Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 247 of 770
Found at i:74043625 original size:16 final size:17
Alignment explanation
Indices: 74043606--74043644 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
74043596 CTTTATTCAC
74043606 TTAATAT-ATTATAATA
1 TTAATATAATTATAATA
74043622 TTAATATAATTATAATA
1 TTAATATAATTATAATA
74043639 -TAATAT
1 TTAATAT
74043645 TATTTACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAATATAATTATAATA
Found at i:74050839 original size:64 final size:64
Alignment explanation
Indices: 74050766--74050982 Score: 145
Period size: 64 Copynumber: 3.3 Consensus size: 64
74050756 CTGGGCCAGA
* *
74050766 GCCCTTTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
***** * ** *
74050830 GCCCATTTCAAAATAC-ATGCAACATCAATAACATATGCAAGCCC--ATTTGGGTAACAGTGATA
1 GCCCATTTCAAAATACAAT--AA-A-CTGGGCCTTA-GC---CCCTTATTCAGATAACA--G-TA
* * *
74050892 CTGGGCTA-AA
55 -TGGCCCATAG
* * *
74050902 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
74050966 GCCCATTTCAAAATACA
1 GCCCATTTCAAAATACA
74050983 TGCAACATCA
Statistics
Matches: 105, Mismatches: 32, Indels: 32
0.62 0.19 0.19
Matches are distributed among these distances:
63 7 0.07
64 31 0.30
65 6 0.06
66 1 0.01
67 13 0.12
68 4 0.04
69 13 0.12
70 1 0.01
71 6 0.06
72 16 0.15
73 7 0.07
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:74050910 original size:136 final size:137
Alignment explanation
Indices: 74050732--74051017 Score: 493
Period size: 136 Copynumber: 2.1 Consensus size: 137
74050722 TATTGGGCCT
** * *
74050732 AAGCCCATTCAGGCAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGCAACAGTGATACTGGGCCAAAGCCCTTTTCAAATTACAATAAACTGGGCCTT
74050797 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
74050861 CATATGC
131 CATATGC
* * *
74050868 AAGCCCATTTGGGTAACAGTGATACTGGGCTAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGCAACAGTGATACTGGGCCAAAGCCCTTTTCAAATTACAATAAACTGGGCCTT
*
74050933 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
74050998 CATATGC
131 CATATGC
74051005 AAGCCCATTTGGG
1 AAGCCCATTTGGG
74051018 GAGACTACTC
Statistics
Matches: 141, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
136 119 0.84
137 22 0.16
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGCAACAGTGATACTGGGCCAAAGCCCTTTTCAAATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:74052839 original size:26 final size:26
Alignment explanation
Indices: 74052803--74052938 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
74052793 CATGAAATTC
74052803 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
74052829 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
74052855 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
74052881 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
74052907 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
74052933 TTATCA
1 TTATCA
74052939 ATTTGTATCA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 107 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:74053397 original size:7 final size:7
Alignment explanation
Indices: 74053387--74053453 Score: 53
Period size: 7 Copynumber: 8.9 Consensus size: 7
74053377 AAACCCTTAC
74053387 AAACCCA
1 AAACCCA
74053394 AAACCCA
1 AAACCCA
* *
74053401 ATACACA
1 AAACCCA
*
74053408 GAAGCCCA
1 -AAACCCA
*
74053416 AACCCCTTA
1 AAACCC--A
74053425 CAAACCCA
1 -AAACCCA
74053433 AAACCCA
1 AAACCCA
74053440 AAACCCCA
1 AAA-CCCA
74053448 AAACCC
1 AAACCC
74053454 TAATCAGCCG
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
7 30 0.62
8 12 0.25
9 1 0.02
10 5 0.10
ACGTcount: A:0.49, C:0.43, G:0.03, T:0.04
Consensus pattern (7 bp):
AAACCCA
Found at i:74053448 original size:32 final size:32
Alignment explanation
Indices: 74053394--74053454 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
74053384 TACAAACCCA
* * * *
74053394 AAACCCAATACACAGAAGCCCAAACCCCTTAC
1 AAACCCAAAACACAAAACCCCAAAACCCTTAC
*
74053426 AAACCCAAAACCCAAAACCCCAAAACCCT
1 AAACCCAAAACACAAAACCCCAAAACCCT
74053455 AATCAGCCGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 24 1.00
ACGTcount: A:0.48, C:0.43, G:0.03, T:0.07
Consensus pattern (32 bp):
AAACCCAAAACACAAAACCCCAAAACCCTTAC
Found at i:74054045 original size:16 final size:17
Alignment explanation
Indices: 74054026--74054057 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
74054016 TCCCCTCTCT
74054026 CCTCTCTC-CTTTCTTC
1 CCTCTCTCTCTTTCTTC
74054042 CCTCTCTCTCTTTCTT
1 CCTCTCTCTCTTTCTT
74054058 TTTTTTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (17 bp):
CCTCTCTCTCTTTCTTC
Found at i:74054540 original size:3 final size:3
Alignment explanation
Indices: 74054532--74054603 Score: 144
Period size: 3 Copynumber: 24.0 Consensus size: 3
74054522 TGTATTCCCA
74054532 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
74054580 TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
74054604 CGTATATTTT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:74069006 original size:18 final size:18
Alignment explanation
Indices: 74068993--74069037 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
74068983 AATAATATAT
74068993 ATAAAAGTTTTAATAATA
1 ATAAAAGTTTTAATAATA
* *
74069011 ATAAAGGTTTTCTATAAATA
1 ATAAAAGTTTT-AAT-AATA
74069031 ATAAAAG
1 ATAAAAG
74069038 AATTTAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 10 0.45
19 2 0.09
20 10 0.45
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (18 bp):
ATAAAAGTTTTAATAATA
Found at i:74069131 original size:146 final size:147
Alignment explanation
Indices: 74068963--74069227 Score: 505
Period size: 146 Copynumber: 1.8 Consensus size: 147
74068953 ATTCAAATAA
*
74068963 ATATATATATATATATTCAAAATAATATATATAAAAGTTTTAATAATAATAAAGGTTTTCTATAA
1 ATATATATATATATATTCAAAATAATATATATAAAAGTTTTAATAATAATAAAGGTTTACTATAA
*
74069028 ATAATAAAAGAATTTAAAATAGTTTTCATATAAAGTAGTGTAACTAAAA-AATAATTCAAATAAA
66 ATAATAAAAAAATTTAAAATAGTTTTCATATAAAGTAGTGTAACTAAAATAATAATTCAAATAAA
74069092 TATATATATATATATAT
131 TATATATATATATATAT
74069109 ATATATATATATATATTCAAAATAATATATATAAAAGTTTTAATAATAATAAAGGTTTACTATAA
1 ATATATATATATATATTCAAAATAATATATATAAAAGTTTTAATAATAATAAAGGTTTACTATAA
74069174 ATAATAAAAAAATTTAAAATAGTTTTCATATAAAGTAGTGTAACTAAAATAATA
66 ATAATAAAAAAATTTAAAATAGTTTTCATATAAAGTAGTGTAACTAAAATAATA
74069228 TATAAAATTT
Statistics
Matches: 116, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
146 112 0.97
147 4 0.03
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (147 bp):
ATATATATATATATATTCAAAATAATATATATAAAAGTTTTAATAATAATAAAGGTTTACTATAA
ATAATAAAAAAATTTAAAATAGTTTTCATATAAAGTAGTGTAACTAAAATAATAATTCAAATAAA
TATATATATATATATAT
Found at i:74069141 original size:2 final size:2
Alignment explanation
Indices: 74069091--74069124 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
74069081 ATTCAAATAA
74069091 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74069125 TCAAAATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74069621 original size:3 final size:3
Alignment explanation
Indices: 74069610--74069672 Score: 78
Period size: 3 Copynumber: 21.7 Consensus size: 3
74069600 TGATGATAGC
* *
74069610 AAT AGT AAT AAT -AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
74069657 AAAT AA- AAT AA- AAT AA
1 -AAT AAT AAT AAT AAT AA
74069673 GTAGCTTATA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
2 6 0.12
3 43 0.83
4 3 0.06
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:74074549 original size:6 final size:6
Alignment explanation
Indices: 74074538--74074721 Score: 135
Period size: 6 Copynumber: 29.8 Consensus size: 6
74074528 TATCATAACT
* *
74074538 AGAATC AGAATC AAAATC AGAATC AGAATC AGAATC AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * * *
74074587 AAAATT AGAACC AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* * *
74074636 AGGTAA-C AGAATC AGAATC AGAACC AGAATT AGAATT AGGTAA-C AGAATC
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* *
74074686 AGAATC AGTATC AGGTAA-C AGAATC AGAATA AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
74074722 GTGAATGCAA
Statistics
Matches: 142, Mismatches: 21, Indels: 30
0.74 0.11 0.16
Matches are distributed among these distances:
5 9 0.06
6 113 0.80
7 13 0.09
8 7 0.05
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:74074602 original size:37 final size:37
Alignment explanation
Indices: 74074543--74074631 Score: 133
Period size: 37 Copynumber: 2.4 Consensus size: 37
74074533 TAACTAGAAT
* *
74074543 CAGAATCAAAATCAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAAAATCAGAACCAGAATCAGAATCAGGTAA
* *
74074580 CAGAATCAAAATTAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAAAATCAGAACCAGAATCAGAATCAGGTAA
*
74074617 CAGAATCAGAATCAG
1 CAGAATCAAAATCAG
74074632 TATCAGGTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (37 bp):
CAGAATCAAAATCAGAACCAGAATCAGAATCAGGTAA
Found at i:74074626 original size:25 final size:25
Alignment explanation
Indices: 74074593--74074658 Score: 105
Period size: 25 Copynumber: 2.6 Consensus size: 25
74074583 AATCAAAATT
* *
74074593 AGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
74074618 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
74074643 AGAATCAGAATCAGAA
1 AGAATCAGAATCAGAA
74074659 CCAGAATTAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.17
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:74074628 original size:62 final size:62
Alignment explanation
Indices: 74074555--74074720 Score: 278
Period size: 62 Copynumber: 2.7 Consensus size: 62
74074545 GAATCAAAAT
* * * *
74074555 CAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATTAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATAAGAACCAGAATCAGAATTAGGTAA
* *
74074617 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATTAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATAAGAACCAGAATCAGAATTAGGTAA
74074679 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATAAGAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATAAGAA
74074721 TGTGAATGCA
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 98 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.18
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATAAGAACCAGAATCAGAATTAGGTAA
Found at i:74074658 original size:37 final size:37
Alignment explanation
Indices: 74074543--74074721 Score: 129
Period size: 37 Copynumber: 4.8 Consensus size: 37
74074533 TAACTAGAAT
* *
74074543 CAGAATCAAAATCAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
* * * *
74074580 CAGAATCAAAATTAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
*
74074617 CAGAATCAGAATCAGTATCAGGTAA-CAGAATCA-G-AA
1 CAGAATCAGAATCAGAATCA-G-AATCAGAATCAGGTAA
* * *
74074653 TCAGAACCAGAATTAGAATTAGGTAA-CAGAATCA-G-AA
1 -CAGAATCAGAATCAGAATCA-G-AATCAGAATCAGGTAA
* *
74074690 TCAGTATCAGGTAA-CAGAATCAGAATAAGAAT
1 -CAGAATCA-G-AATCAGAATCAGAATCAGAAT
74074722 GTGAATGCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
36 4 0.03
37 95 0.81
38 15 0.13
39 4 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (37 bp):
CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:74074683 original size:25 final size:25
Alignment explanation
Indices: 74074654--74074721 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
74074644 GAATCAGAAT
* * *
74074654 CAGAACCAGAATTAGAATTAGGTAA
1 CAGAATCAGAATAAGAATCAGGTAA
* *
74074679 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATAAGAATCAGGTAA
74074704 CAGAATCAGAATAAGAAT
1 CAGAATCAGAATAAGAAT
74074722 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATAAGAATCAGGTAA
Found at i:74074712 original size:19 final size:19
Alignment explanation
Indices: 74074543--74074693 Score: 116
Period size: 19 Copynumber: 7.8 Consensus size: 19
74074533 TAACTAGAAT
*
74074543 CAGAATCAAAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
74074560 TCAGAATCAGAATCAGGTGA
1 -CAGAATCAGAATCAGGTAA
* *
74074580 CAGAATCAAAATTA-G-AA
1 CAGAATCAGAATCAGGTAA
*
74074597 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
74074617 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG----A--ATCAGGTAA
74074642 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
* *
74074659 CCAGAATTAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
74074679 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
74074694 TATCAGGTAA
Statistics
Matches: 108, Mismatches: 11, Indels: 27
0.74 0.08 0.18
Matches are distributed among these distances:
17 3 0.03
18 40 0.37
19 41 0.38
20 5 0.05
21 1 0.01
23 1 0.01
25 17 0.16
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:74074882 original size:27 final size:26
Alignment explanation
Indices: 74074840--74074891 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
74074830 GCGAGGCTGC
*
74074840 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
74074866 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
74074892 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:74075546 original size:27 final size:27
Alignment explanation
Indices: 74075136--74075545 Score: 504
Period size: 27 Copynumber: 15.3 Consensus size: 27
74075126 GGGGCAAAAT
* * * *
74075136 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74075162 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74075189 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74075216 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74075243 GATAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
74075270 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74075297 AGTGATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74075324 GGTAATTCTACCTTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
74075351 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
74075378 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
74075405 GGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74075431 GGTAATTCTACCTTACTA-GGGTATTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
* * *
74075458 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
74075485 GGTAATTCTA-CAAACTAGGGGTGTTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
* *
74075512 GGTAATTTTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
74075539 AGTAATT
1 GGTAATT
74075546 TCACAATCGA
Statistics
Matches: 332, Mismatches: 46, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
26 41 0.12
27 289 0.87
28 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:74075580 original size:27 final size:27
Alignment explanation
Indices: 74075550--74075939 Score: 322
Period size: 27 Copynumber: 14.4 Consensus size: 27
74075540 GTAATTTCAC
74075550 AATCGAGGGTAAAACTA-TAATTTTGTA
1 AATCGAGGGTAAAA-TAGTAATTTTGTA
* * *
74075577 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* * *
74075604 AATCGAGGGTAAAACAATAATTTTATA
1 AATCGAGGGTAAAATAGTAATTTTGTA
*** *
74075631 AATCGAGGGTACTTTGGTAATTTT-TA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* ** **
74075657 CCAGTCGAGGGT-ATTTCAGTAATTTTACA
1 --AATCGAGGGTAAAAT-AGTAATTTTGTA
*** **
74075686 AATC-AGGGGTATTTTAGTAATTTTACA
1 AATCGA-GGGTAAAATAGTAATTTTGTA
* *** *
74075713 AA-CTAGGGGTATTTTAGTAATTTTCTA
1 AATCGA-GGGTAAAATAGTAATTTTGTA
* * *
74075740 AATCGAGGGTAAAATGGTAATTCTCTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* * * *
74075767 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* ** *
74075794 AATCGAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
*
74075821 AATCGAGGGTAAAATAGTAATTTTATA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* *
74075848 ATTCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
*
74075875 AATCAAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
*
74075902 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
74075929 AATCGAGGGTA
1 AATCGAGGGTA
74075940 CTTTGATAAT
Statistics
Matches: 308, Mismatches: 46, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.02
27 280 0.91
28 22 0.07
29 1 0.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.33
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTTTGTA
Found at i:74075798 original size:190 final size:189
Alignment explanation
Indices: 74075475--74075831 Score: 452
Period size: 190 Copynumber: 1.9 Consensus size: 189
74075465 CTACCCTACA
** * * **
74075475 AGGGTATTTTGGTAATTCTACAAACTAGGGGTGTTTTGGTAATTTTACCCTATAGGGGTATTTCA
1 AGGGTATTTCAGTAATTCTACAAACTAGGGGTATTTTAGTAATTTTACCAAATAGGGGTATTTCA
* * *
74075540 GTAATTTCACAATCGAGGGTAAAACTATAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAA
66 GTAATTTCACAATCGAGGGTAAAACTATAATTCTCTAAATCAAGGGTAAAACAGTAATTCTATAA
*
74075605 ATCGAGGGTAAAACAATAATTTTATAAATCGAGGGTACTTTGGTAATTTTTACCAGTCG
131 ATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACCAGTCG
*
74075664 AGGGTATTTCAGTAATTTTACAAA-TCAGGGGTATTTTAGTAATTTTA-CAAACTAGGGGTATTT
1 AGGGTATTTCAGTAATTCTACAAACT-AGGGGTATTTTAGTAATTTTACCAAA-TAGGGGTATTT
* * ** **
74075727 TAGTAATTTTCTA-AATCGAGGGTAAAA-TGGTAATTCTCTAAATTGAGGGTAAAATGGTAATTC
64 CAGTAA-TTTC-ACAATCGAGGGTAAAACT-ATAATTCTCTAAATCAAGGGTAAAACAGTAATTC
* ** *
74075790 TATAAATCGAGGGTAGAACGGTAATTCTGTAAATCGAGGGTA
126 TATAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTA
74075832 AAATAGTAAT
Statistics
Matches: 142, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
188 3 0.02
189 57 0.40
190 81 0.57
191 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.35
Consensus pattern (189 bp):
AGGGTATTTCAGTAATTCTACAAACTAGGGGTATTTTAGTAATTTTACCAAATAGGGGTATTTCA
GTAATTTCACAATCGAGGGTAAAACTATAATTCTCTAAATCAAGGGTAAAACAGTAATTCTATAA
ATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACCAGTCG
Found at i:74075949 original size:27 final size:27
Alignment explanation
Indices: 74075919--74076084 Score: 128
Period size: 27 Copynumber: 6.2 Consensus size: 27
74075909 GGTAAAATGG
**
74075919 TAATTTTGTAAATCGAGGGTACTTT-GA
1 TAATTTTACAAATCGAGGGTA-TTTCGA
** *
74075946 TAATTTTACATGTCGAGGGTATTTCAA
1 TAATTTTACAAATCGAGGGTATTTCGA
*
74075973 TAA-TTTGCAAA-CTGAGGGTATTTCGA
1 TAATTTTACAAATC-GAGGGTATTTCGA
* * *
74075999 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAAATCGAGGGTATTTCGA
* * *
74076026 TAATTTTATAAACCGAGGGTACTTT-GG
1 TAATTTTACAAATCGAGGGTA-TTTCGA
* *
74076053 TAATTTTACAACT-GAGGATATTTC-A
1 TAATTTTACAAATCGAGGGTATTTCGA
74076078 GTAATTT
1 -TAATTT
74076085 GGTAAACTAA
Statistics
Matches: 111, Mismatches: 21, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
25 4 0.04
26 35 0.32
27 68 0.61
28 4 0.04
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCGA
Found at i:74075952 original size:54 final size:54
Alignment explanation
Indices: 74075550--74075939 Score: 360
Period size: 54 Copynumber: 7.2 Consensus size: 54
74075540 GTAATTTCAC
* * **
74075550 AATCGAGGGTAAAACTA-TAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAA-TAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTA
* * *** *
74075604 AATCGAGGGTAAAACAATAATTTTATAAATCGAGGGTACTTTGGTAATT-TTTA
1 AATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTA
* ** * *** *
74075657 CCAGTCGAGGGT-ATTTCAGTAATTTTACAAATC-AGGGGTATTTTAGTAATT-T-TA
1 --AATCGAGGGTAAAAT-AGTAATTTTATAAATCGA-GGGTAAAATGGTAATTCTGTA
* * *** * *
74075711 CAAACTAGGGGTATTTTAGTAATTTTCTAAATCGAGGGTAAAATGGTAATTCTCTA
1 -AATCGA-GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTA
* * * * *
74075767 AATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTA
* *
74075821 AATCGAGGGTAAAATAGTAATTTTATAATTCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTA
* * *
74075875 AATCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTA
74075929 AATCGAGGGTA
1 AATCGAGGGTA
74075940 CTTTGATAAT
Statistics
Matches: 274, Mismatches: 52, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
53 8 0.03
54 218 0.80
55 46 0.17
56 2 0.01
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.33
Consensus pattern (54 bp):
AATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTA
Found at i:74076091 original size:53 final size:54
Alignment explanation
Indices: 74075918--74076091 Score: 201
Period size: 53 Copynumber: 3.3 Consensus size: 54
74075908 GGGTAAAATG
* ** *
74075918 GTAATTTTGTAAATCGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTCA
1 GTAATTTTGTAAACCGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCA
* * * **
74075972 ATAA-TTTGCAAACTGAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTGG
1 GTAATTTTGTAAACCGAGGGTACTTT-GATAATTTTACAAATCGAGGATATTTCA
* * *
74076025 GTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAACT-GAGGATATTTCA
1 GTAATTTTGTAAACCGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCA
*
74076078 GTAATTTGGTAAAC
1 GTAATTTTGTAAAC
74076092 TAAAGTATTC
Statistics
Matches: 98, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
52 3 0.03
53 62 0.63
54 30 0.31
55 3 0.03
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
GTAATTTTGTAAACCGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCA
Found at i:74080200 original size:64 final size:64
Alignment explanation
Indices: 74080127--74080337 Score: 142
Period size: 64 Copynumber: 3.2 Consensus size: 64
74080117 CTGGGCCAGA
*
74080127 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
74080191 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
74080253 ACTGGGCCAGA-
54 A-TGGCCCATAG
* *
74080264 GTCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
74080328 GCCCATTTCA
1 GCCCATTTCA
74080338 AAATACATGC
Statistics
Matches: 101, Mismatches: 29, Indels: 34
0.62 0.18 0.21
Matches are distributed among these distances:
63 9 0.09
64 24 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 15 0.15
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:74080339 original size:137 final size:137
Alignment explanation
Indices: 74080093--74080379 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
74080083 TATTGGGCCT
**
74080093 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
74080158 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
74080223 CATATGC
131 CATATGC
*
74080230 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGTCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
74080295 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
74080360 CATATGC
131 CATATGC
74080367 AAGCCCATTTGGG
1 AAGCCCATTTGGG
74080380 GAGACTACTC
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:74082195 original size:26 final size:26
Alignment explanation
Indices: 74082158--74082321 Score: 265
Period size: 26 Copynumber: 6.3 Consensus size: 26
74082148 GACATGAAAT
74082158 TATTATCATGAAACATTTACCTAACC
1 TATTATCATGAAACATTTACCTAACC
*
74082184 CATTATCATGAAACATTTACCTAACC
1 TATTATCATGAAACATTTACCTAACC
* *
74082210 CATTATCATGGAACATTTACCTAACC
1 TATTATCATGAAACATTTACCTAACC
* *
74082236 TATTATCATGGAATATTTACCTAACC
1 TATTATCATGAAACATTTACCTAACC
* *
74082262 TATTATCATGGAACACTTACCTAACC
1 TATTATCATGAAACATTTACCTAACC
74082288 TATTATCATGAAACATTTACCTAACC
1 TATTATCATGAAACATTTACCTAACC
74082314 TATTATCA
1 TATTATCA
74082322 ATTTGTATCA
Statistics
Matches: 130, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 130 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TATTATCATGAAACATTTACCTAACC
Found at i:74084315 original size:16 final size:15
Alignment explanation
Indices: 74084293--74084330 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
74084283 TATTTCTAAT
74084293 GTATTATTATTACTA
1 GTATTATTATTACTA
*
74084308 GTTATTATTATTTCTA
1 G-TATTATTATTACTA
74084324 GTATTAT
1 GTATTAT
74084331 CACATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.29, C:0.05, G:0.08, T:0.58
Consensus pattern (15 bp):
GTATTATTATTACTA
Found at i:74084598 original size:26 final size:25
Alignment explanation
Indices: 74084562--74084619 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
74084552 TTAATATCTT
74084562 ATATATT-ATTA-TGTACATATTTTG
1 ATATATTAATTAGT-TACATATTTTG
* *
74084586 ATATCATTAATTAGTTATATATTTTT
1 ATAT-ATTAATTAGTTACATATTTTG
74084612 ATATATTA
1 ATATATTA
74084620 TGTATATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 4 0.14
25 7 0.24
26 17 0.59
27 1 0.03
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.55
Consensus pattern (25 bp):
ATATATTAATTAGTTACATATTTTG
Found at i:74084660 original size:21 final size:20
Alignment explanation
Indices: 74084601--74084660 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 20
74084591 ATTAATTAGT
74084601 TATATATTTTTATATATTATG
1 TATATATTTTT-TATATTATG
74084622 TATAT-TTCTTTTACTATTCCATG
1 TATATATT-TTTTA-TATT--ATG
74084645 TATATATTTTTT-TATT
1 TATATATTTTTTATATT
74084661 TCATTTCATG
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
20 4 0.12
21 16 0.47
23 12 0.35
24 2 0.06
ACGTcount: A:0.27, C:0.07, G:0.03, T:0.63
Consensus pattern (20 bp):
TATATATTTTTTATATTATG
Found at i:74084925 original size:3 final size:3
Alignment explanation
Indices: 74084917--74084964 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
74084907 ATACATCTTT
*
74084917 TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
74084965 GTATATATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:74086656 original size:25 final size:25
Alignment explanation
Indices: 74086546--74086703 Score: 237
Period size: 26 Copynumber: 6.2 Consensus size: 25
74086536 TGGTACAAAT
74086546 TGATAATGTGTTAGGTAAATGTTCCA
1 TGATAATG-GTTAGGTAAATGTTCCA
* *
74086572 TGATAATGGATTAGGTAAATATTCAA
1 TGATAATGG-TTAGGTAAATGTTCCA
74086598 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
74086624 TGATAATGGATTAGGTAAATATT-CA
1 TGATAATGG-TTAGGTAAATGTTCCA
74086649 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
74086675 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
74086700 TGAT
1 TGAT
74086704 GGGCATTTCA
Statistics
Matches: 121, Mismatches: 6, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
25 46 0.38
26 73 0.60
27 2 0.02
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:74093647 original size:26 final size:26
Alignment explanation
Indices: 74093606--74093761 Score: 221
Period size: 26 Copynumber: 6.2 Consensus size: 26
74093596 TGGTACAAAT
74093606 TGATAAT-G-TTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
74093630 TGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGATTAGGTAAATGTTCCA
*
74093656 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
74093681 TGATAACGGATTAGGTAAATATT-CA
1 TGATAATGGATTAGGTAAATGTTCCA
*
74093706 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
74093732 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
74093758 TGAT
1 TGAT
74093762 GGGCATTTCA
Statistics
Matches: 117, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
24 7 0.06
25 44 0.38
26 66 0.56
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:74093694 original size:51 final size:51
Alignment explanation
Indices: 74093606--74093761 Score: 246
Period size: 51 Copynumber: 3.1 Consensus size: 51
74093596 TGGTACAAAT
74093606 TGATAAT--GTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTC-A
*
74093656 TGATAATGGGTTAGGTAAATGTT-CATGATAACGGATTAGGTAAATATTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCA
* *
74093706 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATT-CA
74093758 TGAT
1 TGAT
74093762 GGGCATTTCA
Statistics
Matches: 98, Mismatches: 4, Indels: 6
0.91 0.04 0.06
Matches are distributed among these distances:
50 31 0.32
51 47 0.48
52 20 0.20
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (51 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCA
Found at i:74093708 original size:76 final size:78
Alignment explanation
Indices: 74093614--74093761 Score: 237
Period size: 76 Copynumber: 1.9 Consensus size: 78
74093604 ATTGATAATG
*
74093614 TTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCAATGATAATGGGTTAGGTAAATGTT
1 TTAGGTAAATATTCCATGATAATGGATTAGGTAAATATTCAATGATAATGGGTTAGGTAAATGTT
74093679 -CATGATAACGGA
66 CCATGATAACGGA
* * * *
74093691 TTAGGTAAATATT-CATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTT
1 TTAGGTAAATATTCCATGATAATGGATTAGGTAAATATTCAATGATAATGGGTTAGGTAAATGTT
74093755 CCATGAT
66 CCATGAT
74093762 GGGCATTTCA
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
76 47 0.72
77 18 0.28
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (78 bp):
TTAGGTAAATATTCCATGATAATGGATTAGGTAAATATTCAATGATAATGGGTTAGGTAAATGTT
CCATGATAACGGA
Found at i:74100447 original size:28 final size:28
Alignment explanation
Indices: 74100382--74100480 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
74100372 ATAGTGAATC
* *
74100382 CGCACACTTAGTGCTGTATATTC-AGCT
1 CGCACACTTAGTGCTGTATAATCAAACT
*
74100409 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTGTATAATCAAACT
* * *
74100437 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTGTATAA--TCAAACT
74100467 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74100481 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 21 0.34
28 22 0.35
30 19 0.31
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTGTATAATCAAACT
Found at i:74107771 original size:29 final size:30
Alignment explanation
Indices: 74107739--74107839 Score: 111
Period size: 30 Copynumber: 3.5 Consensus size: 30
74107729 ATAGTGAATC
* *
74107739 CGCACACTTAGTGCTGTATATATTC-AGCT
1 CGCACACTTAGTGCTGTATATAATCAAACT
74107768 CGCACACTTAGTGC--TATATAATCAAACT
1 CGCACACTTAGTGCTGTATATAATCAAACT
* * * *
74107796 CGCACACTTAGTGCTGTACA-ATTTTAAACC
1 CGCACACTTAGTGCTGTATATA-ATCAAACT
74107826 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74107840 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
27 8 0.13
28 17 0.27
29 15 0.24
30 22 0.35
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (30 bp):
CGCACACTTAGTGCTGTATATAATCAAACT
Found at i:74107806 original size:28 final size:28
Alignment explanation
Indices: 74107739--74107839 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
74107729 ATAGTGAATC
* *
74107739 CGCACACTTAGTGCTGTATATATTC-AGCT
1 CGCACACTTAGTGC--TATATAATCAAACT
74107768 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
74107796 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
74107826 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74107840 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 8 0.13
28 22 0.35
29 14 0.22
30 19 0.30
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:74110169 original size:15 final size:15
Alignment explanation
Indices: 74110149--74110177 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
74110139 GTATGAAGCT
74110149 TGATAAACTTGTATA
1 TGATAAACTTGTATA
74110164 TGATAAACTTGTAT
1 TGATAAACTTGTAT
74110178 GAACATGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (15 bp):
TGATAAACTTGTATA
Found at i:74112616 original size:14 final size:14
Alignment explanation
Indices: 74112597--74112625 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
74112587 GATGTTATTA
74112597 CCGGTACTTTTACT
1 CCGGTACTTTTACT
74112611 CCGGTACTTTTACT
1 CCGGTACTTTTACT
74112625 C
1 C
74112626 TCTCTGATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.31, G:0.14, T:0.41
Consensus pattern (14 bp):
CCGGTACTTTTACT
Found at i:74117654 original size:22 final size:23
Alignment explanation
Indices: 74117598--74117672 Score: 78
Period size: 23 Copynumber: 3.0 Consensus size: 23
74117588 GGCTCATCTT
* *
74117598 ATTCAGATGGCCCATCAGGCCCA
1 ATTCATATGGCCCATTAGGCCCA
74117621 ATTCACATTCATTGGCCCATTAGGCCCA
1 ATT--CA-T-A-TGGCCCATTAGGCCCA
*
74117649 ATTCATATGGCCTATTAGGCCCA
1 ATTCATATGGCCCATTAGGCCCA
74117672 A
1 A
74117673 ATCACCTTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
23 19 0.43
24 1 0.02
25 3 0.07
26 2 0.05
27 1 0.02
28 18 0.41
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (23 bp):
ATTCATATGGCCCATTAGGCCCA
Found at i:74117659 original size:51 final size:52
Alignment explanation
Indices: 74117598--74117701 Score: 138
Period size: 51 Copynumber: 2.0 Consensus size: 52
74117588 GGCTCATCTT
*
74117598 ATTCAGATGGCCCATCAGGCCCAATTCACATTCAT-TGGCCCATTAGGCCCA
1 ATTCAGATGGCCCATCAGGCCCAAATCACATTCATATGGCCCATTAGGCCCA
* * * * * *
74117649 ATTCATATGGCCTATTAGGCCCAAATCACCTTTATATGGCCCGTTAGGCCCA
1 ATTCAGATGGCCCATCAGGCCCAAATCACATTCATATGGCCCATTAGGCCCA
74117701 A
1 A
74117702 ATCACCTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
51 29 0.64
52 16 0.36
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (52 bp):
ATTCAGATGGCCCATCAGGCCCAAATCACATTCATATGGCCCATTAGGCCCA
Found at i:74117687 original size:29 final size:28
Alignment explanation
Indices: 74117604--74117713 Score: 106
Period size: 29 Copynumber: 4.1 Consensus size: 28
74117594 TCTTATTCAG
* * *
74117604 ATGGCCCATCAGGCCCAATTCACATTCAT
1 ATGGCCCATTAGGCCCAAATCACCTT-AT
*
74117633 -TGGCCCATTAGGCCC-AAT----TCAT
1 ATGGCCCATTAGGCCCAAATCACCTTAT
*
74117655 ATGGCCTATTAGGCCCAAATCACCTTTAT
1 ATGGCCCATTAGGCCCAAATCACC-TTAT
*
74117684 ATGGCCCGTTAGGCCCAAATCACCTTAT
1 ATGGCCCATTAGGCCCAAATCACCTTAT
74117712 AT
1 AT
74117714 TCATGCTCAC
Statistics
Matches: 67, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
22 2 0.03
23 15 0.22
24 3 0.04
27 2 0.03
28 20 0.30
29 25 0.37
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.27
Consensus pattern (28 bp):
ATGGCCCATTAGGCCCAAATCACCTTAT
Found at i:74119011 original size:16 final size:17
Alignment explanation
Indices: 74118979--74119019 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 17
74118969 ACAAAGAAAG
74118979 TTTGGGATTTCAGGATT
1 TTTGGGATTTCAGGATT
74118996 TTTGGG-TTTC-GAGATT
1 TTTGGGATTTCAG-GATT
74119012 TTTAGGGA
1 TTT-GGGA
74119020 GTTACAACTC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 1 0.05
16 11 0.52
17 9 0.43
ACGTcount: A:0.17, C:0.05, G:0.32, T:0.46
Consensus pattern (17 bp):
TTTGGGATTTCAGGATT
Found at i:74119338 original size:18 final size:19
Alignment explanation
Indices: 74119312--74119352 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
74119302 GGCCTCTCAG
74119312 CGGTAGCTG-ACCACC-CCT
1 CGGTAGCTGTA-CACCACCT
*
74119330 CGGTGGCTGTACACCACCT
1 CGGTAGCTGTACACCACCT
74119349 CGGT
1 CGGT
74119353 CCACAACTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.15, C:0.39, G:0.27, T:0.20
Consensus pattern (19 bp):
CGGTAGCTGTACACCACCT
Found at i:74121639 original size:29 final size:29
Alignment explanation
Indices: 74121596--74121665 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
74121586 TGGCCCATCT
*
74121596 CATTCATA-GGACCCATCAGGCCGAATTCA
1 CATTCATATGG-CCCATCAGGCCCAATTCA
*
74121625 TATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
*
74121654 CATTTATATGGC
1 CATTCATATGGC
74121666 TTATTAGCCC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
29 34 0.94
30 2 0.06
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (29 bp):
CATTCATATGGCCCATCAGGCCCAATTCA
Found at i:74121701 original size:29 final size:29
Alignment explanation
Indices: 74121630--74121719 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 29
74121620 ATTCATATTC
* * *
74121630 ATATGGCCCATCAGGCCCAATTCACATTT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
** *
74121659 ATATGGCTTATTAGCCCCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
* *
74121688 ATATGGCCCGTTAGGCCAAAATCACC-TT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
74121716 ATAT
1 ATAT
74121720 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
28 6 0.12
29 44 0.88
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTTT
Found at i:74123488 original size:37 final size:37
Alignment explanation
Indices: 74123438--74123561 Score: 214
Period size: 37 Copynumber: 3.3 Consensus size: 37
74123428 TACGAAGTCT
*
74123438 TACCCGGACATAATCTCCACACGTAGTCATCCGGTCG
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
74123475 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
74123512 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC-
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
74123548 TCACCCGGAACATA
1 T-ACCCGG-ACATA
74123562 TTTCTAAGTT
Statistics
Matches: 84, Mismatches: 1, Indels: 3
0.95 0.01 0.03
Matches are distributed among these distances:
36 1 0.01
37 78 0.93
38 5 0.06
ACGTcount: A:0.26, C:0.34, G:0.19, T:0.21
Consensus pattern (37 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
Found at i:74123697 original size:49 final size:49
Alignment explanation
Indices: 74123630--74123880 Score: 466
Period size: 49 Copynumber: 5.1 Consensus size: 49
74123620 TTTACCACAT
* *
74123630 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
74123679 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
74123728 ATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
74123777 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
74123826 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
74123875 ATATAT
1 ATATAT
74123881 TATTATGTAC
Statistics
Matches: 196, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 196 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:74123871 original size:147 final size:148
Alignment explanation
Indices: 74123602--74123880 Score: 488
Period size: 147 Copynumber: 1.9 Consensus size: 148
74123592 GTTACAACAT
* * * *
74123602 TCACATTAGCCATTCGGCTTTACCACATATATATATACACTTTCACATTCATCACGTCGGCCATT
1 TCACATCAGCCATTAGGCCTTACCACA-ATATATATACACTTTCACATTCATCACATCGGCCATT
74123667 AGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
65 AGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
74123732 ATATACACTTTCACATTCA
130 ATATACACTTTCACATTCA
* *
74123751 TCACATCAGCCATTAGGCCTTATCAC-ATATATATACATTTTCACATTCATCACATCGGCCATTA
1 TCACATCAGCCATTAGGCCTTACCACAATATATATACACTTTCACATTCATCACATCGGCCATTA
74123815 GGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
66 GGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
74123880 T
131 T
74123881 TATTATGTAC
Statistics
Matches: 124, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
147 102 0.82
149 22 0.18
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.34
Consensus pattern (148 bp):
TCACATCAGCCATTAGGCCTTACCACAATATATATACACTTTCACATTCATCACATCGGCCATTA
GGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
TATACACTTTCACATTCA
Found at i:74130538 original size:29 final size:29
Alignment explanation
Indices: 74130506--74130595 Score: 126
Period size: 29 Copynumber: 3.1 Consensus size: 29
74130496 ATTCATGGGA
*
74130506 CCCATCAGGCCGAATTCACATTCATATGG
1 CCCATCAGGCCCAATTCACATTCATATGG
74130535 CCCATCAGGCCCAATTCACATTCATATGG
1 CCCATCAGGCCCAATTCACATTCATATGG
* * * * *
74130564 CCTATTAGGCCCAAATCACCTTTATATGG
1 CCCATCAGGCCCAATTCACATTCATATGG
74130593 CCC
1 CCC
74130596 GTTACGCCGA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.26
Consensus pattern (29 bp):
CCCATCAGGCCCAATTCACATTCATATGG
Found at i:74130608 original size:29 final size:28
Alignment explanation
Indices: 74130529--74130618 Score: 90
Period size: 29 Copynumber: 3.1 Consensus size: 28
74130519 ATTCACATTC
* * * *
74130529 ATATGGCCCATCAGGCCCAATTCACATT
1 ATATGGCCCATTACGCCCAAATCACCTT
* *
74130557 CATATGGCCTATTAGGCCCAAATCACCTTT
1 -ATATGGCCCATTACGCCCAAATCACC-TT
* *
74130587 ATATGGCCCGTTACGCCGAAATCACCTT
1 ATATGGCCCATTACGCCCAAATCACCTT
74130615 ATAT
1 ATAT
74130619 TCATGCTCAC
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
28 6 0.12
29 44 0.85
30 2 0.04
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (28 bp):
ATATGGCCCATTACGCCCAAATCACCTT
Found at i:74132420 original size:18 final size:19
Alignment explanation
Indices: 74132394--74132434 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
74132384 GGCCTTTCAG
74132394 CGGTAGCT-GACCACC-CCT
1 CGGTAGCTGGA-CACCACCT
*
74132412 CGGTGGCTGGACACCACCT
1 CGGTAGCTGGACACCACCT
74132431 CGGT
1 CGGT
74132435 CCACGACTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.15, C:0.39, G:0.29, T:0.17
Consensus pattern (19 bp):
CGGTAGCTGGACACCACCT
Found at i:74135036 original size:29 final size:29
Alignment explanation
Indices: 74135000--74135065 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
74134990 TGGCCCATCT
*
74135000 CATTCATAAGACCCATCAGGCCGAATTCA
1 CATTCATAAGACCCATCAGGCCCAATTCA
* * *
74135029 CATTCATATGGCTCATCAGGCCCAATTCA
1 CATTCATAAGACCCATCAGGCCCAATTCA
74135058 CATTCATA
1 CATTCATA
74135066 TGGCCTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (29 bp):
CATTCATAAGACCCATCAGGCCCAATTCA
Found at i:74135066 original size:29 final size:28
Alignment explanation
Indices: 74135012--74135099 Score: 113
Period size: 29 Copynumber: 3.1 Consensus size: 28
74135002 TTCATAAGAC
*
74135012 CCATCAGGCCGAATTCACATTCATATGG
1 CCATCAGGCCCAATTCACATTCATATGG
74135040 CTCATCAGGCCCAATTCACATTCATATGG
1 C-CATCAGGCCCAATTCACATTCATATGG
* * * *
74135069 CCTATTAGGCCCAAATCACCTTTATATGG
1 CC-ATCAGGCCCAATTCACATTCATATGG
74135098 CC
1 CC
74135100 TGTTAGGCCG
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
28 2 0.04
29 51 0.96
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (28 bp):
CCATCAGGCCCAATTCACATTCATATGG
Found at i:74135100 original size:29 final size:29
Alignment explanation
Indices: 74135046--74135123 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
74135036 ATGGCTCATC
* * *
74135046 AGGCCCAATTCACATTCATATGGCCTATT
1 AGGCCCAAATCACCTTTATATGGCCTATT
*
74135075 AGGCCCAAATCACCTTTATATGGCCTGTT
1 AGGCCCAAATCACCTTTATATGGCCTATT
*
74135104 AGGCCGAAATCACC-TTATAT
1 AGGCCCAAATCACCTTTATAT
74135124 TCATGCTCAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 6 0.14
29 38 0.86
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
AGGCCCAAATCACCTTTATATGGCCTATT
Found at i:74135375 original size:16 final size:16
Alignment explanation
Indices: 74135334--74135377 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
74135324 GTAGCCAAAC
74135334 TTTTAGCTTTTCAGTA
1 TTTTAGCTTTTCAGTA
74135350 TTTT-GACTTTTCAG-A
1 TTTTAG-CTTTTCAGTA
74135365 TTTTCAGCTTTTC
1 TTTT-AGCTTTTC
74135378 GGCTTTTGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 6 0.24
16 18 0.72
17 1 0.04
ACGTcount: A:0.16, C:0.16, G:0.11, T:0.57
Consensus pattern (16 bp):
TTTTAGCTTTTCAGTA
Found at i:74139476 original size:43 final size:43
Alignment explanation
Indices: 74139412--74139498 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
74139402 ATTTGTGATT
** ** *
74139412 TCGATATGTGTTTACGAGTAAGACCTTGTCTGGGACAATGGCA
1 TCGATATGTGGCTACGAGTAAGACCACGTCTAGGACAATGGCA
*
74139455 TCGATATGTGGCTAC-ATGTAAGACCACGTCTAGGACATTGGCA
1 TCGATATGTGGCTACGA-GTAAGACCACGTCTAGGACAATGGCA
74139498 T
1 T
74139499 TGTATGATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
42 1 0.03
43 36 0.97
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
TCGATATGTGGCTACGAGTAAGACCACGTCTAGGACAATGGCA
Found at i:74150501 original size:6 final size:7
Alignment explanation
Indices: 74150484--74150510 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
74150474 TTGTTCTTAA
74150484 AAAAAAT
1 AAAAAAT
74150491 AAAAAAT
1 AAAAAAT
74150498 AAAAAAT
1 AAAAAAT
74150505 AAAAAA
1 AAAAAA
74150511 ATACAATACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (7 bp):
AAAAAAT
Found at i:74152806 original size:27 final size:26
Alignment explanation
Indices: 74152766--74152873 Score: 101
Period size: 27 Copynumber: 4.0 Consensus size: 26
74152756 AGCATGGCTG
* * * *
74152766 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAAATATTGTGGCAGAGCCA
74152792 CCAGATACAAATATTGTGGCAGAGCCA
1 CCAGA-ACAAATATTGTGGCAGAGCCA
* *
74152819 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAAATA-TTGTGGCAGAGCCA
* *
74152846 CCAGAAACAGATAATGTGGC-GAAGCCA
1 CCAG-AACAAATATTGTGGCAG-AGCCA
74152873 C
1 C
74152874 TTACCAGAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
26 11 0.16
27 51 0.73
28 8 0.11
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAAATATTGTGGCAGAGCCA
Found at i:74152864 original size:54 final size:53
Alignment explanation
Indices: 74152766--74152873 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 53
74152756 AGCATGGCTG
* * * *
74152766 CCAGAATAGATATTGTGACAGAGTCACCAGATACAAATATTGTGGC-AGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAAATAATGTGGCGA-AGCCA
* * *
74152819 CCAGAACAGATATTTGTGGCATAGCCACCAGAAACAGATAATGTGGCGAAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCACCAGAAACAAATAATGTGGCGAAGCCA
74152873 C
1 C
74152874 TTACCAGAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
53 11 0.24
54 34 0.74
55 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAAATAATGTGGCGAAGCCA
Found at i:74153450 original size:27 final size:27
Alignment explanation
Indices: 74153435--74154140 Score: 680
Period size: 27 Copynumber: 26.3 Consensus size: 27
74153425 TACCCCACGA
74153435 GGGTATTTCGGAAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* *
74153462 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
74153489 GGGTATTTC-GATAATTCTACCCTACAG
1 GGGTATTTCGGA-AATTCTACCCTACAG
*
74153516 GGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* * * *
74153543 GGGTATTTCGGTATTTCTACCCTCCAA
1 GGGTATTTCGGAAATTCTACCCTACAG
* * **
74153570 GGGTAATTCAGTTATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
** * *
74153597 GGGTATTTTAGTAATTCTACCCTATAG
1 GGGTATTTCGGAAATTCTACCCTACAG
**
74153624 GGGTATTT-TAATAATTCTACCCTACAG
1 GGGTATTTCGGA-AATTCTACCCTACAG
* * *
74153651 GGGTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCGGAAATTCTACCCTACAG
*
74153678 GGGTATTTC-AATAATTCTACCCTACA-
1 GGGTATTTCGGA-AATTCTACCCTACAG
* ** *
74153704 GGGAATTTTAGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* *
74153731 GGGTATTTTGGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* *
74153758 GGGTATTTC-AATAATTCTACCCCACAG
1 GGGTATTTCGGA-AATTCTACCCTACAG
** * *
74153785 GGGTATTTTAGTAATTCTACCCTACAA
1 GGGTATTTCGGAAATTCTACCCTACAG
* *
74153812 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* *
74153839 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* *
74153866 GGGTATTTCGGTATTTCTACCCTACA-
1 GGGTATTTCGGAAATTCTACCCTACAG
* * ** *
74153892 --ATA-TTCAGTTACTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
** * * * *
74153916 GGGTATTTTAGTAATTTTGCCCTATAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* *
74153943 GGTTATTTC-AATAATTCTACCCTACAG
1 GGGTATTTCGGA-AATTCTACCCTACAG
** *
74153970 GGGTATTTTAGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* * *
74153997 GGGAATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* * *
74154024 GGGTATTTTGGTAATTCTACCCTAAAG
1 GGGTATTTCGGAAATTCTACCCTACAG
*
74154051 GGGTATTTC-AATAATTCTACCCTACAG
1 GGGTATTTCGGA-AATTCTACCCTACAG
*
74154078 GGGTATTTC-AATAATTCTACCCTACAG
1 GGGTATTTCGGA-AATTCTACCCTACAG
* *
74154105 GGGTATTTCGGTAATTCTACCCGACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
74154132 GGGTATTTC
1 GGGTATTTC
74154141 AATCATTTTA
Statistics
Matches: 579, Mismatches: 83, Indels: 34
0.83 0.12 0.05
Matches are distributed among these distances:
23 16 0.03
24 2 0.00
26 24 0.04
27 536 0.93
28 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGGTATTTCGGAAATTCTACCCTACAG
Found at i:74154143 original size:54 final size:54
Alignment explanation
Indices: 74153418--74154141 Score: 976
Period size: 54 Copynumber: 13.5 Consensus size: 54
74153408 GGGCAAAATG
* * * *
74153418 GTAATTTTACCCCAC-GAGGGTATTTCGGAAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAG-GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
*
74153472 GTAATTCTACCCTACAGGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCA
* * * * *
74153526 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTCCAAGGGTAATTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * *
74153580 GTTATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* *
74153634 ATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * **
74153688 ATAATTCTACCCTACA-GGGAATTTTAGTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * *
74153741 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCCACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
*
74153795 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * *
74153849 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACA---ATA-TTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * * * * *
74153899 GTTACTCTACCCTACAGGGGTATTTTAGTAATTTTGCCCTATAGGGTTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * *
74153953 ATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGAATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
** *
74154007 GTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTAAAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * *
74154061 ATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
*
74154115 GTAATTCTACCCGACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
74154142 ATCATTTTAT
Statistics
Matches: 592, Mismatches: 70, Indels: 16
0.87 0.10 0.02
Matches are distributed among these distances:
50 39 0.07
51 2 0.00
53 50 0.08
54 499 0.84
55 2 0.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
Found at i:74154163 original size:81 final size:81
Alignment explanation
Indices: 74153418--74154141 Score: 976
Period size: 81 Copynumber: 9.0 Consensus size: 81
74153408 GGGCAAAATG
* * * *
74153418 GTAATTTTACCCCAC-GAGGGTATTTCGGAAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
1 GTAATTCTACCCTACAG-GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
74153482 CCTACAGGGGTATTTC-
65 CCTACAGGGGTATTTCA
* * *
74153498 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 G-TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
* * *
74153563 CCTCCAAGGGTAATTCA
65 CCTACAGGGGTATTTCA
* * * * *
74153580 GTTATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTTAATAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
74153645 CTACAGGGGTATTTCA
66 CTACAGGGGTATTTCA
* * * *
74153661 GTAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTACA-GGGAATTTTAGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
**
74153725 CTACAGGGGTATTTTG
66 CTACAGGGGTATTTCA
* * *
74153741 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCCACAGGGGTATTTTAGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
*
74153806 CTACAAGGGTATTTCA
66 CTACAGGGGTATTTCA
* *
74153822 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
*
74153887 CTACA---ATA-TTCA
66 CTACAGGGGTATTTCA
* * * * * * * *
74153899 GTTACTCTACCCTACAGGGGTATTTTAGTAATTTTGCCCTATAGGGTTATTTCAATAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
*
74153964 CTACAGGGGTATTTTA
66 CTACAGGGGTATTTCA
* **
74153980 GTAATTCTACCCTACAGGGGAATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
*
74154045 CTAAAGGGGTATTTCA
66 CTACAGGGGTATTTCA
* * *
74154061 ATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
*
74154126 CGACAGGGGTATTTCA
66 CTACAGGGGTATTTCA
74154142 ATCATTTTAT
Statistics
Matches: 565, Mismatches: 71, Indels: 15
0.87 0.11 0.02
Matches are distributed among these distances:
77 64 0.11
78 2 0.00
80 77 0.14
81 420 0.74
82 2 0.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
CTACAGGGGTATTTCA
Found at i:74156404 original size:27 final size:26
Alignment explanation
Indices: 74156364--74156471 Score: 101
Period size: 27 Copynumber: 4.0 Consensus size: 26
74156354 AGCATGGCTG
* * * *
74156364 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAAATATTGTGGCAGAGCCA
74156390 CCAGATACAAATATTGTGGCAGAGCCA
1 CCAGA-ACAAATATTGTGGCAGAGCCA
* *
74156417 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAAATA-TTGTGGCAGAGCCA
* *
74156444 CCAGAAACAGATAATGTGGC-GAAGCCA
1 CCAG-AACAAATATTGTGGCAG-AGCCA
74156471 C
1 C
74156472 TTACCAGAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
26 11 0.16
27 51 0.73
28 8 0.11
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAAATATTGTGGCAGAGCCA
Found at i:74156462 original size:54 final size:53
Alignment explanation
Indices: 74156364--74156471 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 53
74156354 AGCATGGCTG
* * * *
74156364 CCAGAATAGATATTGTGACAGAGTCACCAGATACAAATATTGTGGC-AGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAAATAATGTGGCGA-AGCCA
* * *
74156417 CCAGAACAGATATTTGTGGCATAGCCACCAGAAACAGATAATGTGGCGAAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCACCAGAAACAAATAATGTGGCGAAGCCA
74156471 C
1 C
74156472 TTACCAGAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
53 11 0.24
54 34 0.74
55 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAAATAATGTGGCGAAGCCA
Found at i:74157048 original size:27 final size:27
Alignment explanation
Indices: 74157033--74157739 Score: 689
Period size: 27 Copynumber: 26.3 Consensus size: 27
74157023 TACCCCACGA
74157033 GGGTATTTCGGAAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* *
74157060 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
74157087 GGGTATTTC-GATAATTCTACCCTACAG
1 GGGTATTTCGGA-AATTCTACCCTACAG
*
74157114 GGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* * * *
74157141 GGGTATTTCGGTATTTCTACCCTCCAA
1 GGGTATTTCGGAAATTCTACCCTACAG
* * **
74157168 GGGTAATTCAGTTATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
** * *
74157195 GGGTATTTTAGTAATTCTACCCTATAG
1 GGGTATTTCGGAAATTCTACCCTACAG
**
74157222 GGGTATTT-TAATAATTCTACCCTACAG
1 GGGTATTTCGGA-AATTCTACCCTACAG
* * *
74157249 GGGTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCGGAAATTCTACCCTACAG
*
74157276 GGGTATTTC-AATAATTCTACCCTACAG
1 GGGTATTTCGGA-AATTCTACCCTACAG
* ** *
74157303 GGGAATTTTAGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* *
74157330 GGGTATTTTGGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* *
74157357 GGGTATTTC-AATAATTCTACCCCACAG
1 GGGTATTTCGGA-AATTCTACCCTACAG
** * *
74157384 GGGTATTTTAGTAATTCTACCCTACAA
1 GGGTATTTCGGAAATTCTACCCTACAG
* *
74157411 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* *
74157438 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* * *
74157465 GGGTATTTCGGTATTTCTACCCTATA-
1 GGGTATTTCGGAAATTCTACCCTACAG
* * ** *
74157491 --ATA-TTCAGTTACTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
** * * * *
74157515 GGGTATTTTAGTAATTTTGCCCTATAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* *
74157542 GGTTATTTC-AATAATTCTACCCTACAG
1 GGGTATTTCGGA-AATTCTACCCTACAG
* *
74157569 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* * *
74157596 GGGAATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
* * *
74157623 GGGTATTTTGGTAATTCTACCCTAAAG
1 GGGTATTTCGGAAATTCTACCCTACAG
*
74157650 GGGTATTTC-AATAATTCTACCCTACAG
1 GGGTATTTCGGA-AATTCTACCCTACAG
*
74157677 GGGTATTTC-AATAATTCTACCCTACAG
1 GGGTATTTCGGA-AATTCTACCCTACAG
* *
74157704 GGGTATTTCGGTAATTCTACCCGACAG
1 GGGTATTTCGGAAATTCTACCCTACAG
74157731 GGGTATTTC
1 GGGTATTTC
74157740 AATCATTTTA
Statistics
Matches: 581, Mismatches: 83, Indels: 32
0.83 0.12 0.05
Matches are distributed among these distances:
23 15 0.03
24 2 0.00
26 3 0.01
27 560 0.96
28 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGGTATTTCGGAAATTCTACCCTACAG
Found at i:74157742 original size:54 final size:54
Alignment explanation
Indices: 74157016--74157740 Score: 985
Period size: 54 Copynumber: 13.5 Consensus size: 54
74157006 GGGCAAAATG
* * * *
74157016 GTAATTTTACCCCAC-GAGGGTATTTCGGAAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAG-GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
*
74157070 GTAATTCTACCCTACAGGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCA
* * * * *
74157124 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTCCAAGGGTAATTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * *
74157178 GTTATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* *
74157232 ATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * **
74157286 ATAATTCTACCCTACAGGGGAATTTTAGTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * *
74157340 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCCACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
*
74157394 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * *
74157448 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTATA---ATA-TTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * * * * *
74157498 GTTACTCTACCCTACAGGGGTATTTTAGTAATTTTGCCCTATAGGGTTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* *
74157552 ATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGAATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
** *
74157606 GTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTAAAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * *
74157660 ATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
*
74157714 GTAATTCTACCCGACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
74157741 ATCATTTTAT
Statistics
Matches: 592, Mismatches: 72, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
50 40 0.07
51 2 0.00
53 3 0.01
54 545 0.92
55 2 0.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
Found at i:74157762 original size:81 final size:81
Alignment explanation
Indices: 74157016--74157740 Score: 985
Period size: 81 Copynumber: 9.0 Consensus size: 81
74157006 GGGCAAAATG
* * * *
74157016 GTAATTTTACCCCAC-GAGGGTATTTCGGAAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
1 GTAATTCTACCCTACAG-GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
74157080 CCTACAGGGGTATTTC-
65 CCTACAGGGGTATTTCA
* * *
74157096 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 G-TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
* * *
74157161 CCTCCAAGGGTAATTCA
65 CCTACAGGGGTATTTCA
* * * * *
74157178 GTTATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTTAATAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
74157243 CTACAGGGGTATTTCA
66 CTACAGGGGTATTTCA
* * * *
74157259 GTAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTACAGGGGAATTTTAGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
**
74157324 CTACAGGGGTATTTTG
66 CTACAGGGGTATTTCA
* * *
74157340 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCCACAGGGGTATTTTAGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
*
74157405 CTACAAGGGTATTTCA
66 CTACAGGGGTATTTCA
* *
74157421 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
* *
74157486 CTATA---ATA-TTCA
66 CTACAGGGGTATTTCA
* * * * * * * *
74157498 GTTACTCTACCCTACAGGGGTATTTTAGTAATTTTGCCCTATAGGGTTATTTCAATAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
74157563 CTACAGGGGTATTTCA
66 CTACAGGGGTATTTCA
* **
74157579 GTAATTCTACCCTACAGGGGAATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
*
74157644 CTAAAGGGGTATTTCA
66 CTACAGGGGTATTTCA
* * *
74157660 ATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
*
74157725 CGACAGGGGTATTTCA
66 CTACAGGGGTATTTCA
74157741 ATCATTTTAT
Statistics
Matches: 567, Mismatches: 71, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
77 63 0.11
78 2 0.00
80 3 0.01
81 497 0.88
82 2 0.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
CTACAGGGGTATTTCA
Found at i:74159832 original size:6 final size:6
Alignment explanation
Indices: 74159802--74159845 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
74159792 AAGAAACATT
* *
74159802 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT
74159846 GTGATTGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 1 0.03
6 30 0.94
7 1 0.03
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:74160011 original size:27 final size:26
Alignment explanation
Indices: 74159965--74160070 Score: 113
Period size: 27 Copynumber: 4.0 Consensus size: 26
74159955 CATGGCTGCT
* * *
74159965 AGAACAGATATTATGACAGAGTCACC
1 AGAACAGATATTGTGGCAGAGCCACC
74159991 AGATACAGATATTGTGGCAGAGCCACC
1 AGA-ACAGATATTGTGGCAGAGCCACC
* *
74160018 AGAATAGATATTTGTGGCATAGCCACC
1 AGAACAGATA-TTGTGGCAGAGCCACC
* * *
74160045 AGAAATAGATAATGTGGCAAAGCCAC
1 AG-AACAGATATTGTGGCAGAGCCAC
74160071 TTAACAGAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 9 0.13
27 53 0.76
28 8 0.11
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.20
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAGCCACC
Found at i:74161579 original size:27 final size:27
Alignment explanation
Indices: 74160596--74161577 Score: 1212
Period size: 27 Copynumber: 36.4 Consensus size: 27
74160586 TAACCCATGA
* *
74160596 GGGTATTTCGGTAATTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTACAG
74160623 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
*
74160650 GGGTGTTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
*
74160677 GGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
74160704 GGGTATTTCAGTAATTCTATCCTGCAA
1 GGGTATTTCAGTAATTCTACCCTACAG
*
74160731 GGGTATTTCAATAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * * *
74160758 AGGTATTTTAGTAATTCTACCCTGCAA
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
74160785 GGGTATTTCAGTAATTCTACCCAACAC
1 GGGTATTTCAGTAATTCTACCCTACAG
* * * *
74160812 GGGTATTTCGGTAATTCTATCCTGCAA
1 GGGTATTTCAGTAATTCTACCCTACAG
*
74160839 GGGTATTTCAGTAATTCTATCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
74160866 GGGTATTTCGGTATTTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
74160893 GGGTATTTCGGTATTTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
74160920 GGGTATTTCAGTAATTCTACCCTCCAA
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
74160947 GGGTATTTCAATAATTCTACCCTATAA
1 GGGTATTTCAGTAATTCTACCCTACAG
*
74160974 GGGTATTTTAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * ** * * *
74161001 GGGTATTTCGGTATTTAAACCGTATAA
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
74161028 GGGTAATTCAGTTATTCTACCTTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
74161055 GGGTATTTTAGTAACTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
74161082 GGGTATTTCAATAATTATACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
74161109 GGGAATTTCAGTAATTCTACCCTACTG
1 GGGTATTTCAGTAATTCTACCCTACAG
**
74161136 GGGTATTTTGGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
74161163 GGGTATTTTAGTAATTCTATCCTACAT
1 GGGTATTTCAGTAATTCTACCCTACAG
*
74161190 GGGTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
74161217 GGGTATTTC-GATATTTCTACCCTACAA
1 GGGTATTTCAG-TAATTCTACCCTACAG
* *
74161244 GGGTAATTCAGTTATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * * * *
74161271 GGGTATTTTAGTAATTTTGCCCTATAA
1 GGGTATTTCAGTAATTCTACCCTACAG
* * * *
74161298 GGCTATTTCAATAATTTTACCCTGCAG
1 GGGTATTTCAGTAATTCTACCCTACAG
74161325 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
74161352 GGGTATTT-TGATAATTCTACACTACAG
1 GGGTATTTCAG-TAATTCTACCCTACAG
* *
74161379 GGGTATTTCAATAATTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTACAG
74161406 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
** *
74161433 GGGTATTTTGGTAATTCTACCCTAAAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
74161460 GGGAATTTAAATAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
74161487 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
74161514 GGGTATTTCGGTAATTCTATCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* **
74161541 GGGTATTTCAATAGCTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
74161568 GGGTATTTCA
1 GGGTATTTCA
74161578 ATCATTTTGT
Statistics
Matches: 812, Mismatches: 139, Indels: 8
0.85 0.14 0.01
Matches are distributed among these distances:
26 2 0.00
27 809 1.00
28 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:74161613 original size:27 final size:26
Alignment explanation
Indices: 74161583--74161651 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 26
74161573 TTTCAATCAT
74161583 TTTGTAAATCGAGGGTAAAATGGTAA
1 TTTGTAAATCGAGGGTAAAATGGTAA
**
74161609 CTTTGTAAATCGAGGGTACTATGGTAA
1 -TTTGTAAATCGAGGGTAAAATGGTAA
74161636 TTT-TACAAGTCGAGGG
1 TTTGTA-AA-TCGAGGG
74161652 ATTTCAGTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
25 2 0.05
26 5 0.13
27 31 0.82
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.32
Consensus pattern (26 bp):
TTTGTAAATCGAGGGTAAAATGGTAA
Found at i:74165651 original size:40 final size:41
Alignment explanation
Indices: 74165589--74165744 Score: 192
Period size: 40 Copynumber: 3.9 Consensus size: 41
74165579 GAGCATTTGA
* *
74165589 ATCATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TG
1 ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGATG
* * * *
74165629 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGATG
*
74165670 -TCATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-
1 ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGATG
* * * *
74165709 ACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCT
74165745 TGTGGTTATA
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
40 98 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (41 bp):
ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGATG
Found at i:74165756 original size:80 final size:80
Alignment explanation
Indices: 74165590--74165763 Score: 210
Period size: 80 Copynumber: 2.2 Consensus size: 80
74165580 AGCATTTGAA
* * ** *
74165590 TCATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGG
1 TCATATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGG
*
74165655 CATTCGTGCGAGTTG
66 CATTCGTGCGAGTGG
* *
74165670 TCATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAATCCGGGTTAAGACCCGAAG
1 TCATATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGACCAAATCCGGGCTAAGACCCGAAG
**
74165734 GCAATT-GTGCTTGTGG
65 GC-ATTCGTGCGAGTGG
*
74165750 TTATATCC-GGCTAA
1 TCATATCCGGGCTAA
74165764 ATTCCGAAGA
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 6 0.07
80 71 0.88
81 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCATATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGG
CATTCGTGCGAGTGG
Found at i:74165758 original size:40 final size:40
Alignment explanation
Indices: 74165589--74165763 Score: 178
Period size: 40 Copynumber: 4.4 Consensus size: 40
74165579 GAGCATTTGA
* * *
74165589 ATCATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTG
1 ATCATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
* *
74165629 ATTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG
1 ATCATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TG
* *
74165670 -TCATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-
1 ATCATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TG
* * * *
74165709 ACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTG
1 ATCATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
* *
74165749 GTTATATCC-GGCTAA
1 ATCATATCCGGGCTAA
74165764 ATTCCGAAGA
Statistics
Matches: 110, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
Found at i:74173619 original size:40 final size:41
Alignment explanation
Indices: 74173560--74173726 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 41
74173550 CATTTGAATC
* *
74173560 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGATGATT
* * *
74173600 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGATGATT
* * * **
74173640 ATATCCGGGCTAAGGCCCGAAGGCATTTGTGCAAGAT-ACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGATGATT
* * * * * *
74173680 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTG-TGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGATGATT
74173720 ATATCCG
1 ATATCCG
74173727 CCTAAATTCC
Statistics
Matches: 103, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 100 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGATGATT
Found at i:74173721 original size:80 final size:80
Alignment explanation
Indices: 74173560--74173726 Score: 194
Period size: 80 Copynumber: 2.1 Consensus size: 80
74173550 CATTTGAATC
* * * ** *
74173560 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGGCCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCA
*
74173625 TTCATGCGAGTTGTT
66 TTCATGCGAGTGGTT
* *
74173640 ATATCCGGGCTAAGGCCCGAAGGCATTTGTGCAAGAT-ACCAAATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGGCCCGAAGGCATTTATGCAAG-TGACCAAATCCGGGCTAAGACCCGAAGGC
* **
74173704 AATT-GTGCTTGTGGTT
65 -ATTCATGCGAGTGGTT
74173720 ATATCCG
1 ATATCCG
74173727 CCTAAATTCC
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
80 69 0.95
81 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGGCCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCA
TTCATGCGAGTGGTT
Found at i:74175122 original size:27 final size:27
Alignment explanation
Indices: 74175073--74175132 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
74175063 GGTATTACAG
* *
74175073 AGCCACCAGAACAGATATTTGTGGCAT
1 AGCCACCAGAACAGATATATGTGGCAA
74175100 AGCCACCAGAAACAGATA-ATGTGGCAA
1 AGCCACCAG-AACAGATATATGTGGCAA
74175127 AGCCAC
1 AGCCAC
74175133 TTAACAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 22 0.73
28 8 0.27
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (27 bp):
AGCCACCAGAACAGATATATGTGGCAA
Found at i:74175708 original size:27 final size:27
Alignment explanation
Indices: 74175694--74175820 Score: 186
Period size: 27 Copynumber: 4.7 Consensus size: 27
74175684 TACCCCACGA
*
74175694 GGGTATTTCGATAATTCTACCCTATAG
1 GGGTATTTCGATAATTCTACCCTACAG
74175721 GGGTATTTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
74175748 GGGTAATTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
74175775 GGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
74175802 GGGTATTTCGGTAATTCTA
1 GGGTATTTCGATAATTCTA
74175821 TGTTAGGCAC
Statistics
Matches: 94, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
26 1 0.01
27 93 0.99
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:74175742 original size:54 final size:54
Alignment explanation
Indices: 74175677--74175820 Score: 202
Period size: 54 Copynumber: 2.7 Consensus size: 54
74175667 AGGAAAAAGG
* * *
74175677 GTAATTTTACCCCAC-GAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAG-GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
* *
74175731 GTAATTCTACCCTACAGGGGTAATTC-AGTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCA
*
74175785 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTA
74175821 TGTTAGGCAC
Statistics
Matches: 80, Mismatches: 7, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
53 1 0.01
54 78 0.98
55 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
Found at i:74175899 original size:22 final size:22
Alignment explanation
Indices: 74175851--74175909 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
74175841 GTAAATACAT
74175851 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACGAAGCCATAGTCAAG
* * * *
74175873 ATGGCACGAAGCCATATTTAGG
1 TTGGCACGAAGCCATAGTCAAG
*
74175895 TTGGCACAAAGCCAT
1 TTGGCACGAAGCCAT
74175910 CGATAACGAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACGAAGCCATAGTCAAG
Found at i:74176267 original size:27 final size:27
Alignment explanation
Indices: 74176238--74176988 Score: 988
Period size: 27 Copynumber: 27.9 Consensus size: 27
74176228 GGGCAAAAGG
* * *
74176238 GTAATTTTACCCCAC-GAGGGTATTTCG
1 GTAATTCTACCCTACAG-GGGTATTTCA
*
74176265 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74176292 GTAATTCTACCCTACAGGGGTAATTAA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
74176319 GTAATTCTACCCTACA-GGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
**
74176345 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
74176372 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
74176399 GTAATTCTACCCTACAGGGGTAATTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
74176426 GTAATTCTACCCTACAGGGGTATTTCT
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74176453 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
74176480 GTAATTCTATCCTGCAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
** * *
74176507 GTAATTCTGTCCTACAGGGTTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
74176534 GTATTTCTACCCTACAGTGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74176561 GTATTTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
74176588 GTATTTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
74176615 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74176642 ATAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74176669 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
74176696 GTATTTCTACCCTACAAGGGTAATTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74176723 GTTATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
74176750 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74176777 ATAATTCTACCCTACAGGGGAATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
**
74176804 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
74176831 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74176858 ATAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74176885 GTAATTCTACCCTACAGTGGTATTTAA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74176912 ATAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74176939 GTAATT-TTCCCTACATGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
74176965 ATAGTTCTA-CCTTCAGGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
74176989 AAATCATTTT
Statistics
Matches: 641, Mismatches: 80, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
26 57 0.09
27 583 0.91
28 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:74176324 original size:561 final size:560
Alignment explanation
Indices: 74175258--74176380 Score: 2077
Period size: 561 Copynumber: 2.0 Consensus size: 560
74175248 CATCAACAAA
74175258 TATGTTAGGCACACAGCCACAGGTAAATACATTTGGCACGAAGCCATAGTCAAGATGGCACAAAG
1 TATGTTAGGCACACAGCCACAGGTAAATACATTTGGCACGAAGCCATAGTCAAGATGGCACAAAG
**
74175323 GTATATTTAGGTTGGCACAAAGCCATCGATAACGAATCTATAATCGGCACGAAGCCCATAATAAC
66 CCATATTTAGGTTGGCACAAAGCCATCGATAACGAATCTATAATCGGCACGAAGCCCATAATAAC
*
74175388 AGCACACAGCCTTCGGAAACATGATCGGCACTCAGCCATCGATCGGTCCACAGTCAGCTCGGGCT
131 AGCACACAGCCTTCGGAAACATGATCGACACTCAGCCATCGATCGGTCCACAGTCAGCTCGGGCT
74175453 ACCCGTGTGACCTTAACAGATTAGATCTTCCTCCATACGAAATCCCAGCCCATGCAACATGTCAT
196 ACCCGTGTGACCTTAACAGATTAGATCTTCCTCCATACGAAATCCCAGCCCATGCAACATGTCAT
*
74175518 GTATGCAGAATGTCATGCCCATATTTGAATCAAACAATCACAGTCAAGTCATTCACATCACCGAC
261 GTATGCAGAATGTCATGCCCATATTTGAATCAAACAATCACAGTCAAGTCATTCACATCACCAAC
*
74175583 ATATATTCACAATCAAATCCGTCAACCACACAATCCAAGTCATTCATTTTCCCATAAGGGCAAAA
326 ATATATTCACAATCAAATCCGTCAACCACACAATCCAAGTCATTCATTTGCCCATAAGGGCAAAA
74175648 CAGTCATTTAACACCCTAGAGGAAAAAGGGTAATTTTACCCCACGAGGGTATTTCGATAATTCTA
391 CAGTCATTTAACACCCTAGAGGAAAAAGGGTAATTTTACCCCACGAGGGTATTTCGATAATTCTA
*
74175713 CCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGGGTAATTCAGTAATTCTACCCTACAGGGG
456 CCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGGGTAATTAAGTAATTCTACCCTACA-GGG
74175778 TATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTC
520 TATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTC
*
74175819 TATGTTAGGCACACAGCCACAGGTAAATACATTTGGCACGAAGCCATAGTCAAGATGGCACGAAG
1 TATGTTAGGCACACAGCCACAGGTAAATACATTTGGCACGAAGCCATAGTCAAGATGGCACAAAG
* *
74175884 CCATATTTAGGTTGGCACAAAGCCATCGATAACGAGTCTATAATCGGTACGAAGCCCATAATAAC
66 CCATATTTAGGTTGGCACAAAGCCATCGATAACGAATCTATAATCGGCACGAAGCCCATAATAAC
74175949 AGCACACAGCCTTCGGAAACATGATCGACACTCAGCCATCGATCGGTCCACAGTC-GCCTCGGGC
131 AGCACACAGCCTTCGGAAACATGATCGACACTCAGCCATCGATCGGTCCACAGTCAG-CTCGGGC
*
74176013 TACCCGTGTGACCTTAACAGATTAGATCTTCCTCCGTACGAAATCCCAGCCCATGCAACATGTCA
195 TACCCGTGTGACCTTAACAGATTAGATCTTCCTCCATACGAAATCCCAGCCCATGCAACATGTCA
*
74176078 TGTATGTAGAATGTCATGCCCATATTTGAATCAAACAATCACAGTCAAGTCATTCACATCACCAA
260 TGTATGCAGAATGTCATGCCCATATTTGAATCAAACAATCACAGTCAAGTCATTCACATCACCAA
*
74176143 CATATATTCACAATCCAATCCGTCAACCACACAATCCAAGTCATTCATTTGCCCATAAGGGCAAA
325 CATATATTCACAATCAAATCCGTCAACCACACAATCCAAGTCATTCATTTGCCCATAAGGGCAAA
* * *
74176208 ACAGTCATTTAACACCCTAGGGGCAAAAGGGTAATTTTACCCCACGAGGGTATTTCGGTAATTCT
390 ACAGTCATTTAACACCCTAGAGGAAAAAGGGTAATTTTACCCCACGAGGGTATTTCGATAATTCT
74176273 ACCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGGGTAATTAAGTAATTCTACCCTACAGGG
455 ACCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGGGTAATTAAGTAATTCTACCCTACAGGG
*
74176338 TATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTC
520 TATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTC
74176379 TA
1 TA
74176381 CCCTATAGGG
Statistics
Matches: 545, Mismatches: 16, Indels: 3
0.97 0.03 0.01
Matches are distributed among these distances:
560 46 0.08
561 499 0.92
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (560 bp):
TATGTTAGGCACACAGCCACAGGTAAATACATTTGGCACGAAGCCATAGTCAAGATGGCACAAAG
CCATATTTAGGTTGGCACAAAGCCATCGATAACGAATCTATAATCGGCACGAAGCCCATAATAAC
AGCACACAGCCTTCGGAAACATGATCGACACTCAGCCATCGATCGGTCCACAGTCAGCTCGGGCT
ACCCGTGTGACCTTAACAGATTAGATCTTCCTCCATACGAAATCCCAGCCCATGCAACATGTCAT
GTATGCAGAATGTCATGCCCATATTTGAATCAAACAATCACAGTCAAGTCATTCACATCACCAAC
ATATATTCACAATCAAATCCGTCAACCACACAATCCAAGTCATTCATTTGCCCATAAGGGCAAAA
CAGTCATTTAACACCCTAGAGGAAAAAGGGTAATTTTACCCCACGAGGGTATTTCGATAATTCTA
CCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGGGTAATTAAGTAATTCTACCCTACAGGGT
ATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTC
Found at i:74182910 original size:13 final size:13
Alignment explanation
Indices: 74182892--74182919 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
74182882 TTCACTAAGG
74182892 TTTGTAAGCTTAA
1 TTTGTAAGCTTAA
74182905 TTTGTAAGCTTAA
1 TTTGTAAGCTTAA
74182918 TT
1 TT
74182920 AATCATGTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (13 bp):
TTTGTAAGCTTAA
Found at i:74185569 original size:77 final size:77
Alignment explanation
Indices: 74185442--74185596 Score: 301
Period size: 77 Copynumber: 2.0 Consensus size: 77
74185432 TGAAATGCCG
*
74185442 AAATTTCGGCATTTCAGCTTTTGCCGAATTGAACTAAGGAAGGGTGTTCGGTACACACCTGATTC
1 AAATTTCGGCATTTCAGCTTTTGCCGAACTGAACTAAGGAAGGGTGTTCGGTACACACCTGATTC
74185507 GCGACGACTGCT
66 GCGACGACTGCT
74185519 AAATTTCGGCATTTCAGCTTTTGCCGAACTGAACTAAGGAAGGGTGTTCGGTACACACCTGATTC
1 AAATTTCGGCATTTCAGCTTTTGCCGAACTGAACTAAGGAAGGGTGTTCGGTACACACCTGATTC
74185584 GCGACGACTGCT
66 GCGACGACTGCT
74185596 A
1 A
74185597 CTGAGATCAC
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (77 bp):
AAATTTCGGCATTTCAGCTTTTGCCGAACTGAACTAAGGAAGGGTGTTCGGTACACACCTGATTC
GCGACGACTGCT
Found at i:74196224 original size:27 final size:27
Alignment explanation
Indices: 74196153--74196225 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
74196143 TACCTTGGAC
*
74196153 TTGTAAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAAATACCCCCGAT
* * * *
74196180 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTACCAAAATACCCCCGAT
* *
74196207 TTGTAAAATCACTAAAATA
1 TTGTAAAATTACCAAAATA
74196226 AGATAGAATT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCCGAT
Found at i:74196270 original size:27 final size:27
Alignment explanation
Indices: 74196230--74196424 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
74196220 AAAATAAGAT
**
74196230 AGAATTACAATTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
74196257 AGAATTATCGTTTTACCCTCGATCTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
74196284 AAAATTACCGTTTTACCC-CGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* * *
74196310 AGAATTACCATTTTACCCTTGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
* * * *
74196337 AAAATTACCATTTTACCCTTGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
74196364 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* * * *
74196391 AGAATTGCTGTTTTATCCTTGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
74196418 AAAATTA
1 AGAATTA
74196425 TTGAATACCC
Statistics
Matches: 145, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 23 0.16
27 122 0.84
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (27 bp):
AGAATTACCGTTTTACCCTCGATTTAC
Found at i:74196370 original size:80 final size:81
Alignment explanation
Indices: 74196230--74196424 Score: 257
Period size: 80 Copynumber: 2.4 Consensus size: 81
74196220 AAAATAAGAT
* * * *
74196230 AGAATTACAATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATCTACAAAATTACCGT
1 AGAATTACAATTTTACCCTTGATTTACAAAATTACCATTTTACCCTCGATCTACAAAATTACCGT
74196295 TTTACCC-CGATTTAC
66 TTTACCCTCGATTTAC
* * * * * *
74196310 AGAATTACCATTTTACCCTTGATTTATAAAATTACCATTTTACCCTTGATTTATAGAATTACCGT
1 AGAATTACAATTTTACCCTTGATTTACAAAATTACCATTTTACCCTCGATCTACAAAATTACCGT
74196375 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* ** *
74196391 AGAATTGCTGTTTTATCCTTGATTTACAAAATTA
1 AGAATTACAATTTTACCCTTGATTTACAAAATTA
74196425 TTGAATACCC
Statistics
Matches: 99, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 62 0.63
81 37 0.37
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (81 bp):
AGAATTACAATTTTACCCTTGATTTACAAAATTACCATTTTACCCTCGATCTACAAAATTACCGT
TTTACCCTCGATTTAC
Found at i:74196434 original size:107 final size:105
Alignment explanation
Indices: 74196232--74196453 Score: 259
Period size: 107 Copynumber: 2.1 Consensus size: 105
74196222 AATAAGATAG
* *
74196232 AATTACAATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATCTACAAAATTACCGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATCTACAAAATTACCGTTT
* * *
74196297 TACCCCGATTTACAGAATTACCATTTTACCCTT-GATTTATAA
66 TACCCCGATTTACAAAATT--CATTATACCCTTAG-TTTACAA
* * * * * *
74196339 AATTACCATTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTGCTGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATCTACAAAATTACCGTTT
**
74196404 TATCCTTGATTTACAAAATT-ATTGAATACCCTTAGTTTACAA
66 TA-CCCCGATTTACAAAATTCATT--ATACCCTTAGTTTACAA
74196446 AATTACCA
1 AATTACCA
74196454 AAATACCGTT
Statistics
Matches: 98, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
105 3 0.03
107 80 0.82
108 15 0.15
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (105 bp):
AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATCTACAAAATTACCGTTT
TACCCCGATTTACAAAATTCATTATACCCTTAGTTTACAA
Found at i:74196474 original size:134 final size:134
Alignment explanation
Indices: 74196228--74196480 Score: 296
Period size: 134 Copynumber: 1.9 Consensus size: 134
74196218 CTAAAATAAG
74196228 ATAGAATTACAATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATCTACAAAATTACC
1 ATAGAATTACAATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATCTACAAAATTACC
** * *** *
74196293 GTTTTACCCCGATTTACAGAATTACCATTTTACCCTTGATTTATAAAATTACCATTTTACCCTTG
66 GTAATACCCCGATTTACAAAATTACCAAAATACCCTTGATTCATAAAATTACCATTTTACCCTTG
74196358 ATTT
131 ATTT
** * * * * *
74196362 ATAGAATTACCGTTTTACCCTCGATTTACAGAATT-GCTGTTTTATCCTTGATTTACAAAATTAT
1 ATAGAATTACAATTTTACCCTCGATTTACAGAATTATC-GTTTTACCCTCGATCTACAAAATTAC
* ** *
74196426 TG-AATACCCTTAGTTTACAAAATTACCAAAATACCGTTGA-TCAGTAAAATTACCA
65 CGTAATACCCCGA-TTTACAAAATTACCAAAATACCCTTGATTCA-TAAAATTACCA
74196481 AAATACCCCT
Statistics
Matches: 98, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
133 9 0.09
134 89 0.91
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.38
Consensus pattern (134 bp):
ATAGAATTACAATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATCTACAAAATTACC
GTAATACCCCGATTTACAAAATTACCAAAATACCCTTGATTCATAAAATTACCATTTTACCCTTG
ATTT
Found at i:74196529 original size:81 final size:81
Alignment explanation
Indices: 74196428--74196594 Score: 221
Period size: 81 Copynumber: 2.1 Consensus size: 81
74196418 AAAATTATTG
* **
74196428 AATACCCTTAGTTTACAAAATTACCAAAATACCGTTGA-TCAGTAAAATTACCAAAATACCCCTG
1 AATACCCCTAGTTTACAAAATTACCAAAATACCCCTGACT-AGTAAAATTACCAAAATACCCCTG
*
74196492 GTTTGTAAAATTA-CTAA
65 ATTTGTAAAATTATC-AA
** * *
74196509 AATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGACTTGTAAAATTACCAAAATACCCCTGA
1 AATACCCCTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAAAATACCCCTGA
*
74196574 TTTGTGAAATTATCAA
66 TTTGTAAAATTATCAA
74196590 AATAC
1 AATAC
74196595 TCTCGATTTG
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
81 73 0.97
82 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (81 bp):
AATACCCCTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAAAATACCCCTGA
TTTGTAAAATTATCAA
Found at i:74196605 original size:27 final size:27
Alignment explanation
Indices: 74196444--74196594 Score: 196
Period size: 27 Copynumber: 5.6 Consensus size: 27
74196434 CTTAGTTTAC
** **
74196444 AAAATTACCAAAATACCGTTGATCAGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
74196471 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
74196498 AAAATTACTAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
* *
74196525 AAAATTACTAAAATACCCCTGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
74196552 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
74196579 GAAATTATCAAAATAC
1 AAAATTACCAAAATAC
74196595 TCTCGATTTG
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
27 109 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:74196645 original size:27 final size:27
Alignment explanation
Indices: 74196613--74196836 Score: 351
Period size: 27 Copynumber: 8.3 Consensus size: 27
74196603 TGTATAATAT
*
74196613 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
74196640 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
74196667 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
74196694 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
74196721 CGAAATACCCCTATAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
74196748 CGCAATA-CCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
74196774 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
74196801 CGAAATACCCCTGTAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
74196828 CGAGATACC
1 CGAAATACC
74196837 TTGTGAGGTA
Statistics
Matches: 181, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
26 23 0.13
27 158 0.87
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:74196692 original size:134 final size:134
Alignment explanation
Indices: 74196527--74196828 Score: 371
Period size: 134 Copynumber: 2.3 Consensus size: 134
74196517 TAGTTTGTAA
* ** ** *
74196527 AATTACTAAAATACCCCTG-ACTTGTAAAATTACCAAAATACCCCTG-ATTTGT-GAAATTATCA
1 AATTACTGAAATACCCCTGTA-GGGTAAAATTACCAAAATACCCCTGTA-GGGTAG-AATTACCA
* ** *
74196589 AAATACTCTCGAT-TTGTATAA-TATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCT
63 AAATAC-CCCGATAGGGTAGAATTATCGAAATACCC-TGTAGGGTAGAATTACCGAAATACCCCT
74196652 ATAGGGTAG
126 ATAGGGTAG
* ** *
74196661 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAA
* *
74196726 TACCCCTATAGGGTAGAATTATCGCAATACCCTGTAGGGTAGAATTACCGAAATACCCCTATAGG
66 TACCCCGATAGGGTAGAATTATCGAAATACCCTGTAGGGTAGAATTACCGAAATACCCCTATAGG
74196791 GTAG
131 GTAG
*
74196795 AATTACCGAAATACCCCTGTAGGGTAAAATTACC
1 AATTACTGAAATACCCCTGTAGGGTAAAATTACC
74196829 GAGATACCTT
Statistics
Matches: 144, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
133 4 0.03
134 125 0.87
135 15 0.10
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (134 bp):
AATTACTGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAA
TACCCCGATAGGGTAGAATTATCGAAATACCCTGTAGGGTAGAATTACCGAAATACCCCTATAGG
GTAG
Found at i:74196852 original size:80 final size:79
Alignment explanation
Indices: 74196613--74196854 Score: 351
Period size: 80 Copynumber: 3.0 Consensus size: 79
74196603 TGTATAATAT
* *
74196613 CGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCC
1 CGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCG-AATA-CCC
74196678 TGTAGGGTAGAATTAC
64 TGTAGGGTAGAATTAC
* *
74196694 TGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCGCAATACCCT
1 CGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCG-AATACCCT
74196759 GTAGGGTAGAATTAC
65 GTAGGGTAGAATTAC
* * * *
74196774 CGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAAAATTACCGAGATACCTT
1 CGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCGA-ATACCCT
*
74196839 GT-GAGGTAAAATTAC
65 GTAG-GGTAGAATTAC
74196854 C
1 C
74196855 ATTTTTCCCC
Statistics
Matches: 147, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
79 2 0.01
80 89 0.61
81 56 0.38
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (79 bp):
CGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCGAATACCCTG
TAGGGTAGAATTAC
Found at i:74197291 original size:31 final size:31
Alignment explanation
Indices: 74197256--74197334 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
74197246 TTACATTCAC
* * *
74197256 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
* * *
74197287 ATTCTAATTCTGATTCAGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
74197318 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
74197335 AGTTTTGATA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:74197321 original size:6 final size:6
Alignment explanation
Indices: 74197256--74197334 Score: 54
Period size: 6 Copynumber: 12.8 Consensus size: 6
74197246 TTACATTCAC
* * * *
74197256 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTA ATTCTG ATTCAG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
74197305 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCT
74197335 AGTTTTGATA
Statistics
Matches: 55, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
5 3 0.05
6 46 0.84
7 4 0.07
8 2 0.04
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:74198090 original size:20 final size:21
Alignment explanation
Indices: 74198065--74198103 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
74198055 ATTCAAATTA
*
74198065 TCCATCCGTTA-CACACCAGC
1 TCCATCCCTTATCACACCAGC
74198085 TCCATCCCTTATCACACCA
1 TCCATCCCTTATCACACCA
74198104 TAGGGGGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.26, C:0.46, G:0.05, T:0.23
Consensus pattern (21 bp):
TCCATCCCTTATCACACCAGC
Found at i:74212153 original size:39 final size:39
Alignment explanation
Indices: 74212099--74212280 Score: 249
Period size: 40 Copynumber: 4.6 Consensus size: 39
74212089 AGTGGCTAAT
*
74212099 TCCGGGCTAAGTCCCGAAGGCATTCTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGCTACTATA
* *
74212138 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGCTACTATA
* *
74212178 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGCTACTATA
* * *
74212218 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATA
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGCTACTATA
*
74212257 ACCGGGCTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
74212281 TGAGCTAGTG
Statistics
Matches: 132, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
39 59 0.45
40 73 0.55
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGCTACTATA
Found at i:74212281 original size:79 final size:80
Alignment explanation
Indices: 74212100--74212282 Score: 271
Period size: 79 Copynumber: 2.3 Consensus size: 80
74212090 GTGGCTAATT
* *
74212100 CCGGGCTAAGTCCCGAAGGCA-TTCTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* ** *
74212164 TGCGAGCTATTATAT
66 TGCAAGCTACCATAA
* *
74212179 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
74212243 TGCAAGTTACCATAA
66 TGCAAGCTACCATAA
74212258 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74212283 AGCTAGTGGC
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
79 80 0.85
80 14 0.15
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACCATAA
Found at i:74212304 original size:79 final size:78
Alignment explanation
Indices: 74212100--74212315 Score: 251
Period size: 79 Copynumber: 2.7 Consensus size: 78
74212090 GTGGCTAATT
*
74212100 CCGGGCTAAGTCCCGAAGGCATTCTGCGAGCTA--CTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 CCGGGCTAAGTCCCGAAGGCATT-T--GAGCTAGTCTATATCCGGGCTAAGTCCCGAAGGCATTT
* ** *
74212163 GTGCGAGCTATTATAT
63 GTGCAAGCTACCATAA
* *
74212179 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTCTA-TAT-CCGGGCTAAGTCCCGAAGGCATTTG
*
74212243 TGCAAGTTACCATAA
64 TGCAAGCTACCATAA
**
74212258 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGT--CTATATCCGGGCTAAGTCCCGAAGG
74212316 TACTTGGTTT
Statistics
Matches: 118, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
76 4 0.03
77 2 0.02
78 4 0.03
79 101 0.86
80 2 0.02
81 3 0.03
82 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTCTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
CAAGCTACCATAA
Found at i:74212315 original size:39 final size:39
Alignment explanation
Indices: 74212060--74212315 Score: 245
Period size: 40 Copynumber: 6.5 Consensus size: 39
74212050 CGGATGATAA
*
74212060 CCGGGCTAAGTCCCG-AGTGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGT-ACTATA-T
*
74212100 CCGGGCTAAGTCCCGAAGGCATTCT--GCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-TGAGCTAG-TACTATAT
* * * *
74212139 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TACTATAT
* * *
74212179 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TACTATAT
* * * *
74212218 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TACTATAT
*
74212258 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGT-ACTATAT
**
74212298 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74212316 TACTTGGTTT
Statistics
Matches: 192, Mismatches: 16, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.01
39 81 0.42
40 107 0.56
41 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTACTATAT
Found at i:74220226 original size:40 final size:39
Alignment explanation
Indices: 74220171--74220394 Score: 217
Period size: 40 Copynumber: 5.6 Consensus size: 39
74220161 CGGATGATAA
* *
74220171 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATT
* *
74220211 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAAT-T
*
74220251 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--AT-T
** * *
74220291 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATT
* *
74220330 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT--TACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--AT-T
74220370 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74220395 AGCTAGTGGC
Statistics
Matches: 159, Mismatches: 14, Indels: 22
0.82 0.07 0.11
Matches are distributed among these distances:
37 3 0.02
39 35 0.22
40 117 0.74
41 3 0.02
42 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATT
Found at i:74220374 original size:79 final size:80
Alignment explanation
Indices: 74220211--74220394 Score: 280
Period size: 79 Copynumber: 2.3 Consensus size: 80
74220201 GTGGCTAATT
* *
74220211 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* ** *
74220276 TGCGAGCTATTATAT
66 TGCAAGCTACCATAA
* *
74220291 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
74220355 TGCAAGTTACCATAA
66 TGCAAGCTACCATAA
74220370 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74220395 AGCTAGTGGC
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 59 0.62
80 36 0.38
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACCATAA
Found at i:74220409 original size:119 final size:120
Alignment explanation
Indices: 74220171--74220427 Score: 306
Period size: 119 Copynumber: 2.2 Consensus size: 120
74220161 CGGATGATAA
* * *
74220171 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAG-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTC
* * * * * *
74220235 GTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
65 GTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGCTACTATAT
* * * *
74220291 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
* * *
74220355 TGCAAGTTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TGGCTATAT
66 TGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGCT-ACTATAT
**
74220410 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74220428 TACTTGGTTT
Statistics
Matches: 117, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
118 15 0.13
119 73 0.62
120 27 0.23
121 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
TGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGCTACTATAT
Found at i:74220416 original size:79 final size:79
Alignment explanation
Indices: 74220211--74220427 Score: 276
Period size: 79 Copynumber: 2.7 Consensus size: 79
74220201 GTGGCTAATT
* *
74220211 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* ** *
74220276 TGCGAGCTATTATAT
65 TGCAAGCTACCATAA
*
74220291 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
74220355 TGCAAGTTACCATAA
65 TGCAAGCTACCATAA
* * * **
74220370 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAAGTCCCGAAGG
74220428 TACTTGGTTT
Statistics
Matches: 120, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 81 0.68
80 38 0.32
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACCATAA
Found at i:74225127 original size:29 final size:28
Alignment explanation
Indices: 74225032--74225139 Score: 112
Period size: 28 Copynumber: 3.8 Consensus size: 28
74225022 ACCCCTACAT
* *
74225032 ACATGCATATGGCCGACTAGGCCCAA-TC
1 ACATTCATATGGCCCACTAGG-CCAATTC
* *
74225060 TCATTCATATGGCCCATCT-GGCCAGTTC
1 ACATTCATATGGCCCA-CTAGGCCAATTC
* *
74225088 ATATTCTTATGGCCCACTAGGCCAAATTC
1 ACATTCATATGGCCCACTAGGCC-AATTC
*
74225117 ACATTCATATGGCCCATTAGGCC
1 ACATTCATATGGCCCACTAGGCC
74225140 CAAAAAATAT
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
27 5 0.08
28 34 0.52
29 26 0.40
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (28 bp):
ACATTCATATGGCCCACTAGGCCAATTC
Found at i:74225379 original size:8 final size:8
Alignment explanation
Indices: 74225366--74225410 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
74225356 GTAGCCCAAC
74225366 TTTCAGCT
1 TTTCAGCT
*
74225374 TTTCAGCA
1 TTTCAGCT
*
74225382 TTTCGGCT
1 TTTCAGCT
74225390 TTTCAGCTT
1 TTTCAGC-T
*
74225399 TTTCAGCA
1 TTTCAGCT
74225407 TTTC
1 TTTC
74225411 GGCATTTTGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
8 23 0.74
9 8 0.26
ACGTcount: A:0.13, C:0.24, G:0.13, T:0.49
Consensus pattern (8 bp):
TTTCAGCT
Found at i:74225415 original size:8 final size:8
Alignment explanation
Indices: 74225366--74225417 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
74225356 GTAGCCCAAC
*
74225366 TTTCAGCT
1 TTTCAGCA
74225374 TTTCAGCA
1 TTTCAGCA
* *
74225382 TTTCGGCT
1 TTTCAGCA
*
74225390 TTTCAGCTT
1 TTTCAGC-A
74225399 TTTCAGCA
1 TTTCAGCA
*
74225407 TTTCGGCA
1 TTTCAGCA
74225415 TTT
1 TTT
74225418 TGGCTTTTGC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
8 29 0.78
9 8 0.22
ACGTcount: A:0.13, C:0.23, G:0.15, T:0.48
Consensus pattern (8 bp):
TTTCAGCA
Found at i:74225425 original size:25 final size:25
Alignment explanation
Indices: 74225366--74225418 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 25
74225356 GTAGCCCAAC
74225366 TTTCAGC-TTTTCAGCATTTCGGCT
1 TTTCAGCTTTTTCAGCATTTCGGCT
74225390 TTTCAGCTTTTTCAGCATTTCGGCAT
1 TTTCAGCTTTTTCAGCATTTCGGC-T
74225416 TTT
1 TTT
74225419 GGCTTTTGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 7 0.26
25 16 0.59
26 4 0.15
ACGTcount: A:0.13, C:0.23, G:0.15, T:0.49
Consensus pattern (25 bp):
TTTCAGCTTTTTCAGCATTTCGGCT
Found at i:74226671 original size:16 final size:16
Alignment explanation
Indices: 74226650--74226681 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
74226640 AAGTTCGAGA
74226650 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
74226666 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
74226682 GTGTTACATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.31, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:74233025 original size:27 final size:26
Alignment explanation
Indices: 74232992--74233241 Score: 207
Period size: 27 Copynumber: 9.3 Consensus size: 26
74232982 AGGGAAAATT
*
74232992 AGTCATTTTACCT-TACTGGGGTATTAC
1 AGTCATTTTACCTATA--GGGGTATTTC
* * *
74233019 AGTCATTTTACCCTACAGAGGCATTAT-
1 AGTCATTTTA-CCTATAGGGGTATT-TC
* * *
74233046 AGTCATTTTACCATACATGGGTATTAC
1 AGTCATTTTACC-TATAGGGGTATTTC
* *
74233073 AGTTATTTTACCCTATAGGGGTATTTT
1 AGTCATTTTA-CCTATAGGGGTATTTC
* * *
74233100 GGTCATTTTACCCTACAAGGGTATTTC
1 AGTCATTTTA-CCTATAGGGGTATTTC
*
74233127 AATCATTTTATCCTATAGGGGTATTTC
1 AGTCATTTTA-CCTATAGGGGTATTTC
* *
74233154 GGTCATTTTAGCCTATGGGGGTATTTC
1 AGTCATTTTA-CCTATAGGGGTATTTC
*
74233181 GGTCATTTTATCCTATAGGGGTATTTC
1 AGTCATTTTA-CCTATAGGGGTATTTC
** *
74233208 AGTCATTTTATGTTCTAGGGGTATTTC
1 AGTCATTTTA-CCTATAGGGGTATTTC
*
74233235 GGTCATT
1 AGTCATT
74233242 CATGGCCCAA
Statistics
Matches: 183, Mismatches: 34, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
26 2 0.01
27 175 0.96
28 5 0.03
29 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (26 bp):
AGTCATTTTACCTATAGGGGTATTTC
Found at i:74233142 original size:54 final size:54
Alignment explanation
Indices: 74232992--74233217 Score: 247
Period size: 54 Copynumber: 4.2 Consensus size: 54
74232982 AGGGAAAATT
* * * * *
74232992 AGTCATTTTACCTTACTGGGGTATTACAGTCATTTTACCCTACAGAGGCATTAT-
1 AGTCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTATAGGGGTATT-TC
* * * *
74233046 AGTCATTTTACCATACATGGGTATTACAGTTATTTTACCCTATAGGGGTATTTT
1 AGTCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTATAGGGGTATTTC
* * * * *
74233100 GGTCATTTTACCCTACAAGGGTATTTCAATCATTTTATCCTATAGGGGTATTTC
1 AGTCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTATAGGGGTATTTC
* * ** * * *
74233154 GGTCATTTTAGCCTATGGGGGTATTTCGGTCATTTTATCCTATAGGGGTATTTC
1 AGTCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTATAGGGGTATTTC
74233208 AGTCATTTTA
1 AGTCATTTTA
74233218 TGTTCTAGGG
Statistics
Matches: 149, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
53 1 0.01
54 148 0.99
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (54 bp):
AGTCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTATAGGGGTATTTC
Found at i:74233227 original size:81 final size:81
Alignment explanation
Indices: 74232993--74233241 Score: 254
Period size: 81 Copynumber: 3.1 Consensus size: 81
74232983 GGGAAAATTA
* * * * *
74232993 GTCATTTTACCTTACT-GGGGTATTACAGTCATTTTACCCTAC-AGAGGCATTAT-AGTCATTTT
1 GTCATTTTACCCTA-TAGGGGTATTTCGGTCATTTTACCCTACAAG-GGTATT-TCAATCATTTT
* * * *
74233055 A-CCATACATGGGTATTACA
63 ATCC-TATAGGGGTATTTCG
* *
74233074 GTTATTTTACCCTATAGGGGTATTTTGGTCATTTTACCCTACAAGGGTATTTCAATCATTTTATC
1 GTCATTTTACCCTATAGGGGTATTTCGGTCATTTTACCCTACAAGGGTATTTCAATCATTTTATC
74233139 CTATAGGGGTATTTCG
66 CTATAGGGGTATTTCG
* * * * * * *
74233155 GTCATTTTAGCCTATGGGGGTATTTCGGTCATTTTATCCTATAGGGGTATTTCAGTCATTTTATG
1 GTCATTTTACCCTATAGGGGTATTTCGGTCATTTTACCCTACAAGGGTATTTCAATCATTTTATC
* *
74233220 TTCTAGGGGTATTTCG
66 CTATAGGGGTATTTCG
74233236 GTCATT
1 GTCATT
74233242 CATGGCCCAA
Statistics
Matches: 142, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
80 2 0.01
81 136 0.96
82 4 0.03
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (81 bp):
GTCATTTTACCCTATAGGGGTATTTCGGTCATTTTACCCTACAAGGGTATTTCAATCATTTTATC
CTATAGGGGTATTTCG
Found at i:74235998 original size:59 final size:58
Alignment explanation
Indices: 74235902--74236033 Score: 237
Period size: 59 Copynumber: 2.3 Consensus size: 58
74235892 AAAATTGTAC
*
74235902 AGCACTAAGTGTGCAAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
74235960 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
74236019 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74236034 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 22 0.31
59 49 0.69
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:74236022 original size:88 final size:89
Alignment explanation
Indices: 74235872--74236033 Score: 254
Period size: 88 Copynumber: 1.8 Consensus size: 89
74235862 GACAAGATTG
* * *
74235872 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCAAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCAAACTGAAAATATATAGCACT
74235937 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * * *
74235961 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCAAACTGAAAATATATAGCACT
74236025 AAGTGTGCG
66 AAGTGTGCG
74236034 GATTCACTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
88 51 0.77
89 15 0.23
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCAAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:74236045 original size:29 final size:29
Alignment explanation
Indices: 74235902--74236033 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
74235892 AAAATTGTAC
* *
74235902 AGCACTAAGTGTGCAAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
74235931 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
74235960 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
74235990 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
74236019 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74236034 GATTCACTAT
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
29 71 0.71
30 29 0.29
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Done.