Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 25 of 770
Found at i:6928740 original size:26 final size:25
Alignment explanation
Indices: 6928693--6928741 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
6928683 GCGAGGCTGC
*
6928693 CAGATATTGTGACGAAGTCACCAAA
1 CAGATATTGTGACGAAGCCACCAAA
* *
6928718 CAGATATATGTGGCGAGGCCACCA
1 CAGATAT-TGTGACGAAGCCACCA
6928742 GATTGCAGCG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 7 0.35
26 13 0.65
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.18
Consensus pattern (25 bp):
CAGATATTGTGACGAAGCCACCAAA
Found at i:6929311 original size:17 final size:17
Alignment explanation
Indices: 6929289--6929323 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
6929279 CTTACGAATT
6929289 AACGATAACTAACATAA
1 AACGATAACTAACATAA
6929306 AACGATAACTAACATAA
1 AACGATAACTAACATAA
6929323 A
1 A
6929324 TCCACGTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.60, C:0.17, G:0.06, T:0.17
Consensus pattern (17 bp):
AACGATAACTAACATAA
Found at i:6932608 original size:11 final size:11
Alignment explanation
Indices: 6932592--6932616 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6932582 CACCCATACA
6932592 TAGTTGCTACG
1 TAGTTGCTACG
6932603 TAGTTGCTACG
1 TAGTTGCTACG
6932614 TAG
1 TAG
6932617 AATCACATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.16, G:0.28, T:0.36
Consensus pattern (11 bp):
TAGTTGCTACG
Found at i:6937394 original size:46 final size:46
Alignment explanation
Indices: 6937327--6937593 Score: 218
Period size: 46 Copynumber: 5.8 Consensus size: 46
6937317 TGTAACCCGC
* * * *
6937327 CCATAAGCGAACTCAGACTCAACACAACGAGCTCGGGTGTTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGTAT
* * * *
6937373 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGT-T
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGTAT
** * * * * *
6937419 AAATTTCA-CAAACTCGGACTCAACTCAACAAGTTCGGACGTTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGTAT
* * * *
6937466 CCATAAGTGAACTCGGACTCAACTCAACTAGTTCGGATGCCTAGT-T
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGTAT
* * **
6937512 ACATTACA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
1 CCA-TA-AGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGTAT
* * *
6937559 CCATAAGTGAACTTGGACTCAACTCAATGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
6937594 AATGCCAAAA
Statistics
Matches: 170, Mismatches: 41, Indels: 20
0.74 0.18 0.09
Matches are distributed among these distances:
45 3 0.02
46 96 0.56
47 68 0.40
48 3 0.02
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGTAT
Found at i:6937436 original size:47 final size:47
Alignment explanation
Indices: 6937381--6937549 Score: 182
Period size: 47 Copynumber: 3.6 Consensus size: 47
6937371 ATCCATAAGT
* *
6937381 GAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTAAATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * * * * * * *
6937428 AAACTCGGACTCAACTCAACAAGTTCGGACG-TTCGCATCCA--TAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATTTCA-C
* *
6937474 GAACTCGGACTCAACTCAACTAGTTCGGATGCCTAGTTACATTACAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
6937521 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
6937550 CGTTCACATC
Statistics
Matches: 95, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 2 0.02
46 33 0.35
47 59 0.62
48 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:6937499 original size:93 final size:93
Alignment explanation
Indices: 6937336--6937599 Score: 395
Period size: 93 Copynumber: 2.8 Consensus size: 93
6937326 CCCATAAGCG
* * * ** *
6937336 AACTCAGACTCAACACAACGAGCTCGGGTGTTCGTATCCATAAGTGAACTCGGACTCAACTCAAT
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAT
*
6937401 GAGTTCGGATGCCTAGTTAAATTTCACA
66 GAGTTCGGATGCCTAGTTAAATTACACA
*
6937429 AACTCGGACTCAACTCAACAAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA-
* *
6937494 T-AGTTCGGATGCCTAGTTACATTACACG
65 TGAGTTCGGATGCCTAGTTAAATTACACA
* *
6937522 AACTCGGACTCAACTCAACGAGTTCGGACGTTCACATCCATAAGTGAACTTGGACTCAACTCAAT
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAT
*
6937587 GAGTTCGAATGCC
66 GAGTTCGGATGCC
6937600 AAAATATCCG
Statistics
Matches: 155, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
92 1 0.01
93 153 0.99
94 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAT
GAGTTCGGATGCCTAGTTAAATTACACA
Found at i:6940357 original size:15 final size:15
Alignment explanation
Indices: 6940339--6940377 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
6940329 TCTAAGATTG
6940339 AGAAACCCAGAATAA
1 AGAAACCCAGAATAA
*
6940354 AGAAATCCAGAATAA
1 AGAAACCCAGAATAA
6940369 AGAAACCCA
1 AGAAACCCA
6940378 AGATACGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.59, C:0.21, G:0.13, T:0.08
Consensus pattern (15 bp):
AGAAACCCAGAATAA
Found at i:6945606 original size:22 final size:23
Alignment explanation
Indices: 6945569--6945611 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
6945559 ACCCTTGCTT
* *
6945569 TTTTCTTTCTCTTCTTGTACTGA
1 TTTTCTATCTCTTCTTCTACTGA
6945592 TTTTCTAT-TCTTCTTCTACT
1 TTTTCTATCTCTTCTTCTACT
6945612 TAGGTTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.09, C:0.23, G:0.05, T:0.63
Consensus pattern (23 bp):
TTTTCTATCTCTTCTTCTACTGA
Found at i:6948158 original size:8 final size:8
Alignment explanation
Indices: 6948145--6948206 Score: 52
Period size: 8 Copynumber: 7.8 Consensus size: 8
6948135 TCGGCAAATC
6948145 CCGAAAAG
1 CCGAAAAG
*
6948153 CCGAAATG
1 CCGAAAAG
*
6948161 CCAAAAAG
1 CCGAAAAG
* *
6948169 CTGAAATG
1 CCGAAAAG
* *
6948177 TCTAAAAG
1 CCGAAAAG
*
6948185 CCGAAATG
1 CCGAAAAG
*
6948193 CCAAAAAG
1 CCGAAAAG
6948201 CCGAAA
1 CCGAAA
6948207 GTTTGGCTAC
Statistics
Matches: 38, Mismatches: 16, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.48, C:0.23, G:0.19, T:0.10
Consensus pattern (8 bp):
CCGAAAAG
Found at i:6948167 original size:16 final size:16
Alignment explanation
Indices: 6948148--6948206 Score: 91
Period size: 16 Copynumber: 3.7 Consensus size: 16
6948138 GCAAATCCCG
6948148 AAAAGCCGAAATGCCA
1 AAAAGCCGAAATGCCA
* * *
6948164 AAAAGCTGAAATGTCT
1 AAAAGCCGAAATGCCA
6948180 AAAAGCCGAAATGCCA
1 AAAAGCCGAAATGCCA
6948196 AAAAGCCGAAA
1 AAAAGCCGAAA
6948207 GTTTGGCTAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.51, C:0.20, G:0.19, T:0.10
Consensus pattern (16 bp):
AAAAGCCGAAATGCCA
Found at i:6948490 original size:28 final size:29
Alignment explanation
Indices: 6948420--6948533 Score: 110
Period size: 28 Copynumber: 3.9 Consensus size: 29
6948410 AGCATGACTG
*
6948420 TAAATGTGATTTGGGCC-AA-GTGGCCATA
1 TAAATGTGATTTGGGCCTAATG-GGCCACA
*
6948448 TGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGATTTGGGCCTAATGGGCCACA
* *
6948477 TAAATGTGA-ATGGGCCTAATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCACA
* *
6948505 TTTTAAAAGAGA-TTGGGCCTAATGGGCCA
1 ---TAAATGTGATTTGGGCCTAATGGGCCA
6948534 TATATATATA
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
28 33 0.45
29 16 0.22
30 1 0.01
31 23 0.32
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TAAATGTGATTTGGGCCTAATGGGCCACA
Found at i:6948525 original size:31 final size:29
Alignment explanation
Indices: 6948458--6948536 Score: 97
Period size: 31 Copynumber: 2.7 Consensus size: 29
6948448 TGAATGTGAT
* * *
6948458 TTGGGCCTAATGGGCCACA-TAAATGTGA
1 TTGGGCCTAATGGGCCATATTAAAAGAGA
*
6948486 ATGGGCCTAATGGGCCATATTTTAAAAGAGA
1 TTGGGCCTAATGGGCCATA--TTAAAAGAGA
6948517 TTGGGCCTAATGGGCCATAT
1 TTGGGCCTAATGGGCCATAT
6948537 ATATATAGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
28 17 0.40
29 1 0.02
31 25 0.58
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATTAAAAGAGA
Found at i:6957292 original size:13 final size:13
Alignment explanation
Indices: 6957274--6957298 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6957264 AGGCAGTGTG
6957274 AGGGACACGGGCC
1 AGGGACACGGGCC
6957287 AGGGACACGGGC
1 AGGGACACGGGC
6957299 GTGTGCTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:6959588 original size:20 final size:20
Alignment explanation
Indices: 6959563--6959603 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
6959553 TTCATGGTTA
*
6959563 GTTATCTATAGAGCCTTTGT
1 GTTATCTATAAAGCCTTTGT
*
6959583 GTTATCTATAAATCCTTTGT
1 GTTATCTATAAAGCCTTTGT
6959603 G
1 G
6959604 GTGATTTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.22, C:0.15, G:0.17, T:0.46
Consensus pattern (20 bp):
GTTATCTATAAAGCCTTTGT
Found at i:6959619 original size:25 final size:25
Alignment explanation
Indices: 6959583--6959658 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
6959573 GAGCCTTTGT
* *
6959583 GTTATCTATAAATCCTTTGTGGTGA
1 GTTATCTGTAAAACCTTTGTGGTGA
* * **
6959608 TTTATCTGTAAAGCCTTTGTGGCAA
1 GTTATCTGTAAAACCTTTGTGGTGA
*
6959633 GTTATCTGTAAAACCTTTATGGTGA
1 GTTATCTGTAAAACCTTTGTGGTGA
6959658 G
1 G
6959659 ATCTAGGTAT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (25 bp):
GTTATCTGTAAAACCTTTGTGGTGA
Found at i:6966100 original size:23 final size:24
Alignment explanation
Indices: 6966056--6966111 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
6966046 TGAGTATTTA
*
6966056 AATGTATAT-ATTTAATTGAATTG
1 AATGTATATGATTTAATTAAATTG
*
6966079 AATGTATATGATTTGA-TAAATTG
1 AATGTATATGATTTAATTAAATTG
6966102 AAT-TAT-TGAT
1 AATGTATATGAT
6966112 CATTAAATGC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 4 0.13
22 3 0.10
23 18 0.60
24 5 0.17
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.46
Consensus pattern (24 bp):
AATGTATATGATTTAATTAAATTG
Found at i:6966321 original size:23 final size:21
Alignment explanation
Indices: 6966291--6966366 Score: 73
Period size: 23 Copynumber: 3.4 Consensus size: 21
6966281 AGCTTATTAT
6966291 TTTCAGCTTATTGGAGCTTACCG
1 TTTCAGCTTA-T-GAGCTTACCG
*
6966314 TTTCAGCTTGCATGAGCTTACTG
1 TTTCAGCTT--ATGAGCTTACCG
*
6966337 -TTCAGCTCGATAGAGCTTACCG
1 TTTCAGCT-TAT-GAGCTTACCG
6966359 TTTCAGCT
1 TTTCAGCT
6966367 CAATAAAGCT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
21 2 0.04
22 16 0.36
23 25 0.56
24 1 0.02
25 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (21 bp):
TTTCAGCTTATGAGCTTACCG
Found at i:6966367 original size:23 final size:23
Alignment explanation
Indices: 6966304--6966379 Score: 93
Period size: 23 Copynumber: 3.3 Consensus size: 23
6966294 CAGCTTATTG
*
6966304 GAGCTTACCGTTTCAGCTTGCAT-
1 GAGCTTACCGTTTCAGCTCG-ATA
*
6966327 GAGCTTACTG-TTCAGCTCGATA
1 GAGCTTACCGTTTCAGCTCGATA
*
6966349 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACCGTTTCAGCTCGATA
*
6966372 AAGCTTAC
1 GAGCTTAC
6966380 TGTTCATCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 2 0.04
22 17 0.37
23 27 0.59
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.32
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCGATA
Found at i:6966645 original size:79 final size:79
Alignment explanation
Indices: 6966514--6966672 Score: 282
Period size: 79 Copynumber: 2.0 Consensus size: 79
6966504 GGTTTAGCAC
*
6966514 GCATAATTACTGTTACTGATCATATGAATAAGATATGTTTTCATATAGATGAACTACTGTTTATA
1 GCATAATTACTGTTACTGATCATATGAATAAAATATGTTTTCATATAGATGAACTACTGTTTATA
6966579 CGAATGAACTACTG
66 CGAATGAACTACTG
* *
6966593 GCATAATTCCTGTTACTGATCATATGAATAAAATATGTTTTTATATAGATGAACTACTGTTTATA
1 GCATAATTACTGTTACTGATCATATGAATAAAATATGTTTTCATATAGATGAACTACTGTTTATA
*
6966658 CGAATGCACTACTG
66 CGAATGAACTACTG
6966672 G
1 G
6966673 TTATATGAAT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 76 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (79 bp):
GCATAATTACTGTTACTGATCATATGAATAAAATATGTTTTCATATAGATGAACTACTGTTTATA
CGAATGAACTACTG
Found at i:6966657 original size:20 final size:20
Alignment explanation
Indices: 6966632--6966702 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
6966622 AAAATATGTT
6966632 TTTATAT-AGATGAACTACTG
1 TTTATATGA-ATGAACTACTG
* *
6966652 TTTATACGAATGCACTACTG
1 TTTATATGAATGAACTACTG
* * *
6966672 GTTATATGAATGAATTACTA
1 TTTATATGAATGAACTACTG
*
6966692 TTTATACGAAT
1 TTTATATGAAT
6966703 AGAAATGAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 40 0.98
21 1 0.02
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.39
Consensus pattern (20 bp):
TTTATATGAATGAACTACTG
Found at i:6967818 original size:30 final size:30
Alignment explanation
Indices: 6967784--6967842 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
6967774 ACGGCTTAGA
*
6967784 CACACGGGTGTGTCTATTAGCCGTGTGTGG
1 CACACGGGTGTCTCTATTAGCCGTGTGTGG
*
6967814 CACACGGGTGTCTCTATTGGCCGTGTGTG
1 CACACGGGTGTCTCTATTAGCCGTGTGTG
6967843 TATGTATGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.12, C:0.22, G:0.36, T:0.31
Consensus pattern (30 bp):
CACACGGGTGTCTCTATTAGCCGTGTGTGG
Found at i:6968764 original size:23 final size:23
Alignment explanation
Indices: 6968721--6968764 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
6968711 CATCATAATA
*
6968721 TCATCTATTTCATATCACAAAAC
1 TCATCTATATCATATCACAAAAC
*
6968744 TCATC-ATATCATCATCTCAAA
1 TCATCTATATCAT-ATCACAAA
6968765 CCAAACCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.34
Consensus pattern (23 bp):
TCATCTATATCATATCACAAAAC
Found at i:6973404 original size:46 final size:47
Alignment explanation
Indices: 6973346--6973520 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 47
6973336 TGTAACCCGC
* *
6973346 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGGCT-TTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCTATTCGCAT
* *
6973392 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-CTA-TTCGCAT
* *
6973442 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GGATATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCTATTCGCAT
* *
6973485 CCATAAGTGAACTCGGACTCAACTCAACGAATTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
6973521 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 2 0.02
46 59 0.55
47 27 0.25
48 3 0.03
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCTATTCGCAT
Found at i:6973466 original size:93 final size:93
Alignment explanation
Indices: 6973353--6973524 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
6973343 CGCCCATAAG
*
6973353 CGAACTCGGACTCAACTCAACAAGCTCGGGCT-TTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACAAGCTC-GGATATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
6973417 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAATTCGGATGCCTAGTTACATCTCA
* *
6973446 CGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGATATTCGCATCCATAAGTGAACTCGGACTCAACTCA
6973511 ACGAATTCGGATGC
66 ACGAATTCGGATGC
6973525 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 3 0.04
93 71 0.96
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCGGATATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAATTCGGATGCCTAGTTACATCTCA
Found at i:6973540 original size:46 final size:46
Alignment explanation
Indices: 6973349--6973540 Score: 157
Period size: 46 Copynumber: 4.2 Consensus size: 46
6973339 AACCCGCCCA
* * * *
6973349 TAAGCGAACTCGGACTCAACTCAACAAGCTCGG--GCTTTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC--TCAACATCC
6973394 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT-C
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACATCC
* * ** *
6973443 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATATTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC
*
6973487 ATAAGTGAACTCGGACTCAACTCAACGAATTCGGATGCTCAACCATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CATCC
6973535 T-AGTGA
1 TAAGTGA
6973541 CATGTCACTT
Statistics
Matches: 118, Mismatches: 15, Indels: 26
0.74 0.09 0.16
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 3 0.03
46 66 0.56
47 31 0.26
48 10 0.08
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC
Found at i:6981017 original size:89 final size:91
Alignment explanation
Indices: 6980910--6981077 Score: 304
Period size: 89 Copynumber: 1.9 Consensus size: 91
6980900 CGCCCATAAG
*
6980910 CGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCATAAGTGAACTC-GACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
6980973 ACGAGTTCGGATGCCTAGTTATCTCA
66 ACGAGTTCGGATGCCTAGTTATCTCA
*
6980999 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
6981064 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
6981078 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
89 28 0.37
90 22 0.29
91 25 0.33
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (91 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTATCTCA
Found at i:6981093 original size:46 final size:45
Alignment explanation
Indices: 6980906--6981086 Score: 142
Period size: 45 Copynumber: 4.0 Consensus size: 45
6980896 AACCCGCCCA
* * * * *
6980906 TAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCAT-C
**
6980950 ATAAGTGAACTC-GACTCAACTCAACGAGTTCGGATGC-CTAGTTATC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A-CCATC
* * * *
6980996 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCA-CCATC
6981041 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATC
6981087 CTAGTGACAT
Statistics
Matches: 108, Mismatches: 16, Indels: 23
0.73 0.11 0.16
Matches are distributed among these distances:
44 34 0.31
45 37 0.34
46 29 0.27
47 7 0.06
48 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATC
Found at i:6983559 original size:25 final size:26
Alignment explanation
Indices: 6983489--6983561 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
6983479 AGCGAGCACT
*
6983489 ATCGGGAAGCTCACAAAGAGCCAATTTA
1 ATCGGGAAGCTCA-TAAGAGCC-ATTTA
6983517 A-CGGGAAGCTCATGAAGAGCC-TTTA
1 ATCGGGAAGCTCAT-AAGAGCCATTTA
*
6983542 ATCGGGATGCTCATAAGAGC
1 ATCGGGAAGCTCATAAGAGC
6983562 TAAGGTGTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
25 11 0.27
26 11 0.27
27 18 0.44
28 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (26 bp):
ATCGGGAAGCTCATAAGAGCCATTTA
Found at i:6985421 original size:21 final size:21
Alignment explanation
Indices: 6985356--6985422 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
6985346 GTGTGTCTTG
6985356 ATTAATTTAAG-TAATTTAAA-
1 ATTAATTTAAGTTAA-TTAAAT
*
6985376 ATTTTATTTAA-TTAA--AACAT
1 A-TTAATTTAAGTTAATTAA-AT
6985396 GATTAATTTAAGTTAATTAAAT
1 -ATTAATTTAAGTTAATTAAAT
6985418 ATTAA
1 ATTAA
6985423 CCTAGTTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 15
0.69 0.04 0.28
Matches are distributed among these distances:
18 2 0.05
19 1 0.03
20 9 0.24
21 21 0.57
22 2 0.05
23 2 0.05
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.46
Consensus pattern (21 bp):
ATTAATTTAAGTTAATTAAAT
Found at i:6994783 original size:43 final size:42
Alignment explanation
Indices: 6994736--6994874 Score: 124
Period size: 44 Copynumber: 3.2 Consensus size: 42
6994726 TCCCGAACGT
* *
6994736 GGTCTTACATGTAATCAAATATCGATGCC-ACTATCCCAGATAG
1 GGTCTTACACGAAATCAAATA-CGATGCCAAC-ATCCCAGATAG
* *
6994779 GGTCTTACACGAAATCAAGTACGATGCCAACATCCCAGA-CG
1 GGTCTTACACGAAATCAAATACGATGCCAACATCCCAGATAG
* * *
6994820 TGGTTTTACACGTAAATACCAAAT-CAATGCCAACATCCCAGA-CG
1 -GGTCTTACACG-AAAT--CAAATACGATGCCAACATCCCAGATAG
6994864 TGGTCTTACAC
1 -GGTCTTACAC
6994875 AATATCACAT
Statistics
Matches: 83, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
41 1 0.01
42 25 0.30
43 24 0.29
44 29 0.35
45 4 0.05
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGCCAACATCCCAGATAG
Found at i:6994816 original size:42 final size:42
Alignment explanation
Indices: 6994717--6994874 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 42
6994707 AGCTTGTACA
* * *
6994717 ATGCCAACGTCCC-GAACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAG-ACGTGGTCTTACACGAAATCAAATA-CG
* *
6994760 ATGCC-ACTATCCCAGATAG-GGTCTTACACGAAATCAAGTACG
1 ATGCCAAC-ATCCCAGA-CGTGGTCTTACACGAAATCAAATACG
* *
6994802 ATGCCAACATCCCAGACGTGGTTTTACACGTAAATACCAAAT-CA
1 ATGCCAACATCCCAGACGTGGTCTTACACG-AAAT--CAAATACG
6994846 ATGCCAACATCCCAGACGTGGTCTTACAC
1 ATGCCAACATCCCAGACGTGGTCTTACAC
6994875 AATATCACAT
Statistics
Matches: 97, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 34 0.35
44 31 0.32
45 4 0.04
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (42 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGAAATCAAATACG
Found at i:6994870 original size:86 final size:85
Alignment explanation
Indices: 6994712--6994874 Score: 190
Period size: 85 Copynumber: 1.9 Consensus size: 85
6994702 CAGAAAGCTT
* * *
6994712 GTACAATGCCAACGTCCCGAACGTGGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGAT
1 GTACAATGCCAACATCCCGAACGTGGTCTTACACGTAATCAAATATCAATGCCACTATCCCAGAT
6994777 AGGGTCTTACACGAAATCAA
66 AGGGTCTTACACGAAATCAA
* * *
6994797 GTACGATGCCAACATCCC-AGACGTGGTTTTACACGTAAATACCAA-ATCAATGCCAAC-ATCCC
1 GTACAATGCCAACATCCCGA-ACGTGGTCTTACACGT-AAT-CAAATATCAATGCC-ACTATCCC
*
6994859 AGA-CGTGGTCTTACAC
62 AGATAG-GGTCTTACAC
6994875 AATATCACAT
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
84 1 0.02
85 31 0.47
86 29 0.44
87 5 0.08
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.23
Consensus pattern (85 bp):
GTACAATGCCAACATCCCGAACGTGGTCTTACACGTAATCAAATATCAATGCCACTATCCCAGAT
AGGGTCTTACACGAAATCAA
Found at i:7002470 original size:43 final size:42
Alignment explanation
Indices: 7002400--7002564 Score: 156
Period size: 43 Copynumber: 3.9 Consensus size: 42
7002390 AGCTTGTACA
* * * *
7002400 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATTG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGAAATCAAATA-CG
* *
7002443 ATGCCACTGTCCCAGACAG-GGTGTTACACGAAATCAAGTACG
1 ATGCCACTGTCCCAGAC-GTGGTCTTACACGAAATCAAATACG
* * *
7002485 ATGCCAAC-GTCCCAGACGTAGTCTTAAATGTAAATACCAAAT-CG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACG-AAAT--CAAATACG
* *
7002529 ATGCCAATGTCCCAGACGTGGTCTTACACGATATCA
1 ATGCCACTGTCCCAGACGTGGTCTTACACGAAATCA
7002565 CATATCAAAA
Statistics
Matches: 99, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
41 3 0.03
42 22 0.22
43 43 0.43
44 27 0.27
45 4 0.04
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACGAAATCAAATACG
Found at i:7007765 original size:32 final size:33
Alignment explanation
Indices: 7007719--7007782 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
7007709 AGTAGCAGGT
7007719 ACTGGGCCGAAG-CCCTTTTCAGA-ATACAGTAA
1 ACTGGGCCGAAGCCCCTTTTCAGATA-ACAGTAA
**
7007751 ACTGGGCCTTAGCCCCTTTTCAGATAACAGTA
1 ACTGGGCCGAAGCCCCTTTTCAGATAACAGTA
7007783 TGGCCCGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 10 0.36
33 17 0.61
34 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (33 bp):
ACTGGGCCGAAGCCCCTTTTCAGATAACAGTAA
Found at i:7018638 original size:23 final size:22
Alignment explanation
Indices: 7018566--7018653 Score: 83
Period size: 21 Copynumber: 4.1 Consensus size: 22
7018556 TACCTGATCA
* *
7018566 GAATATGACACATAA-GTGCCT
1 GAATACGACACACAAGGTGCCT
*
7018587 GAA-ACGACACACGAGGTGCCT
1 GAATACGACACACAAGGTGCCT
* *
7018608 G-CTGCGACACACAAGGTGCCT
1 GAATACGACACACAAGGTGCCT
* *
7018629 GAAATACGACACATAAAGTGCCT
1 G-AATACGACACACAAGGTGCCT
7018652 GA
1 GA
7018654 TCAGTAAAGC
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
20 8 0.15
21 27 0.51
22 1 0.02
23 17 0.32
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.16
Consensus pattern (22 bp):
GAATACGACACACAAGGTGCCT
Found at i:7018650 original size:44 final size:41
Alignment explanation
Indices: 7018572--7018652 Score: 99
Period size: 44 Copynumber: 1.9 Consensus size: 41
7018562 ATCAGAATAT
* * *
7018572 GACACATAAGTGCCTGAAACGACACACGAGGTGCCTGCTGC
1 GACACACAAGTGCCTGAAACGACACACAAAGTGCCTGCTGC
*
7018613 GACACACAAGGTGCCTGAAATACGACACATAAAGTGCCTG
1 GACACACAA-GTGCCTG-AA-ACGACACACAAAGTGCCTG
7018653 ATCAGTAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
41 8 0.24
42 7 0.21
43 2 0.06
44 16 0.48
ACGTcount: A:0.33, C:0.27, G:0.25, T:0.15
Consensus pattern (41 bp):
GACACACAAGTGCCTGAAACGACACACAAAGTGCCTGCTGC
Found at i:7018880 original size:28 final size:29
Alignment explanation
Indices: 7018840--7018913 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 29
7018830 ACCAAAATGT
* * *
7018840 CCAAACACACCAGTATCATGTAATCC-TC
1 CCAAACACACCAGAATAATATAATCCATC
7018868 CCAAACACACCAGAATAATATAATCCATC
1 CCAAACACACCAGAATAATATAATCCATC
*
7018897 CAAAACACACCAGAATA
1 CCAAACACACCAGAATA
7018914 GCACAAAGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 23 0.56
29 18 0.44
ACGTcount: A:0.46, C:0.32, G:0.05, T:0.16
Consensus pattern (29 bp):
CCAAACACACCAGAATAATATAATCCATC
Found at i:7028691 original size:43 final size:42
Alignment explanation
Indices: 7028566--7028722 Score: 122
Period size: 43 Copynumber: 3.7 Consensus size: 42
7028556 TGTGTTTTCG
* *
7028566 TGTAAGACCACGTCTGGGACATTGGCATCGAT-TTGTAATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATC-ATATT-TGA-TTACA
* * * * * *** * *
7028610 TATAAGACCATGTATAGGACATCAACATCATATTTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTACA
*
7028652 TGTGAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATC-ATATTTGATTACA
7028695 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
7028723 TTTAAAAGCT
Statistics
Matches: 85, Mismatches: 22, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
42 22 0.26
43 38 0.45
44 25 0.29
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTACA
Found at i:7031106 original size:2 final size:2
Alignment explanation
Indices: 7031099--7031133 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7031089 ACATACATGA
7031099 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7031134 AAACTTAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7031991 original size:45 final size:46
Alignment explanation
Indices: 7031937--7032051 Score: 135
Period size: 47 Copynumber: 2.5 Consensus size: 46
7031927 TGCACACTTT
* * * *
7031937 TCACAATTGGTCATTGGGCCTTATCACATAT-TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGACCTTATCACATATAACACTTACACAT-TCA
*
7031983 TCACATTGGCCATTCGACCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGACCTTATCACATATA-ACACTTACACATTCA
*
7032030 TCACATTGGCCATTCGATCTTA
1 TCACATTGGCCATTCGACCTTA
7032052 AGCTAGATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
45 23 0.38
46 5 0.08
47 32 0.53
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.34
Consensus pattern (46 bp):
TCACATTGGCCATTCGACCTTATCACATATAACACTTACACATTCA
Found at i:7034678 original size:29 final size:27
Alignment explanation
Indices: 7034644--7034746 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
7034634 TACTCGATCA
*
7034644 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
7034673 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
7034702 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
7034731 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
7034747 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:7042669 original size:29 final size:27
Alignment explanation
Indices: 7042635--7042737 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
7042625 TACTCGATCA
*
7042635 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
7042664 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
7042693 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
7042722 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
7042738 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:7044853 original size:22 final size:20
Alignment explanation
Indices: 7044813--7044853 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
7044803 AGTCCTATTA
*
7044813 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
7044833 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
7044854 TTCACAATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:7048620 original size:13 final size:13
Alignment explanation
Indices: 7048602--7048628 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7048592 AAACTTGCAT
7048602 AACTTCTAAATGC
1 AACTTCTAAATGC
7048615 AACTTCTAAATGC
1 AACTTCTAAATGC
7048628 A
1 A
7048629 TTTCATCATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (13 bp):
AACTTCTAAATGC
Found at i:7062359 original size:18 final size:17
Alignment explanation
Indices: 7062336--7062370 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7062326 CTGACCATTC
7062336 TTCCTTCTCTTCTTTTTT
1 TTCCTTCTCTT-TTTTTT
*
7062354 TTCCTTTTCTTTTTTTT
1 TTCCTTCTCTTTTTTTT
7062371 CTCTCCATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (17 bp):
TTCCTTCTCTTTTTTTT
Found at i:7063475 original size:28 final size:28
Alignment explanation
Indices: 7063443--7063507 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
7063433 ATTTACTAGA
*
7063443 ATACCCCTATGTATGCAAAATTACCA-TT
1 ATACCCCTATGTATGCAAAATGA-CATTT
7063471 ATACCCCTATGTATGCAAAATGACATTT
1 ATACCCCTATGTATGCAAAATGACATTT
7063499 ATACCCCTA
1 ATACCCCTA
7063508 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 2 0.06
28 33 0.94
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACATTT
Found at i:7063656 original size:28 final size:28
Alignment explanation
Indices: 7063623--7063701 Score: 122
Period size: 28 Copynumber: 2.8 Consensus size: 28
7063613 CTTGTGGCTA
*
7063623 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAATTATCTGTTCTGGTGGCAC
7063651 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAATTATCTGTTCTGGTGGCAC
* *
7063679 TGGCACAAAATATCTGTATCTGG
1 TGCCACAAATTATCTGT-TCTGG
7063702 CAGCCATGCT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 42 0.89
29 5 0.11
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.32
Consensus pattern (28 bp):
TGCCACAAATTATCTGTTCTGGTGGCAC
Found at i:7064164 original size:19 final size:19
Alignment explanation
Indices: 7064140--7064178 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7064130 TTTTAATTAT
*
7064140 TTTTATGGTTTTGTTTTAC
1 TTTTATGGTTTTATTTTAC
**
7064159 TTTTATTTTTTTATTTTAC
1 TTTTATGGTTTTATTTTAC
7064178 T
1 T
7064179 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.13, C:0.05, G:0.08, T:0.74
Consensus pattern (19 bp):
TTTTATGGTTTTATTTTAC
Found at i:7071316 original size:28 final size:28
Alignment explanation
Indices: 7071253--7071317 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
7071243 ATTTACTAGA
* *
7071253 ATACCCCAATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
7071281 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
7071309 ATACCCCTA
1 ATACCCCTA
7071318 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.35, C:0.28, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:7071464 original size:28 final size:28
Alignment explanation
Indices: 7071423--7071505 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
7071413 AGGAAGCGTC
7071423 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
* *
7071451 CTGGTGGCCCTGCCACAAATTATCTATT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
7071479 CTGGTGGCACTGCCACAAAATATCTGT
1 CTGGTGGCACTGCCACAAATTATCTGT
7071506 ATATGGTGAC
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.31
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:7072000 original size:19 final size:19
Alignment explanation
Indices: 7071976--7072014 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7071966 TTTTAATTAT
* *
7071976 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
7071995 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
7072014 T
1 T
7072015 ATGATGATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:7082503 original size:24 final size:24
Alignment explanation
Indices: 7082456--7082524 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 24
7082446 CAGCTCGAAT
7082456 GAGCTTACTGATATATCAGCTTGTAA
1 GAGCTTACTG-T-TATCAGCTTGTAA
* **
7082482 GAGCTTACTGTTTTCAGCTTGTTG
1 GAGCTTACTGTTATCAGCTTGTAA
*
7082506 GAGCTTACTGTTCTCAGCT
1 GAGCTTACTGTTATCAGCT
7082525 CGTATACTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 28 0.72
25 1 0.03
26 10 0.26
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.39
Consensus pattern (24 bp):
GAGCTTACTGTTATCAGCTTGTAA
Found at i:7098621 original size:40 final size:40
Alignment explanation
Indices: 7098566--7098863 Score: 431
Period size: 40 Copynumber: 7.5 Consensus size: 40
7098556 TGGATGATAA
* * * *
7098566 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-C
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
7098606 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
7098646 TCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
7098686 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
7098726 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
7098766 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTCTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
7098806 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
7098846 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
7098864 TACTTGGCTT
Statistics
Matches: 237, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 16 0.07
40 221 0.93
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:7106863 original size:40 final size:40
Alignment explanation
Indices: 7106806--7107063 Score: 319
Period size: 40 Copynumber: 6.5 Consensus size: 40
7106796 TGGATGATAA
* * *
7106806 CCGGGCTAAGTCTCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-TAT
*
7106846 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
7106886 CCGGGCTAAGTCCCGAAGGCATTTGT-CTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
7106926 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
** * *
7106966 TTGGGCTAAGTCCCGAAGGCATTGGTGCCAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* * * *
7107006 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
* *
7107046 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
7107064 TACTTGGCTT
Statistics
Matches: 195, Mismatches: 18, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
39 17 0.09
40 178 0.91
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:7111076 original size:57 final size:58
Alignment explanation
Indices: 7110997--7111121 Score: 137
Period size: 57 Copynumber: 2.2 Consensus size: 58
7110987 TACCAGTCTA
** * * * **
7110997 GGCTAAATCCTTTTTATGACATATGCTCTA-AGGAACTT-GATCTGGATTACCCATCCG
1 GGCTAAATCCAATATATAACATATGCTCGAGAGG-ACTTAGATCAAGATTACCCATCCG
* *
7111054 GGCTAAATCCAATATATAACATATGCTCGAGAGGACTTATATCAAGATTACCCATCTG
1 GGCTAAATCCAATATATAACATATGCTCGAGAGGACTTAGATCAAGATTACCCATCCG
*
7111112 GGTTAAATCC
1 GGCTAAATCC
7111122 TTTCTGTAAT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
57 29 0.52
58 27 0.48
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (58 bp):
GGCTAAATCCAATATATAACATATGCTCGAGAGGACTTAGATCAAGATTACCCATCCG
Found at i:7117336 original size:24 final size:24
Alignment explanation
Indices: 7117305--7117354 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
7117295 GCCATAAAAT
7117305 TTTATTCATATTTCAAAACGTTCA
1 TTTATTCATATTTCAAAACGTTCA
7117329 TTTATTCATATTTCAAAACGTTCA
1 TTTATTCATATTTCAAAACGTTCA
7117353 TT
1 TT
7117355 CTCTTACACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.32, C:0.16, G:0.04, T:0.48
Consensus pattern (24 bp):
TTTATTCATATTTCAAAACGTTCA
Found at i:7119963 original size:30 final size:30
Alignment explanation
Indices: 7119929--7119989 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
7119919 TCCTTAACTC
7119929 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
7119959 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
7119989 A
1 A
7119990 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:7123728 original size:19 final size:19
Alignment explanation
Indices: 7123681--7123721 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
7123671 ATGTGCACTC
7123681 AGCACTATACATGTGACCT
1 AGCACTATACATGTGACCT
7123700 AGCACTATACATGTGACCT
1 AGCACTATACATGTGACCT
7123719 AGC
1 AGC
7123722 TACATACCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (19 bp):
AGCACTATACATGTGACCT
Found at i:7130464 original size:12 final size:12
Alignment explanation
Indices: 7130449--7130491 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
7130439 GAGGAGATAA
7130449 AGGAGGATTTTT
1 AGGAGGATTTTT
** **
7130461 AGGAGGAGATAA
1 AGGAGGATTTTT
7130473 AGGAGGATTTTT
1 AGGAGGATTTTT
7130485 AGGAGGA
1 AGGAGGA
7130492 GATTGTGGAG
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.40, T:0.26
Consensus pattern (12 bp):
AGGAGGATTTTT
Found at i:7130503 original size:24 final size:24
Alignment explanation
Indices: 7130439--7130494 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
7130429 AAATTCAGTA
7130439 GAGGAGATAAAGGAGGATTTTTAG
1 GAGGAGATAAAGGAGGATTTTTAG
7130463 GAGGAGATAAAGGAGGATTTTTAG
1 GAGGAGATAAAGGAGGATTTTTAG
7130487 GAGGAGAT
1 GAGGAGAT
7130495 TGTGGAGGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.38, C:0.00, G:0.39, T:0.23
Consensus pattern (24 bp):
GAGGAGATAAAGGAGGATTTTTAG
Found at i:7133747 original size:27 final size:26
Alignment explanation
Indices: 7133701--7134032 Score: 207
Period size: 27 Copynumber: 12.5 Consensus size: 26
7133691 AGACCCTCAA
*
7133701 TTTGT-AAATTACTGATATACCCTAAG
1 TTTGTAAAATTACTGAAATACCCT-AG
*
7133727 GTTGTAAAATTACTGAAATACCTCT-G
1 TTTGTAAAATTACTGAAATACC-CTAG
** *
7133753 ATTTGGGAAATTACTGAAATACCCTCG
1 -TTTGTAAAATTACTGAAATACCCTAG
* *
7133780 ATTTGTGAAATTA-TAGAAATA-CC-AA
1 -TTTGTAAAATTACT-GAAATACCCTAG
* * **
7133805 CTTGTAAAATTATTGAAATACCCGCG
1 TTTGTAAAATTACTGAAATACCCTAG
* ** * *
7133831 ATTTGTAAAATCACCAAAATACTCTCAA
1 -TTTGTAAAATTACTGAAATACCCT-AG
* *
7133859 ATTGTAAAATTA-TCGAAATATCCCCAG
1 TTTGTAAAATTACT-GAAATA-CCCTAG
7133886 TTTGTAAAATTACTGAAATACCCTTTA-
1 TTTGTAAAATTACTGAAATACCC--TAG
*
7133913 TTTGTAAAATTA-TCAAAATACCCTCAG
1 TTTGTAAAATTACT-GAAATACCCT-AG
* * * *
7133940 ATTGTAAAATTACCGAAATACTCTCG
1 TTTGTAAAATTACTGAAATACCCTAG
*
7133966 ATTTGTAAAATCACTGAAATACCCTAGG
1 -TTTGTAAAATTACTGAAATACCCTA-G
* *
7133994 ATTATAAAATTA-TCGAAATA-CCTCAG
1 TTTGTAAAATTACT-GAAATACCCT-AG
7134020 TTTGTAAAATTAC
1 TTTGTAAAATTAC
7134033 CGATGTAATA
Statistics
Matches: 236, Mismatches: 46, Indels: 47
0.72 0.14 0.14
Matches are distributed among these distances:
24 16 0.07
25 4 0.02
26 31 0.13
27 178 0.75
28 7 0.03
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (26 bp):
TTTGTAAAATTACTGAAATACCCTAG
Found at i:7133791 original size:54 final size:53
Alignment explanation
Indices: 7133699--7134032 Score: 244
Period size: 54 Copynumber: 6.3 Consensus size: 53
7133689 TAAGACCCTC
* * *
7133699 AATTTGT-AAATTACTGATATACCCT-AAGGTTGTAAAATTACTGAAATACCTCT
1 AATTTGTAAAATTACTGAAATACCCTCGA-TTTGTAAAATTACTGAAATA-CTCT
* ** *
7133752 GATTTGGGAAATTACTGAAATACCCTCGATTTGTGAAATTA-TAGAAATAC-C-
1 AATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACT-GAAATACTCT
* * * * **
7133803 AACTTGTAAAATTATTGAAATACCCGCGATTTGTAAAATCACCAAAATACTCT
1 AATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACTCT
* *
7133856 CAAATTGTAAAATTA-TCGAAATATCCC-C-AGTTTGTAAAATTACTGAAATACCCTT
1 -AATTTGTAAAATTACT-GAAATA-CCCTCGA-TTTGTAAAATTACTGAAATACTC-T
* * *
7133911 TATTTGTAAAATTA-TCAAAATACCCTCAGA-TTGTAAAATTACCGAAATACTCT
1 AATTTGTAAAATTACT-GAAATACCCTC-GATTTGTAAAATTACTGAAATACTCT
* * * *
7133964 CGATTTGTAAAATCACTGAAATACCCTAGGA-TTATAAAATTA-TCGAAATAC-CT
1 -AATTTGTAAAATTACTGAAATACCCT-CGATTTGTAAAATTACT-GAAATACTCT
*
7134017 CAGTTTGTAAAATTAC
1 -AATTTGTAAAATTAC
7134033 CGATGTAATA
Statistics
Matches: 228, Mismatches: 35, Indels: 36
0.76 0.12 0.12
Matches are distributed among these distances:
51 39 0.17
52 2 0.01
53 28 0.12
54 152 0.67
55 6 0.03
56 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (53 bp):
AATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACTCT
Found at i:7133834 original size:78 final size:78
Alignment explanation
Indices: 7133693--7133989 Score: 231
Period size: 81 Copynumber: 3.7 Consensus size: 78
7133683 GGTCGTTAAG
* * * *
7133693 ACCCTCAATTTGT-AAATTACT-GATATACCCTAAGGTTGTAAAATTACTGAAATACCTCTGATT
1 ACCCTCAAATTGTAAAATTA-TAGAAATACCC-AA-CTTGTAAAATTACTGAAATACC-CCGATT
* * **
7133756 TGGGAAATTACTGAAAT
62 TGGAAAATCACCAAAAT
* * * * *
7133773 ACCCTCGATTTGTGAAATTATAGAAATA-CCAACTTGTAAAATTATTGAAATACCCGCGATTTGT
1 ACCCTCAAATTGTAAAATTATAGAAATACCCAACTTGTAAAATTACTGAAATACCC-CGATTTGG
7133837 AAAATCACCAAAAT
65 AAAATCACCAAAAT
* * ** **
7133851 ACTCTCAAATTGTAAAATTATCGAAATATCCCCAGTTTGTAAAATTACTGAAATACCCTTTATTT
1 ACCCTCAAATTGTAAAATTATAGAAATA--CCCAACTTGTAAAATTACTGAAATACCC-CGATTT
* * *
7133916 GTAAAATTATCAAAAT
63 GGAAAATCACCAAAAT
* ** * * *
7133932 ACCCTCAGATTGTAAAATTACCGAAATACTCTCGATTTGTAAAATCACTGAAATACCC
1 ACCCTCAAATTGTAAAATTATAGAAATAC-C-CAACTTGTAAAATTACTGAAATACCC
7133990 TAGGATTATA
Statistics
Matches: 180, Mismatches: 29, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
77 1 0.01
78 59 0.33
79 3 0.02
80 16 0.09
81 101 0.56
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (78 bp):
ACCCTCAAATTGTAAAATTATAGAAATACCCAACTTGTAAAATTACTGAAATACCCCGATTTGGA
AAATCACCAAAAT
Found at i:7133916 original size:81 final size:79
Alignment explanation
Indices: 7133728--7134031 Score: 283
Period size: 81 Copynumber: 3.8 Consensus size: 79
7133718 TACCCTAAGG
** ** * * *
7133728 TTGTAAAATTACTGAAATA-CCTCTGATTTGGGAAATTACTGAAATACCCTCGATTTGTGAAATT
1 TTGTAAAATTACTGAAATACCCT-TGATTTGTAAAATTACCAAAATACCCTCAAATTGTAAAATT
* * *
7133792 ATAGAAATA-CCAAC
65 ATCGAAATATCCCAT
* ** * *
7133806 TTGTAAAATTATTGAAATACCCGCGATTTGTAAAATCACCAAAATACTCTCAAATTGTAAAATTA
1 TTGTAAAATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCAAATTGTAAAATTA
7133871 TCGAAATATCCCCAGT
66 TCGAAATAT-CCCA-T
* * *
7133887 TTGTAAAATTACTGAAATACCCTTTATTTGTAAAATTATCAAAATACCCTCAGATTGTAAAATTA
1 TTGTAAAATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCAAATTGTAAAATTA
* *
7133952 CCGAAATACTCTCGAT
66 TCGAAATA-TC-CCAT
* * * * * **
7133968 TTGTAAAATCACTGAAATACCCTAGGA-TTATAAAATTATCGAAATA-CCTCAGTTTGTAAAATT
1 TTGTAAAATTACTGAAATACCCT-TGATTTGTAAAATTACCAAAATACCCTCAAATTGTAAAATT
7134031 A
65 A
7134032 CCGATGTAAT
Statistics
Matches: 188, Mismatches: 31, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
78 57 0.30
79 2 0.01
80 20 0.11
81 105 0.56
82 4 0.02
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (79 bp):
TTGTAAAATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCAAATTGTAAAATTA
TCGAAATATCCCAT
Found at i:7135621 original size:30 final size:29
Alignment explanation
Indices: 7135587--7135653 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
7135577 TATGTTATCT
7135587 TATACATA-TAAT-TTCTTCTAAATCTATTCA
1 TATACATATTAATGTT-TT-TAAATCTATT-A
*
7135617 TATACATATTCATGTTTTTAAATCTATTA
1 TATACATATTAATGTTTTTAAATCTATTA
7135646 TATACATA
1 TATACATA
7135654 ATACATGATA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
29 9 0.26
30 18 0.53
31 5 0.15
32 2 0.06
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.48
Consensus pattern (29 bp):
TATACATATTAATGTTTTTAAATCTATTA
Found at i:7139372 original size:16 final size:16
Alignment explanation
Indices: 7139351--7139384 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7139341 ATGAAAAATC
7139351 AGATCCTACTTTACGA
1 AGATCCTACTTTACGA
7139367 AGATCCTACTTTACGA
1 AGATCCTACTTTACGA
7139383 AG
1 AG
7139385 GGTCAATGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (16 bp):
AGATCCTACTTTACGA
Found at i:7141646 original size:64 final size:64
Alignment explanation
Indices: 7141577--7141896 Score: 516
Period size: 64 Copynumber: 5.0 Consensus size: 64
7141567 TCATTCATAA
* *
7141577 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAACGTCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
7141641 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
7141705 CACATTTAGTTAGGAGCATTTGATTCATTTCGATTATAGCATCCTAATTATTTGACATCAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
7141769 CACATCTAGTTAGGAGCATTTGATTCATGTT-GAACGTAGCATCCTAATTATTTGACATAAACAT
1 CACATCTAGTTAGGAGCATTTGATTCAT-TTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * * *
7141833 CACATCTAGCTAGGAGTATTTGATTCATTTTGATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
7141897 GATACATGAA
Statistics
Matches: 237, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
63 2 0.01
64 233 0.98
65 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:7142328 original size:177 final size:177
Alignment explanation
Indices: 7142095--7142660 Score: 792
Period size: 177 Copynumber: 3.2 Consensus size: 177
7142085 AAAGACGTCA
* ** *
7142095 AATCTTATCTCCATGTATCGGCAGTGGAGCAGGGTTTAGCTACTAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
* * * *
7142160 CAAGGGAGCAGGTTGGCAATTGTAGTTTTATCTTCCTGATGTAGCAAGGAAGCAGACTGAAGATT
66 CAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
* *
7142225 GAAGATCTTATCTCCCTAAGCAGTGGTGGAGCAGATCAAAGATGGTG
131 GAAGATCTTATCTCCCTAAGCAGTGGTGGAGCAGATCGAAGATGGCG
** * *
7142272 AATCTTATCTCCATGTATCAACAATAGAGTAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
* * ** * *
7142337 CAATAGAGAAGGTTGATGATTGTAGTCTTATTTTCCTGAGGTAGCAAGGAAGTAGACTGAAGATT
66 CAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
** * *
7142402 GAAGATCTTATCTCTTTAGGCAGTGGTGGAGTAGATCGAAGATGGCG
131 GAAGATCTTATCTCCCTAAGCAGTGGTGGAGCAGATCGAAGATGGCG
* * * * * *
7142449 AATATTATCTCCATGTATCGGTAATGGAGCAGATTTAAGCCACCAACCTTATCTCTCTGAGGTAA
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
*
7142514 CAAGAGAGCACGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA-TGAAGATT
66 CAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
* * * * * *
7142578 GAAGATTTTATCTCCCCATGCAGTTGTGGAGCAGATCGAGGATGGCA
131 GAAGATCTTATCTCCCTAAGCAGTGGTGGAGCAGATCGAAGATGGCG
7142625 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
7142661 AAGTCACCAG
Statistics
Matches: 337, Mismatches: 52, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
176 80 0.24
177 257 0.76
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (177 bp):
AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
CAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
GAAGATCTTATCTCCCTAAGCAGTGGTGGAGCAGATCGAAGATGGCG
Found at i:7142818 original size:41 final size:40
Alignment explanation
Indices: 7142786--7143709 Score: 941
Period size: 41 Copynumber: 22.6 Consensus size: 40
7142776 TAGAGGTGGT
* * *
7142786 TTTTGTTAAAATGCCGCTAAAAATAGAGCAATAGCGGCAC
1 TTTTGGTAAAACGCCGCTAAAAATAGAGCAATAGCGGCGC
* * * *
7142826 TTTTGGTAAAACGCCGGTAAAAGTCAGAGCAATAGTGGTGC
1 TTTTGGTAAAACGCCGCTAAAAAT-AGAGCAATAGCGGCGC
* *
7142867 TTTTGGTAAAACGCCACTAAAAGTCAGAGCAATAGCGGCGC
1 TTTTGGTAAAACGCCGCTAAAAAT-AGAGCAATAGCGGCGC
* *
7142908 TTTTGGTAAAACGCCGCTAAAAACCAGAGCAATAGCGGCGT
1 TTTTGGTAAAACGCCGCTAAAAA-TAGAGCAATAGCGGCGC
* * *
7142949 TTTTGGTAAAACGCCGCTAAAAGTCGGAGCAATAGTGGCGC
1 TTTTGGTAAAACGCCGCTAAAAAT-AGAGCAATAGCGGCGC
* * *
7142990 TTTTGGTAAAACGCTGCTAAAAGTCAGAGCAATAACGGCGC
1 TTTTGGTAAAACGCCGCTAAAAAT-AGAGCAATAGCGGCGC
* * * * *
7143031 TTTTGGTAGAACGCCGCTAAAAACCAAAGCAATAGCAGCCC
1 TTTTGGTAAAACGCCGCTAAAAA-TAGAGCAATAGCGGCGC
* * * *
7143072 TTTTGGTAAAATGTCGCTAAAATTCGGAGCAATAGCGGCGC
1 TTTTGGTAAAACGCCGCTAAAAAT-AGAGCAATAGCGGCGC
*
7143113 TTTTGGTAAAACGCCGCTAAAAAACCAGAGCAATAGCGGCGC
1 TTTTGGTAAAACGCCGCT-AAAAA-TAGAGCAATAGCGGCGC
* *
7143155 TTTAGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGC
1 TTTTGGTAAAACGCCGCTAAAAAT-AGAGCAATAGCGGCGC
* * * *
7143196 TTTTGGTAAAACGTCGCTAAAAGTTGGAGCAATAGCGGTGC
1 TTTTGGTAAAACGCCGCTAAAA-ATAGAGCAATAGCGGCGC
* * * *
7143237 TTTTGGTAATACGCCGCTAAAAACCAAAGCAATAGCGGTGC
1 TTTTGGTAAAACGCCGCTAAAAA-TAGAGCAATAGCGGCGC
* * *
7143278 TTTTGGTAAAACGCCGCTAAAAGTCGGAGCAATAACGGCGC
1 TTTTGGTAAAACGCCGCTAAAAAT-AGAGCAATAGCGGCGC
* *
7143319 TTTTGGTAAAACGTCGCTAAAAACCAGAGCAATAGCGGCGC
1 TTTTGGTAAAACGCCGCTAAAAA-TAGAGCAATAGCGGCGC
*
7143360 TTTTGGTAAAACGCCGCTAAAAGTTAGAGCAATAGCGGCG-
1 TTTTGGTAAAACGCCGCTAAAA-ATAGAGCAATAGCGGCGC
*** * * * * *
7143400 TTTTACCAAAAGCGTCGCTAAAAGTTGGAGCAATAGTGGTGC
1 TTTTGGTAAAA-CGCCGCTAAAA-ATAGAGCAATAGCGGCGC
* * * *
7143442 TTTTGGTAATACGCCGCTAAAAACCAAAGCAATAGCGGCGT
1 TTTTGGTAAAACGCCGCTAAAAA-TAGAGCAATAGCGGCGC
* *
7143483 TTTTGGTAAAACGCCGCTAAAAGTCGGAGCAATAGCGGCGC
1 TTTTGGTAAAACGCCGCTAAAAAT-AGAGCAATAGCGGCGC
** * * * *
7143524 TTTTGGTAAAACGCCATTAAAAACCAGAGCATTAGCTGTGC
1 TTTTGGTAAAACGCCGCTAAAAA-TAGAGCAATAGCGGCGC
* * **
7143565 TTTTGGTAAAACGCCGCTAAAAACCAGAGCAATAGTGGATC
1 TTTTGGTAAAACGCCGCTAAAAA-TAGAGCAATAGCGGCGC
* * * * *
7143606 TTTTGGTAAAACGCTGCTAAAAGTCGGAGCAATAACGACGC
1 TTTTGGTAAAACGCCGCTAAAAAT-AGAGCAATAGCGGCGC
* ** * *
7143647 TTTTGGTAAAACGCTGCTAAAAACCGGAGCAATAGCTGCGT
1 TTTTGGTAAAACGCCGCTAAAAA-TAGAGCAATAGCGGCGC
7143688 TTTTGGTAAAACGCCGCTAAAA
1 TTTTGGTAAAACGCCGCTAAAA
7143710 GTCATATAAC
Statistics
Matches: 733, Mismatches: 131, Indels: 39
0.81 0.15 0.04
Matches are distributed among these distances:
40 28 0.04
41 661 0.90
42 44 0.06
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (40 bp):
TTTTGGTAAAACGCCGCTAAAAATAGAGCAATAGCGGCGC
Found at i:7142896 original size:82 final size:82
Alignment explanation
Indices: 7142786--7143713 Score: 1113
Period size: 82 Copynumber: 11.3 Consensus size: 82
7142776 TAGAGGTGGT
* * * * * *
7142786 TTTTGTTAAAATGCCGCTAAAAAT-AGAGCAATAGCGGCACTTTTGGTAAAACGCCGGTAAAAGT
1 TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
* *
7142850 CAGAGCAATAGTGGTGC
66 CAGAGCAATAGCGGCGC
* *
7142867 TTTTGGTAAAACGCCACTAAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
1 TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
*
7142932 CAGAGCAATAGCGGCGT
66 CAGAGCAATAGCGGCGC
* * * *
7142949 TTTTGGTAAAACGCCGCTAAAAGTCGGAGCAATAGTGGCGCTTTTGGTAAAACGCTGCTAAAAGT
1 TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
*
7143014 CAGAGCAATAACGGCGC
66 CAGAGCAATAGCGGCGC
* ** * * * * * *
7143031 TTTTGGTAGAACGCCGCTAAAAACCAAAGCAATAGCAGCCCTTTTGGTAAAATGTCGCTAAAATT
1 TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
*
7143096 CGGAGCAATAGCGGCGC
66 CAGAGCAATAGCGGCGC
** * *
7143113 TTTTGGTAAAACGCCGCTAAAAAACCAGAGCAATAGCGGCGCTTTAGGTAAAACGCCGCTAAAAG
1 TTTTGGTAAAACGCCGCT-AAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
7143178 TCAGAGCAATAGCGGCGC
65 TCAGAGCAATAGCGGCGC
* ** * * *
7143196 TTTTGGTAAAACGTCGCTAAAAGTTGGAGCAATAGCGGTGCTTTTGGTAATACGCCGCTAAAAAC
1 TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
* *
7143261 CAAAGCAATAGCGGTGC
66 CAGAGCAATAGCGGCGC
* * * *
7143278 TTTTGGTAAAACGCCGCTAAAAGTCGGAGCAATAACGGCGCTTTTGGTAAAACGTCGCTAAAAAC
1 TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
7143343 CAGAGCAATAGCGGCGC
66 CAGAGCAATAGCGGCGC
* *** * *
7143360 TTTTGGTAAAACGCCGCTAAAAGTTAGAGCAATAGCGGCG-TTTTACCAAAAGCGTCGCTAAAAG
1 TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAA-CGCCGCTAAAAA
** * *
7143424 TTGGAGCAATAGTGGTGC
65 TCAGAGCAATAGCGGCGC
* ** * * *
7143442 TTTTGGTAATACGCCGCTAAAAACCAAAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAGT
1 TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
*
7143507 CGGAGCAATAGCGGCGC
66 CAGAGCAATAGCGGCGC
** ** * * * *
7143524 TTTTGGTAAAACGCCATTAAAAACCAGAGCATTAGCTGTGCTTTTGGTAAAACGCCGCTAAAAAC
1 TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
* **
7143589 CAGAGCAATAGTGGATC
66 CAGAGCAATAGCGGCGC
* * * * * *
7143606 TTTTGGTAAAACGCTGCTAAAAGTCGGAGCAATAACGACGCTTTTGGTAAAACGCTGCTAAAAAC
1 TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
* * *
7143671 CGGAGCAATAGCTGCGT
66 CAGAGCAATAGCGGCGC
7143688 TTTTGGTAAAACGCCGCTAAAAGTCA
1 TTTTGGTAAAACGCCGCTAAAAGTCA
7143714 TATAACCCCT
Statistics
Matches: 723, Mismatches: 120, Indels: 7
0.85 0.14 0.01
Matches are distributed among these distances:
81 28 0.04
82 614 0.85
83 81 0.11
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (82 bp):
TTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
CAGAGCAATAGCGGCGC
Found at i:7142980 original size:123 final size:123
Alignment explanation
Indices: 7142786--7143713 Score: 1131
Period size: 123 Copynumber: 7.5 Consensus size: 123
7142776 TAGAGGTGGT
* * * * *
7142786 TTTTGTTAAAATGCCGCTAAAAA-TAGAGCAATAGCGGCACTTTTGGTAAAACGCCGGTAAAAGT
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
* * *
7142850 CAGAGCAATAGTGGTGCTTTTGGTAAAACGCCACTAAAAGTCAGAGCAATAGCGGCGC
66 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGC
*
7142908 TTTTGGTAAAACGCCGCTAAAAACCAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAGT
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
* * * *
7142973 CGGAGCAATAGTGGCGCTTTTGGTAAAACGCTGCTAAAAGTCAGAGCAATAACGGCGC
66 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGC
* * * * * * *
7143031 TTTTGGTAGAACGCCGCTAAAAACCAAAGCAATAGCAGCCCTTTTGGTAAAATGTCGCTAAAATT
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
* **
7143096 CGGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAACCAGAGCAATAGCGGCGC
66 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCT-AAAAGTCAGAGCAATAGCGGCGC
* ** *
7143155 TTTAGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTGGTAAAACGTCGCTAAAAGT
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
** * * ** * *
7143220 TGGAGCAATAGCGGTGCTTTTGGTAATACGCCGCTAAAAACCAAAGCAATAGCGGTGC
66 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGC
** * * * **
7143278 TTTTGGTAAAACGCCGCTAAAAGTCGGAGCAATAACGGCGCTTTTGGTAAAACGTCGCTAAAAAC
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
*
7143343 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTTAGAGCAATAGCGGCG-
66 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGC
*** * **** * * * *
7143400 TTTTACCAAAAGCGTCGCTAAAAGTTGGAGCAATAGTGGTGCTTTTGGTAATACGCCGCTAAAAA
1 TTTTGGTAAAA-CGCCGCTAAAAACCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAG
* * * *
7143465 CCAAAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAGTCGGAGCAATAGCGGCGC
65 TCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGC
** * * * **
7143524 TTTTGGTAAAACGCCATTAAAAACCAGAGCATTAGCTGTGCTTTTGGTAAAACGCCGCTAAAAAC
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
* ** * * * *
7143589 CAGAGCAATAGTGGATCTTTTGGTAAAACGCTGCTAAAAGTCGGAGCAATAACGACGC
66 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGC
* * * *
7143647 TTTTGGTAAAACGCTGCTAAAAACCGGAGCAATAGCTGCGTTTTTGGTAAAACGCCGCTAAAAGT
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
7143712 CA
66 CA
7143714 TATAACCCCT
Statistics
Matches: 705, Mismatches: 97, Indels: 7
0.87 0.12 0.01
Matches are distributed among these distances:
122 29 0.04
123 560 0.79
124 116 0.16
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (123 bp):
TTTTGGTAAAACGCCGCTAAAAACCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGC
Found at i:7143800 original size:46 final size:46
Alignment explanation
Indices: 7143714--7143803 Score: 117
Period size: 46 Copynumber: 2.0 Consensus size: 46
7143704 CTAAAAGTCA
* **
7143714 TATAACCCCTAAAACCCTAAACCCCAAAAAATTATGAACACTAATC
1 TATAACCCCTAAAACACTAAACCCCAAAAAATTAAAAACACTAATC
* * **
7143760 TATAACCCCTAAAATACTAAACCCCTAAACCTTAAAAACACTAA
1 TATAACCCCTAAAACACTAAACCCCAAAAAATTAAAAACACTAA
7143804 ACACTAAACT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.49, C:0.30, G:0.01, T:0.20
Consensus pattern (46 bp):
TATAACCCCTAAAACACTAAACCCCAAAAAATTAAAAACACTAATC
Found at i:7144008 original size:15 final size:15
Alignment explanation
Indices: 7143964--7144014 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
7143954 CGGTTTAATA
*
7143964 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* **
7143978 TCTATGGTTTCGGGT
1 TTTATGGTTTAAGGT
7143993 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
7144008 TTAATGG
1 TTTATGG
7144015 CCATGGGTAT
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
14 10 0.36
15 18 0.64
ACGTcount: A:0.20, C:0.04, G:0.29, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:7144616 original size:9 final size:8
Alignment explanation
Indices: 7144589--7144656 Score: 76
Period size: 7 Copynumber: 9.2 Consensus size: 8
7144579 AAATAAACTC
7144589 AAAAA-TT
1 AAAAATTT
7144596 AAAAATTT
1 AAAAATTT
7144604 AAAAATTT
1 AAAAATTT
7144612 AAAAA-TT
1 AAAAATTT
7144619 -AAAATTT
1 AAAAATTT
7144626 -AAAATTT
1 AAAAATTT
*
7144633 AAAAA-TA
1 AAAAATTT
*
7144640 AAAAACTT
1 AAAAATTT
7144648 -AAAATTT
1 AAAAATTT
7144655 AA
1 AA
7144657 TATTTAATAT
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
6 4 0.08
7 28 0.53
8 21 0.40
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (8 bp):
AAAAATTT
Found at i:7144622 original size:22 final size:21
Alignment explanation
Indices: 7144589--7144656 Score: 91
Period size: 22 Copynumber: 3.1 Consensus size: 21
7144579 AAATAAACTC
7144589 AAAAATTAAAAATTTAAAAATTT
1 AAAAATT-AAAATTT-AAAATTT
7144612 AAAAATTAAAATTTAAAATTT
1 AAAAATTAAAATTTAAAATTT
* *
7144633 AAAAATAAAAAACTTAAAATTT
1 AAAAAT-TAAAATTTAAAATTT
7144655 AA
1 AA
7144657 TATTTAATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
21 13 0.31
22 22 0.52
23 7 0.17
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (21 bp):
AAAAATTAAAATTTAAAATTT
Found at i:7144644 original size:29 final size:29
Alignment explanation
Indices: 7144590--7144663 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
7144580 AATAAACTCA
* **
7144590 AAAATTAAAAATTTAAAAATTTAAAAATT
1 AAAATTTAAAATTTAAAAATAAAAAAATT
*
7144619 AAAATTTAAAATTTAAAAATAAAAAACTT
1 AAAATTTAAAATTTAAAAATAAAAAAATT
*
7144648 AAAATTTAATATTTAA
1 AAAATTTAAAATTTAA
7144664 TATTTTAGTC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (29 bp):
AAAATTTAAAATTTAAAAATAAAAAAATT
Found at i:7147586 original size:23 final size:23
Alignment explanation
Indices: 7147556--7147883 Score: 260
Period size: 23 Copynumber: 14.3 Consensus size: 23
7147546 TGGCTGCTGT
*
7147556 TGTTTAAATACTGCAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
*
7147579 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* *
7147602 TGTTTAAATGTTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* * *
7147625 TGTTTAAGTACTGCATATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* *
7147648 TGTTTAACTACTGCAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
** *
7147671 TGTTTAGTTGCTGGAAATTG-AG
1 TGTTTAAATGCTGCAAATTGAAG
* *
7147693 ATGTTT-TATCGCTG-TAATTG-AG
1 -TGTTTAAAT-GCTGCAAATTGAAG
* * **
7147715 TTGTATAAATGTTGTTAATTG-AG
1 -TGTTTAAATGCTGCAAATTGAAG
7147738 ATG-TTAAAGTGCTGCAAATTGAAG
1 -TGTTTAAA-TGCTGCAAATTGAAG
*
7147762 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* * * *
7147785 TGCTTAAATGTTGTAAAATGAAG
1 TGTTTAAATGCTGCAAATTGAAG
*
7147808 TGTTT-TATGTACTGCAAATTGAAG
1 TGTTTAAATG--CTGCAAATTGAAG
** *
7147832 TGTTTAGTTGCTGGAAATTG-AG
1 TGTTTAAATGCTGCAAATTGAAG
*
7147854 ATGTTT-TATCGCTGCAAATTGAAG
1 -TGTTTAAAT-GCTGCAAATTGAAG
7147878 TGTTTA
1 TGTTTA
7147884 GTTGCTGGAA
Statistics
Matches: 250, Mismatches: 41, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
22 27 0.11
23 197 0.79
24 24 0.10
25 2 0.01
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (23 bp):
TGTTTAAATGCTGCAAATTGAAG
Found at i:7147812 original size:114 final size:114
Alignment explanation
Indices: 7147559--7147834 Score: 290
Period size: 114 Copynumber: 2.4 Consensus size: 114
7147549 CTGCTGTTGT
* * * * *
7147559 TTAAATACTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAA
1 TTAAATGCTGGAAAATGAAGTGTTT-TATGCTGTAAATTGAAGTGTATAAATGTTGTAAATTGAA
* * * *
7147624 GTGTTTAAGTACTGCATATTGAAGTGTTTAACTACTGCAAATTGAAGTGT
65 GTGTTAAAGTACTGCAAATTGAAGTGTTTAAATACTGCAAATTGAAGTGC
** * *
7147674 TTAGTTGCTGGAAATTG-AGATGTTTTATCGCTGT-AATTG-AGTTGTATAAATGTTGTTAATTG
1 TTAAATGCTGGAAAATGAAG-TGTTTTAT-GCTGTAAATTGAAG-TGTATAAATGTTGTAAATTG
* * *
7147736 -AGATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGC
63 AAG-TGTTAAAGTACTGCAAATTGAAGTGTTTAAATACTGCAAATTGAAGTGC
* * *
7147788 TTAAATGTTGTAAAATGAAGTGTTTTATGTACTGCAAATTGAAGTGT
1 TTAAATGCTGGAAAATGAAGTGTTTTATG--CTGTAAATTGAAGTGT
7147835 TTAGTTGCTG
Statistics
Matches: 132, Mismatches: 20, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
113 5 0.04
114 89 0.67
115 28 0.21
116 8 0.06
117 2 0.02
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (114 bp):
TTAAATGCTGGAAAATGAAGTGTTTTATGCTGTAAATTGAAGTGTATAAATGTTGTAAATTGAAG
TGTTAAAGTACTGCAAATTGAAGTGTTTAAATACTGCAAATTGAAGTGC
Found at i:7151534 original size:30 final size:30
Alignment explanation
Indices: 7151479--7151609 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
7151469 ATAGTGAATC
*
7151479 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
7151508 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
7151538 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
7151566 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
7151596 CGCACACTTAGTGC
1 CGCACACTTAGTGC
7151610 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:7151589 original size:58 final size:58
Alignment explanation
Indices: 7151478--7151609 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
7151468 TATAGTGAAT
* * * * *
7151478 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
7151537 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
7151595 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
7151610 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:7159492 original size:30 final size:30
Alignment explanation
Indices: 7159437--7159567 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
7159427 ATAGTGAATC
*
7159437 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
7159466 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
7159496 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
7159524 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
7159554 CGCACACTTAGTGC
1 CGCACACTTAGTGC
7159568 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:7159547 original size:58 final size:58
Alignment explanation
Indices: 7159436--7159567 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
7159426 TATAGTGAAT
* * * * *
7159436 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
7159495 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
7159553 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
7159568 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:7163307 original size:27 final size:27
Alignment explanation
Indices: 7163231--7163316 Score: 73
Period size: 27 Copynumber: 3.2 Consensus size: 27
7163221 GCCAACCTAA
* *
7163231 ATATTTACCAATGGCTATGTGCCTATC
1 ATATTTACCAATGGCTATGTGTCGATC
* * * ***
7163258 ATATTTATCGATGACTCCATGTCGATC
1 ATATTTACCAATGGCTATGTGTCGATC
* * *
7163285 ATATTTACCCATGGCTGTGTGTCGATT
1 ATATTTACCAATGGCTATGTGTCGATC
7163312 ATATT
1 ATATT
7163317 ACCGTCACTG
Statistics
Matches: 44, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (27 bp):
ATATTTACCAATGGCTATGTGTCGATC
Found at i:7163639 original size:27 final size:27
Alignment explanation
Indices: 7163572--7163639 Score: 66
Period size: 27 Copynumber: 2.6 Consensus size: 27
7163562 TGTTACTGAG
* * ** *
7163572 ATGGGC-TAGGCCCAATTGATTTTGTT
1 ATGGGCTTTGGCCCAAATGATAATGTA
* *
7163598 ATGGGCTGTGACCCAAATGATAATGTA
1 ATGGGCTTTGGCCCAAATGATAATGTA
7163625 ATGGGCTTTGGCCCA
1 ATGGGCTTTGGCCCA
7163640 CTTATGCTCT
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
26 6 0.19
27 26 0.81
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (27 bp):
ATGGGCTTTGGCCCAAATGATAATGTA
Found at i:7167523 original size:40 final size:39
Alignment explanation
Indices: 7167363--7167525 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
7167353 TGTGAATGAA
*
7167363 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
7167402 TGTGTGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
7167441 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
7167480 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
7167520 TGTGCG
1 TGTGCG
7167526 GGTTACCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:7167541 original size:40 final size:40
Alignment explanation
Indices: 7167380--7167561 Score: 154
Period size: 39 Copynumber: 4.6 Consensus size: 40
7167370 ATTGTGATAT
* * *** *
7167380 CCGGGCTAAG-CCCGAAGGCAATTGTGTGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * * ** *
7167419 CCGGGCTAAG-CCCGAAGGCAATGGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
7167458 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
7167497 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
7167537 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
7167562 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 80 0.64
40 45 0.36
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:7171819 original size:19 final size:19
Alignment explanation
Indices: 7171797--7171835 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7171787 TCATCATCCT
7171797 CTTCACCTAAAATTCCTAA
1 CTTCACCTAAAATTCCTAA
7171816 CTTCACCTAAAATTCCTAA
1 CTTCACCTAAAATTCCTAA
7171835 C
1 C
7171836 CCTAGCCGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.31
Consensus pattern (19 bp):
CTTCACCTAAAATTCCTAA
Found at i:7177741 original size:29 final size:31
Alignment explanation
Indices: 7177693--7177756 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
7177683 TTTATAGTTA
*
7177693 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
*
7177724 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
7177753 TTTA
1 TTTA
7177757 TTTAGTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:7177745 original size:8 final size:8
Alignment explanation
Indices: 7177734--7177758 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7177724 TTTAATAAGA
7177734 TATTTTAT
1 TATTTTAT
7177742 TATTTTAT
1 TATTTTAT
7177750 TATTTTAT
1 TATTTTAT
7177758 T
1 T
7177759 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:7180937 original size:42 final size:42
Alignment explanation
Indices: 7180890--7181093 Score: 255
Period size: 42 Copynumber: 4.9 Consensus size: 42
7180880 TATTCGATGA
* * * * * *
7180890 AGCTTCAGCTATGAAATGGCACTTAGTATGTGAGATCAAGAT
1 AGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATCGAGAT
* *
7180932 AGCTTCGGCTATGCATTGGCACTTAGTGTGCAAGATCTAGAT
1 AGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATCGAGAT
* *
7180974 AGCTTCGGCTATGCATTGGCACTTAGTGTGCAAGATTGAGAT
1 AGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATCGAGAT
* * *
7181016 AGCTTCGGCTATGCATTGGCACTTAGTGTGCGTGATTGAGTT
1 AGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATCGAGAT
* * * *
7181058 AGCTTCAGCTACGTATTGGCACTTAGTGTGTGAGAT
1 AGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGAT
7181094 TTCCAAGTAA
Statistics
Matches: 145, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 145 1.00
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
AGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATCGAGAT
Found at i:7183831 original size:42 final size:41
Alignment explanation
Indices: 7183676--7183865 Score: 125
Period size: 42 Copynumber: 4.6 Consensus size: 41
7183666 ACTCGGTATC
* * * *
7183676 TCACACACTAAGTGCCAATACATAGCTGAAGCTGTTATAATT
1 TCACACACTAAGTGCCAATATATAGCTGAAGCTATTCTAA-A
** * * * ****
7183718 TTGCACACTAAGTGCC-TTACATAGCCGAAGCTATCTCGGTC
1 TCACACACTAAGTGCCAATATATAGCTGAAGCTAT-TCTAAA
* * * * *
7183759 TCTCACACTAGGTACCAA-ATATAGTTGAAGCTATTCCAAA
1 TCACACACTAAGTGCCAATATATAGCTGAAGCTATTCTAAA
*
7183799 TCACACACTAAGTGCCATATATATAGCTGAAGCT-TTCTTGAA
1 TCACACACTAAGTGCCA-ATATATAGCTGAAGCTATTC-TAAA
* *
7183841 TCGCACACTATGTGCCACATATATA
1 TCACACACTAAGTGCCA-ATATATA
7183866 TATCCGAATT
Statistics
Matches: 112, Mismatches: 31, Indels: 10
0.73 0.20 0.07
Matches are distributed among these distances:
40 16 0.14
41 44 0.39
42 52 0.46
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (41 bp):
TCACACACTAAGTGCCAATATATAGCTGAAGCTATTCTAAA
Found at i:7190215 original size:46 final size:45
Alignment explanation
Indices: 7190160--7190333 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
7190150 TATTTGGGCA
7190160 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAA-G
* * *** * *
7190206 TCTGAACTCGTTCAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGC-A-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCCAAG
* * *
7190253 TCCGATCTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAA-G
* * *
7190299 CCCGAGCTCGTTGAGTTGGGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
7190334 TGGCGGGTTA
Statistics
Matches: 100, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 62 0.62
47 29 0.29
48 1 0.01
49 2 0.02
50 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAAG
Found at i:7190270 original size:93 final size:93
Alignment explanation
Indices: 7190156--7190327 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
7190146 AGGATATTTG
* * *
7190156 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAATGTCTGAACTCGTTCAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACGCCCGAACTCGTTCAG
7190221 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * * *
7190249 GGCATCCGATCTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACGCCCGAACTCGTTCAG
*
7190314 TTGGGTCCGAGTTC
66 TTGAGTCCGAGTTC
7190328 ACTTATTGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACGCCCGAACTCGTTCAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:7193301 original size:15 final size:15
Alignment explanation
Indices: 7193281--7193349 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
7193271 GTATCTTGGG
7193281 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
7193296 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
7193311 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
7193326 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
7193341 TTTCTTTAT
1 TTTCTTTAT
7193350 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:7193350 original size:30 final size:30
Alignment explanation
Indices: 7193272--7193359 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
7193262 CATAATATCG
* * * *
7193272 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
7193302 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
7193332 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
7193360 TATTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:7195717 original size:40 final size:39
Alignment explanation
Indices: 7195626--7195733 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 39
7195616 ATCACGATTT
* ** *
7195626 GCACAAATGCCTTCGGGTCTTAGTCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
*
7195666 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTACCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAG-AACCACTA
*
7195706 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
7195734 TTATAATTTC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.05
40 56 0.95
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:7206167 original size:17 final size:17
Alignment explanation
Indices: 7206147--7206248 Score: 53
Period size: 17 Copynumber: 6.0 Consensus size: 17
7206137 TGTTCATGTG
7206147 AAATAATAGTTCATACC
1 AAATAATAGTTCATACC
* * * * *
7206164 AAATGACAGCTCATGCA
1 AAATAATAGTTCATACC
* **
7206181 AAATAATAGTTCTTATG
1 AAATAATAGTTCATACC
7206198 AAAT-ATCAGTTCATACC
1 AAATAAT-AGTTCATACC
* * * * * *
7206215 GACTAAAAGTTAATGCA
1 AAATAATAGTTCATACC
*
7206232 AAATAACAGTTCATACC
1 AAATAATAGTTCATACC
7206249 CCATCATAAC
Statistics
Matches: 56, Mismatches: 27, Indels: 4
0.64 0.31 0.05
Matches are distributed among these distances:
16 2 0.04
17 53 0.95
18 1 0.02
ACGTcount: A:0.44, C:0.18, G:0.11, T:0.27
Consensus pattern (17 bp):
AAATAATAGTTCATACC
Found at i:7206931 original size:36 final size:36
Alignment explanation
Indices: 7206890--7206989 Score: 137
Period size: 36 Copynumber: 2.8 Consensus size: 36
7206880 CACAGTTTGG
* * *
7206890 CAAATTAATACAGTTCTCCATATTAATACAAATCAC
1 CAAATTAACACAATTCACCATATTAATACAAATCAC
*
7206926 CAAATTAACACAATTCACCATCTTAATACAAATCAC
1 CAAATTAACACAATTCACCATATTAATACAAATCAC
* * *
7206962 TAAATTAACACAATTCGCCATAATAATA
1 CAAATTAACACAATTCACCATATTAATA
7206990 TAATTCTTCA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.47, C:0.23, G:0.02, T:0.28
Consensus pattern (36 bp):
CAAATTAACACAATTCACCATATTAATACAAATCAC
Found at i:7206932 original size:18 final size:18
Alignment explanation
Indices: 7206890--7206974 Score: 80
Period size: 18 Copynumber: 4.7 Consensus size: 18
7206880 CACAGTTTGG
** *
7206890 CAAATTAATACAGTTCTC
1 CAAATTAATACAAATCAC
*
7206908 CATATTAATACAAATCAC
1 CAAATTAATACAAATCAC
* *
7206926 CAAATTAACACAATTCAC
1 CAAATTAATACAAATCAC
**
7206944 CATCTTAATACAAATCAC
1 CAAATTAATACAAATCAC
* *
7206962 TAAATTAACACAA
1 CAAATTAATACAA
7206975 TTCGCCATAA
Statistics
Matches: 52, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.48, C:0.24, G:0.01, T:0.27
Consensus pattern (18 bp):
CAAATTAATACAAATCAC
Found at i:7207025 original size:17 final size:18
Alignment explanation
Indices: 7207003--7207040 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
7206993 TTCTTCAAGT
*
7207003 TAACACGGTTCAC-AATA
1 TAACACGGTACACAAATA
7207020 TAACACGGTACACAAATA
1 TAACACGGTACACAAATA
7207038 TAA
1 TAA
7207041 TTGGCTCACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.47, C:0.21, G:0.11, T:0.21
Consensus pattern (18 bp):
TAACACGGTACACAAATA
Found at i:7209206 original size:49 final size:49
Alignment explanation
Indices: 7209119--7209216 Score: 119
Period size: 49 Copynumber: 2.0 Consensus size: 49
7209109 TGTTTAGGTT
*
7209119 TGTAACACCCCTTACCGTAACCGATGCCAGAACAAGGTATGAGGCATTA
1 TGTAACACCCCTTACCGTAACCGATGCCAGAACAAGGTAAGAGGCATTA
* * * *
7209168 TGTAACACCCCTATCCCGTAACCG-TCGCCGGAA-TAGGTAAGGGGCATTA
1 TGTAACACCCCT-TACCGTAACCGAT-GCCAGAACAAGGTAAGAGGCATTA
7209217 CCGGACTTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
49 26 0.62
50 16 0.38
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (49 bp):
TGTAACACCCCTTACCGTAACCGATGCCAGAACAAGGTAAGAGGCATTA
Found at i:7210577 original size:48 final size:48
Alignment explanation
Indices: 7210436--7210583 Score: 242
Period size: 48 Copynumber: 3.1 Consensus size: 48
7210426 ATATATACAC
* **
7210436 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
**
7210484 GGCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
7210532 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
7210580 ATCT
1 ATCT
7210584 TGTACACCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:7212942 original size:23 final size:23
Alignment explanation
Indices: 7212910--7212953 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7212900 AAAATTTCAC
* *
7212910 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
7212933 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
7212954 TATTTTTGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:7214940 original size:43 final size:43
Alignment explanation
Indices: 7214879--7214964 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
7214869 GTTACATAAA
* * *
7214879 TCGCATCCATTATGAACTCAGACCTCTCAACGAGGTTGAATGC
1 TCGCATCCATAATGAACTCAGACCTCTCAACGAGCTCGAATGC
7214922 TCGCATCCATAATGAACTCAGACCTCTCAACGAGCTCGAATGC
1 TCGCATCCATAATGAACTCAGACCTCTCAACGAGCTCGAATGC
7214965 CACATATCTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCAGACCTCTCAACGAGCTCGAATGC
Found at i:7219828 original size:40 final size:39
Alignment explanation
Indices: 7219762--7219912 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
7219752 AAATTGAATG
* * *
7219762 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
7219801 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
7219841 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
7219881 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
7219913 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:7219926 original size:40 final size:39
Alignment explanation
Indices: 7219799--7219928 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
7219789 ATGCTGGAAA
* *
7219799 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
7219839 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
7219879 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
7219919 TTATATCCGG
1 TTATATCCGG
7219929 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:7229465 original size:25 final size:25
Alignment explanation
Indices: 7229437--7229515 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
7229427 ACTCGGCCCT
*
7229437 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
7229462 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
7229484 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
7229509 ATCACAT
1 ATCACAT
7229516 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:7229561 original size:49 final size:47
Alignment explanation
Indices: 7229387--7229783 Score: 560
Period size: 47 Copynumber: 8.3 Consensus size: 47
7229377 CCCTTCGGGA
* * * * * * *
7229387 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
7229434 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7229481 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
7229528 CTTACCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7229577 CTTATCACATATATACACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
7229626 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
7229675 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
7229722 CTTATCACATATATACACTTTCAAATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7229769 CTTATCACATATATA
1 CTTATCACATATATA
7229784 TATCTCATAC
Statistics
Matches: 319, Mismatches: 25, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
47 191 0.60
49 122 0.38
51 6 0.02
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7238308 original size:21 final size:21
Alignment explanation
Indices: 7238284--7238326 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
7238274 TATCCCCACA
7238284 TGGTGTGTTGGTTGGTACGGG
1 TGGTGTGTTGGTTGGTACGGG
*
7238305 TGGTGTGTTGGTTGGTATGGG
1 TGGTGTGTTGGTTGGTACGGG
7238326 T
1 T
7238327 TGGGAATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.05, C:0.02, G:0.51, T:0.42
Consensus pattern (21 bp):
TGGTGTGTTGGTTGGTACGGG
Found at i:7241841 original size:46 final size:44
Alignment explanation
Indices: 7241788--7241953 Score: 183
Period size: 46 Copynumber: 3.6 Consensus size: 44
7241778 CTCGTAGAAA
7241788 ATGCATGTCCCAGACATGTCTTACACTGACTTACGTCTCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGAC-T-CGTCTCGAGGCCG
* *
7241834 ATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACACT-G-ACTCGTCTCGAGGCCG
* * *
7241880 ATGCCATGTCCCAGACATGGTCCTACACTGGCTC-TCAT-GATGTGTCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTGACTCGTC-TCGA-G-GCCG
*
7241927 ATGCATGTCCCAAACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
7241954 AGCTCACAAT
Statistics
Matches: 104, Mismatches: 9, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
45 12 0.12
46 58 0.56
47 23 0.22
48 11 0.11
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (44 bp):
ATGCATGTCCCAGACATGTCTTACACTGACTCGTCTCGAGGCCG
Found at i:7244628 original size:45 final size:45
Alignment explanation
Indices: 7244525--7244616 Score: 141
Period size: 45 Copynumber: 2.1 Consensus size: 45
7244515 AAGTCATCTT
* ** *
7244525 ATTGCACATCTATTTGTTACACTATTTAGAGGCATTCCTTATCCT
1 ATTGCACATTTATTTGTTACACTATTTAGAGGCATTCCACATCCA
7244570 ATTGCACATTTATTTGTTACACTATTTAGAGGCATTCCACA-CCA
1 ATTGCACATTTATTTGTTACACTATTTAGAGGCATTCCACATCCA
7244614 ATT
1 ATT
7244617 TCATGCATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
44 5 0.12
45 38 0.88
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (45 bp):
ATTGCACATTTATTTGTTACACTATTTAGAGGCATTCCACATCCA
Found at i:7247127 original size:40 final size:40
Alignment explanation
Indices: 7247058--7247182 Score: 191
Period size: 40 Copynumber: 3.2 Consensus size: 40
7247048 AACCCAAGTA
* **
7247058 CCTTCGGGATTTAG--CGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
7247096 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
7247136 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
7247176 CCTTCGG
1 CCTTCGG
7247183 ATCTTCGTCC
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 13 0.16
40 67 0.84
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:7256462 original size:48 final size:48
Alignment explanation
Indices: 7256389--7256655 Score: 208
Period size: 48 Copynumber: 5.6 Consensus size: 48
7256379 CAAGGTAGGG
* * * * *
7256389 TGCCAATGCCATATCCTAGAGATGGTCTTGCATGGGACCACATAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGA
* *
7256437 TGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCACACATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT--CACATAACGA
* * * * * * *
7256487 CGCCGAT---A-G-CCCAG-CTATGGTCTTACACGATG-TCTCATTATGA
1 TGCCAATGCCATGTCCCAGAC-ATGGTCTTACATG-GGATCACATAACGA
* * *
7256530 TGCCAATGCCATGTCCCGGACATGGTCTTACATGGGATTACATAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGA
* * **
7256578 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATCACATGTC-A
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGA
* * * *
7256625 CTGCTAAAGCCATATCCCAGATATGGTCTTA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTA
7256656 TACGAGAGTT
Statistics
Matches: 172, Mismatches: 35, Indels: 24
0.74 0.15 0.10
Matches are distributed among these distances:
43 11 0.06
44 1 0.01
45 17 0.10
46 3 0.02
47 4 0.02
48 121 0.70
49 1 0.01
50 14 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGA
Found at i:7257898 original size:30 final size:30
Alignment explanation
Indices: 7257862--7257918 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
7257852 GGGATGTTAC
* *
7257862 AAGGTTGATGGTGGTGTATAATATGGTTTT
1 AAGGTTGATGATGGTGCATAATATGGTTTT
7257892 AAGGTTGATGATGGTGCATAATATGGT
1 AAGGTTGATGATGGTGCATAATATGGT
7257919 GTAGGATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.26, C:0.02, G:0.33, T:0.39
Consensus pattern (30 bp):
AAGGTTGATGATGGTGCATAATATGGTTTT
Found at i:7260463 original size:22 final size:22
Alignment explanation
Indices: 7260435--7260478 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7260425 GCTATGAATC
7260435 GGTATGCTCTCATGAGTTGAAA
1 GGTATGCTCTCATGAGTTGAAA
7260457 GGTATGCTCTCATGAGTTGAAA
1 GGTATGCTCTCATGAGTTGAAA
7260479 ATCGGTAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (22 bp):
GGTATGCTCTCATGAGTTGAAA
Found at i:7260496 original size:25 final size:24
Alignment explanation
Indices: 7260431--7260539 Score: 134
Period size: 25 Copynumber: 4.5 Consensus size: 24
7260421 ACGAGCTATG
* *
7260431 AATCGGTATGCTCTCATGAGTTGA
1 AATCGGTAAGCTCTCATGAGCTGA
* *
7260455 AA--GGTATGCTCTCATGAGTTGAA
1 AATCGGTAAGCTCTCATGAGCTG-A
7260478 AATCGGTAAGCTCAT-ATGAGCTGAA
1 AATCGGTAAGCTC-TCATGAGCTG-A
7260503 AATCGGTAAGCTCTCATGAGCTGA
1 AATCGGTAAGCTCTCATGAGCTGA
7260527 AATCGGTAAGCTC
1 AATCGGTAAGCTC
7260540 ATACAAGCTG
Statistics
Matches: 78, Mismatches: 2, Indels: 10
0.87 0.02 0.11
Matches are distributed among these distances:
22 19 0.24
23 3 0.04
24 17 0.22
25 38 0.49
26 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (24 bp):
AATCGGTAAGCTCTCATGAGCTGA
Found at i:7260548 original size:24 final size:25
Alignment explanation
Indices: 7260474--7260549 Score: 95
Period size: 25 Copynumber: 3.1 Consensus size: 25
7260464 TCTCATGAGT
**
7260474 TGAAAATCGGTAAGCTCATATGAGC
1 TGAAAATCGGTAAGCTCATACAAGC
7260499 TGAAAATCGGTAAGCTC-T-CATGAGC
1 TGAAAATCGGTAAGCTCATACA--AGC
7260524 TG-AAATCGGTAAGCTCATACAAGC
1 TGAAAATCGGTAAGCTCATACAAGC
7260548 TG
1 TG
7260550 TGGTGTGTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
24 20 0.44
25 23 0.51
26 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (25 bp):
TGAAAATCGGTAAGCTCATACAAGC
Found at i:7261960 original size:30 final size:30
Alignment explanation
Indices: 7261926--7261987 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
7261916 AATTCAATCA
7261926 TTTCAACAAGGATTCATCTTTCAAATATGT
1 TTTCAACAAGGATTCATCTTTCAAATATGT
7261956 TTTCAACAAGGATTCATCTTTCAAATATGT
1 TTTCAACAAGGATTCATCTTTCAAATATGT
7261986 TT
1 TT
7261988 ACTTTTAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (30 bp):
TTTCAACAAGGATTCATCTTTCAAATATGT
Found at i:7263510 original size:24 final size:25
Alignment explanation
Indices: 7263474--7263521 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
7263464 CTATAGCTAC
*
7263474 ATATGATAGTTCAAT-AATTAACAA
1 ATATCATAGTTCAATCAATTAACAA
* *
7263498 ATATCATATTTCACTCAATTAACA
1 ATATCATAGTTCAATCAATTAACA
7263522 TTCAAATCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATCATAGTTCAATCAATTAACAA
Found at i:7267860 original size:40 final size:40
Alignment explanation
Indices: 7267811--7267948 Score: 113
Period size: 40 Copynumber: 3.5 Consensus size: 40
7267801 AAATTATAAT
* *
7267811 CGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC-ATC
1 CGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATACTATC
*
7267851 CGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTCTATC
1 CGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATACTATC
* * * * * *
7267891 TGGGCTAAGACCC-AAGGCATTTGTGCAAATCGTAATATC
1 CGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATACTATC
* * *
7267930 CGGGTTAAGTCCCGTAGGC
1 CGGGCTAAGACCCGAAGGC
7267949 CTTGGTGCGG
Statistics
Matches: 79, Mismatches: 14, Indels: 10
0.77 0.14 0.10
Matches are distributed among these distances:
38 1 0.01
39 32 0.41
40 46 0.58
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATACTATC
Done.