Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 248 of 770
Found at i:74240201 original size:33 final size:35
Alignment explanation
Indices: 74240164--74240242 Score: 85
Period size: 33 Copynumber: 2.3 Consensus size: 35
74240154 CTAAGCCCAC
* *
74240164 TCAGATAACAGTGATACTGGG-C-TAGAGCCCTT-T
1 TCAGATAACAGTGAAACTGGGCCTTAG-CCCCTTAT
* *
74240197 TCAGATTACA-TTAAACTGGGCCTTAGCCCCTTAT
1 TCAGATAACAGTGAAACTGGGCCTTAGCCCCTTAT
74240231 TCAGATAACAGT
1 TCAGATAACAGT
74240243 ACCGCCCATA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
32 8 0.22
33 15 0.41
34 13 0.35
35 1 0.03
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (35 bp):
TCAGATAACAGTGAAACTGGGCCTTAGCCCCTTAT
Found at i:74241897 original size:24 final size:24
Alignment explanation
Indices: 74241859--74241930 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
74241849 AACTCCTGCT
*
74241859 CCTTGATCAGTTCCTAAATCTTCTA
1 CCTT-ATCAGCTCCTAAATCTTCTA
* * *
74241884 CTTTATCAGCTCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCTTCTA
*
74241908 CCTTATCAACTCCTAAATCTTCT
1 CCTTATCAGCTCCTAAATCTTCT
74241931 CCTGACAGCC
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
24 37 0.93
25 3 0.08
ACGTcount: A:0.24, C:0.33, G:0.04, T:0.39
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCTTCTA
Found at i:74252995 original size:40 final size:40
Alignment explanation
Indices: 74252950--74253116 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
74252940 CGGAATATAA
*
74252950 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
74252990 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
74253030 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
74253070 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
74253109 CCGGATAT
1 CCGGATAT
74253117 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74253100 original size:80 final size:79
Alignment explanation
Indices: 74252966--74253116 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
74252956 ATAACCATGT
*
74252966 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
74253031 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
74253046 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
74253109 CCGGATAT
64 CCGGATAT
74253117 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:74255788 original size:80 final size:80
Alignment explanation
Indices: 74255642--74255846 Score: 234
Period size: 80 Copynumber: 2.6 Consensus size: 80
74255632 GAATACAACT
* * *
74255642 GGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCC
1 GGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATGCC
*
74255707 TTCGGGTATTAGCCC
66 TTCGGGTATTAACCC
* * **
74255722 GGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCAC-AATGG
1 GGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAAAT-G
*
74255785 CCTTCGGGTCTTAACCC
64 CCTTCGGGTATTAACCC
** * ** * *
74255802 GGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 GGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
74255847 TCATTCAATT
Statistics
Matches: 105, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 100 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (80 bp):
GGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATGCC
TTCGGGTATTAACCC
Found at i:74255847 original size:40 final size:40
Alignment explanation
Indices: 74255642--74255847 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
74255632 GAATACAACT
* *
74255642 GGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGCCC
1 GGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGCCC
* * * *
74255682 GGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCCC
1 GGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCC
* * *
74255722 GGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCC
1 GGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCC
* ** *
74255762 GGATGTGGTC-ACTAGCAC-AATGGCCTTCGGGTCTTAACCC
1 GGATAT-AACAACTAGCACAAAT-GCCTTCGGGTCTTAGCCC
** * * *
74255802 GGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCC
1 GGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCC
74255842 GGATAT
1 GGATAT
74255848 CATTCAATTT
Statistics
Matches: 138, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 3 0.02
40 131 0.95
41 4 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
GGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCC
Found at i:74257311 original size:29 final size:29
Alignment explanation
Indices: 74257279--74257410 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
74257269 ATAGTGAATC
74257279 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
74257308 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
74257338 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
74257367 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
74257396 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74257411 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:74257420 original size:59 final size:59
Alignment explanation
Indices: 74257279--74257410 Score: 239
Period size: 59 Copynumber: 2.3 Consensus size: 59
74257269 ATAGTGAATC
74257279 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
* *
74257338 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
74257396 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74257411 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 24 0.34
59 47 0.66
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:74265156 original size:29 final size:29
Alignment explanation
Indices: 74265124--74265255 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
74265114 ATAGTGAATC
74265124 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
74265153 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
74265183 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
74265212 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
74265241 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74265256 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:74265265 original size:59 final size:59
Alignment explanation
Indices: 74265124--74265255 Score: 239
Period size: 59 Copynumber: 2.3 Consensus size: 59
74265114 ATAGTGAATC
74265124 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
* *
74265183 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
74265241 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74265256 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 24 0.34
59 47 0.66
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:74270306 original size:47 final size:47
Alignment explanation
Indices: 74270232--74270345 Score: 210
Period size: 47 Copynumber: 2.4 Consensus size: 47
74270222 ATGGTTGAGT
* *
74270232 TCCGAACTCGTTGAGTTGAGTTTGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCGTGAGATGTAACTAGGCA
74270279 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCGTGAGATGTAACTAGGCA
74270326 TCCGAGCTCGTTGAGTTGAG
1 TCCGAGCTCGTTGAGTTGAG
74270346 CTTATAGATG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.31
Consensus pattern (47 bp):
TCCGAGCTCGTTGAGTTGAGTTCGAGTTCGTGAGATGTAACTAGGCA
Found at i:74273378 original size:24 final size:25
Alignment explanation
Indices: 74273342--74273388 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
74273332 ATGCAAGAAA
*
74273342 TGCCCTTTAATG-ATTGGATGTTGT
1 TGCCATTTAATGAATTGGATGTTGT
* *
74273366 TGCCATTTGATGAATTTGATGTT
1 TGCCATTTAATGAATTGGATGTT
74273389 ATTTTGGGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.19, C:0.11, G:0.23, T:0.47
Consensus pattern (25 bp):
TGCCATTTAATGAATTGGATGTTGT
Found at i:74284820 original size:24 final size:24
Alignment explanation
Indices: 74284788--74284874 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
74284778 AATCTCAAAT
74284788 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
74284812 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
74284836 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
74284860 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
74284875 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:74284840 original size:48 final size:48
Alignment explanation
Indices: 74284788--74284896 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
74284778 AATCTCAAAT
** *
74284788 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
74284836 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
74284884 GCACTATGTGTGC
1 GCACTATGTGTGC
74284897 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:74284887 original size:24 final size:24
Alignment explanation
Indices: 74284788--74284896 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
74284778 AATCTCAAAT
*
74284788 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
74284812 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
74284836 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
74284860 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
74284884 GCACTATGTGTGC
1 GCACTATGTGTGC
74284897 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:74292700 original size:24 final size:24
Alignment explanation
Indices: 74292668--74292754 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
74292658 AATCTCAAAT
74292668 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
74292692 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
74292716 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
74292740 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
74292755 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:74292720 original size:48 final size:48
Alignment explanation
Indices: 74292668--74292776 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
74292658 AATCTCAAAT
** *
74292668 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
74292716 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
74292764 GCACTATGTGTGC
1 GCACTATGTGTGC
74292777 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:74292767 original size:24 final size:24
Alignment explanation
Indices: 74292668--74292776 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
74292658 AATCTCAAAT
*
74292668 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
74292692 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
74292716 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
74292740 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
74292764 GCACTATGTGTGC
1 GCACTATGTGTGC
74292777 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:74295386 original size:47 final size:47
Alignment explanation
Indices: 74295315--74295469 Score: 213
Period size: 47 Copynumber: 3.3 Consensus size: 47
74295305 CCCTTCGGGA
* * * * *
74295315 CTTATCACAT-TTTACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
74295361 CCTATCACCTATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
74295408 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
74295455 CTTATCACATATATA
1 CTTATCACATATATA
74295470 TATCTCATAC
Statistics
Matches: 96, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
46 8 0.08
47 88 0.92
ACGTcount: A:0.27, C:0.33, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:74299761 original size:48 final size:48
Alignment explanation
Indices: 74299690--74299795 Score: 194
Period size: 48 Copynumber: 2.2 Consensus size: 48
74299680 TCATATGTAA
74299690 ATATTGTAATATAACTGTTATTTTAAATCATTTAATGCTATTTATACG
1 ATATTGTAATATAACTGTTATTTTAAATCATTTAATGCTATTTATACG
*
74299738 ATATTGTAATATAACTGTTATTTTAAATCATTTAATGTTATTTATACG
1 ATATTGTAATATAACTGTTATTTTAAATCATTTAATGCTATTTATACG
*
74299786 ATATTATAAT
1 ATATTGTAAT
74299796 TGTTATCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 56 1.00
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.49
Consensus pattern (48 bp):
ATATTGTAATATAACTGTTATTTTAAATCATTTAATGCTATTTATACG
Found at i:74300032 original size:46 final size:46
Alignment explanation
Indices: 74299980--74300152 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
74299970 TTGGGCATCC
74299980 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * *
74300026 GAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
* * * *
74300073 GAACTCGTTGAGTTGAGTCCAAATTCACTTATGGATGCGAATGCCT
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* *
74300119 GAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74300153 GCGAGTTACA
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 56 0.55
47 25 0.25
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (46 bp):
GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:74300083 original size:93 final size:93
Alignment explanation
Indices: 74299973--74300145 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
74299963 AGGATATTTG
* * * *
74299973 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAATTCACTTATGGATGCGAATGCCTGAGCTCGTTGAG
74300038 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
74300066 GGCATCCGAACTCGTTGAGTTGAGTCCAAATTCACTTATGGATGCGAATGCCTGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAATTCACTTATGGATGCGAATGCCTGAGCTCGTTGAG
*
74300131 TTGAGTTCGAGTTCG
66 TTGAGTCCGAGTTCG
74300146 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAATTCACTTATGGATGCGAATGCCTGAGCTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74302696 original size:145 final size:145
Alignment explanation
Indices: 74302433--74302721 Score: 517
Period size: 145 Copynumber: 2.0 Consensus size: 145
74302423 TTGATTGGTG
74302433 AACAACTCTGTTCCTACACTTATATAAGGCAATCACAGGCACATCTATTGTAAACTCCCAAACCC
1 AACAACTCTGTTCCTACACTTATATAAGGCAATCACAGGCACATCTATTGTAAACTCCCAAACCC
74302498 GACCTAGATGTTACGACCAAATCGTGAAGGCCACATTGGACAACTTAGTGTCGAACCTACTCTAA
66 GACCTAGATGTTACGACCAAATCGTGAAGGCCACATTGGACAACTTAGTGTCGAACCTACTCTAA
74302563 CGACAGTTTAAAACA
131 CGACAGTTTAAAACA
* * *
74302578 AACAACTCTGTTCTTACACTTATATAAGGCAATCACAGGCACATCTGTTGTAACCTCCCAAACCC
1 AACAACTCTGTTCCTACACTTATATAAGGCAATCACAGGCACATCTATTGTAAACTCCCAAACCC
*
74302643 -AGCCTAGATGTTACGACCAAATCGTGAAGGCCACATTGGACAACTTAGTGTCGAACTTACTCTA
66 GA-CCTAGATGTTACGACCAAATCGTGAAGGCCACATTGGACAACTTAGTGTCGAACCTACTCTA
*
74302707 ACGACAGTTTGAAAC
130 ACGACAGTTTAAAAC
74302722 CTTTATGTAC
Statistics
Matches: 138, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
144 1 0.01
145 137 0.99
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (145 bp):
AACAACTCTGTTCCTACACTTATATAAGGCAATCACAGGCACATCTATTGTAAACTCCCAAACCC
GACCTAGATGTTACGACCAAATCGTGAAGGCCACATTGGACAACTTAGTGTCGAACCTACTCTAA
CGACAGTTTAAAACA
Found at i:74307609 original size:18 final size:17
Alignment explanation
Indices: 74307585--74307633 Score: 71
Period size: 18 Copynumber: 2.8 Consensus size: 17
74307575 ATAAGAATCC
74307585 AAATACCAAATCATCAT
1 AAATACCAAATCATCAT
*
74307602 ACAATACCAAAACATCAT
1 A-AATACCAAATCATCAT
74307620 AAGATACCAAATCA
1 AA-ATACCAAATCA
74307634 CCAAGACATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 2 0.07
18 26 0.93
ACGTcount: A:0.55, C:0.24, G:0.02, T:0.18
Consensus pattern (17 bp):
AAATACCAAATCATCAT
Found at i:74322117 original size:48 final size:47
Alignment explanation
Indices: 74322062--74322190 Score: 168
Period size: 48 Copynumber: 2.7 Consensus size: 47
74322052 ATGTAACACA
* * * *
74322062 ATGTCTGGGACATGGCTTTGGTATCGTTATGAGATCCCATATAAGACC
1 ATGTCTGGGATATGGCATTGGCATCGATATGAGATCCCATATAA-ACC
* * *
74322110 ATGTCTGGGATATGGCATTGGCATCGACATGTGATCCCATGTAAACC
1 ATGTCTGGGATATGGCATTGGCATCGATATGAGATCCCATATAAACC
**
74322157 ACATCTGGGATATGGCATTGGCATCGATATGAGA
1 ATGTCTGGGATATGGCATTGGCATCGATATGAGA
74322191 CATCGTGTAA
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
47 33 0.47
48 37 0.53
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (47 bp):
ATGTCTGGGATATGGCATTGGCATCGATATGAGATCCCATATAAACC
Found at i:74325204 original size:19 final size:20
Alignment explanation
Indices: 74325168--74325205 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
74325158 CACGAATAGC
74325168 AGGGAAAGAAAGAAGAAAAA
1 AGGGAAAGAAAGAAGAAAAA
74325188 AGGGAAAGAAA-AAGAAAA
1 AGGGAAAGAAAGAAGAAAA
74325206 GGAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (20 bp):
AGGGAAAGAAAGAAGAAAAA
Found at i:74332060 original size:29 final size:29
Alignment explanation
Indices: 74332026--74332101 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
74332016 TACTCGATTT
* * *
74332026 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
74332055 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
74332084 CGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
74332102 TATTTCCAGC
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.25, C:0.36, G:0.18, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:74332117 original size:29 final size:29
Alignment explanation
Indices: 74332085--74332215 Score: 217
Period size: 29 Copynumber: 4.5 Consensus size: 29
74332075 CTTCGAGCTC
74332085 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* * *
74332114 GCACACTCAATGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
74332143 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
74332172 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
74332201 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
74332216 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 93 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:74332118 original size:58 final size:58
Alignment explanation
Indices: 74332085--74332215 Score: 253
Period size: 58 Copynumber: 2.3 Consensus size: 58
74332075 CTTCGAGCTC
*
74332085 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAATGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCAT
74332143 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCAT
74332201 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
74332216 ATCTCGTCAC
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
58 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (58 bp):
GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCAT
Found at i:74346392 original size:16 final size:16
Alignment explanation
Indices: 74346371--74346406 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
74346361 AGCAGGGAAA
74346371 GAAAGAAGAAA-AAAAG
1 GAAAGAA-AAAGAAAAG
74346387 GAAAGAAAAAGAAAAG
1 GAAAGAAAAAGAAAAG
74346403 GAAA
1 GAAA
74346407 ATTTAGGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (16 bp):
GAAAGAAAAAGAAAAG
Found at i:74348337 original size:251 final size:251
Alignment explanation
Indices: 74347656--74348410 Score: 1464
Period size: 251 Copynumber: 3.0 Consensus size: 251
74347646 GCGTAGGACT
74347656 AGGTATGAAAGAAAGCTAAAGACTCAGCATCCAAGCCAATCCCGGACTTAAAGTGGTGAACACTT
1 AGGTATGAAAGAAAGCTAAAGACTCAGCATCCAAGCCAATCCCGGACTTAAAGTGGTGAACACTT
74347721 TTCTTTTGGTAAAATGTCATGTACCTAGGTTGTTAAGGTGTTATTTTGTACATAATAGTGAATAA
66 TTCTTTTGGTAAAATGTCATGTACCTAGGTTGTTAAGGTGTTATTTTGTACATAATAGTGAATAA
74347786 TCATGAAAGTTGTTGAAGCATGGTATGAAATATGCATTTTTGGAAGTTAAAATTATATGAGTTTG
131 TCATGAAAGTTGTTGAAGCATGGTATGAAATATGCATTTTTGGAAGTTAAAATTATATGAGTTTG
74347851 ACTAGTATGATAATGTAGTATAATTTTGATATGAATTGTGGTACATAATCCTTAAG
196 ACTAGTATGATAATGTAGTATAATTTTGATATGAATTGTGGTACATAATCCTTAAG
74347907 AGGTATGAAAG-AA---AAAGACTCAGCATCCAAGCCAATCCCGGACTTAAAGTGGTGAACACTT
1 AGGTATGAAAGAAAGCTAAAGACTCAGCATCCAAGCCAATCCCGGACTTAAAGTGGTGAACACTT
74347968 TTCTTTTGGTAAAATGTCATGTACCTAGGTTGTTAAGGTGTTATTTTGTACATAATAGTGAATAA
66 TTCTTTTGGTAAAATGTCATGTACCTAGGTTGTTAAGGTGTTATTTTGTACATAATAGTGAATAA
*
74348033 TCATGAAAGTTGTTGAAGCATGGTATGAAATATGCATTTTTGGAAGTTAAAATTATATAAGTTTG
131 TCATGAAAGTTGTTGAAGCATGGTATGAAATATGCATTTTTGGAAGTTAAAATTATATGAGTTTG
74348098 ACTAGTATGATAATGTAGTATAATTTTGATATGAATTGTGGTACATAATCCTTAAG
196 ACTAGTATGATAATGTAGTATAATTTTGATATGAATTGTGGTACATAATCCTTAAG
*
74348154 AGGTATGAAAGAAAGCTAAAGACTCAACATCCAAGCCAATCCCGGACTTAAAGTGGTGAACACTT
1 AGGTATGAAAGAAAGCTAAAGACTCAGCATCCAAGCCAATCCCGGACTTAAAGTGGTGAACACTT
74348219 TTCTTTTGGTAAAATGTCATGTACCTAGGTTGTTAAGGTGTTATTTTGTACATAATAGTGAATAA
66 TTCTTTTGGTAAAATGTCATGTACCTAGGTTGTTAAGGTGTTATTTTGTACATAATAGTGAATAA
74348284 TCATGAAAGTTGTTGAAGCATGGTATGAAATATGCATTTTTGGAAGTTAAAATTATATGAGTTTG
131 TCATGAAAGTTGTTGAAGCATGGTATGAAATATGCATTTTTGGAAGTTAAAATTATATGAGTTTG
74348349 ACTAGTATGATAATGTAGTATAATTTTGATATGAATTGTGGTACATAATCCTTAAG
196 ACTAGTATGATAATGTAGTATAATTTTGATATGAATTGTGGTACATAATCCTTAAG
74348405 AGGTAT
1 AGGTAT
74348411 TGAAGTGAAT
Statistics
Matches: 497, Mismatches: 3, Indels: 8
0.98 0.01 0.02
Matches are distributed among these distances:
247 244 0.49
248 2 0.00
250 2 0.00
251 249 0.50
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.35
Consensus pattern (251 bp):
AGGTATGAAAGAAAGCTAAAGACTCAGCATCCAAGCCAATCCCGGACTTAAAGTGGTGAACACTT
TTCTTTTGGTAAAATGTCATGTACCTAGGTTGTTAAGGTGTTATTTTGTACATAATAGTGAATAA
TCATGAAAGTTGTTGAAGCATGGTATGAAATATGCATTTTTGGAAGTTAAAATTATATGAGTTTG
ACTAGTATGATAATGTAGTATAATTTTGATATGAATTGTGGTACATAATCCTTAAG
Found at i:74348687 original size:42 final size:42
Alignment explanation
Indices: 74348628--74348709 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
74348618 ATTCCCATGA
74348628 CCGTGTGTGCAAGTTAGATCTGCCCACGGCCTAGCCCCACGG
1 CCGTGTGTGCAAGTTAGATCTGCCCACGGCCTAGCCCCACGG
*
74348670 CCGTGTGTGCAAGTTAGATCTGCCCACGGCCTGGCCCCAC
1 CCGTGTGTGCAAGTTAGATCTGCCCACGGCCTAGCCCCAC
74348710 AGCCATGGGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.16, C:0.37, G:0.28, T:0.20
Consensus pattern (42 bp):
CCGTGTGTGCAAGTTAGATCTGCCCACGGCCTAGCCCCACGG
Found at i:74349776 original size:25 final size:25
Alignment explanation
Indices: 74349742--74349837 Score: 100
Period size: 25 Copynumber: 4.1 Consensus size: 25
74349732 CACTTCTCAA
74349742 CTATATTAACAAATACCATATAAAC
1 CTATATTAACAAATACCATATAAAC
*
74349767 CTATATTAACAAATACCATAT-TA-
1 CTATATTAACAAATACCATATAAAC
* *
74349790 C-A-ATT-TC-AATA-C-TCATCAAC
1 CTATATTAACAAATACCAT-ATAAAC
74349810 CTATATTAACAAATACCATATAAAC
1 CTATATTAACAAATACCATATAAAC
74349835 CTA
1 CTA
74349838 CCTGGTTAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 18
0.71 0.06 0.22
Matches are distributed among these distances:
17 1 0.02
18 3 0.05
19 5 0.09
20 2 0.04
21 4 0.07
22 4 0.07
23 2 0.04
24 5 0.09
25 30 0.53
26 1 0.02
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (25 bp):
CTATATTAACAAATACCATATAAAC
Found at i:74350894 original size:14 final size:15
Alignment explanation
Indices: 74350877--74350909 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
74350867 AATTTTTTTC
*
74350877 AATAAATTTAAAAA-
1 AATAAATATAAAAAT
74350891 AATAAATATAAAAAT
1 AATAAATATAAAAAT
74350906 AATA
1 AATA
74350910 TTTTTATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AATAAATATAAAAAT
Found at i:74351947 original size:22 final size:20
Alignment explanation
Indices: 74351892--74351943 Score: 77
Period size: 22 Copynumber: 2.5 Consensus size: 20
74351882 ACTTTTTATA
*
74351892 TTTTTAGTCATTATAGCATG
1 TTTTTAGTCATTACAGCATG
74351912 TTTTTAGGTTCATTACAGCATG
1 TTTTTA-G-TCATTACAGCATG
74351934 TTTTTAGTCA
1 TTTTTAGTCA
74351944 CATTGCTTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 9 0.31
21 2 0.07
22 18 0.62
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.50
Consensus pattern (20 bp):
TTTTTAGTCATTACAGCATG
Found at i:74354400 original size:13 final size:14
Alignment explanation
Indices: 74354382--74354412 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
74354372 TCCTTACATT
74354382 TCATATTTTGTAA-
1 TCATATTTTGTAAC
74354395 TCATATTTTGTAAC
1 TCATATTTTGTAAC
74354409 TCAT
1 TCAT
74354413 TCCCATTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52
Consensus pattern (14 bp):
TCATATTTTGTAAC
Found at i:74354793 original size:40 final size:40
Alignment explanation
Indices: 74354739--74354836 Score: 139
Period size: 40 Copynumber: 2.5 Consensus size: 40
74354729 AGCGGCATTT
**
74354739 TTTTTAA-AAA-CGCCGCTAAAGATCGAGCATTAG-AGGTG
1 TTTTTAAGAAAGCGCCGCTAAAGATCGAGCATTAGCA-GCA
74354777 TTTTTAAGAAAGCGCCGCTAAAGATCGAGCATTAGCAGCA
1 TTTTTAAGAAAGCGCCGCTAAAGATCGAGCATTAGCAGCA
*
74354817 TTTTTAAGAAAGCACCGCTA
1 TTTTTAAGAAAGCGCCGCTA
74354837 TAGGTCGACC
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
38 7 0.13
39 3 0.06
40 43 0.80
41 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (40 bp):
TTTTTAAGAAAGCGCCGCTAAAGATCGAGCATTAGCAGCA
Found at i:74354861 original size:40 final size:40
Alignment explanation
Indices: 74354739--74354878 Score: 135
Period size: 40 Copynumber: 3.5 Consensus size: 40
74354729 AGCGGCATTT
* * *
74354739 TTTTTAA-AAA-CGCCGCTAAAGATCGAGCATTAG-AGGTG
1 TTTTTAAGAAAGCACCGCTAAAGATCGACCATTAGCA-GCG
* * *
74354777 TTTTTAAGAAAGCGCCGCTAAAGATCGAGCATTAGCAGCA
1 TTTTTAAGAAAGCACCGCTAAAGATCGACCATTAGCAGCG
* * *
74354817 TTTTTAAGAAAGCACCGCTATAGGTCGACC-TATAGCGGCG
1 TTTTTAAGAAAGCACCGCTAAAGATCGACCAT-TAGCAGCG
* *
74354857 TTTTTAAAAAAACACCGCTAAA
1 TTTTTAAGAAAGCACCGCTAAA
74354879 AGATTAAGCT
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
38 7 0.08
39 4 0.05
40 75 0.86
41 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (40 bp):
TTTTTAAGAAAGCACCGCTAAAGATCGACCATTAGCAGCG
Found at i:74355152 original size:7 final size:7
Alignment explanation
Indices: 74355140--74355178 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
74355130 TAAGGGTTGG
74355140 GGTTGAT
1 GGTTGAT
74355147 GGTTGAT
1 GGTTGAT
74355154 GGTTGAT
1 GGTTGAT
74355161 GGTTGAT
1 GGTTGAT
74355168 GGTTGAT
1 GGTTGAT
74355175 GGTT
1 GGTT
74355179 TATGTTTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.13, C:0.00, G:0.44, T:0.44
Consensus pattern (7 bp):
GGTTGAT
Found at i:74355804 original size:14 final size:15
Alignment explanation
Indices: 74355771--74355812 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
74355761 CTCAAAACAT
*
74355771 AAACCCCTAAAACTC
1 AAACCCCTAAACCTC
74355786 AAACCCCTAAACCT-
1 AAACCCCTAAACCTC
* *
74355800 TAACCCTTAAACC
1 AAACCCCTAAACC
74355813 CCAAGCCTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.43, C:0.40, G:0.00, T:0.17
Consensus pattern (15 bp):
AAACCCCTAAACCTC
Found at i:74356432 original size:8 final size:8
Alignment explanation
Indices: 74356389--74356486 Score: 74
Period size: 8 Copynumber: 11.9 Consensus size: 8
74356379 TTTATATGTT
74356389 AATTTAAA
1 AATTTAAA
74356397 AATTATAAA
1 AATT-TAAA
74356406 AATATTCCAAAA
1 AAT-TT---AAA
*
74356418 AAATTAAA
1 AATTTAAA
74356426 AATTTAAA
1 AATTTAAA
74356434 AA--TAAA
1 AATTTAAA
* *
74356440 AAATAAAA
1 AATTTAAA
*
74356448 AAATTAAA
1 AATTTAAA
74356456 AATTTAAA
1 AATTTAAA
**
74356464 AATAAAAA
1 AATTTAAA
*
74356472 AACTTAAA
1 AATTTAAA
74356480 AATTTAA
1 AATTTAA
74356487 TATTTAATAT
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
6 6 0.08
8 50 0.69
9 8 0.11
10 1 0.01
11 2 0.03
12 5 0.07
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (8 bp):
AATTTAAA
Found at i:74356450 original size:30 final size:30
Alignment explanation
Indices: 74356414--74356472 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
74356404 AAAATATTCC
74356414 AAAAAAATTAAAAATTTAAAAATAAAAAAT
1 AAAAAAATTAAAAATTTAAAAATAAAAAAT
74356444 AAAAAAATTAAAAATTTAAAAATAAAAAA
1 AAAAAAATTAAAAATTTAAAAATAAAAAA
74356473 ACTTAAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (30 bp):
AAAAAAATTAAAAATTTAAAAATAAAAAAT
Found at i:74356483 original size:24 final size:23
Alignment explanation
Indices: 74356416--74356486 Score: 99
Period size: 22 Copynumber: 3.1 Consensus size: 23
74356406 AATATTCCAA
* * *
74356416 AAAAATTAAAAATTTAAAAA-TA
1 AAAAATAAAAAAATTAAAAATTT
74356438 AAAAATAAAAAAATTAAAAATTT
1 AAAAATAAAAAAATTAAAAATTT
74356461 AAAAATAAAAAAACTTAAAAATTT
1 AAAAATAAAAAAA-TTAAAAATTT
74356485 AA
1 AA
74356487 TATTTAATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
22 18 0.41
23 14 0.32
24 12 0.27
ACGTcount: A:0.73, C:0.01, G:0.00, T:0.25
Consensus pattern (23 bp):
AAAAATAAAAAAATTAAAAATTT
Found at i:74358051 original size:22 final size:22
Alignment explanation
Indices: 74358026--74358070 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
74358016 TAGAACTGTG
74358026 ATTTTGAGTTGAGTTTATATTT
1 ATTTTGAGTTGAGTTTATATTT
*
74358048 ATTTTGAGTTGAGTTTATGTTT
1 ATTTTGAGTTGAGTTTATATTT
74358070 A
1 A
74358071 CTTCTTGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.20, T:0.58
Consensus pattern (22 bp):
ATTTTGAGTTGAGTTTATATTT
Found at i:74359247 original size:74 final size:74
Alignment explanation
Indices: 74359126--74359275 Score: 282
Period size: 74 Copynumber: 2.0 Consensus size: 74
74359116 TTCATACCAG
*
74359126 AATCTCTTCAATGGCTGGTGAGTACAATTTGAGTTTCTCTTAAATTTTACAGCTACAGTTTGGTG
1 AATCTCTTCAATGGCTGGTGAGTACAATTTGAGTTTCTCTTAAATTTTACAGCTACAATTTGGTG
74359191 CCTATCTTA
66 CCTATCTTA
*
74359200 AATCTCTTTAATGGCTGGTGAGTACAATTTGAGTTTCTCTTAAATTTTACAGCTACAATTTGGTG
1 AATCTCTTCAATGGCTGGTGAGTACAATTTGAGTTTCTCTTAAATTTTACAGCTACAATTTGGTG
74359265 CCTATCTTA
66 CCTATCTTA
74359274 AA
1 AA
74359276 GGCTCAAGTA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.41
Consensus pattern (74 bp):
AATCTCTTCAATGGCTGGTGAGTACAATTTGAGTTTCTCTTAAATTTTACAGCTACAATTTGGTG
CCTATCTTA
Found at i:74361033 original size:86 final size:86
Alignment explanation
Indices: 74360859--74361083 Score: 281
Period size: 86 Copynumber: 2.6 Consensus size: 86
74360849 AAGTTTATAT
* ** * * * * *
74360859 TCTTTAGTGGCGTTTGTGAAAAAAGTGCCGCTAAAGGTC-TGTTATATAGTGGCGTTTGTGGAAA
1 TCTTTAGTGGCGTTTGCGAAAAAAGCACCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGCGGAAA
*
74360923 AAGCACCGCTAAAGGTCATGG
66 AAGCACCACTAAAGGTCATGG
* * *
74360944 TCTTTAGTGGCGTTTGCGAGAAAAGCACCACTAAAGGTCATGGTCTTTAGCGGCGTTTGCGGGAA
1 TCTTTAGTGGCGTTTGCGAAAAAAGCACCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGCGGAAA
* *
74361009 AAGCGCCACTAAAGTTCATGG
66 AAGCACCACTAAAGGTCATGG
* * * *
74361030 TCTTTAGCGGCGTTTACGAAAAAAGCTCCGCTAAAAGTCATGGTCTTTAGCGGC
1 TCTTTAGTGGCGTTTGCGAAAAAAGCACCGCTAAAGGTCATGGTCTTTAGCGGC
74361084 TTTTTTTTAA
Statistics
Matches: 119, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
85 34 0.29
86 85 0.71
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (86 bp):
TCTTTAGTGGCGTTTGCGAAAAAAGCACCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGCGGAAA
AAGCACCACTAAAGGTCATGG
Found at i:74361074 original size:43 final size:43
Alignment explanation
Indices: 74360859--74361083 Score: 254
Period size: 43 Copynumber: 5.3 Consensus size: 43
74360849 AAGTTTATAT
* * ** *
74360859 TCTTTAGTGGCGTTTGTGAAAAAAGTGCCGCTAAAGGTC-TGT
1 TCTTTAGCGGCGTTTGCGAAAAAAGCACCGCTAAAGGTCATGG
* * * * *
74360901 TATATAGTGGCGTTTGTGGAAAAAGCACCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGCGAAAAAAGCACCGCTAAAGGTCATGG
* * *
74360944 TCTTTAGTGGCGTTTGCGAGAAAAGCACCACTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGCGAAAAAAGCACCGCTAAAGGTCATGG
** * * *
74360987 TCTTTAGCGGCGTTTGCGGGAAAAGCGCCACTAAAGTTCATGG
1 TCTTTAGCGGCGTTTGCGAAAAAAGCACCGCTAAAGGTCATGG
* * *
74361030 TCTTTAGCGGCGTTTACGAAAAAAGCTCCGCTAAAAGTCATGG
1 TCTTTAGCGGCGTTTGCGAAAAAAGCACCGCTAAAGGTCATGG
74361073 TCTTTAGCGGC
1 TCTTTAGCGGC
74361084 TTTTTTTTAA
Statistics
Matches: 159, Mismatches: 23, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
42 34 0.21
43 125 0.79
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTGCGAAAAAAGCACCGCTAAAGGTCATGG
Found at i:74362377 original size:2 final size:2
Alignment explanation
Indices: 74362370--74362395 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
74362360 TGCATATTTC
74362370 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
74362396 CACAAGTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74363950 original size:30 final size:29
Alignment explanation
Indices: 74363856--74363957 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
74363846 TATAGTGAAT
* * *
74363856 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
74363885 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
74363913 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
74363943 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
74363958 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:74365720 original size:44 final size:43
Alignment explanation
Indices: 74365641--74365767 Score: 148
Period size: 44 Copynumber: 2.9 Consensus size: 43
74365631 CTCCTACAAC
* * * * *
74365641 GCCAACATCCTAGACGTGGTCTTACATGTAATCACATATCGAT
1 GCCAACGTCCCAGACGTGGTCTTAAACGAAATCACATATCGAT
**
74365684 GCCATTGTCCCAGACAG-GGTCTTAAACGTAAATCACATATCGAT
1 GCCAACGTCCCAGAC-GTGGTCTTAAACG-AAATCACATATCGAT
* *
74365728 TCCAACGTCCCAGACGTGGTCTTACACGAAATCACATATC
1 GCCAACGTCCCAGACGTGGTCTTAAACGAAATCACATATC
74365768 AGAATCCTAT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
43 33 0.47
44 37 0.53
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
GCCAACGTCCCAGACGTGGTCTTAAACGAAATCACATATCGAT
Found at i:74373360 original size:21 final size:21
Alignment explanation
Indices: 74373334--74373373 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74373324 TGTTATTATC
*
74373334 ATTTTATGTGTTTTATTTAAT
1 ATTTTATGTCTTTTATTTAAT
*
74373355 ATTTTATTTCTTTTATTTA
1 ATTTTATGTCTTTTATTTA
74373374 TTTGCTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.70
Consensus pattern (21 bp):
ATTTTATGTCTTTTATTTAAT
Found at i:74379978 original size:43 final size:43
Alignment explanation
Indices: 74379905--74379990 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
74379895 TATGTGATTC
* *
74379905 CGATATGTGTTTACAAGTAAGACTCTGTCTGGGACAG-TGGCAT
1 CGATATGTGGTTACAAGTAAGACTCCGTCTGGGAC-GTTGGCAT
*
74379948 CGATATGTGGTTACATGTAAGAC-CACGTCTGGGACGTTGGCAT
1 CGATATGTGGTTACAAGTAAGACTC-CGTCTGGGACGTTGGCAT
74379991 GATTTATGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 2 0.05
43 36 0.95
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
CGATATGTGGTTACAAGTAAGACTCCGTCTGGGACGTTGGCAT
Found at i:74381429 original size:2 final size:2
Alignment explanation
Indices: 74381422--74381448 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
74381412 TTTACTGGTC
74381422 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
74381449 AGTTCGCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:74385264 original size:72 final size:72
Alignment explanation
Indices: 74385147--74385290 Score: 261
Period size: 72 Copynumber: 2.0 Consensus size: 72
74385137 TAACGCGAGT
*
74385147 ATGTATAAAAAGGCCTATTCAAAGTCGATCACTATAAGCCAGCCAAGGACGACAACTACTAGCCA
1 ATGTATAAAAAGGCCTATTCAAAGTCGATCACTATAAGCCAGCCAAGGACGACAACTACAAGCCA
74385212 TCAGATC
66 TCAGATC
* *
74385219 ATGTATAAAAAGGCCTATTCAAAGTTGATCACTATAAGCCAGCCAAGGAGGACAACTACAAGCCA
1 ATGTATAAAAAGGCCTATTCAAAGTCGATCACTATAAGCCAGCCAAGGACGACAACTACAAGCCA
74385284 TCAGATC
66 TCAGATC
74385291 CCTCCAAGCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (72 bp):
ATGTATAAAAAGGCCTATTCAAAGTCGATCACTATAAGCCAGCCAAGGACGACAACTACAAGCCA
TCAGATC
Found at i:74388848 original size:47 final size:47
Alignment explanation
Indices: 74388791--74389016 Score: 389
Period size: 47 Copynumber: 4.8 Consensus size: 47
74388781 TATTTGAATA
*
74388791 AATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
74388838 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
74388885 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
74388932 AATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
74388979 AATGTAAAAGTGTATATATGTGATAAGGCCGAATGGCC
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
74389017 AGTGTATATA
Statistics
Matches: 168, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 168 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:74388901 original size:94 final size:94
Alignment explanation
Indices: 74388791--74389272 Score: 501
Period size: 94 Copynumber: 5.3 Consensus size: 94
74388781 TATTTGAATA
* * *
74388791 AATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
74388856 TGTGATAAGGCCTAATGGCCGATATGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
*
74388885 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGCGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
74388950 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
74388979 AATGTAAAAGTGTATATATGTGATAAGGCCGAATGGCCAGTGT-AT--ATAT--ATGTG-ATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
74389037 -G-GCCTAATGGCC-AAT-G-TGATGAATG-TG
66 TGTG-ATAA-GGCCTAATGGCCGATG--TGATG
* *
74389064 AAAGTGTATATA-TGTGATA-A-G-GCCTAATGGCCG-AT-------GTGATGAATGTGAAAGTG
1 AATGTG-A-A-AGTGT-ATATATGTG-ATAA-GGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
74389117 TATATATGTGATAAGGCCTAATGGCTGATGTGATG
60 TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
74389152 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * * *
74389217 TGTGATAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
74389246 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
74389273 TCCCGAAGGG
Statistics
Matches: 324, Mismatches: 29, Indels: 70
0.77 0.07 0.17
Matches are distributed among these distances:
79 2 0.01
80 2 0.01
82 3 0.01
84 8 0.02
85 16 0.05
86 31 0.10
87 31 0.10
88 17 0.05
89 9 0.03
91 2 0.01
93 2 0.01
94 201 0.62
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:74389021 original size:30 final size:31
Alignment explanation
Indices: 74388987--74389049 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 31
74388977 TGAATGTAAA
74388987 AGTG-TATATATGTGATAAGGCCGAATGGCC
1 AGTGATATATATGTGATAAGGCCGAATGGCC
*
74389017 AGTGTATATATATGTGATAAGGCCTAATGGCC
1 AGTG-ATATATATGTGATAAGGCCGAATGGCC
74389049 A
1 A
74389050 ATGTGATGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 4 0.13
32 26 0.87
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.29
Consensus pattern (31 bp):
AGTGATATATATGTGATAAGGCCGAATGGCC
Found at i:74389039 original size:79 final size:79
Alignment explanation
Indices: 74388944--74389095 Score: 277
Period size: 79 Copynumber: 1.9 Consensus size: 79
74388934 TGCGAAAGTG
*
74388944 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTAAAAGTGTATATATGTGATAAGGCC
74389009 GAATGGCCAGTGTA
66 GAATGGCCAGTGTA
*
74389023 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTAAAAGTGTATATATGTGATAAGGCC
*
74389088 TAATGGCC
66 GAATGGCC
74389096 GATGTGATGA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 70 1.00
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.30
Consensus pattern (79 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTAAAAGTGTATATATGTGATAAGGCC
GAATGGCCAGTGTA
Found at i:74389044 original size:173 final size:173
Alignment explanation
Indices: 74388850--74389190 Score: 619
Period size: 173 Copynumber: 2.0 Consensus size: 173
74388840 TGTGAAAGTG
*
74388850 TATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATATGATGAATGTGAAAGTGTATATATGTGATAAGGCC
74388915 GAATGGCCAATGTGATGAATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 GAATGGCCAATGTGATGAATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
74388980 ATGTAAAAGTGTATATATGTGATAAGGCCGAATGGCCAGTGTA
131 ATGTAAAAGTGTATATATGTGATAAGGCCGAATGGCCAGTGTA
*
74389023 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATATGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * *
74389088 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGA
66 GAATGGCCAATGTGATGAATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
74389153 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
131 ATGTAAAAGTGTATATATGTGATAAGGCCGAATGGCCA
74389191 ATGTGATGAA
Statistics
Matches: 161, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
173 161 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.29
Consensus pattern (173 bp):
TATATATGTGATAAGGCCTAATGGCCAATATGATGAATGTGAAAGTGTATATATGTGATAAGGCC
GAATGGCCAATGTGATGAATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTAAAAGTGTATATATGTGATAAGGCCGAATGGCCAGTGTA
Found at i:74389080 original size:47 final size:47
Alignment explanation
Indices: 74389023--74389272 Score: 401
Period size: 47 Copynumber: 5.3 Consensus size: 47
74389013 GGCCAGTGTA
74389023 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
74389070 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
**
74389117 TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
74389164 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* * * * *
74389211 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
74389258 TATAAATGTGATAAG
1 TATATATGTGATAAG
74389273 TCCCGAAGGG
Statistics
Matches: 190, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 190 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:74389189 original size:220 final size:220
Alignment explanation
Indices: 74388803--74389237 Score: 753
Period size: 220 Copynumber: 2.0 Consensus size: 220
74388793 TGTGAAAGTG
* *
74388803 TATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
74388868 TAATGGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
66 TAATGGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
74388933 ATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAAAGTGTATATAT
131 ATGCGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAAGTGTATATAT
74388998 GTGATAAGGCCGAATGGCCAGTGTA
196 GTGATAAGGCCGAATGGCCAGTGTA
74389023 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * **
74389088 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGA
66 TAATGGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * *
74389153 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACGTGTATATAT
131 ATGCGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAAGTGTATATAT
* *
74389218 GTGATAGGGCCGAGTGGCCA
196 GTGATAAGGCCGAATGGCCA
74389238 ACGTGATGGA
Statistics
Matches: 202, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
220 202 1.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (220 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
ATGCGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAGTGTA
Found at i:74390743 original size:40 final size:40
Alignment explanation
Indices: 74390699--74390943 Score: 382
Period size: 40 Copynumber: 6.1 Consensus size: 40
74390689 GAGAATTGAG
**
74390699 AGTGATGTATCCGGGCTAAGTCTTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
74390739 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
74390779 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
74390819 AGTGATGTATCCAGGCTAAGTCCCAAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
74390859 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
74390899 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
74390939 AGTGA
1 AGTGA
74390944 CGTGTATTCG
Statistics
Matches: 190, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 190 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:74393389 original size:27 final size:28
Alignment explanation
Indices: 74393359--74393428 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
74393349 ATAGTGAGTC
* *
74393359 CGCACACCTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
74393386 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
74393414 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74393429 GTACAAGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:74395813 original size:46 final size:46
Alignment explanation
Indices: 74395760--74395936 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
74395750 TATTTGGGCA
74395760 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
74395806 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* **
74395853 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
74395899 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
74395937 CGGGTTACAT
Statistics
Matches: 109, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 65 0.60
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:74395915 original size:93 final size:93
Alignment explanation
Indices: 74395756--74395928 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
74395746 GGGATATTTG
* *
74395756 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
74395821 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
74395849 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
74395914 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
74395929 CTTATGGACG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74398922 original size:15 final size:15
Alignment explanation
Indices: 74398883--74398962 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
74398873 GTATCTTGGG
*
74398883 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
74398898 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
74398913 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
74398928 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
74398943 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
74398957 TTTCTT
1 TTTCTT
74398963 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:74398952 original size:30 final size:30
Alignment explanation
Indices: 74398874--74398961 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
74398864 CATAGTATCG
* * *
74398874 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
74398904 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
74398934 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
74398962 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:74401383 original size:40 final size:39
Alignment explanation
Indices: 74401317--74401458 Score: 119
Period size: 39 Copynumber: 3.6 Consensus size: 39
74401307 AAATTGAATG
* *
74401317 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGCCCGAAGGCAATTATGCTAGAAATT
* * ***
74401356 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTATGCTAGAAATT
* * **
74401396 ATATCC-GGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAA-GCCCGAAGGCAATT-ATGCTAGAAATT
*
74401435 CTATCC-GGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGGCA
74401459 TTTGTGCACG
Statistics
Matches: 86, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
38 4 0.05
39 56 0.65
40 26 0.30
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTATGCTAGAAATT
Found at i:74401440 original size:39 final size:38
Alignment explanation
Indices: 74401353--74401481 Score: 152
Period size: 39 Copynumber: 3.3 Consensus size: 38
74401343 TATGCTGGAA
* *
74401353 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCC-GGCTAAGACCCGAAGGC-ATTGTGCGAGTG
* * *
74401393 GTTATATCCGGCTAAGGCCCGAAGGCATTCGTGCGAGTT
1 ATTATATCCGGCTAAGACCCGAAGGCATT-GTGCGAGTG
*
74401432 ATTCTATCCGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGCTAAGACCCGAAGGCA-TTGTGCGA-GTG
74401471 ATTATATCCGG
1 ATTATATCCGG
74401482 TTATATTCCG
Statistics
Matches: 76, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
38 4 0.05
39 62 0.82
40 10 0.13
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (38 bp):
ATTATATCCGGCTAAGACCCGAAGGCATTGTGCGAGTG
Found at i:74403701 original size:28 final size:28
Alignment explanation
Indices: 74403636--74403734 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
74403626 CATGAGATTG
* * *
74403636 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
74403665 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
74403693 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
74403721 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
74403735 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:74419924 original size:30 final size:30
Alignment explanation
Indices: 74419888--74419949 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
74419878 AATCGGAAGT
74419888 TTTGGCACTAAGTGTGCAATTTAAACTAGC
1 TTTGGCACTAAGTGTGCAATTTAAACTAGC
**
74419918 TTTGGCACTAAGTGTGCGGTTTAAACTAGC
1 TTTGGCACTAAGTGTGCAATTTAAACTAGC
74419948 TT
1 TT
74419950 CGGCTACTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGCAATTTAAACTAGC
Found at i:74423581 original size:42 final size:43
Alignment explanation
Indices: 74423522--74423733 Score: 195
Period size: 43 Copynumber: 5.0 Consensus size: 43
74423512 CCTGATTTCA
* * *
74423522 TCACCGGCCA-TA-AGCCTGCTAGACCTTTAAGTCTGA-ATTCA-T
1 TCACCGG-CATTATAGCCTGCTAG-CCTTGAAGCCCGATA-TCATT
* *
74423564 TCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCATT
1 TCACCGGCATTATAGCCTGCTAGCCTTGAAGCCCGATATCATT
* * * * *
74423606 TCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTATC
1 TCACCGGCATTATAGCCTGCTAGCCTTGAAGCCCGATATCATT
* **
74423649 TCACCGGCATTATAGCCTGTTAGGCC-CAAAGCCCGATATCATT
1 TCACCGGCATTATAGCCTGCTA-GCCTTGAAGCCCGATATCATT
*
74423692 TCACCGGCATTATAGCCTGCTAGGCC-CGAAGCCCGTATATCA
1 TCACCGGCATTATAGCCTGCTA-GCCTTGAAGCCCG-ATATCA
74423734 CATTTGATAA
Statistics
Matches: 145, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
41 14 0.10
42 30 0.21
43 93 0.64
44 8 0.06
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGCCTTGAAGCCCGATATCATT
Found at i:74423631 original size:43 final size:43
Alignment explanation
Indices: 74423563--74423733 Score: 245
Period size: 43 Copynumber: 4.0 Consensus size: 43
74423553 TCTGAATTCA
* **
74423563 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * *
74423605 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * *
74423648 CTCACCGGCATTATAGCCTGTTAGGCCCAAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
74423691 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGTATATCA
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCG-ATATCA
74423734 CATTTGATAA
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 12 0.11
43 96 0.84
44 6 0.05
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:74424210 original size:12 final size:12
Alignment explanation
Indices: 74424193--74424220 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
74424183 TAATCAACTA
74424193 ATCAAGCATTGT
1 ATCAAGCATTGT
74424205 ATCAAGCATTGT
1 ATCAAGCATTGT
74424217 ATCA
1 ATCA
74424221 TGAGTATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (12 bp):
ATCAAGCATTGT
Found at i:74424634 original size:70 final size:70
Alignment explanation
Indices: 74424517--74424651 Score: 225
Period size: 70 Copynumber: 1.9 Consensus size: 70
74424507 TAGCACATAA
* * * * *
74424517 CACCATGATTTTGTCCTAATTTGGACAGCCAATAATTTACAGTATTACAGCAGCATATTAATTAG
1 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGAAAATTAATTAG
74424582 CTAAG
66 CTAAG
74424587 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGAAAATTAATTAG
1 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGAAAATTAATTAG
74424652 TAATAAACTA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (70 bp):
CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGAAAATTAATTAG
CTAAG
Found at i:74431439 original size:30 final size:30
Alignment explanation
Indices: 74431403--74431464 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
74431393 AATCGAAAGT
74431403 TTTGGCACTAAATGTGC-GATTTAAACTAGC
1 TTTGGCACTAAATGT-CTGATTTAAACTAGC
*
74431433 TTTGGCACTAAGTGTCTGATTTAAACTAGC
1 TTTGGCACTAAATGTCTGATTTAAACTAGC
74431463 TT
1 TT
74431465 CGGCTACTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 1 0.03
30 29 0.97
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (30 bp):
TTTGGCACTAAATGTCTGATTTAAACTAGC
Found at i:74433925 original size:17 final size:19
Alignment explanation
Indices: 74433896--74433932 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
74433886 TTAGTATTCT
74433896 TACCAAGAGTTCAT-CTCA
1 TACCAAGAGTTCATACTCA
74433914 TACCAA-AGTTCATACTCA
1 TACCAAGAGTTCATACTCA
74433932 T
1 T
74433933 GGGTTTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (19 bp):
TACCAAGAGTTCATACTCA
Found at i:74434426 original size:45 final size:45
Alignment explanation
Indices: 74434371--74434461 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
74434361 ACATATCCAT
74434371 ATTATAATTTATTAAATTCATGCATAATAAAACATATAACAATAC
1 ATTATAATTTATTAAATTCATGCATAATAAAACATATAACAATAC
*
74434416 ATTATCATTTATTAAATTCATGCATAATAAAACATATAACAATAC
1 ATTATAATTTATTAAATTCATGCATAATAAAACATATAACAATAC
74434461 A
1 A
74434462 AGTACAACAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (45 bp):
ATTATAATTTATTAAATTCATGCATAATAAAACATATAACAATAC
Found at i:74437367 original size:19 final size:18
Alignment explanation
Indices: 74437343--74437379 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
74437333 TTAGCTAAAG
74437343 CAATGTATTTCTAACACTA
1 CAATGTATTTCTAA-ACTA
*
74437362 CAATGTCTTTCTAAACTA
1 CAATGTATTTCTAAACTA
74437380 TAGCTAAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.38
Consensus pattern (18 bp):
CAATGTATTTCTAAACTA
Found at i:74440352 original size:36 final size:36
Alignment explanation
Indices: 74440300--74440370 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
74440290 GAAAAGAAAA
*
74440300 TGATAGATAGGGTTTTTGGCATTATTATAGTACACT
1 TGATAGATAGGCTTTTTGGCATTATTATAGTACACT
* *
74440336 TGATAGCTAGGCTTTTTGGCATTATTATTGTACAC
1 TGATAGATAGGCTTTTTGGCATTATTATAGTACAC
74440371 CTTATGTCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.25, C:0.11, G:0.21, T:0.42
Consensus pattern (36 bp):
TGATAGATAGGCTTTTTGGCATTATTATAGTACACT
Found at i:74445330 original size:27 final size:27
Alignment explanation
Indices: 74445292--74445350 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
74445282 AATCTCAAAC
74445292 AATCATCTTTATCAACTCTGAATTCTG
1 AATCATCTTTATCAACTCTGAATTCTG
74445319 AATCATCTTTATCAACTCTGAATTCTG
1 AATCATCTTTATCAACTCTGAATTCTG
74445346 AATCA
1 AATCA
74445351 GACACCACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (27 bp):
AATCATCTTTATCAACTCTGAATTCTG
Found at i:74473269 original size:40 final size:40
Alignment explanation
Indices: 74473177--74473367 Score: 165
Period size: 40 Copynumber: 4.8 Consensus size: 40
74473167 GATATAACGG
* ** * *
74473177 CTCGCTCAAATGCCTTCGGGACGAAGCCTGG-TTATAGTGA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAA
* * *
74473217 CTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAA
* * *
74473257 TTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAA
** * * * *
74473296 CTCGCATGAATGCCTTC-GGATCCTAGTCCGGATATAGTCA
1 CTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAA
*
74473336 CTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 C-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
74473368 CATCATTCGA
Statistics
Matches: 119, Mismatches: 27, Indels: 10
0.76 0.17 0.06
Matches are distributed among these distances:
38 2 0.02
39 29 0.24
40 77 0.65
41 11 0.09
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAA
Found at i:74473299 original size:79 final size:80
Alignment explanation
Indices: 74473216--74473367 Score: 193
Period size: 79 Copynumber: 1.9 Consensus size: 80
74473206 GGTTATAGTG
* * * *
74473216 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGT-AATTTGCACAAATGCCTTCGGG-C
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTCAATTAGCACAAA-GCCTTCGGGAC
74473278 TTAGCCCGGATTTATTA
64 TTAGCCCGGATTTATTA
* ** *
74473295 ACTCGCATGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTCAATTAGCACAAAGCCTTCGGGACTT
74473360 AGCCCGGA
66 AGCCCGGA
74473368 CATCATTCGA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
78 3 0.05
79 38 0.61
80 21 0.34
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTCAATTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:74485191 original size:44 final size:44
Alignment explanation
Indices: 74485143--74485312 Score: 195
Period size: 44 Copynumber: 3.9 Consensus size: 44
74485133 CGATACCAAA
* ** *
74485143 ATAGCTTCTGTTAAT-TGTGATGGCACTAAGTGTGCGGAATTATT
1 ATAGCTTCTGTTAATCT-TTAAAGCACTAAGTGTGCAGAATTATT
* *
74485187 ATAGCTT-TGGCTAATCTTTAAAGCACTAAGTATGCAGAATTATT
1 ATAGCTTCT-GTTAATCTTTAAAGCACTAAGTGTGCAGAATTATT
74485231 ATAGCTTC-GTCTAATCTTTAAAGCACTAAGTGTGCTA-AATTATT
1 ATAGCTTCTGT-TAATCTTTAAAGCACTAAGTGTGC-AGAATTATT
* * *
74485275 ATAGCTTCGGCTAATCTTTAAATCACTAAGTGTGCAGA
1 ATAGCTTCTGTTAATCTTTAAAGCACTAAGTGTGCAGA
74485313 TGTTAAAGCA
Statistics
Matches: 109, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
43 3 0.03
44 103 0.94
45 3 0.03
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (44 bp):
ATAGCTTCTGTTAATCTTTAAAGCACTAAGTGTGCAGAATTATT
Found at i:74486434 original size:18 final size:18
Alignment explanation
Indices: 74486411--74486446 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
74486401 CTTTGAAATG
74486411 TTGAAAATTTTATATGTT
1 TTGAAAATTTTATATGTT
*
74486429 TTGAAACTTTTATATGTT
1 TTGAAAATTTTATATGTT
74486447 ATCAATTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.11, T:0.56
Consensus pattern (18 bp):
TTGAAAATTTTATATGTT
Found at i:74491333 original size:93 final size:93
Alignment explanation
Indices: 74491204--74491375 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
74491194 GCCCATAAGT
* * *
74491204 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74491269 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
74491297 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74491362 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
74491376 CAAATATCCA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74491371 original size:46 final size:46
Alignment explanation
Indices: 74491196--74491371 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
74491186 TGTAACCCGC
* * * *
74491196 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
74491242 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
74491292 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
74491335 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74491372 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 67 0.60
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:74495683 original size:26 final size:26
Alignment explanation
Indices: 74495654--74495749 Score: 86
Period size: 26 Copynumber: 3.7 Consensus size: 26
74495644 TTAATTTACC
*
74495654 AAATTACTGAAATACCCCCAATTGTA
1 AAATTACTGAAATACCCCCGATTGTA
* * *
74495680 AAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACTGAAA-TACCCCC-GATTGTA
* ***
74495707 AAATTACCGAAATACCATTGATTGTA
1 AAATTACTGAAATACCCCCGATTGTA
*
74495733 AAATTACTAAAATACCC
1 AAATTACTGAAATACCC
74495750 TTGTAGGGTA
Statistics
Matches: 54, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
25 3 0.06
26 33 0.61
27 15 0.28
28 3 0.06
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (26 bp):
AAATTACTGAAATACCCCCGATTGTA
Found at i:74495774 original size:27 final size:27
Alignment explanation
Indices: 74495742--74495928 Score: 243
Period size: 27 Copynumber: 7.0 Consensus size: 27
74495732 AAAATTACTA
* *
74495742 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
74495769 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
74495796 AAATACCCCTGTATGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
74495823 GAATACCCCTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
**
74495850 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
74495877 AAATACCCCTGTTGGGT-GAAATTACCG
1 AAATACCCCTGTAGGGTAG-AATTACCG
* * * *
74495904 AGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
74495929 ATTTTGCCCC
Statistics
Matches: 143, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
26 17 0.12
27 126 0.88
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:74495839 original size:81 final size:81
Alignment explanation
Indices: 74495708--74495902 Score: 250
Period size: 81 Copynumber: 2.4 Consensus size: 81
74495698 CGGTTTATAA
** * * * *
74495708 AATTACCGAAATACCATTG-ATTGTAAAATTACTAAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCGAAATACCCCTGTATGGTAAAATTACCAAAATACCCCTGTAGGGTAGAAATACCAAAA
74495772 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* ** *
74495788 AATTACCGAAATACCCCTGTATGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCAAAA
1 AATTACCGAAATACCCCTGTATGGTAAAATTACCAAAATACCCCTGTAGGGTAGAAATACCAAAA
74495853 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
** *
74495869 AATTACTAAAATACCCCTGT-TGGGTGAAATTACC
1 AATTACCGAAATACCCCTGTAT-GGTAAAATTACC
74495903 GAGATACCTT
Statistics
Matches: 99, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 18 0.18
81 81 0.82
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTATGGTAAAATTACCAAAATACCCCTGTAGGGTAGAAATACCAAAA
TACCCCTGTAGGGTAG
Found at i:74496331 original size:19 final size:19
Alignment explanation
Indices: 74496309--74496366 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
74496299 TTCTAACTTT
74496309 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
74496328 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
74496340 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
74496359 TGATTCTG
1 TGATTCTG
74496367 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:74496336 original size:6 final size:6
Alignment explanation
Indices: 74496321--74496406 Score: 68
Period size: 6 Copynumber: 14.0 Consensus size: 6
74496311 ATTCTGTTAC
* * *
74496321 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
74496370 CTGATT CTG-TCAC CTAATT CTGATT CTGATT TTGATT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT
74496407 TTAGTTCTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
5 3 0.05
6 54 0.84
7 5 0.08
8 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:74496341 original size:31 final size:31
Alignment explanation
Indices: 74496306--74496406 Score: 166
Period size: 31 Copynumber: 3.3 Consensus size: 31
74496296 ACATTCTAAC
74496306 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
74496337 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
* * * *
74496368 TTCTGATTCTGTCACCTAATTCTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
74496399 TTTTGATT
1 TTTTGATT
74496407 TTAGTTCTAA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 65 1.00
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.50
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACTGATTCTGA
Found at i:74506127 original size:42 final size:43
Alignment explanation
Indices: 74506051--74506202 Score: 116
Period size: 43 Copynumber: 3.6 Consensus size: 43
74506041 TCCCAGATCT
* * * * *
74506051 GGTCTTACATGT--ATCAAATATCGATGCCACTGTCCTAGACAG
1 GGTCTTACACGTAAATCAAATATCGATACAAATGTCCCAGA-AG
*
74506093 GGTCTTACACG-AAATCAAATAT-GATACAAATGTCCCAGAAT
1 GGTCTTACACGTAAATCAAATATCGATACAAATGTCCCAGAAG
** * * * * *
74506134 GGTCTTACACGTAAATCTCAGATCTATGCCAATGTCCCAGACG
1 GGTCTTACACGTAAATCAAATATCGATACAAATGTCCCAGAAG
* *
74506177 TGGTCTTACACG-AAAACACATATCGA
1 -GGTCTTACACGTAAATCAAATATCGA
74506203 ATCCTATGTC
Statistics
Matches: 87, Mismatches: 18, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
41 12 0.14
42 31 0.36
43 33 0.38
44 11 0.13
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAAATATCGATACAAATGTCCCAGAAG
Found at i:74507232 original size:20 final size:22
Alignment explanation
Indices: 74507207--74507246 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
74507197 ATCAATTAGG
74507207 CACTTTAACA-ATTA-GCAAGC
1 CACTTTAACATATTACGCAAGC
*
74507227 CACTTTTACATATTACGCAA
1 CACTTTAACATATTACGCAA
74507247 TGTGGTCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 4 0.24
22 4 0.24
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (22 bp):
CACTTTAACATATTACGCAAGC
Found at i:74514509 original size:42 final size:42
Alignment explanation
Indices: 74514398--74514561 Score: 213
Period size: 42 Copynumber: 3.9 Consensus size: 42
74514388 TACCATACCA
* *
74514398 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCG
* *
74514440 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* * *
74514483 ATGCTATATCCCAGATATGGTCTTACACGAAATCTCATATCT
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* * *
74514525 ATGCCATATCCCAGATCTAGTCTTACATGAAGTCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCA
74514562 ATAACCCTAA
Statistics
Matches: 106, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
42 72 0.68
43 34 0.32
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:74514529 original size:85 final size:84
Alignment explanation
Indices: 74514398--74514561 Score: 229
Period size: 85 Copynumber: 1.9 Consensus size: 84
74514388 TACCATACCA
* * * * *
74514398 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCCCAGCTATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCC-ATAGCCCAGATATAGTC
74514463 TTACACGAAGTCTCATATCG
65 TTACACGAAGTCTCATATCG
* * * *
74514483 ATGCTATATCCCAGATATGGTCTTACACGAAATCTCATATCTATGCCATATCCCAGATCTAGTCT
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCATAGCCCAGATATAGTCT
*
74514548 TACATGAAGTCTCA
66 TACACGAAGTCTCA
74514562 ATAACCCTAA
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
84 27 0.39
85 42 0.61
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCATAGCCCAGATATAGTCT
TACACGAAGTCTCATATCG
Found at i:74517433 original size:23 final size:23
Alignment explanation
Indices: 74517403--74517451 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
74517393 CAAGCTTGAA
74517403 AATTAGAGAAATCTAGATACCAG
1 AATTAGAGAAATCTAGATACCAG
*
74517426 AATTAGAGAAATCTAGATACCGG
1 AATTAGAGAAATCTAGATACCAG
74517449 AAT
1 AAT
74517452 CACCACATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.22
Consensus pattern (23 bp):
AATTAGAGAAATCTAGATACCAG
Found at i:74518993 original size:53 final size:53
Alignment explanation
Indices: 74518811--74519017 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 53
74518801 ATTAGGGTTT
* * * * * * *
74518811 AAGGATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATAGTAAG-TTCATAAGGC
* * * * * *
74518865 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATAG-T-AAGTTC-ATAAGGC
* * * *
74518920 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATAGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATAGTAAGTTCATAAGGC
* * *
74518973 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATAGTAAGTT
74519018 TAAAAAGGAA
Statistics
Matches: 120, Mismatches: 29, Indels: 9
0.76 0.18 0.06
Matches are distributed among these distances:
53 47 0.39
54 33 0.28
55 37 0.31
56 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATAGTAAGTTCATAAGGC
Found at i:74524842 original size:28 final size:29
Alignment explanation
Indices: 74524810--74524924 Score: 121
Period size: 29 Copynumber: 4.0 Consensus size: 29
74524800 TACCTGTATC
*
74524810 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* *
74524838 TGGCCCATTAGGCCCAAATCAC-TTGTATA
1 TGGCCCATTAAGCCCAAATCACATT-CATA
*
74524867 TGGCCCATT-AGACCCAAATCACATTTATA
1 TGGCCCATTAAG-CCCAAATCACATTCATA
* * *
74524896 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
74524924 T
1 T
74524925 TGATGCTCAC
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
28 29 0.39
29 42 0.57
30 3 0.04
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCACATTCATA
Found at i:74524867 original size:29 final size:28
Alignment explanation
Indices: 74524810--74524911 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
74524800 TACCTGTATC
*
74524810 TGGCCCATTAAGCCC-AATCA-TATTCATA
1 TGGCCCATTAGGCCCAAATCACT-TT-ATA
74524838 TGGCCCATTAGGCCCAAATCACTTGTATA
1 TGGCCCATTAGGCCCAAATCACTT-TATA
*
74524867 TGGCCCATTAGACCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCAC-TTTATA
*
74524896 TGGCCCGTTAGGCCCA
1 TGGCCCATTAGGCCCA
74524912 GTCACATTCA
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
28 14 0.21
29 48 0.73
30 4 0.06
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCACTTTATA
Found at i:74525155 original size:8 final size:8
Alignment explanation
Indices: 74525139--74525181 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
74525129 ACAAACTTTT
74525139 GGCATTTC
1 GGCATTTC
*
74525147 GGTATTTC
1 GGCATTTC
*
74525155 GACATTTC
1 GGCATTTC
74525163 GGCATTTC
1 GGCATTTC
*
74525171 GACATTTC
1 GGCATTTC
74525179 GGC
1 GGC
74525182 TTTTGCCGAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.37
Consensus pattern (8 bp):
GGCATTTC
Found at i:74525162 original size:16 final size:16
Alignment explanation
Indices: 74525141--74525181 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
74525131 AAACTTTTGG
*
74525141 CATTTCGGTATTTCGA
1 CATTTCGGCATTTCGA
74525157 CATTTCGGCATTTCGA
1 CATTTCGGCATTTCGA
74525173 CATTTCGGC
1 CATTTCGGC
74525182 TTTTGCCGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.17, C:0.24, G:0.20, T:0.39
Consensus pattern (16 bp):
CATTTCGGCATTTCGA
Found at i:74529556 original size:79 final size:80
Alignment explanation
Indices: 74529451--74529605 Score: 224
Period size: 79 Copynumber: 1.9 Consensus size: 80
74529441 GGATATAGCT
* * * * * *
74529451 ACTCGCTCAATTGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCTTCGGGACT
74529515 TAGCCCGGTTATAGTA
65 TAGCCCGGTTATAGTA
*
74529531 ACTCGCACAAATGCCTTCAGG-CTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTT
74529595 AGCCCGGTTAT
66 AGCCCGGTTAT
74529606 CATCTGAATA
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
79 48 0.72
80 19 0.28
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCAGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTT
AGCCCGGTTATAGTA
Found at i:74529578 original size:39 final size:40
Alignment explanation
Indices: 74529451--74529605 Score: 224
Period size: 40 Copynumber: 3.9 Consensus size: 40
74529441 GGATATAGCT
* *
74529451 ACTCGCTCAATTGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
74529491 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
74529531 ACTCGCACAAATGCCTTCAGG-CTTAGCCCGG-AATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
74529570 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
74529606 CATCTGAATA
Statistics
Matches: 104, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.32
40 69 0.66
41 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:74531371 original size:29 final size:29
Alignment explanation
Indices: 74531339--74531410 Score: 108
Period size: 29 Copynumber: 2.5 Consensus size: 29
74531329 TATTCATATA
* *
74531339 GCCCTTTAGGCCCAAATCACCTGTATACG
1 GCCCATTAGGCCCAAATCACATGTATACG
* *
74531368 GCCCATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCCAAATCACATGTATACG
74531397 GCCCATTAGGCCCA
1 GCCCATTAGGCCCA
74531411 GTCACATTCT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACATGTATACG
Found at i:74531647 original size:8 final size:8
Alignment explanation
Indices: 74531634--74531677 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
74531624 ATAGCCAAAC
74531634 TTTCGGCA
1 TTTCGGCA
74531642 TTTCGGCA
1 TTTCGGCA
*
74531650 TTTCGGTA
1 TTTCGGCA
74531658 TTTCGGCA
1 TTTCGGCA
*
74531666 TTTTGGCA
1 TTTCGGCA
74531674 TTTC
1 TTTC
74531678 AGCTTTTGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.11, C:0.20, G:0.23, T:0.45
Consensus pattern (8 bp):
TTTCGGCA
Found at i:74535830 original size:53 final size:53
Alignment explanation
Indices: 74535648--74535854 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 53
74535638 ATTAGGGTTT
* * * * *
74535648 AAGGAAACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * *
74535702 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* ** * *
74535757 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * ** *
74535810 AAGGATACCACGTAAGACCATGTTAAGACATGGAAATGGTAAGTT
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
74535855 TAAAAAGGAA
Statistics
Matches: 123, Mismatches: 28, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
53 44 0.36
54 39 0.32
55 40 0.33
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:74540606 original size:29 final size:29
Alignment explanation
Indices: 74540516--74540674 Score: 162
Period size: 29 Copynumber: 5.5 Consensus size: 29
74540506 ACTCGATTTC
* * **
74540516 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
74540545 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** * *
74540573 CGCACACCCAGTGCCGTAAATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
74540603 GCACACTTAGTGCCATATATTT-CAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
74540631 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
74540660 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
74540675 ATCTCGTCAC
Statistics
Matches: 108, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
28 30 0.28
29 77 0.71
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:74540653 original size:57 final size:58
Alignment explanation
Indices: 74540514--74540674 Score: 175
Period size: 57 Copynumber: 2.8 Consensus size: 58
74540504 ATACTCGATT
* * ** * *
74540514 TCGCACACTTAGTGCCATGTGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATAT-ATTTCCAGCATGCACACTTAGTGCCATACACTTCGAGC
** * * * *
74540572 TCGCACACCCAGTGCCGTAAATTTCCAGCATGCACACTTAGTGCCATATATTTC-AGC
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCGAGC
74540629 AT-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 -TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
74540675 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
57 47 0.55
58 38 0.45
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCGAGC
Found at i:74540693 original size:57 final size:57
Alignment explanation
Indices: 74540582--74540693 Score: 145
Period size: 57 Copynumber: 2.0 Consensus size: 57
74540572 TCGCACACCC
* * * *
74540582 AGTGCCGTAAATTTCCAGCATGCACACTTAGTGCCATATATTTCAGCATGCACACTT
1 AGTGCCATAAATTTCCAGCATGCACACTTAGTGCCATATATGTCACCATACACACTT
* * *
74540639 AGTGCCATATATTTCCAGCATGCACACTTAGTGCCA-ATCTCGTCACCGTACACAC
1 AGTGCCATAAATTTCCAGCATGCACACTTAGTGCCATATAT-GTCACCATACACAC
74540694 GTATTGCCCG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
56 3 0.06
57 44 0.94
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (57 bp):
AGTGCCATAAATTTCCAGCATGCACACTTAGTGCCATATATGTCACCATACACACTT
Found at i:74548664 original size:29 final size:29
Alignment explanation
Indices: 74548574--74548733 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
74548564 ACTCGATTTC
* * **
74548574 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
74548603 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
74548631 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
74548661 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
74548690 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
74548719 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
74548734 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:74553492 original size:28 final size:28
Alignment explanation
Indices: 74553427--74553525 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
74553417 CATGAGATTG
* * *
74553427 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
74553456 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
74553484 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
74553512 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
74553526 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:74561506 original size:28 final size:28
Alignment explanation
Indices: 74561441--74561539 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
74561431 CATGAGATTG
* * *
74561441 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
74561470 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
74561498 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
74561526 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
74561540 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:74566985 original size:29 final size:30
Alignment explanation
Indices: 74566952--74567014 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 30
74566942 GTTTTCATAG
74566952 TTATGGAC-TTA-TA-TTTTAGTTTGGGACTT
1 TTATGGACTTTATTATTTTTA-TTTGGGA-TT
74566981 TTATGGACTTTATTATTTTTATTTGGGATT
1 TTATGGACTTTATTATTTTTATTTGGGATT
74567011 TTAT
1 TTAT
74567015 TTTGTGGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
29 8 0.26
30 9 0.29
31 9 0.29
32 5 0.16
ACGTcount: A:0.21, C:0.05, G:0.17, T:0.57
Consensus pattern (30 bp):
TTATGGACTTTATTATTTTTATTTGGGATT
Found at i:74567902 original size:27 final size:27
Alignment explanation
Indices: 74567853--74567915 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
74567843 TACAGAATAC
74567853 GCCACAAAGGCGATCCATATAGAGTGT
1 GCCACAAAGGCGATCCATATAGAGTGT
* * *
74567880 GCCACAAAGGCTATTCATTTAGAGTGT
1 GCCACAAAGGCGATCCATATAGAGTGT
*
74567907 GTCACAAAG
1 GCCACAAAG
74567916 ACATTTCTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (27 bp):
GCCACAAAGGCGATCCATATAGAGTGT
Found at i:74572484 original size:39 final size:39
Alignment explanation
Indices: 74572403--74572565 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
74572393 TATGGTAACC
* *
74572403 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
74572443 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
74572482 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
74572521 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
74572560 CGCACA
1 CGCACA
74572566 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:74578415 original size:39 final size:39
Alignment explanation
Indices: 74578367--74578608 Score: 297
Period size: 39 Copynumber: 5.9 Consensus size: 39
74578357 GAATGTTCGA
*
74578367 GTGATATCCGGGCTAAGGCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
74578406 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
74578445 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
74578484 GTGATATCCGGGCTAAGCCCGAAGGCAATCGCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCT-------AA-GC---C-CGAAGGCAATTGTGCGAGTT
*
74578535 ATGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
74578573 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
74578609 GGTTACCATA
Statistics
Matches: 178, Mismatches: 11, Indels: 27
0.82 0.05 0.12
Matches are distributed among these distances:
38 24 0.13
39 97 0.54
40 17 0.10
42 2 0.01
43 2 0.01
46 2 0.01
47 2 0.01
50 8 0.04
51 24 0.13
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:74578458 original size:78 final size:78
Alignment explanation
Indices: 74578368--74578608 Score: 331
Period size: 78 Copynumber: 2.9 Consensus size: 78
74578358 AATGTTCGAG
*
74578368 TGATATCCGGGCTAAGGCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
74578433 ATTGTGCGAGCTA
66 ATTGTGCGAGCTA
74578446 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCT-------AA-GC-
74578511 ATCGCGAAGGCAATTGTGCGAGCTA
57 --C-CGAAGGCAATTGTGCGAGCTA
*
74578536 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
*
74578600 ATTTGTGCG
65 AATTGTGCG
74578609 GGTTACCATA
Statistics
Matches: 147, Mismatches: 3, Indels: 26
0.84 0.02 0.15
Matches are distributed among these distances:
78 66 0.45
79 1 0.01
81 1 0.01
82 3 0.02
85 2 0.01
86 2 0.01
89 46 0.31
90 26 0.18
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.22
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
ATTGTGCGAGCTA
Found at i:74578524 original size:51 final size:50
Alignment explanation
Indices: 74578464--74578562 Score: 171
Period size: 51 Copynumber: 2.0 Consensus size: 50
74578454 GGGCTAAGCC
* *
74578464 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATCG
1 CGAAGGCAATTGTGCGAGCTATGATA-CCGGGCTAAGCCCGAAGGCAATCG
74578515 CGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCAAT
1 CGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCAAT
74578563 TGTGCGAGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
50 22 0.48
51 24 0.52
ACGTcount: A:0.27, C:0.22, G:0.32, T:0.18
Consensus pattern (50 bp):
CGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCAATCG
Done.