size: 17 Copynumber: 3.6 Consensus size: 16
73847203 CTCTTGCCTC
73847213 TCTTTTCTTTTTAT-T
1 TCTTTTCTTTTTATCT
* *
73847228 GCATTT-TTTTTATCT
1 TCTTTTCTTTTTATCT
* *
73847243 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTATCT
73847260 TCTTTTCTTT
1 TCTTTTCTTT
73847270 ATTTTCTCTT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
14 7 0.21
15 9 0.27
16 4 0.12
17 13 0.39
ACGTcount: A:0.05, C:0.16, G:0.04, T:0.75
Consensus pattern (16 bp):
TCTTTTCTTTTTATCT
Found at i:73848456 original size:41 final size:41
Alignment explanation
Indices: 73848411--73848528 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
73848401 TGAAAGATAA
73848411 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
73848452 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73848482 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73848523 ATGTAG
1 ATGTAG
73848529 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:73848467 original size:71 final size:71
Alignment explanation
Indices: 73848379--73848542 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73848369 GAGATGTATC
73848379 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73848444 AGGACA
66 AGGACA
73848450 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73848515 AGGACA
66 AGGACA
73848521 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73848543 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:73855563 original size:41 final size:41
Alignment explanation
Indices: 73855518--73855635 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
73855508 TGAAAGATAA
73855518 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
73855559 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73855589 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73855630 ATGTAG
1 ATGTAG
73855636 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:73855574 original size:71 final size:71
Alignment explanation
Indices: 73855486--73855649 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73855476 GAGATGTATC
73855486 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73855551 AGGACA
66 AGGACA
73855557 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73855622 AGGACA
66 AGGACA
73855628 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73855650 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:73857639 original size:12 final size:12
Alignment explanation
Indices: 73857624--73857658 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
73857614 TCATTTCGAT
73857624 TTTTTTTTTGAA
1 TTTTTTTTTGAA
73857636 TTTTTTTTTGAA
1 TTTTTTTTTGAA
73857648 TTTTTTTTTGA
1 TTTTTTTTTGA
73857659 CTTGTATAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.09, T:0.77
Consensus pattern (12 bp):
TTTTTTTTTGAA
Found at i:73859425 original size:30 final size:31
Alignment explanation
Indices: 73859334--73859427 Score: 95
Period size: 30 Copynumber: 3.1 Consensus size: 31
73859324 ACTAAAATGT
*
73859334 GCTAAGCTTTAGCTCGTGAGCT-AAAGTTGA
1 GCTAAGGTTTAGCTCGTGAGCTGAAAGTTGA
* * * * * *
73859364 GCTGAGGCTAAACTCCTAAGCTG-AAGTTGA
1 GCTAAGGTTTAGCTCGTGAGCTGAAAGTTGA
*
73859394 GCTAAGGTTTAGCTCGTGAGTTGAAAG-TGA
1 GCTAAGGTTTAGCTCGTGAGCTGAAAGTTGA
73859424 GCTA
1 GCTA
73859428 GGAGTGAGCT
Statistics
Matches: 48, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
30 45 0.94
31 3 0.06
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (31 bp):
GCTAAGGTTTAGCTCGTGAGCTGAAAGTTGA
Found at i:73862195 original size:32 final size:32
Alignment explanation
Indices: 73862159--73862241 Score: 121
Period size: 32 Copynumber: 2.6 Consensus size: 32
73862149 GGTTTGATAT
73862159 TGAAATGGGCTAGGCCCAACTGATATTGATTA
1 TGAAATGGGCTAGGCCCAACTGATATTGATTA
* * *
73862191 TGAAATGGGCTAGGCCTAACTGGTATTGATTT
1 TGAAATGGGCTAGGCCCAACTGATATTGATTA
* *
73862223 TGAGATGGTCTAGGCCCAA
1 TGAAATGGGCTAGGCCCAA
73862242 TTGAGACTGT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (32 bp):
TGAAATGGGCTAGGCCCAACTGATATTGATTA
Found at i:73865330 original size:20 final size:20
Alignment explanation
Indices: 73865305--73865347 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
73865295 ACCAAGTATT
73865305 TAATGG-TAGAATGATCTATA
1 TAATGGTTA-AATGATCTATA
*
73865325 TAATGGTTAAATGGTCTATA
1 TAATGGTTAAATGATCTATA
73865345 TAA
1 TAA
73865348 ACTGTGGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.37
Consensus pattern (20 bp):
TAATGGTTAAATGATCTATA
Found at i:73867419 original size:27 final size:27
Alignment explanation
Indices: 73867389--73867461 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
73867379 TCCCTACAAT
* *
73867389 GGTATTTCGATATTTGTACAC-TATAAG
1 GGTATTTCGATAATTCTAC-CTTATAAG
* *
73867416 GGTATTTCGGTAATTCTACCTTATAGG
1 GGTATTTCGATAATTCTACCTTATAAG
*
73867443 GGTATTTCGGTAATTCTAC
1 GGTATTTCGATAATTCTAC
73867462 AACCTATCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.02
27 40 0.98
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.41
Consensus pattern (27 bp):
GGTATTTCGATAATTCTACCTTATAAG
Found at i:73873180 original size:28 final size:28
Alignment explanation
Indices: 73873096--73873190 Score: 118
Period size: 29 Copynumber: 3.3 Consensus size: 28
73873086 AAAGCATGAC
*
73873096 TATGAATGTGATTTGAGCCTAATGGGCCA
1 TATGAATGTGATTAG-GCCTAATGGGCCA
* *
73873125 TACGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGA-TTAGGCCTAATGGGCCA
* *
73873154 TATGAATGAGATTAGGCCTAGTGGGCCA
1 TATGAATGTGATTAGGCCTAATGGGCCA
*
73873182 TATGCATGT
1 TATGAATGT
73873191 ATGTAGACTT
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
28 22 0.39
29 32 0.56
30 3 0.05
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (28 bp):
TATGAATGTGATTAGGCCTAATGGGCCA
Found at i:73875264 original size:27 final size:26
Alignment explanation
Indices: 73875216--73875275 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
73875206 GCGAGGCTGC
*
73875216 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
73875243 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
73875269 CAGATAT
1 CAGATAT
73875276 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:73875320 original size:71 final size:67
Alignment explanation
Indices: 73875243--73875384 Score: 185
Period size: 67 Copynumber: 2.1 Consensus size: 67
73875233 TCACCAGATA
* * * *
73875243 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACTAGATTGCAGTGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGTGA
73875308 GGCTAC
62 GGCTAC
* *
73875314 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGTGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGTGAGGCT
*
73875379 GC
66 AC
73875381 CAGA
1 CAGA
73875385 ACGCTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 39 0.61
71 25 0.39
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGTGAGGCT
AC
Found at i:73875362 original size:27 final size:26
Alignment explanation
Indices: 73875314--73875365 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
73875304 GTGAGGCTAC
*
73875314 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
73875340 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
73875366 TTGCAGTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:73881629 original size:27 final size:26
Alignment explanation
Indices: 73881581--73881632 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
73881571 GCGAGGCTGC
*
73881581 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
73881607 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
73881633 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:73882329 original size:27 final size:27
Alignment explanation
Indices: 73882299--73882370 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
73882289 TACCCTACAG
73882299 GGGTATTTCGATAATTTTGTAAATCGA
1 GGGTATTTCGATAATTTTGTAAATCGA
*** * *
73882326 GGGTAAAACGATAATTCTGTAAATCGG
1 GGGTATTTCGATAATTTTGTAAATCGA
*
73882353 GGGTACTTT-GGTAATTTT
1 GGGTA-TTTCGATAATTTT
73882371 ACAAACCAGG
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTGTAAATCGA
Found at i:73888732 original size:28 final size:29
Alignment explanation
Indices: 73888660--73888733 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
73888650 TTTGATATGC
* * *
73888660 GCCTGATGGGCCATACGAATGTGATTTGG
1 GCCTAATGGGCCATATGAATGAGATTTGG
* *
73888689 GCCTAATAGGCTATATGAATGAGA-TTGG
1 GCCTAATGGGCCATATGAATGAGATTTGG
*
73888717 GCCTAGTGGGCCATATG
1 GCCTAATGGGCCATATG
73888734 CATGTATATA
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
28 18 0.49
29 19 0.51
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.27
Consensus pattern (29 bp):
GCCTAATGGGCCATATGAATGAGATTTGG
Found at i:73899731 original size:42 final size:43
Alignment explanation
Indices: 73899639--73899733 Score: 113
Period size: 42 Copynumber: 2.2 Consensus size: 43
73899629 GTCCCTGATG
*
73899639 TGGTCTTACATGTAATCAAATATCAATGCCACTGTCCCAAACA
1 TGGTCTTACATGAAATCAAATATCAATGCCACTGTCCCAAACA
* * * **
73899682 AGCTCTTACATGAAATCAAATA-CGATGTTGA-TGTCCCAAACA
1 TGGTCTTACATGAAATCAAATATCAATG-CCACTGTCCCAAACA
73899724 TGGTCTTACA
1 TGGTCTTACA
73899734 CATAAATAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
42 23 0.53
43 20 0.47
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (43 bp):
TGGTCTTACATGAAATCAAATATCAATGCCACTGTCCCAAACA
Found at i:73907550 original size:47 final size:47
Alignment explanation
Indices: 73907480--73907823 Score: 553
Period size: 47 Copynumber: 7.3 Consensus size: 47
73907470 ATGATATACA
73907480 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
73907527 TATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
73907574 CATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
73907621 TATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
73907668 CATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
73907715 TATACGTGTGATAAGGCCAAATGGCCAATGTGATGGATGTGAAAGTG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
73907762 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
73907809 CATATGTGTGATAAG
1 TATATGTGTGATAAG
73907824 TCCCGAAGGG
Statistics
Matches: 271, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 271 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:73917160 original size:27 final size:27
Alignment explanation
Indices: 73917117--73917194 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
73917107 TCATACATCA
* *
73917117 CATA-GGGCAAAATAGTCATTTTAGT-G
1 CATAGGGGCATAACAGTCATTTTA-TAG
* *
73917143 CGTAGGGGCATAACAGTCATTATATAG
1 CATAGGGGCATAACAGTCATTTTATAG
73917170 CATAGGGGCATAACAGTCATTTTAT
1 CATAGGGGCATAACAGTCATTTTAT
73917195 CAATTAGAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.09
27 40 0.91
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.29
Consensus pattern (27 bp):
CATAGGGGCATAACAGTCATTTTATAG
Found at i:73924916 original size:27 final size:27
Alignment explanation
Indices: 73924872--73924948 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
73924862 TCATACATCA
*
73924872 CATAGGGG--TAACACTCATTTTAGT-G
1 CATAGGGGCATAACAATCATTTTA-TCG
* *
73924897 CGTAGGGGCATAACAATCATTATATCG
1 CATAGGGGCATAACAATCATTTTATCG
*
73924924 CATAGGGGCATAACAGTCATTTTAT
1 CATAGGGGCATAACAATCATTTTAT
73924949 AAATTAGGGG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
25 7 0.16
26 1 0.02
27 35 0.81
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (27 bp):
CATAGGGGCATAACAATCATTTTATCG
Found at i:73924956 original size:27 final size:27
Alignment explanation
Indices: 73924899--73924958 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
73924889 TTTTAGTGCG
**
73924899 TAGGGGCATAACAATCATTATATCGCA
1 TAGGGGCATAACAATCATTATATCAAA
* *
73924926 TAGGGGCATAACAGTCATTTTAT-AAA
1 TAGGGGCATAACAATCATTATATCAAA
73924952 TTAGGGG
1 -TAGGGG
73924959 GTCTAGGTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.28
Consensus pattern (27 bp):
TAGGGGCATAACAATCATTATATCAAA
Found at i:73929391 original size:47 final size:47
Alignment explanation
Indices: 73929319--73929631 Score: 455
Period size: 47 Copynumber: 6.5 Consensus size: 47
73929309 CCCTTCGGGA
* * * * * * *
73929319 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73929366 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73929413 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73929462 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73929509 CTTATCACATATATATACACCTTCACATACATCACATCGGCCGTTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73929558 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73929605 CTTATCACGTATATATACACTTTCACA
1 CTTATCAC--ATATATACACTTTCACA
73929632 AATTTTAATA
Statistics
Matches: 243, Mismatches: 17, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
47 137 0.56
49 106 0.44
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73929481 original size:96 final size:96
Alignment explanation
Indices: 73929319--73929631 Score: 497
Period size: 96 Copynumber: 3.3 Consensus size: 96
73929309 CCCTTCGGGA
* * * * * *
73929319 CTTATCACAT-T-TATACA-CTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATA
1 CTTATCACATATATATACACCTT-CACATACATCACATCGGCCATTAGGCCTTATCACATATATA
*
73929381 CACTTTCACATTCATCACATTGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
73929413 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACCTTCACATACATCACATCGGCCATTAGGCCTTATCACATATATAC
73929478 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
73929509 CTTATCACATATATATACACCTTCACATACATCACATCGGCCGTTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACCTTCACATACATCACATCGGCCATTAGGCCTTATCACATATATAC
73929574 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
73929605 CTTATCACGTATATATACACTTTCACA
1 CTTATCACATATATATACACCTTCACA
73929632 AATTTTAATA
Statistics
Matches: 205, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
94 10 0.05
95 1 0.00
96 191 0.93
97 3 0.01
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (96 bp):
CTTATCACATATATATACACCTTCACATACATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73932627 original size:29 final size:29
Alignment explanation
Indices: 73932585--73932668 Score: 141
Period size: 29 Copynumber: 2.9 Consensus size: 29
73932575 TGCCGTATTT
**
73932585 TTTCCAGCTTGCACACTTAGTGCCAAATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
*
73932614 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
73932643 TTTCCAGCACGCACACTTAGTGCCAA
1 TTTCCAGCACGCACACTTAGTGCCAA
73932669 TCTCGACACC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCAAATA
Found at i:73940674 original size:29 final size:29
Alignment explanation
Indices: 73940646--73940748 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
73940636 CCTCCGAGCT
** * * *
73940646 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
73940675 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
73940704 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
73940733 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
73940749 ATCTCACACC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:73950931 original size:15 final size:14
Alignment explanation
Indices: 73950889--73950938 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
73950879 ATAACTTTGA
*
73950889 ATGCAAATGATGTG
1 ATGCAAATGATGAG
73950903 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
73950918 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
73950932 ATGCAAA
1 ATGCAAA
73950939 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:73954789 original size:3 final size:3
Alignment explanation
Indices: 73954783--73954921 Score: 65
Period size: 3 Copynumber: 47.3 Consensus size: 3
73954773 AAAATACAAC
* * * *
73954783 AAT AAT AAT AGT AA- AAG ATAT AAT AA- CAT AAT AAT -AT AAT AGT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * *
73954826 AAT AGT AAC AAT -AT GAC GAT AAT AGT AAA AAT AAT -AT ATT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * **
73954870 AAT AGT AAT AA- AAGT AGT GCT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
73954915 AAT AAT A
1 AAT AAT A
73954922 TTAAAATGCA
Statistics
Matches: 100, Mismatches: 27, Indels: 18
0.69 0.19 0.12
Matches are distributed among these distances:
2 11 0.11
3 84 0.84
4 5 0.05
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:73954789 original size:22 final size:22
Alignment explanation
Indices: 73954738--73954798 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
73954728 ATAAGTAAAT
* *
73954738 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
73954759 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
73954781 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
73954799 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:73955432 original size:24 final size:24
Alignment explanation
Indices: 73955403--73955453 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
73955393 AAAAAAAAAG
*
73955403 AAAAATCCCCTCTTGAATCTCAAA
1 AAAAATCCCCTCTTAAATCTCAAA
* *
73955427 AAAAATCTCTTCTTAAATCTCAAA
1 AAAAATCCCCTCTTAAATCTCAAA
73955451 AAA
1 AAA
73955454 TTTCTTCTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.24, G:0.02, T:0.27
Consensus pattern (24 bp):
AAAAATCCCCTCTTAAATCTCAAA
Found at i:73955454 original size:22 final size:23
Alignment explanation
Indices: 73955403--73955461 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 23
73955393 AAAAAAAAAG
* * *
73955403 AAAAATCCCCTCTTGAATCTCAAA
1 AAAAATCTCTTCTTAAATCTC-AA
73955427 AAAAATCTCTTCTTAAATCTC-A
1 AAAAATCTCTTCTTAAATCTCAA
*
73955449 AAAAATTTCTTCT
1 AAAAATCTCTTCT
73955462 CTGCAAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 13 0.42
24 18 0.58
ACGTcount: A:0.41, C:0.24, G:0.02, T:0.34
Consensus pattern (23 bp):
AAAAATCTCTTCTTAAATCTCAA
Found at i:73955669 original size:13 final size:13
Alignment explanation
Indices: 73955646--73955679 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
73955636 TGAGATTAGG
73955646 TTTTTTCTTTTTGA
1 TTTTTT-TTTTTGA
73955660 -TTTTTTTTTTGA
1 TTTTTTTTTTTGA
73955672 TTTTTTTT
1 TTTTTTTT
73955680 GGGTTGGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.85
Consensus pattern (13 bp):
TTTTTTTTTTTGA
Found at i:73955675 original size:11 final size:12
Alignment explanation
Indices: 73955647--73955679 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
73955637 GAGATTAGGT
73955647 TTTTTCTTTTTGA
1 TTTTT-TTTTTGA
73955660 TTTTTTTTTTGA
1 TTTTTTTTTTGA
73955672 TTTTTTTT
1 TTTTTTTT
73955680 GGGTTGGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.85
Consensus pattern (12 bp):
TTTTTTTTTTGA
Found at i:73959153 original size:2 final size:2
Alignment explanation
Indices: 73959146--73959185 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
73959136 CACTGGTCAA
73959146 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73959186 GAGAAAATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73963623 original size:25 final size:27
Alignment explanation
Indices: 73963586--73963638 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
73963576 TCAAACATGC
73963586 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
73963612 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
73963638 A
1 A
73963639 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:73965177 original size:25 final size:26
Alignment explanation
Indices: 73965121--73965227 Score: 182
Period size: 25 Copynumber: 4.2 Consensus size: 26
73965111 CATGAAATTC
*
73965121 TATCATGAAACATTTACCTAACCCAT
1 TATCATGAAACATTTACCTAACCTAT
73965147 TATCATGAAACATTTACCTAACC-AT
1 TATCATGAAACATTTACCTAACCTAT
*
73965172 TATCATGGAACATTTACCTAACCTAT
1 TATCATGAAACATTTACCTAACCTAT
73965198 TATCATG-AACATTTACCTAACCTAT
1 TATCATGAAACATTTACCTAACCTAT
73965223 TATCA
1 TATCA
73965228 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
25 47 0.59
26 32 0.41
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TATCATGAAACATTTACCTAACCTAT
Found at i:73965200 original size:51 final size:51
Alignment explanation
Indices: 73965121--73965227 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 51
73965111 CATGAAATTC
73965121 TATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACC-AT
1 TATCATGAAACATTTACCTAACCCATTATCATG-AACATTTACCTAACCTAT
* *
73965172 TATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCTAT
1 TATCATGAAACATTTACCTAACCCATTATCATGAACATTTACCTAACCTAT
73965223 TATCA
1 TATCA
73965228 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
50 15 0.28
51 38 0.72
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (51 bp):
TATCATGAAACATTTACCTAACCCATTATCATGAACATTTACCTAACCTAT
Found at i:73967371 original size:18 final size:18
Alignment explanation
Indices: 73967329--73967414 Score: 93
Period size: 18 Copynumber: 4.8 Consensus size: 18
73967319 CCAACTACTC
* * *
73967329 TATACATGAACAGTACCG
1 TATACATGAATAGTGCTG
* *
73967347 TAAACGTGAATAGTGCTG
1 TATACATGAATAGTGCTG
* *
73967365 TATACGTGAATAGTACTG
1 TATACATGAATAGTGCTG
73967383 TATACATGAATAGTG-TCG
1 TATACATGAATAGTGCT-G
73967401 TATACATGAATAGT
1 TATACATGAATAGT
73967415 ACCATAAACG
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
17 1 0.02
18 57 0.98
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (18 bp):
TATACATGAATAGTGCTG
Found at i:73967380 original size:36 final size:36
Alignment explanation
Indices: 73967329--73967424 Score: 122
Period size: 36 Copynumber: 2.7 Consensus size: 36
73967319 CCAACTACTC
*
73967329 TATACATGAACAGTACCGTAAACGTGAATAGTG-CTG
1 TATACATGAATAGTACCGTAAACGTGAATAGTGTC-G
* * * *
73967365 TATACGTGAATAGTACTGTATACATGAATAGTGTCG
1 TATACATGAATAGTACCGTAAACGTGAATAGTGTCG
*
73967401 TATACATGAATAGTACCATAAACG
1 TATACATGAATAGTACCGTAAACG
73967425 ATCGTATTCC
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
36 48 0.98
37 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.28
Consensus pattern (36 bp):
TATACATGAATAGTACCGTAAACGTGAATAGTGTCG
Found at i:73968902 original size:25 final size:26
Alignment explanation
Indices: 73968865--73968916 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
73968855 TCAAACATGC
73968865 ATTTAGGTCAATTTA-ACCCTAGGGGT
1 ATTTAGGTCAATTTACA-CCTAGGGGT
* *
73968891 ATTTCGGT-AATTTTCACCTAGGGGT
1 ATTTAGGTCAATTTACACCTAGGGGT
73968916 A
1 A
73968917 AACAGTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (26 bp):
ATTTAGGTCAATTTACACCTAGGGGT
Found at i:73970427 original size:26 final size:26
Alignment explanation
Indices: 73970386--73970469 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
73970376 CATGAATTTC
*
73970386 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGGAACATTTACCTAAACCA
* *
73970412 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGGAACATTTACCTAAACCA
*
73970438 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAAACCA
73970464 TTATCA
1 TTATCA
73970470 ATTTGTATTA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAAACCA
Found at i:73972385 original size:3 final size:3
Alignment explanation
Indices: 73972370--73972434 Score: 121
Period size: 3 Copynumber: 21.7 Consensus size: 3
73972360 AAGAAAGGTA
*
73972370 AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
73972418 AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AA
73972435 ATCAGCAAAT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:73975070 original size:87 final size:87
Alignment explanation
Indices: 73974933--73975098 Score: 208
Period size: 87 Copynumber: 1.9 Consensus size: 87
73974923 CAGTTTGTGG
* *
73974933 ATGAACCACCAGTGTTTACAGATAAACTACCAGTAGGTTGTGAATGCACAACGTATTTGCAGATA
1 ATGAACCACCAGTGTTTACAGAAAAACTACCAGTAGGTTGTGAATGCACAACATATTTGCAGATA
*
73974998 AAAGCTGTTAGTAAGTTTGCAT
66 AAAGCTGCTAGTAAGTTTGCAT
** * * * * *
73975020 ATGAACCACC-GATGTTTGTAGAAAAACTGCTAGTATGTTGTGAGTGCACAACATATTTGTAGAT
1 ATGAACCACCAG-TGTTTACAGAAAAACTACCAGTAGGTTGTGAATGCACAACATATTTGCAGAT
* *
73975084 CAAAGTTGCTAGTAA
65 AAAAGCTGCTAGTAA
73975099 ATTCATGGAT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
86 1 0.02
87 65 0.98
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (87 bp):
ATGAACCACCAGTGTTTACAGAAAAACTACCAGTAGGTTGTGAATGCACAACATATTTGCAGATA
AAAGCTGCTAGTAAGTTTGCAT
Found at i:73975290 original size:16 final size:16
Alignment explanation
Indices: 73975271--73975302 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73975261 TCTTTAAGAT
73975271 GTATTCGATTTAACAA
1 GTATTCGATTTAACAA
*
73975287 GTATTCGGTTTAACAA
1 GTATTCGATTTAACAA
73975303 CGACAGTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (16 bp):
GTATTCGATTTAACAA
Found at i:73978793 original size:3 final size:3
Alignment explanation
Indices: 73978779--73978897 Score: 77
Period size: 3 Copynumber: 41.3 Consensus size: 3
73978769 TTCTTATCAT
* * * * * *
73978779 TTA TTT TTA TTA TTA CTA TTG CTA TTA TTA TTA TTA -TA ATA TT- TTC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
73978825 TT- TT- TTA TTA CTA TTA CTA -TA TTA TTT TTA TTT TTA CTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
73978870 TTA TTA TCA ATA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
73978898 CGTTTTCGTT
Statistics
Matches: 90, Mismatches: 22, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
2 10 0.11
3 80 0.89
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:73978834 original size:29 final size:29
Alignment explanation
Indices: 73978801--73978897 Score: 97
Period size: 29 Copynumber: 3.2 Consensus size: 29
73978791 TTACTATTGC
73978801 TATTATTATTATTATAATATTTTCT-TTTT
1 TATTATTATTATTATAATATTTT-TATTTT
* * *
73978830 TATTACTATTACTATATTATTTTTATTTT
1 TATTATTATTATTATAATATTTTTATTTT
* *
73978859 TACTACTATTATTATTATCAATATTATTATTAT
1 TA-T--TATTATTATTAT-AATATTTTTATTTT
73978892 TATTAT
1 TATTAT
73978898 CGTTTTCGTT
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
28 1 0.02
29 26 0.47
30 4 0.07
32 11 0.20
33 13 0.24
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (29 bp):
TATTATTATTATTATAATATTTTTATTTT
Found at i:73982243 original size:15 final size:16
Alignment explanation
Indices: 73982223--73982252 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
73982213 ATGTACTTAT
73982223 ATATATACAT-TAGAG
1 ATATATACATATAGAG
73982238 ATATATACATATAGA
1 ATATATACATATAGA
73982253 ATAAAATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (16 bp):
ATATATACATATAGAG
Found at i:73982550 original size:2 final size:2
Alignment explanation
Indices: 73982543--73982583 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
73982533 TTTAAAGTGC
* *
73982543 AT AT AT AT GT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73982584 CACTACGTGC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:73984074 original size:25 final size:27
Alignment explanation
Indices: 73984037--73984089 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
73984027 TCAAACATGC
73984037 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
73984063 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
73984089 A
1 A
73984090 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:73992060 original size:25 final size:27
Alignment explanation
Indices: 73992023--73992075 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
73992013 TCAAACATGC
73992023 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
73992049 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
73992075 A
1 A
73992076 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:74000909 original size:15 final size:15
Alignment explanation
Indices: 74000889--74000919 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
74000879 TTATGTTTTG
74000889 TTTTGAATAAATAAA
1 TTTTGAATAAATAAA
*
74000904 TTTTGAGTAAATAAA
1 TTTTGAATAAATAAA
74000919 T
1 T
74000920 AAATAATGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (15 bp):
TTTTGAATAAATAAA
Found at i:74002521 original size:24 final size:22
Alignment explanation
Indices: 74002489--74002540 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 22
74002479 CTCTACCCAA
74002489 ATTAAATTTAAATAATAAATATAT
1 ATTAAATTT-AATAATAAA-ATAT
*
74002513 ATTAAATTTAATTATAAAATAT
1 ATTAAATTTAATAATAAAATAT
74002535 A-TAAAT
1 ATTAAAT
74002541 ATCAATTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 5 0.19
22 5 0.19
23 8 0.30
24 9 0.33
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
ATTAAATTTAATAATAAAATAT
Found at i:74002547 original size:22 final size:23
Alignment explanation
Indices: 74002489--74002551 Score: 67
Period size: 22 Copynumber: 2.7 Consensus size: 23
74002479 CTCTACCCAA
* *
74002489 ATTAAATTTAAATAATAAATATAT
1 ATTAAA-TTCAATTATAAATATAT
*
74002513 ATTAAATTTAATTATAAA-ATAT
1 ATTAAATTCAATTATAAATATAT
74002535 A-TAAATATCAATTATAA
1 ATTAAAT-TCAATTATAA
74002552 TTTTTTTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 5 0.14
22 14 0.40
23 10 0.29
24 6 0.17
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
ATTAAATTCAATTATAAATATAT
Found at i:74006001 original size:23 final size:23
Alignment explanation
Indices: 74005931--74006001 Score: 56
Period size: 23 Copynumber: 3.0 Consensus size: 23
74005921 CCATTTAAAA
74005931 ATAA-TAAAATATTAAAAATATTT
1 ATAATTAAAAT-TTAAAAATATTT
* * * *
74005954 TTATATCAAAATTTATATACT-TTT
1 ATA-ATTAAAATTTA-AAAATATTT
*
74005978 ATAATTAAAATTTAAAATTATTT
1 ATAATTAAAATTTAAAAATATTT
74006001 A
1 A
74006002 ATTTAAATAT
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
22 3 0.08
23 16 0.44
24 9 0.25
25 8 0.22
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (23 bp):
ATAATTAAAATTTAAAAATATTT
Found at i:74006146 original size:2 final size:2
Alignment explanation
Indices: 74006137--74006171 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
74006127 TTTATTTTAT
74006137 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
74006172 AAGCATGAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:74008356 original size:60 final size:60
Alignment explanation
Indices: 74008278--74008414 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 60
74008268 CAGTGTTAAC
* * *
74008278 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTGC-AGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTA-CAGA-TATAT
* * *
74008339 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTAGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTACAGATATAT
*
74008399 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
74008415 TAACATAGTT
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
60 51 0.76
61 12 0.18
62 4 0.06
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTACAGATATAT
Found at i:74008378 original size:28 final size:27
Alignment explanation
Indices: 74008277--74008378 Score: 80
Period size: 28 Copynumber: 3.5 Consensus size: 27
74008267 TCAGTGTTAA
* *
74008277 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
*
74008305 CTGGGCCATAGCCCCT-TGCAGTATCAGAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
*
74008337 ATTGGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
74008365 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
74008379 TATTACAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
27 7 0.12
28 27 0.46
30 2 0.03
32 16 0.27
33 7 0.12
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:74009776 original size:17 final size:18
Alignment explanation
Indices: 74009754--74009791 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
74009744 TGAGAGAAGG
74009754 ATAGAA-AA-GAATAAAAA
1 ATAGAAGAAGGAA-AAAAA
74009771 ATAGAAGAAGGAAAAAAA
1 ATAGAAGAAGGAAAAAAA
74009789 ATA
1 ATA
74009792 AATCCTAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 10 0.53
19 3 0.16
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.11
Consensus pattern (18 bp):
ATAGAAGAAGGAAAAAAA
Found at i:74013145 original size:60 final size:59
Alignment explanation
Indices: 74013025--74013161 Score: 145
Period size: 60 Copynumber: 2.3 Consensus size: 59
74013015 CAGTGTTAAC
* *
74013025 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATAT
* *
74013086 TGGGCCTATCCCATATCAGA-ATCAATCTGGGCCGTAGCCCTATTACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCA-ATATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATAT
* *
74013146 TGGGCCTTGCTCATAT
1 TGGGCCTAGCCCATAT
74013162 TAACATAGTT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
59 4 0.06
60 49 0.75
61 12 0.18
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATAT
Found at i:74014520 original size:18 final size:18
Alignment explanation
Indices: 74014497--74014535 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
74014487 TGAGAGAAGG
74014497 ATAGAA-AAGAATAAAAAA
1 ATAGAAGAAGAA-AAAAAA
*
74014515 ATAGAAGAAGGAAAAAAA
1 ATAGAAGAAGAAAAAAAA
74014533 ATA
1 ATA
74014536 AATCCTAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.10
Consensus pattern (18 bp):
ATAGAAGAAGAAAAAAAA
Found at i:74017890 original size:60 final size:59
Alignment explanation
Indices: 74017770--74017906 Score: 145
Period size: 60 Copynumber: 2.3 Consensus size: 59
74017760 TAGTGTTAAC
* *
74017770 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATAT
* *
74017831 TGGGCCTATCCCATATCAGA-ATCAATCTGGGCCGTAGCCCTATTACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCA-ATATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATAT
* *
74017891 TGGGCCTTGCTCATAT
1 TGGGCCTAGCCCATAT
74017907 TAACATAGTT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
59 4 0.06
60 49 0.75
61 12 0.18
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATAT
Found at i:74019268 original size:17 final size:19
Alignment explanation
Indices: 74019246--74019284 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
74019236 TGAGAGAAGG
*
74019246 ATAGAA-AA-GAATAAAAA
1 ATAGAAGAAGGAAAAAAAA
74019263 ATAGAAGAAGGAAAAAAAA
1 ATAGAAGAAGGAAAAAAAA
74019282 ATA
1 ATA
74019285 AATCCTAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 2 0.11
19 11 0.58
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.10
Consensus pattern (19 bp):
ATAGAAGAAGGAAAAAAAA
Found at i:74021193 original size:2 final size:2
Alignment explanation
Indices: 74021186--74021215 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
74021176 CATAAGTACG
74021186 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
74021216 AATAACAGCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:74021460 original size:21 final size:21
Alignment explanation
Indices: 74021436--74021476 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
74021426 TAATACTACA
* *
74021436 TAAATATATATGCAAATATAT
1 TAAAAATATATACAAATATAT
*
74021457 TAAAAATATATACATATATA
1 TAAAAATATATACAAATATA
74021477 ATATTATAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (21 bp):
TAAAAATATATACAAATATAT
Found at i:74021881 original size:22 final size:22
Alignment explanation
Indices: 74021850--74021892 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
74021840 TTACAAGATA
*
74021850 TATACGTAATATATAAAAAATG
1 TATACATAATATATAAAAAATG
*
74021872 TATACATAATATATAGAAAAT
1 TATACATAATATATAAAAAAT
74021893 ATAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.33
Consensus pattern (22 bp):
TATACATAATATATAAAAAATG
Found at i:74022294 original size:9 final size:9
Alignment explanation
Indices: 74022282--74022310 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
74022272 AATAATAAAT
74022282 ATATTGATA
1 ATATTGATA
74022291 ATATTGATA
1 ATATTGATA
74022300 ATATT-ATA
1 ATATTGATA
74022308 ATA
1 ATA
74022311 ATAATAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (9 bp):
ATATTGATA
Found at i:74022311 original size:20 final size:19
Alignment explanation
Indices: 74022272--74022330 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 19
74022262 ATACACTAAA
*
74022272 AATAATAAATATATTGATAAT
1 AATAAT-AATAT-TTAATAAT
* *
74022293 ATTGATAATATTATAATAAT
1 AATAATAATATT-TAATAAT
74022313 AATAATAATATTTAATAA
1 AATAATAATATTTAATAA
74022331 AGGAACAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
19 7 0.22
20 21 0.66
21 4 0.12
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (19 bp):
AATAATAATATTTAATAAT
Found at i:74023033 original size:18 final size:20
Alignment explanation
Indices: 74022997--74023033 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
74022987 TCTTGATCTC
*
74022997 ATTTCCTTGTTTTGTTTCTG
1 ATTTCCTTGTTTTGATTCTG
74023017 ATTT-CTTG-TTTGATTCT
1 ATTTCCTTGTTTTGATTCT
74023034 CGGTCTATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.50
19 4 0.25
20 4 0.25
ACGTcount: A:0.08, C:0.14, G:0.14, T:0.65
Consensus pattern (20 bp):
ATTTCCTTGTTTTGATTCTG
Found at i:74023927 original size:44 final size:44
Alignment explanation
Indices: 74023817--74023930 Score: 174
Period size: 44 Copynumber: 2.6 Consensus size: 44
74023807 TTCTCGATCA
* * *
74023817 GCTCCACTGCAACTTTAGGGAGACAAGACTTGCAACTTTGACCT
1 GCTCCACTGCAACTTTAGGGAGGCCAGACTTACAACTTTGACCT
* *
74023861 GCTCCACTGCAACTTTAAGGAGGCCAGACTTACAACTTTTACCT
1 GCTCCACTGCAACTTTAGGGAGGCCAGACTTACAACTTTGACCT
*
74023905 GCTCCACTGCAACTTCAGGGAGGCCA
1 GCTCCACTGCAACTTTAGGGAGGCCA
74023931 AATCTGGTGT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 63 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (44 bp):
GCTCCACTGCAACTTTAGGGAGGCCAGACTTACAACTTTGACCT
Found at i:74024186 original size:87 final size:88
Alignment explanation
Indices: 74024076--74024392 Score: 419
Period size: 87 Copynumber: 3.6 Consensus size: 88
74024066 GTGAGCCAAT
* *
74024076 GCTCAACTCACTTCTCACAATATGAGTTG-GTTTTTGAAAAGCATAAATTGAAAAACGGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAGTTTTTGAAAAGCATAAATTGAAAAACGGAAATTG
* *
74024140 AAAATACCTTAGCGCGTCCTGAG
66 AAAATACCTCAGCGTGTCCTGAG
* * * * * **
74024163 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAACTGGAAAGCAAAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-GTTTTTGAAAAGCATAAATTGAAAAACGGAAATT
*
74024228 GAAAATACCTCAGCGTGCCCTGAG
65 GAAAATACCTCAGCGTGTCCTGAG
* * * *
74024252 GCTCAACTCACATCTCGCAATATGAGTTGA--TTTTGAAAAGCATAAATTAAAAAAAAGGGAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGAGTTTTTGAAAAGCATAAATT-GAAAAACGGAAATT
74024315 GAAAATACCTCAGCGTGTCCTGAG
65 GAAAATACCTCAGCGTGTCCTGAG
*
74024339 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAA-CATAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-GTTTTTGAAAAGCATAAATTGAAAA
74024393 TACCTCAGCA
Statistics
Matches: 199, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
86 16 0.08
87 90 0.45
88 8 0.04
89 80 0.40
90 5 0.03
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (88 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGAGTTTTTGAAAAGCATAAATTGAAAAACGGAAATTG
AAAATACCTCAGCGTGTCCTGAG
Found at i:74024434 original size:75 final size:73
Alignment explanation
Indices: 74024311--74024448 Score: 213
Period size: 75 Copynumber: 1.9 Consensus size: 73
74024301 AAAAAAAGGG
* * * *
74024311 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTTTT
74024376 GAAACATA
66 GAAACATA
*
74024384 AATTGAAAATACCTCAGCATGTGACCCGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTT
1 AATTGAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTT
74024449 GTTTGAAAAC
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
73 18 0.31
75 40 0.69
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (73 bp):
AATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTTTT
GAAACATA
Found at i:74025352 original size:42 final size:43
Alignment explanation
Indices: 74025250--74025360 Score: 145
Period size: 42 Copynumber: 2.6 Consensus size: 43
74025240 TAAAATGCCC
* * * * *
74025250 TTTCGGGTTTTCATCC-TAATTTTTTTGTTAATCAAGATGCCCTT
1 TTTCGGGTTTTCA-CCTTGA-TCTTTTGCTAATCAAGACGCACTT
74025294 TTTCGGGTTTTCACCTTGATCTTTTGCTAATCAAGACGCAC-T
1 TTTCGGGTTTTCACCTTGATCTTTTGCTAATCAAGACGCACTT
74025336 TTTCGGGTTTTCACCTTGATCTTTT
1 TTTCGGGTTTTCACCTTGATCTTTT
74025361 TTTTTAGGCA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
42 26 0.43
43 20 0.33
44 15 0.25
ACGTcount: A:0.16, C:0.21, G:0.15, T:0.48
Consensus pattern (43 bp):
TTTCGGGTTTTCACCTTGATCTTTTGCTAATCAAGACGCACTT
Found at i:74036042 original size:16 final size:17
Alignment explanation
Indices: 74036016--74036056 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
74036006 TATATATAAA
74036016 AATATATATATCTACAT
1 AATATATATATCTACAT
*
74036033 AATATA-ATATTTACAT
1 AATATATATATCTACAT
*
74036049 AATGTATA
1 AATATATA
74036057 CATACTAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (17 bp):
AATATATATATCTACAT
Found at i:74036144 original size:25 final size:26
Alignment explanation
Indices: 74036111--74036170 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
74036101 ATACGCAAAT
74036111 ATATT-AAAAA-TATATACAT-ATATA
1 ATATTAAAAAAGTATATACATAATA-A
74036135 ATATTAAAAAATGTATATACATAATAA
1 ATATTAAAAAA-GTATATACATAATAA
*
74036162 ATATGAAAA
1 ATATTAAAA
74036171 CATAATATGG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 5 0.16
25 5 0.16
27 18 0.58
28 3 0.10
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (26 bp):
ATATTAAAAAAGTATATACATAATAA
Found at i:74036158 original size:23 final size:24
Alignment explanation
Indices: 74036111--74036160 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
74036101 ATACGCAAAT
*
74036111 ATATTAAAAATATATACATATATA
1 ATATTAAAAATATATACATACATA
* *
74036135 ATATTAAAAA-ATGTATATACATA
1 ATATTAAAAATATATACATACATA
74036158 ATA
1 ATA
74036161 AATATGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (24 bp):
ATATTAAAAATATATACATACATA
Found at i:74039606 original size:130 final size:130
Alignment explanation
Indices: 74039374--74039607 Score: 315
Period size: 130 Copynumber: 1.8 Consensus size: 130
74039364 AGATTTGATG
* ****
74039374 TTTGGCAATTCGCGAAATCGTGCCCTAACGTGTTGGGTTGCAATTTTGTGTTTGCTCAAAATAAT
1 TTTGGCAATTCGCGAAATCGCGCCCTAACGTGTTGGGTTGCAATTTCCCATTTGCTCAAAATAAT
* * * * * *
74039439 CGAATCTCACTTCAAAATTTCACTTATCTCTTTTAAAATCCCTAAAACAAAGGCGATATGCGATA
66 CAAATATCACTTCAAAACTTCACTCATATCTTCTAAAATCCCTAAAACAAAGGCGATATGCGATA
* * * *
74039504 TTTGGCAATTCGTGGAATCGCGCCCTAACGTGTTGGGTTGCAATTTCCCATTTGTTTAAAATAAT
1 TTTGGCAATTCGCGAAATCGCGCCCTAACGTGTTGGGTTGCAATTTCCCATTTGCTCAAAATAAT
* *
74039569 CAAATATCCCTTCAAAACTTCACTCGTATCTTCTAAAAT
66 CAAATATCACTTCAAAACTTCACTCATATCTTCTAAAAT
74039608 TCCTTTAAAA
Statistics
Matches: 87, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
130 87 1.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (130 bp):
TTTGGCAATTCGCGAAATCGCGCCCTAACGTGTTGGGTTGCAATTTCCCATTTGCTCAAAATAAT
CAAATATCACTTCAAAACTTCACTCATATCTTCTAAAATCCCTAAAACAAAGGCGATATGCGATA
Found at i:74042649 original size:6 final size:6
Alignment explanation
Indices: 74042638--74042680 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
74042628 GGAATACACC
* *
74042638 GTAACA GTAACA GTAGCA GTAACA GTAGCA GTAACA GTAACA G
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA G
74042681 AGTACCTCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.44, C:0.16, G:0.23, T:0.16
Consensus pattern (6 bp):
GTAACA
Found at i:74043528 original size:18 final size:18
Alignment explanation
Indices: 74043505--74043539 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
74043495 CTCAAAACCC
74043505 TATTTT-TTCTTTTCTTTT
1 TATTTTCTTC-TTTCTTTT
74043523 TATTTTCTTCTTTCTTT
1 TATTTTCTTCTTTCTTT
74043540 CCCCCACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (18 bp):
TATTTTCTTCTTTCTTTT
Done.