Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 250 of 770
Found at i:74963607 original size:40 final size:38
Alignment explanation
Indices: 74963438--74963609 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
74963428 TGAGAAATTG
* *
74963438 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
74963477 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
74963514 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
74963554 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
74963594 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
74963610 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:74966627 original size:39 final size:40
Alignment explanation
Indices: 74966584--74966712 Score: 133
Period size: 40 Copynumber: 3.2 Consensus size: 40
74966574 CGGAATATAA
74966584 CCGGATATAAGCATGTGCACAAATGCCTTC-GGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
74966623 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
74966663 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
74966703 CCGGATATAA
1 CCGGATATAA
74966713 TTTCCAGCAT
Statistics
Matches: 73, Mismatches: 9, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
38 1 0.01
39 24 0.33
40 47 0.64
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:74966727 original size:40 final size:40
Alignment explanation
Indices: 74966600--74966750 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
74966590 ATAAGCATGT
* * *
74966600 GCACAAATGCCTTC-GGTCTTAGCCCGGATAGAA-TGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCG-C-CA
* *
74966639 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
* ***
74966679 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
* * *
74966719 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
74966751 CATTCAATTT
Statistics
Matches: 93, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 13 0.14
40 79 0.85
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
Found at i:74973924 original size:40 final size:39
Alignment explanation
Indices: 74973813--74973964 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 39
74973803 TATAACATGT
* * *
74973813 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACGACTA
*
74973853 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCG-CTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTA
* *** *
74973893 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACGACTA
* * *
74973933 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
74973965 CATTCAATTT
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.02
40 92 0.97
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACGACTA
Found at i:74973947 original size:80 final size:80
Alignment explanation
Indices: 74973813--74973964 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
74973803 TATAACATGT
* *
74973813 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
74973878 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
74973893 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
74973956 CCCGGATAT
64 CCCGGATAT
74973965 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:74981279 original size:80 final size:80
Alignment explanation
Indices: 74981147--74981352 Score: 342
Period size: 80 Copynumber: 2.6 Consensus size: 80
74981137 AACCCGAGTA
* * * *
74981147 CCTTCGGAATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTTGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
74981211 TCACTAGCACAAATG
66 TCACTAGCACAAATG
*
74981226 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
74981291 TCACTAGCACAAATG
66 TCACTAGCACAAATG
* *
74981306 CCTTCGGGACTTAGCCCCGATATAGTAACTAGCACAAATGCCTTCGG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG
74981353 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
79 12 0.10
80 106 0.90
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
TCACTAGCACAAATG
Found at i:74981359 original size:40 final size:40
Alignment explanation
Indices: 74981147--74981352 Score: 297
Period size: 40 Copynumber: 5.2 Consensus size: 40
74981137 AACCCGAGTA
* * * *
74981147 CCTTCGGAATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
74981186 CCTTTGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
74981226 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
74981266 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
74981306 CCTTCGGGACTTAGCCCCGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
74981346 CCTTCGG
1 CCTTCGG
74981353 ATCTTAGTCC
Statistics
Matches: 147, Mismatches: 19, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 11 0.07
40 136 0.93
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:74982891 original size:13 final size:13
Alignment explanation
Indices: 74982873--74982898 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74982863 TTTTTTATTT
74982873 TTAACATAAAATA
1 TTAACATAAAATA
74982886 TTAACATAAAATA
1 TTAACATAAAATA
74982899 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:74983581 original size:11 final size:11
Alignment explanation
Indices: 74983565--74983589 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
74983555 TTATATATAC
74983565 TAATAAAATAA
1 TAATAAAATAA
74983576 TAATAAAATAA
1 TAATAAAATAA
74983587 TAA
1 TAA
74983590 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:74986300 original size:28 final size:28
Alignment explanation
Indices: 74986268--74986328 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
74986258 TTGTTTTCTA
74986268 TCTTTGAGATATAGTTCCTCGACATACT
1 TCTTTGAGATATAGTTCCTCGACATACT
*
74986296 TCTTTGAGATATAGTTCCTCGATATACT
1 TCTTTGAGATATAGTTCCTCGACATACT
74986324 TCTTT
1 TCTTT
74986329 TGAAACTCTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.44
Consensus pattern (28 bp):
TCTTTGAGATATAGTTCCTCGACATACT
Found at i:74994910 original size:34 final size:34
Alignment explanation
Indices: 74994872--74994936 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
74994862 GTTTTACTTA
* *
74994872 GGCCTTAGCCTATATCAGTAACAGTAGCAGTCTG
1 GGCCTGAGCCCATATCAGTAACAGTAGCAGTCTG
* * *
74994906 GGCCTGAGCCCATTTCAGTAATAGTATCAGT
1 GGCCTGAGCCCATATCAGTAACAGTAGCAGT
74994937 GAGGCCGAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (34 bp):
GGCCTGAGCCCATATCAGTAACAGTAGCAGTCTG
Found at i:74996853 original size:27 final size:28
Alignment explanation
Indices: 74996793--74996859 Score: 100
Period size: 27 Copynumber: 2.4 Consensus size: 28
74996783 AAATTTGTAC
*
74996793 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTACGAGTTTGATCATAT
* *
74996821 AACACTAAGTGTACGAG-TTGATTATAT
1 AGCACTAAGTGTACGAGTTTGATCATAT
74996848 AGCACTAAGTGT
1 AGCACTAAGTGT
74996860 GCGGACTCAC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
27 20 0.57
28 15 0.43
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTACGAGTTTGATCATAT
Found at i:74998516 original size:28 final size:27
Alignment explanation
Indices: 74998485--74998537 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
74998475 ATAGGCCCAT
74998485 TGGGCCCACATGACCCACATAGCCCATG
1 TGGGCCCACATG-CCCACATAGCCCATG
* * *
74998513 TGGGCCTACATGCTCATATAGCCCA
1 TGGGCCCACATGCCCACATAGCCCA
74998538 CAAAGCGCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.25, C:0.36, G:0.21, T:0.19
Consensus pattern (27 bp):
TGGGCCCACATGCCCACATAGCCCATG
Found at i:75000752 original size:27 final size:28
Alignment explanation
Indices: 75000695--75000764 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
75000685 AAATTTGTAC
**
75000695 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
75000723 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
75000750 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75000765 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:75000773 original size:27 final size:27
Alignment explanation
Indices: 75000695--75000776 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
75000685 AAATTTGTAC
* *
75000695 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
75000723 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
75000750 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
75000777 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:75013193 original size:40 final size:40
Alignment explanation
Indices: 75013144--75013351 Score: 244
Period size: 40 Copynumber: 5.2 Consensus size: 40
75013134 TCTTCGGAAT
* *
75013144 TTAG-CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAA-TGCCTTCGGGTC
* * *** * *
75013183 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
*
75013223 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
75013263 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
* **
75013303 TTAGCCCGGATATAATC-ATTAGCATAAATGCCTTC-GGTAC
1 TTAGCCCGGATATAA-CAACTAGCACGAATGCCTTCGGGT-C
75013343 TTAGCCCGG
1 TTAGCCCGG
75013352 GTATCATTCA
Statistics
Matches: 146, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 6 0.04
40 137 0.94
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
Found at i:75018047 original size:43 final size:42
Alignment explanation
Indices: 75017980--75018090 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 42
75017970 GACAAGTACA
* * * *
75017980 ATGCCGACGTCCCATACGTGGTCTTAGATGTAATTCAG-TATCG
1 ATGCCGATGTCCCAGACATGGTCTTAGATGTAA-ACAGATA-CG
** *
75018023 ATGCCTCTGTCCCAGACA-GAGTCTTATATGTAAACAGATACG
1 ATGCCGATGTCCCAGACATG-GTCTTAGATGTAAACAGATACG
75018065 ATGCCGATGTCCCAGACATGGTCTTA
1 ATGCCGATGTCCCAGACATGGTCTTA
75018091 CACGTAAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
42 28 0.50
43 28 0.50
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACATGGTCTTAGATGTAAACAGATACG
Found at i:75020582 original size:42 final size:43
Alignment explanation
Indices: 75020511--75020620 Score: 143
Period size: 42 Copynumber: 2.5 Consensus size: 43
75020501 TCTTACATAT
* *
75020511 AATCAAATATCGATGCCACTGTCCTAAACAAGATCTTACACG-A
1 AATCAAATA-CGATGCCAATGTCCCAAACAAGATCTTACACGTA
*
75020554 AATCAAATACGATGCCAATGTCCCAAACATGATCTTACACGTA
1 AATCAAATACGATGCCAATGTCCCAAACAAGATCTTACACGTA
*
75020597 AATCATAAGTA-GATACCAATGTCC
1 AATCA-AA-TACGATGCCAATGTCC
75020621 TAGATGTGGT
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
42 29 0.48
43 15 0.25
44 14 0.23
45 2 0.03
ACGTcount: A:0.40, C:0.25, G:0.12, T:0.24
Consensus pattern (43 bp):
AATCAAATACGATGCCAATGTCCCAAACAAGATCTTACACGTA
Found at i:75025180 original size:43 final size:43
Alignment explanation
Indices: 75025082--75025246 Score: 144
Period size: 43 Copynumber: 3.9 Consensus size: 43
75025072 ACCTAGATGT
75025082 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGAATTAC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGAATTAC
* **
75025125 AATTACGGGTAAGACCATGTCTGGGACATTAGAGTCATT-AA-T-C
1 GATTACATGTAAGACCATGTCTGGGACATT-G-G-CATTGAATTAC
* * * *
75025168 GATTTCATGTAAGACCTTGTCTGGGACAGTGGCATCGATATGT--
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGA-AT-TAC
* * * *
75025211 GATAACATGTAAGACCATATATGGGATA-TGGCATTG
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG
75025247 TACGAGCTAT
Statistics
Matches: 98, Mismatches: 17, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
40 3 0.03
41 2 0.02
42 9 0.09
43 74 0.76
44 3 0.03
45 3 0.03
46 4 0.04
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGAATTAC
Found at i:75027948 original size:34 final size:32
Alignment explanation
Indices: 75027880--75027964 Score: 134
Period size: 32 Copynumber: 2.6 Consensus size: 32
75027870 TTTAGTGAGT
*
75027880 CACACGCCTGTGTGGTTGGGGGTGTGTAGTCA
1 CACACGCCTGTGTGGTTGGGGGCGTGTAGTCA
*
75027912 CACACGCCTGTGTGGTTGGGGGCGTGTGGTCA
1 CACACGCCTGTGTGGTTGGGGGCGTGTAGTCA
*
75027944 CACACGCCCGTGTGGCTTGGG
1 CACACGCCTGTGTGG-TTGGG
75027965 ACACGCCCGT
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 44 0.90
33 5 0.10
ACGTcount: A:0.11, C:0.24, G:0.41, T:0.25
Consensus pattern (32 bp):
CACACGCCTGTGTGGTTGGGGGCGTGTAGTCA
Found at i:75048200 original size:29 final size:26
Alignment explanation
Indices: 75048135--75048200 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 26
75048125 AAAAACTTAA
75048135 ATTATTATA-TACTATTATTATTCTT
1 ATTATTATATTACTATTATTATTCTT
* *
75048160 ATTAATGA-ATTACTATTATTTTTTACTTT
1 ATT-ATTATATTACTATTA-TTATT-C-TT
75048189 ATTATTATATTA
1 ATTATTATATTA
75048201 TTACTACTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
25 4 0.12
26 11 0.34
27 4 0.12
28 4 0.12
29 9 0.28
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (26 bp):
ATTATTATATTACTATTATTATTCTT
Found at i:75048295 original size:3 final size:3
Alignment explanation
Indices: 75048287--75048362 Score: 125
Period size: 3 Copynumber: 25.3 Consensus size: 3
75048277 ATTTATTTAC
** *
75048287 ATT ATT ATT GCT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
75048335 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
75048363 GACATAACAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:75048788 original size:3 final size:3
Alignment explanation
Indices: 75048780--75048831 Score: 77
Period size: 3 Copynumber: 17.3 Consensus size: 3
75048770 ATGTTATGTC
* * *
75048780 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAG CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
75048828 TAA T
1 TAA T
75048832 GTAAATAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:75051886 original size:7 final size:7
Alignment explanation
Indices: 75051876--75051902 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
75051866 AATCAATAAT
75051876 CACAGTG
1 CACAGTG
75051883 CACAGTG
1 CACAGTG
75051890 CACAGTG
1 CACAGTG
75051897 CACAGT
1 CACAGT
75051903 CAAATAGTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.15
Consensus pattern (7 bp):
CACAGTG
Found at i:75057513 original size:40 final size:40
Alignment explanation
Indices: 75057458--75057625 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
75057448 TGAATGATAC
* *
75057458 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
75057498 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
75057538 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
75057578 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
75057618 CC-GGCTAA
1 CCGGGCTAA
75057626 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:75065491 original size:40 final size:40
Alignment explanation
Indices: 75065436--75065603 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
75065426 TGAATGATAC
* *
75065436 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
75065476 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
75065516 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
75065556 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
75065596 CC-GGCTAA
1 CCGGGCTAA
75065604 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:75070270 original size:46 final size:45
Alignment explanation
Indices: 75070105--75070418 Score: 176
Period size: 46 Copynumber: 6.7 Consensus size: 45
75070095 TGAAAGCCAA
* * *
75070105 TATAAGACCATGTCTGGGGCATGGTATCGGC-ATTAAGATAAGTGCTAG
1 TATAAGACCATGTCTGGGACATGGCATCGGCTA-TGAGAT-AGT-C-AG
* * * *
75070153 TGTAAGA-CATGTCTGGGACAT-GCACCGGCTTTGAGATGTAAGCCAG
1 TATAAGACCATGTCTGGGACATGGCATCGGCTATGAGA--T-AGTCAG
*
75070199 TGA-AAGA-CATATCTGGGACAT-GCATCGGCTATGAGATATGTCAG
1 T-ATAAGACCATGTCTGGGACATGGCATCGGCTATGAGATA-GTCAG
* * *
75070243 TATAAGACCATGTCTGGGACATGGCATCGACACGAATATGTGAAAG-CTAG
1 TATAAGACCATGTCTGGGACATGGCATCG----G-CTATGAGATAGTC-AG
* * * ** *
75070293 TGTAAGACCATGTCTGAGACATGGCGTCGGCCTCGATTTTGATAGTCAA
1 TATAAGACCATGTCTGGGACATGGCATCGG-CT--A-TGAGATAGTCAG
* * *
75070342 TGTAAGACCATGTCTGGGACATGGCATCGTCT-TGATGGATGAGCCAG
1 TATAAGACCATGTCTGGGACATGGCATCGGCTATGA--GAT-AGTCAG
* *
75070389 TATAAGACCATGTCTAGGACATGACATCGG
1 TATAAGACCATGTCTGGGACATGGCATCGG
75070419 TATTATACCC
Statistics
Matches: 210, Mismatches: 35, Indels: 43
0.73 0.12 0.15
Matches are distributed among these distances:
43 2 0.01
44 11 0.05
45 13 0.06
46 54 0.26
47 44 0.21
48 13 0.06
49 35 0.17
50 31 0.15
51 7 0.03
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (45 bp):
TATAAGACCATGTCTGGGACATGGCATCGGCTATGAGATAGTCAG
Found at i:75070363 original size:49 final size:50
Alignment explanation
Indices: 75070245--75070370 Score: 150
Period size: 49 Copynumber: 2.5 Consensus size: 50
75070235 TATGTCAGTA
*
75070245 TAAGACCATGTCTGGGACATGGCATCGACACGAATATGTGAAAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACACGAATATGTGAAAGCTAATG
* * * * * *
75070295 TAAGACCATGTCTGAGACATGGCGTCGGCCTCG-AT-TTTGATAG-TCAATG
1 TAAGACCATGTCTGGGACATGGCATC-GACACGAATATGTGAAAGCT-AATG
75070344 TAAGACCATGTCTGGGACATGGCATCG
1 TAAGACCATGTCTGGGACATGGCATCG
75070371 TCTTGATGGA
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
48 2 0.03
49 33 0.51
50 26 0.40
51 4 0.06
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATCGACACGAATATGTGAAAGCTAATG
Found at i:75074955 original size:40 final size:40
Alignment explanation
Indices: 75074900--75075107 Score: 276
Period size: 40 Copynumber: 5.2 Consensus size: 40
75074890 TGAATGATAC
* * *
75074900 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
75074940 CCGGGCTAAGACCCGAAGGCATTCGTTCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
75074980 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
75075020 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * ** *
75075060 CCGGGTTAAGACCCGATGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
75075100 CC-GGCTAA
1 CCGGGCTAA
75075108 ATTCCGAAGA
Statistics
Matches: 149, Mismatches: 18, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
39 5 0.03
40 142 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:75082953 original size:40 final size:40
Alignment explanation
Indices: 75082898--75083104 Score: 285
Period size: 40 Copynumber: 5.2 Consensus size: 40
75082888 TGAATGATAC
* * *
75082898 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
75082938 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
75082978 -CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
75083017 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
75083057 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
75083097 CC-GGCTAA
1 CCGGGCTAA
75083105 ATTCCGAAGA
Statistics
Matches: 150, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 43 0.29
40 105 0.70
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:75083113 original size:79 final size:80
Alignment explanation
Indices: 75082894--75083104 Score: 309
Period size: 79 Copynumber: 2.7 Consensus size: 80
75082884 CATTTGAATG
* * *
75082894 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
*
75082959 TTCGTGCGAGTTGTT
66 TTCGTGCGAGTTGCT
* * *
75082974 ATA-TCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
*
75083038 TTTGTGCGAGTTGCT
66 TTCGTGCGAGTTGCT
* * *
75083053 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA
75083105 ATTCCGAAGA
Statistics
Matches: 116, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
79 77 0.66
80 39 0.34
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTTGCT
Found at i:75088011 original size:46 final size:46
Alignment explanation
Indices: 75087842--75088058 Score: 194
Period size: 46 Copynumber: 4.7 Consensus size: 46
75087832 ATTGTAGGCT
* * * * *
75087842 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAAAGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAAGTC
* * * ** * *
75087888 AATGTAAGACCATGTCTGGGACATGGCATCGACATTAAGA--CAAGTGTT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAA--GTC
* *
75087936 AGTGTAAGGCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGTC
75087982 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGTC
75088026 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
75088059 ACGGATGTAA
Statistics
Matches: 139, Mismatches: 21, Indels: 21
0.77 0.12 0.12
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 66 0.47
47 28 0.20
48 17 0.12
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGTC
Found at i:75089063 original size:27 final size:28
Alignment explanation
Indices: 75089033--75089132 Score: 100
Period size: 27 Copynumber: 3.7 Consensus size: 28
75089023 ATTAGTTTAC
75089033 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* ** *
75089060 TAAAAATACTAAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
75089087 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
75089114 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
75089133 CTGATTTACA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.11
27 52 0.85
28 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:75089175 original size:54 final size:53
Alignment explanation
Indices: 75089128--75089338 Score: 262
Period size: 54 Copynumber: 3.9 Consensus size: 53
75089118 ATTACCAAAG
* *
75089128 TACCCCTGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCATTT
1 TACCCCTGATTTACAGAATTA-CGTTTTACCCTCGATTTACAGAATTACCATTT
* * * *
75089182 TACCCCCGATTTACATAATTAACGTTTTACCCTCGACTTACAGAATTACCGTTT
1 TACCCCTGATTTACAGAATT-ACGTTTTACCCTCGATTTACAGAATTACCATTT
* * * *
75089236 TA-CCCTGGATTTATAGAATTACCGTTTTACCCTAGATTTATAGAATTACTATTT
1 TACCCCT-GATTTACAGAATTA-CGTTTTACCCTCGATTTACAGAATTACCATTT
* *
75089290 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTAC
1 TACCCCTGATTTACAGAATTAC-GTTTTACCCTCGATTTACAGAATTAC
75089339 TAAAATACCA
Statistics
Matches: 133, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
53 5 0.04
54 124 0.93
55 4 0.03
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (53 bp):
TACCCCTGATTTACAGAATTACGTTTTACCCTCGATTTACAGAATTACCATTT
Found at i:75089339 original size:27 final size:27
Alignment explanation
Indices: 75089131--75089339 Score: 235
Period size: 27 Copynumber: 7.8 Consensus size: 27
75089121 ACCAAAGTAC
75089131 CCCT-GATTTACAGAATTA-TCGTTTTA
1 CCCTCGATTTACAGAATTACT-GTTTTA
* * **
75089157 CCCCCGATTTACATAATTACCATTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
* *
75089184 CCCCCGATTTACATAATTAAC-GTTTTA
1 CCCTCGATTTACAGAATT-ACTGTTTTA
* *
75089211 CCCTCGACTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
* * *
75089238 CCCTGGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
* * *
75089265 CCCTAGATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
75089292 CCCTTGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
75089319 CCCTCGATTTACAAAATTACT
1 CCCTCGATTTACAGAATTACT
75089340 AAAATACCAT
Statistics
Matches: 160, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
26 5 0.03
27 153 0.96
28 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACTGTTTTA
Found at i:75089347 original size:27 final size:27
Alignment explanation
Indices: 75089263--75089539 Score: 84
Period size: 27 Copynumber: 10.2 Consensus size: 27
75089253 ATTACCGTTT
* * * ***
75089263 TACCCTAGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ****
75089290 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
75089317 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * * ** *
75089344 TACCATTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
75089371 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* *** *
75089398 TACCACT-GGTTTGTGAAATTAAC-GAAA
1 TACC-CTCGATTTACAAAATT-ACTAAAA
* * ** *
75089425 TACCCTCAATCTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
75089452 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
75089479 TACCCTTGACTTT-CTGAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * *
75089508 TA-CATTGGTTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
75089534 TACCCT
1 TACCCT
75089540 TGGTTTGTAG
Statistics
Matches: 196, Mismatches: 38, Indels: 32
0.74 0.14 0.12
Matches are distributed among these distances:
26 18 0.09
27 154 0.79
28 11 0.06
29 13 0.07
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:75089364 original size:54 final size:54
Alignment explanation
Indices: 75089115--75089366 Score: 126
Period size: 54 Copynumber: 4.7 Consensus size: 54
75089105 TTCGACTTGT
* * ** * * **
75089115 AAAATTACCAAAGTACCCCTGATTTACAGAATTATCGTTTTACCCCCGATTTAC
1 AAAATTACTAAAATACCATTGATTTACAAAATTACCGTTTTACCCTAGATTTAC
* * *** *** * * * *
75089169 ATAATTACCATTTTACCCCCGATTTACATAATTAACGTTTTACCCTCGACTTAC
1 AAAATTACTAAAATACCATTGATTTACAAAATTACCGTTTTACCCTAGATTTAC
* ***** * * * * *
75089223 AGAATTACCGTTTTACCCTGGATTTATAGAATTACCGTTTTACCCTAGATTTAT
1 AAAATTACTAAAATACCATTGATTTACAAAATTACCGTTTTACCCTAGATTTAC
* *** * * * *
75089277 AGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCATTGATTTACAAAATTACCGTTTTACCCTAGATTTAC
* **
75089331 AAAATTACTAAAATACCATTGGTTTGTAAAATTACC
1 AAAATTACTAAAATACCATTGATTTACAAAATTACC
75089367 AAAATACCCC
Statistics
Matches: 162, Mismatches: 36, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 162 1.00
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (54 bp):
AAAATTACTAAAATACCATTGATTTACAAAATTACCGTTTTACCCTAGATTTAC
Found at i:75089364 original size:81 final size:80
Alignment explanation
Indices: 75089074--75089365 Score: 201
Period size: 81 Copynumber: 3.6 Consensus size: 80
75089064 AATACTAAAA
** ** * * *** *
75089074 TACCCTCGATTTGTAAAATTACTGAAATA-CCTTCGACTTGTAAAATTACCAAAGTACCCCTGAT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTT-GATTTATAAAATTA-CATTTTACCCTTGAT
75089138 TTACAGAATTA-TCGTTT
64 TTACAGAATTACT-GTTT
* * *** ** * * * * *
75089155 TACCCCCGATTTACATAATTACCATTTTACCCCCGATTTACATAATTAACGTTTTACCCTCGACT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATAAAATT-ACATTTTACCCTTGATT
*
75089220 TACAGAATTACCGTTT
65 TACAGAATTACTGTTT
* * * **** * *
75089236 TACCCTGGATTTATAGAATTACCGTTTTACCCTAGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTAC-ATTTTACCCTTGATT
75089301 TACAGAATTACTGTTT
65 TACAGAATTACTGTTT
* * * *
75089317 TACCCTCGATTTACAAAATTACTAAAATACCATTGGTTTGTAAAATTAC
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTAC
75089366 CAAAATACCC
Statistics
Matches: 158, Mismatches: 49, Indels: 8
0.73 0.23 0.04
Matches are distributed among these distances:
80 2 0.01
81 153 0.97
82 3 0.02
ACGTcount: A:0.32, C:0.22, G:0.10, T:0.37
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTACATTTTACCCTTGATTT
ACAGAATTACTGTTT
Found at i:75089375 original size:54 final size:55
Alignment explanation
Indices: 75089317--75089539 Score: 154
Period size: 54 Copynumber: 4.1 Consensus size: 55
75089307 ATTACTGTTT
* * * **
75089317 TACCCTCGA-TTTACAAAATTACTAAAATACCATTGGTTTGTAAAATTACCAAAA
1 TACCCTCGACTTTGCAAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAA
* * * *** * *
75089371 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTAACGAAA
1 TACCCTCGACTTTGCAAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAA
* * * * * *
75089425 TACCCTC-AATCTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTA-CAGAAA
1 TACCCTCGACTTTGCAAAATTACCAAAATACCACTGGTTTACAAAATTACCA-AAA
* * * *
75089479 TACCCTTGACTTT-CTGAAAATTA-TAGAAATA-CATTGGTTTACAAAATTACTAAAA
1 TACCCTCGACTTTGC--AAAATTACCA-AAATACCACTGGTTTACAAAATTACCAAAA
75089534 TACCCT
1 TACCCT
75089540 TGGTTTGTAG
Statistics
Matches: 134, Mismatches: 27, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
53 3 0.02
54 90 0.67
55 28 0.21
56 13 0.10
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (55 bp):
TACCCTCGACTTTGCAAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAA
Found at i:75089418 original size:81 final size:82
Alignment explanation
Indices: 75089331--75089567 Score: 211
Period size: 81 Copynumber: 2.9 Consensus size: 82
75089321 CTCGATTTAC
75089331 AAAATTACTAAAATACCATTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCATTGGTTTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTACCAA
* *
75089396 AATACCAC-TG-GTTTGTG
65 AATACC-CTTGACTTTCTG
* * *** * *
75089413 -AAATTAAC-GAAATACCCTCAATCTGTAAAATTACCAAAATACCCCTGATT-TACAAAGTTA-C
1 AAAATT-ACTAAAATACCATTGGTTTGTAAAATTACCAAAATACCCCTGTTTGTA-AAA-TTACC
75089474 AGAAATACCCTTGACTTTCTG
63 A-AAATACCCTTGACTTTCTG
** * * * *
75089495 AAAATTA-TAGAAATA-CATTGGTTTACAAAATTACTAAAATACCCTTGGTTTGTAGATTTACCA
1 AAAATTACTA-AAATACCATTGGTTTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTACCA
75089558 AAATACCCTT
64 AAATACCCTT
75089568 TTAGGATGAA
Statistics
Matches: 121, Mismatches: 22, Indels: 24
0.72 0.13 0.14
Matches are distributed among these distances:
79 2 0.02
80 9 0.07
81 49 0.40
82 43 0.36
83 16 0.13
84 2 0.02
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (82 bp):
AAAATTACTAAAATACCATTGGTTTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTACCAAA
ATACCCTTGACTTTCTG
Found at i:75089534 original size:26 final size:27
Alignment explanation
Indices: 75089495--75089545 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
75089485 TGACTTTCTG
75089495 AAAATTATAGAAATA-CATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
75089521 AAAATTACTA-AAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
75089546 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:75089641 original size:27 final size:27
Alignment explanation
Indices: 75089611--75089690 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
75089601 TAAAAAGACT
*
75089611 GTAAAGTCCCTATAGGGTAAAGTGACC
1 GTAAAGCCCCTATAGGGTAAAGTGACC
*
75089638 GTAAAGCCCCTGTAGGGTAAAGTGACC
1 GTAAAGCCCCTATAGGGTAAAGTGACC
* * *
75089665 GTAATA-CCCCTGTATGGTAAAATGAC
1 GTAA-AGCCCCTATAGGGTAAAGTGAC
75089691 GAATATGCCC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 47 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.23
Consensus pattern (27 bp):
GTAAAGCCCCTATAGGGTAAAGTGACC
Found at i:75090569 original size:52 final size:51
Alignment explanation
Indices: 75090491--75090626 Score: 215
Period size: 52 Copynumber: 2.7 Consensus size: 51
75090481 GAGGAAGTGC
* *
75090491 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTTCCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
75090543 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
75090594 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
75090627 AGGCCTCCAG
Statistics
Matches: 81, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 8 0.10
51 24 0.30
52 35 0.43
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:75090588 original size:25 final size:26
Alignment explanation
Indices: 75090491--75090626 Score: 183
Period size: 26 Copynumber: 5.3 Consensus size: 26
75090481 GAGGAAGTGC
*
75090491 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
75090517 AAAAGGGCTTATGCCCCAGTTT-TCCG
1 AAAAGGGCTTATGCCCCAGTTTAT-TG
75090543 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
75090569 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
75090594 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
75090617 AAAAGAGGCT
1 AAAAG-GGCT
75090627 AGGCCTCCAG
Statistics
Matches: 100, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 32 0.32
26 55 0.55
27 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:75090824 original size:42 final size:42
Alignment explanation
Indices: 75090759--75090850 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
75090749 TAGTCTCCCC
* * ** *
75090759 AAATAGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
* *
75090801 AAATGGGCTTGCGTACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
75090843 AAATGGGC
1 AAATGGGC
75090851 CTATGGGCTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:75090916 original size:31 final size:31
Alignment explanation
Indices: 75090874--75090952 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
75090864 CGTTTACAGT
75090874 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
75090905 AAAGGCCTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
75090936 AAAGGTTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
75090953 AACCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:75093596 original size:29 final size:29
Alignment explanation
Indices: 75093564--75093636 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
75093554 CTTCGAGCTC
*
75093564 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
75093593 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
75093622 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
75093637 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:75096477 original size:54 final size:54
Alignment explanation
Indices: 75096404--75096525 Score: 147
Period size: 54 Copynumber: 2.2 Consensus size: 54
75096394 AATACATTAG
* *
75096404 TTTACTAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTAAAATACCCTCGA
1 TTTA-TAAAATTACCGAAATA-CCTTAGACTTGTAAAAATACCAAAATACCCTCGA
* * * * *
75096459 TTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCTCGA
1 TTTATAAAATTACCGAAATACCTTAGACTTGTAAAAATACCAAAATACCCTCGA
*
75096513 TTTATAGAATTAC
1 TTTATAAAATTAC
75096526 AGTTTTACCC
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
53 5 0.09
54 49 0.86
55 3 0.05
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (54 bp):
TTTATAAAATTACCGAAATACCTTAGACTTGTAAAAATACCAAAATACCCTCGA
Found at i:75096523 original size:27 final size:27
Alignment explanation
Indices: 75096409--75096525 Score: 114
Period size: 27 Copynumber: 4.3 Consensus size: 27
75096399 ATTAGTTTAC
*
75096409 TAAAATTAC-CGAAATACCCT-TAGTTTG
1 TAAAATTACTC-AAATACCCTCGA-TTTG
* *
75096436 TAAAAATACTAAAATACCCTCGATTTG
1 TAAAATTACTCAAATACCCTCGATTTG
* * *
75096463 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTCAAATACCCTCGATTTG
*
75096490 TAAAATTAC-CAAAGTACCCTCGATTTA
1 TAAAATTACTCAAA-TACCCTCGATTTG
*
75096517 TAGAATTAC
1 TAAAATTAC
75096526 AGTTTTACCC
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.04
27 71 0.95
28 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
TAAAATTACTCAAATACCCTCGATTTG
Found at i:75096578 original size:81 final size:80
Alignment explanation
Indices: 75096493--75096642 Score: 174
Period size: 80 Copynumber: 1.9 Consensus size: 80
75096483 CGACTTGTAA
* * * * *
75096493 AATTACCAAAGTACCCTCGATTTATAGAATTACAGTTTTACCCCCGATTTACATAATTATCGTTT
1 AATTACCAAAGTACCCTCGACTTACAGAATTACAG-TTTAACCCCGATTTACAGAATTACCGTTT
75096558 TACCCCCTATTTACAT
65 TACCCCCTATTTACAT
* **** * * *
75096574 AATTATCGTTTTACCCTCGACTTACAGAATTATAGTTTAATCTCGATTTACAGAATTACCGTTTT
1 AATTACCAAAGTACCCTCGACTTACAGAATTACAGTTTAACCCCGATTTACAGAATTACCGTTTT
75096639 ACCC
66 ACCC
75096643 TCGATTTATA
Statistics
Matches: 56, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
80 29 0.52
81 27 0.48
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (80 bp):
AATTACCAAAGTACCCTCGACTTACAGAATTACAGTTTAACCCCGATTTACAGAATTACCGTTTT
ACCCCCTATTTACAT
Found at i:75096637 original size:26 final size:27
Alignment explanation
Indices: 75096504--75096712 Score: 217
Period size: 27 Copynumber: 7.8 Consensus size: 27
75096494 ATTACCAAAG
*
75096504 TACCCTCGATTTATAGAATTA-CAGTTT
1 TACCCTCGATTTACAGAATTATC-GTTT
* *
75096531 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
* * *
75096558 TACCCCCTATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
* *
75096585 TACCCTCGACTTACAGAATTATAG-TT
1 TACCCTCGATTTACAGAATTATCGTTT
** *
75096611 TAATCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
* *
75096638 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
** * *
75096665 TACCCTTAATTTATAGAATTA-CTATTT
1 TACCCTCGATTTACAGAATTATC-GTTT
*
75096692 TACCCTCGATTTACACAATTA
1 TACCCTCGATTTACAGAATTA
75096713 CTAAAATACC
Statistics
Matches: 152, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
26 21 0.14
27 130 0.86
28 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTATCGTTT
Found at i:75096648 original size:107 final size:107
Alignment explanation
Indices: 75096508--75096712 Score: 270
Period size: 107 Copynumber: 1.9 Consensus size: 107
75096498 CCAAAGTACC
* *
75096508 CTCGATTTATAGAATTACAGTTTTACCCCCGATTTACATAATTATCGTTTTACCCCCT-ATTTAC
1 CTCGATTTACAGAATTACAGTTTTACCCCCGATTTACAGAATTATCGTTTTA-CCCCTAATTTAC
* * *
75096572 ATAATTA-TCGTTTTACCCTCGACTTACAGAATTATAGTTTAAT
65 AGAATTACT-ATTTTACCCTCGACTTACACAATTATAGTTTAAT
* * * * * *
75096615 CTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTATTGTTTTACCCTTAATTTATA
1 CTCGATTTACAGAATTACAGTTTTACCCCCGATTTACAGAATTATCGTTTTACCCCTAATTTACA
*
75096680 GAATTACTATTTTACCCTCGATTTACACAATTA
66 GAATTACTATTTTACCCTCGACTTACACAATTA
75096713 CTAAAATACC
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
106 4 0.05
107 79 0.94
108 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.42
Consensus pattern (107 bp):
CTCGATTTACAGAATTACAGTTTTACCCCCGATTTACAGAATTATCGTTTTACCCCTAATTTACA
GAATTACTATTTTACCCTCGACTTACACAATTATAGTTTAAT
Found at i:75096738 original size:27 final size:27
Alignment explanation
Indices: 75096708--75096940 Score: 161
Period size: 27 Copynumber: 8.7 Consensus size: 27
75096698 CGATTTACAC
* *
75096708 AATTACTAAAATACCATTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
*
75096735 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * *
75096762 AATTGCCAAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTAGTTTGTAA
* * *
75096789 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* **
75096816 AATTACCAAAATA-CCTGA-TTTACAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * *
75096841 AGTTA-CAGAAATACCCTTGACTTTCTAA
1 AATTACCA-AAATACCCTT-AGTTTGTAA
* * * **
75096869 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTAGTTTGTAA
** * *
75096896 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
75096923 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
75096941 GTAGGATGAA
Statistics
Matches: 163, Mismatches: 36, Indels: 14
0.77 0.17 0.07
Matches are distributed among these distances:
24 2 0.01
25 14 0.09
26 8 0.05
27 117 0.72
28 22 0.13
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:75096750 original size:54 final size:52
Alignment explanation
Indices: 75096692--75096830 Score: 143
Period size: 54 Copynumber: 2.6 Consensus size: 52
75096682 ATTACTATTT
* *
75096692 TACCCTCGATTTACACAATTACTAAAATACCATTAGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTA-A-AATTACCAAAATACCACTAGTTTGTAAAATTACCAAAA
* * * * * *
75096746 TACCCCTAGTTTGTAAAATTGCCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TA-CCCTCGATT-TAAAATTACCAAAATACCACTAGTTTGTAAAATTACCAAAA
*
75096800 TACCCTCAATTTGTAAAATTACCAAAATACC
1 TACCCTCGA-TT-TAAAATTACCAAAATACC
75096831 TGATTTACAA
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
53 4 0.06
54 56 0.80
55 8 0.11
56 2 0.03
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (52 bp):
TACCCTCGATTTAAAATTACCAAAATACCACTAGTTTGTAAAATTACCAAAA
Found at i:75097002 original size:27 final size:27
Alignment explanation
Indices: 75096972--75097063 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
75096962 ACCCCTATTA
*
75096972 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
75096999 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
75097026 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
75097053 GGTAAAATGAC
1 GGTAAAATGAC
75097064 GAATATGCCC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:75097961 original size:25 final size:26
Alignment explanation
Indices: 75097864--75097994 Score: 200
Period size: 26 Copynumber: 5.2 Consensus size: 26
75097854 GAGGAAGTGC
75097864 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
75097890 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
75097916 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
75097942 AAAAGGGCTT-TGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
75097967 AAAAGGGCTT-TG-CCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
75097989 AAAAGG
1 AAAAGG
75097995 CTAGGCCTCC
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
22 6 0.06
23 4 0.04
24 5 0.05
25 26 0.26
26 58 0.59
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:75098186 original size:41 final size:42
Alignment explanation
Indices: 75098129--75098219 Score: 139
Period size: 41 Copynumber: 2.2 Consensus size: 42
75098119 TAGTCTCCCC
* * *
75098129 AAATGGGCTTGCATACATTCATTG-TATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
75098170 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
75098212 AAATGGGC
1 AAATGGGC
75098220 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 23 0.51
42 22 0.49
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:75098278 original size:31 final size:31
Alignment explanation
Indices: 75098243--75098321 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
75098233 CGTTTACAGT
75098243 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
75098274 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
75098305 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
75098322 TTATTTCAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:75100543 original size:27 final size:27
Alignment explanation
Indices: 75100513--75100584 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
75100503 TTTAGTTTAC
*
75100513 TAAAATTACCGAAATACACATAG-TTTG
1 TAAAATTACTGAAATAC-CATAGATTTG
* * *
75100540 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCATAGATTTG
75100567 TAAAATTACTGAAATACC
1 TAAAATTACTGAAATACC
75100585 TTCAACTTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 3 0.08
27 36 0.92
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (27 bp):
TAAAATTACTGAAATACCATAGATTTG
Found at i:75100597 original size:27 final size:27
Alignment explanation
Indices: 75100540--75100602 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
75100530 ACATAGTTTG
* * * *
75100540 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCAACTTA
*
75100567 TAAAATTACTGAAATACCTTCAACTTA
1 TAAAATTACTGAAATACCCTCAACTTA
75100594 TAAAATTAC
1 TAAAATTAC
75100603 CAAAGTACCC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCAACTTA
Found at i:75100661 original size:26 final size:27
Alignment explanation
Indices: 75100608--75100736 Score: 161
Period size: 27 Copynumber: 4.8 Consensus size: 27
75100598 ATTACCAAAG
* * *
75100608 TACCCCCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACATAATTATCGTTT
*
75100635 TACCCTCGATTT-CATAATTATCATTT
1 TACCCTCGATTTACATAATTATCGTTT
* *
75100661 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACATAATTATCGTTT
* *
75100688 TACCCTCGACTTACAGAATTATCGTTT
1 TACCCTCGATTTACATAATTATCGTTT
* *
75100715 GACCCTCGATTTACAAAATTAT
1 TACCCTCGATTTACATAATTAT
75100737 AGAAATACCA
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 22 0.25
27 65 0.75
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACATAATTATCGTTT
Found at i:75100666 original size:53 final size:54
Alignment explanation
Indices: 75100608--75100736 Score: 170
Period size: 53 Copynumber: 2.4 Consensus size: 54
75100598 ATTACCAAAG
* * * *
75100608 TACCCCCGATTTATAGAATTATCGTTTTACCCTCGA-TTTCATAATTATCATTT
1 TACCCCCGATTTACAAAATTATCGTTTTACCCTCGACTTACAGAATTATCATTT
* * *
75100661 TACCCCCGATTTACATAATTACCGTTTTACCCTCGACTTACAGAATTATCGTTT
1 TACCCCCGATTTACAAAATTATCGTTTTACCCTCGACTTACAGAATTATCATTT
* *
75100715 GACCCTCGATTTACAAAATTAT
1 TACCCCCGATTTACAAAATTAT
75100737 AGAAATACCA
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 33 0.51
54 32 0.49
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.39
Consensus pattern (54 bp):
TACCCCCGATTTACAAAATTATCGTTTTACCCTCGACTTACAGAATTATCATTT
Found at i:75100780 original size:27 final size:27
Alignment explanation
Indices: 75100724--75100780 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
75100714 TGACCCTCGA
*
75100724 TTTACAAAATTATAGAAATACCATTGG
1 TTTACAAAATTATAGAAATACCATTAG
*
75100751 TTTACAAAATTACT-GAAATACCCTTAG
1 TTTACAAAATTA-TAGAAATACCATTAG
75100778 TTT
1 TTT
75100781 GTAGATTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCATTAG
Found at i:75100893 original size:27 final size:26
Alignment explanation
Indices: 75100842--75100918 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 26
75100832 TAGGTAAAAA
75100842 GACCGTAAAGCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCTGTAGGGTAAAGT
75100868 GACCGTAAAGCCCTTGTAGGGTAAAGT
1 GACCGTAAAGCCC-TGTAGGGTAAAGT
* *
75100895 GACCGTAATACCCCTGTATGGTAA
1 GACCGTAA-AGCCCTGTAGGGTAA
75100919 TATGACGAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 13 0.28
27 30 0.64
28 4 0.09
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (26 bp):
GACCGTAAAGCCCTGTAGGGTAAAGT
Found at i:75101755 original size:26 final size:26
Alignment explanation
Indices: 75101726--75101861 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
75101716 GAGGAAATGC
75101726 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
75101752 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
75101778 AAAAGGGCTTATGGCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
75101804 AAAAGGGCTT-TGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
75101829 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
75101852 AAAAGAGGCT
1 AAAAG-GGCT
75101862 AGGCCTCTAG
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 28 0.29
26 57 0.59
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:75101804 original size:52 final size:51
Alignment explanation
Indices: 75101726--75101861 Score: 215
Period size: 52 Copynumber: 2.7 Consensus size: 51
75101716 GAGGAAATGC
*
75101726 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAATTTACCG
*
75101778 AAAAGGGCTTATGGCCCAGTTTATTGAAAAGGGCTTTGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAATTTACCG
75101829 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
75101862 AGGCCTCTAG
Statistics
Matches: 80, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 7 0.09
51 24 0.30
52 35 0.44
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAATTTACCG
Found at i:75102059 original size:42 final size:42
Alignment explanation
Indices: 75101994--75102081 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 42
75101984 TAGTCTCCCC
* * ** *
75101994 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATAGGCTTGCATACATCCATTGACATTACATATGATATTG
*
75102036 AAATAGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATAGGCTTGCATACATCCATTGACATTACATATGATATTG
75102078 AAAT
1 AAAT
75102082 GGGCCTATGG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (42 bp):
AAATAGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:75103658 original size:30 final size:31
Alignment explanation
Indices: 75103587--75103662 Score: 109
Period size: 30 Copynumber: 2.5 Consensus size: 31
75103577 CAACATATAT
*
75103587 TGGGCCGAAGCCTTTGCATTATTCATGTCAC
1 TGGGCCGAAGCCTTTGCATTATTCATATCAC
* * *
75103618 TAGGCTGAAGCCTTTTCATTA-TCATATCAC
1 TGGGCCGAAGCCTTTGCATTATTCATATCAC
75103648 TGGGCCGAAGCCTTT
1 TGGGCCGAAGCCTTT
75103663 ACTGTAAACG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 21 0.54
31 18 0.46
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTGCATTATTCATATCAC
Found at i:75103902 original size:25 final size:24
Alignment explanation
Indices: 75103870--75103954 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 24
75103860 CTGGAGGCCT
*
75103870 AGCCTTTTTTAGT-AACTAGGGCAA
1 AGCCTTTTTGA-TAAACTAGGGCAA
*
75103894 AGCCGTTTTTGATAAACTGGGGCAA
1 AGCC-TTTTTGATAAACTAGGGCAA
* * *
75103919 AGCCCTTTTCGGTAAACTGGGGCAAA
1 AG-CCTTTTTGATAAACTAGGGC-AA
*
75103945 AGCCCTTTTG
1 AGCCTTTTTG
75103955 CACTTCCTCC
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
24 5 0.10
25 40 0.78
26 6 0.12
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (24 bp):
AGCCTTTTTGATAAACTAGGGCAA
Found at i:75103953 original size:26 final size:25
Alignment explanation
Indices: 75103883--75103953 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
75103873 CTTTTTTAGT
* * *
75103883 AACTAGGGCAAAGCCGTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
75103908 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
75103933 AACTGGGGCAAAAGCCCTTTT
1 AACTGGGGC-AAAGCCCTTTT
75103954 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 30 0.73
26 11 0.27
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:75104032 original size:11 final size:11
Alignment explanation
Indices: 75104001--75104048 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
75103991 AAATGAATAC
75104001 ATCATGTGCAT
1 ATCATGTGCAT
*
75104012 ATCA--TACAT
1 ATCATGTGCAT
75104021 ATCATGTGCAT
1 ATCATGTGCAT
*
75104032 ATCATGTCCA-
1 ATCATGTGCAT
75104042 ATCATGT
1 ATCATGT
75104049 ATATCAAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 7 0.22
11 17 0.53
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:75104127 original size:24 final size:24
Alignment explanation
Indices: 75104085--75104131 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
75104075 ATAATTAAAC
* * *
75104085 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAATAGTCATTTTA
75104109 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
75104132 TCATATTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (24 bp):
CCTAGGGGCAAAATAGTCATTTTA
Found at i:75110630 original size:19 final size:18
Alignment explanation
Indices: 75110592--75110631 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
75110582 TTGATTTTAT
*
75110592 TTTAATTTATTTCTGCTA
1 TTTAATTTATTTCTACTA
*
75110610 TTTAATTATATTTCTATTA
1 TTTAATT-TATTTCTACTA
75110629 TTT
1 TTT
75110632 TTAATATTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (18 bp):
TTTAATTTATTTCTACTA
Found at i:75110722 original size:6 final size:6
Alignment explanation
Indices: 75110702--75110766 Score: 51
Period size: 6 Copynumber: 10.3 Consensus size: 6
75110692 GTTTATTTCC
* * * *
75110702 TTTATT TTT-TAT TTTATT TTTATT TTTATT TTGAAT TTTGTT TTTAGCTGC
1 TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTA--T-T
75110753 TTTATT TTTATT TT
1 TTTATT TTTATT TT
75110767 CTTATATTTA
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
5 1 0.02
6 38 0.83
7 2 0.04
8 1 0.02
9 4 0.09
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:75110725 original size:18 final size:19
Alignment explanation
Indices: 75110702--75110789 Score: 60
Period size: 18 Copynumber: 4.6 Consensus size: 19
75110692 GTTTATTTCC
75110702 TTTATTTTTTAT-TTTATT
1 TTTATTTTTTATATTTATT
*
75110720 TTTA-TTTTTAT-TTTGAAT
1 TTTATTTTTTATATTT-ATT
* *
75110738 TTT-GTTTTTAGCTGCTTTATT
1 TTTATTTTTTA--T-ATTTATT
75110759 TTTATTTTCTTATATTTA-T
1 TTTATTTT-TTATATTTATT
*
75110778 TTCATTTTTTAT
1 TTTATTTTTTAT
75110790 CTTTTGAACT
Statistics
Matches: 57, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
17 10 0.18
18 19 0.33
19 8 0.14
20 5 0.09
21 6 0.11
22 6 0.11
23 3 0.05
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.74
Consensus pattern (19 bp):
TTTATTTTTTATATTTATT
Found at i:75110733 original size:24 final size:24
Alignment explanation
Indices: 75110702--75110747 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
75110692 GTTTATTTCC
**
75110702 TTTATTTTTTATTTTATTTTTATT
1 TTTATTTTGAATTTTATTTTTATT
*
75110726 TTTATTTTGAATTTTGTTTTTA
1 TTTATTTTGAATTTTATTTTTA
75110748 GCTGCTTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.78
Consensus pattern (24 bp):
TTTATTTTGAATTTTATTTTTATT
Found at i:75115293 original size:31 final size:31
Alignment explanation
Indices: 75115249--75115419 Score: 252
Period size: 31 Copynumber: 5.5 Consensus size: 31
75115239 TTTAACGGTT
* *
75115249 ACTGGGCCAAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
75115280 ACTGGGTCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
75115311 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* *
75115342 ATTGGGCTGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
** *
75115373 TTTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* *
75115404 ACTTGGCTGAAGCCTT
1 ACTGGGCCGAAGCCTT
75115420 TACTGTAAAC
Statistics
Matches: 127, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 127 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTATCATAAATCATATC
Found at i:75115657 original size:23 final size:24
Alignment explanation
Indices: 75115626--75115708 Score: 96
Period size: 24 Copynumber: 3.4 Consensus size: 24
75115616 CTGGAGGCCT
75115626 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
75115650 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTAATAAACTGGGGCAA
** * *
75115674 AGCCCTTTTCGGTAAAATGGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
75115699 AGCCCTTTTA
1 AGCCCTTTTA
75115709 GCACTTCCTC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
23 7 0.13
24 24 0.46
25 21 0.40
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:75115695 original size:25 final size:24
Alignment explanation
Indices: 75115642--75115707 Score: 96
Period size: 25 Copynumber: 2.7 Consensus size: 24
75115632 TTTTAATAAC
*
75115642 TGGGGCAAAGCCCTTTTGATAAAC
1 TGGGGCAAAGCCCTTTTGATAAAA
*
75115666 TGGGGCAAAGCCCTTTTCGGTAAAA
1 TGGGGCAAAGCCCTTTT-GATAAAA
*
75115691 TGGGGCATAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
75115708 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
24 17 0.45
25 21 0.55
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (24 bp):
TGGGGCAAAGCCCTTTTGATAAAA
Found at i:75116562 original size:27 final size:27
Alignment explanation
Indices: 75116500--75116564 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
75116490 GGGCATATTC
75116500 GTCATTTTACCATACAGAGGTATTACG
1 GTCATTTTACCATACAGAGGTATTACG
* * *
75116527 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGAGG-TATTACG
*
75116554 GTCTTTTTACC
1 GTCATTTTACC
75116565 TAATAGGGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGAGGTATTACG
Found at i:75116647 original size:27 final size:27
Alignment explanation
Indices: 75116594--75116926 Score: 222
Period size: 27 Copynumber: 12.3 Consensus size: 27
75116584 TTTCACCGTA
* * * * *
75116594 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
75116621 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
75116648 CAATGGTGTTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-C
* * *
75116677 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
75116704 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
** ** * *
75116731 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
75116758 CAATGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
75116785 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
75116812 CAGGGGTATTTTAGCAATTTTACAGAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
75116839 C-AGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTTA-TAAAC
* * *
75116865 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
75116892 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
*
75116919 CGAGGGTA
1 CAAGGGTA
75116927 AAACAATAAT
Statistics
Matches: 245, Mismatches: 54, Indels: 14
0.78 0.17 0.04
Matches are distributed among these distances:
26 21 0.09
27 196 0.80
28 16 0.07
29 12 0.05
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAC
Found at i:75116892 original size:80 final size:80
Alignment explanation
Indices: 75116679--75116912 Score: 247
Period size: 81 Copynumber: 2.9 Consensus size: 80
75116669 TAGAAAGTCA
* ** *** *
75116679 AGGGTATTTTTGTAATTTTGTAAATC-AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTC
1 AGGGTATTTTAGTAATTTTACAAA-CGAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
* * * *
75116743 GGTAATTTCACAAACC
65 AGCAATTTTACAGACC
* * *
75116759 AATGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 -AGGGTATTTTAGTAATTTTACAAACGAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
75116824 AGCAATTTTACAGACC
65 AGCAATTTTACAGACC
* * * **
75116840 AGGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTT
1 AGGGTATTTTAGTAATTTTAC-AAACGAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
*
75116904 AGTAATTTT
65 AGCAATTTT
75116913 GTAAATCGAG
Statistics
Matches: 129, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
80 61 0.47
81 68 0.53
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (80 bp):
AGGGTATTTTAGTAATTTTACAAACGAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTA
GCAATTTTACAGACC
Found at i:75116921 original size:54 final size:54
Alignment explanation
Indices: 75116594--75116926 Score: 258
Period size: 54 Copynumber: 6.1 Consensus size: 54
75116584 TTTCACCGTA
* * * * ** *
75116594 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAAT
* * * * *
75116648 CAATGGTGTTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAA-TTTTACAAA-CCAAGGGTATTTTGGTAATTTTGTAAAT
* * *** * *** *
75116704 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAAT
* * * ** *
75116758 CAATGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAAT
* * * * *
75116812 CAGGGGTATTTTAGCAATTTTACAGACC-AGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTT-GTAAAT
* * ** *
75116865 CGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAAT
*
75116919 CGAGGGTA
1 CAAGGGTA
75116927 AAACAATAAT
Statistics
Matches: 222, Mismatches: 50, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
53 41 0.18
54 130 0.59
55 16 0.07
56 35 0.16
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAAT
Found at i:75116937 original size:54 final size:54
Alignment explanation
Indices: 75116879--75117028 Score: 165
Period size: 54 Copynumber: 2.8 Consensus size: 54
75116869 GGTATTTTGG
* *** * *
75116879 TAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAA
1 TAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAA
* * **
75116933 TAATTCTGTAAATTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGG
1 TAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAA
* ** * *
75116987 TAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCG
1 TAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCG
75117029 GTGGTACTTT
Statistics
Matches: 79, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (54 bp):
TAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAA
Found at i:75117034 original size:27 final size:27
Alignment explanation
Indices: 75116904--75117028 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
75116894 AGGGTATTTT
*
75116904 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* ** *
75116931 AATAATTCTGTAAATTAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
75116958 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
75116985 GGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
75117012 GGTAATTATGTAAATCG
1 AGTAATTCTGTAAATCG
75117029 GTGGTACTTT
Statistics
Matches: 84, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:75119957 original size:29 final size:29
Alignment explanation
Indices: 75119920--75120080 Score: 205
Period size: 29 Copynumber: 5.6 Consensus size: 29
75119910 GTGACGAAAT
75119920 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
75119949 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
75119978 TGGCACTAAGTGTGCGTGCTGGAACTATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
75120007 TGACACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
75120036 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
75120065 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
75120081 GGCTTAAATT
Statistics
Matches: 114, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 114 1.00
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:75123063 original size:2 final size:2
Alignment explanation
Indices: 75123056--75123096 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
75123046 TATGTCTTTT
75123056 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
75123097 GCGTTTATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:75125220 original size:17 final size:18
Alignment explanation
Indices: 75125198--75125231 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75125188 CACATTGAAG
75125198 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
75125215 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
75125232 ATTCAAAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:75126292 original size:29 final size:29
Alignment explanation
Indices: 75126250--75126341 Score: 100
Period size: 28 Copynumber: 3.2 Consensus size: 29
75126240 ATCCACACTT
* * *
75126250 ATTCATTTGGCCCATTTAAG-CCTAATCTC
1 ATTCATATGGCCCA-TTAAGCCCCAATCAC
*
75126279 ATTCATATGGCCCA-TCAGCCCCAATCAC
1 ATTCATATGGCCCATTAAGCCCCAATCAC
* *
75126307 ATTCATATGGCCCA-TCAGGCCCAATCAC
1 ATTCATATGGCCCATTAAGCCCCAATCAC
75126335 ATTCATA
1 ATTCATA
75126342 GTCATGCAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
27 3 0.05
28 41 0.72
29 13 0.23
ACGTcount: A:0.28, C:0.33, G:0.11, T:0.28
Consensus pattern (29 bp):
ATTCATATGGCCCATTAAGCCCCAATCAC
Found at i:75126313 original size:28 final size:28
Alignment explanation
Indices: 75126273--75126341 Score: 120
Period size: 28 Copynumber: 2.5 Consensus size: 28
75126263 ATTTAAGCCT
*
75126273 AATCTCATTCATATGGCCCATCAGCCCC
1 AATCACATTCATATGGCCCATCAGCCCC
*
75126301 AATCACATTCATATGGCCCATCAGGCCC
1 AATCACATTCATATGGCCCATCAGCCCC
75126329 AATCACATTCATA
1 AATCACATTCATA
75126342 GTCATGCAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.30, C:0.35, G:0.10, T:0.25
Consensus pattern (28 bp):
AATCACATTCATATGGCCCATCAGCCCC
Found at i:75129997 original size:80 final size:80
Alignment explanation
Indices: 75129913--75130061 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
75129903 TATGGTAACC
* * * *
75129913 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
75129977 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
75129993 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
75130058 CCGG
66 CCGG
75130062 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:75130003 original size:40 final size:38
Alignment explanation
Indices: 75129954--75130061 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
75129944 ATCACGATTT
*
75129954 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
75129994 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
75130034 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
75130062 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:75132085 original size:6 final size:6
Alignment explanation
Indices: 75132074--75132119 Score: 92
Period size: 6 Copynumber: 7.7 Consensus size: 6
75132064 CCGACTCTCA
75132074 TCTTTG TCTTTG TCTTTG TCTTTG TCTTTG TCTTTG TCTTTG TCTT
1 TCTTTG TCTTTG TCTTTG TCTTTG TCTTTG TCTTTG TCTTTG TCTT
75132120 GGTCATTATG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.00, C:0.17, G:0.15, T:0.67
Consensus pattern (6 bp):
TCTTTG
Found at i:75137277 original size:13 final size:13
Alignment explanation
Indices: 75137259--75137286 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
75137249 TGGATTGAGT
75137259 TGCTTAAGGATTA
1 TGCTTAAGGATTA
75137272 TGCTTAAGGATTA
1 TGCTTAAGGATTA
75137285 TG
1 TG
75137287 AGTCGTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.25, T:0.39
Consensus pattern (13 bp):
TGCTTAAGGATTA
Found at i:75142645 original size:6 final size:6
Alignment explanation
Indices: 75142634--75142671 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
75142624 GACTCTCATA
*
75142634 TTTGTC TTTGTC TTTGTC TTTGTC TTTGTC TTTCTC TT
1 TTTGTC TTTGTC TTTGTC TTTGTC TTTGTC TTTGTC TT
75142672 GGTCATAGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.00, C:0.18, G:0.13, T:0.68
Consensus pattern (6 bp):
TTTGTC
Found at i:75143861 original size:34 final size:33
Alignment explanation
Indices: 75143804--75143868 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 33
75143794 TTATTTGCAT
*
75143804 ACTGTACTGAAATGGGCTAAGGCCTAGACTGCC
1 ACTGTACTAAAATGGGCTAAGGCCTAGACTGCC
*
75143837 ACTGATACTAAAATGGGCTTAGGCCTAGACTG
1 ACTG-TACTAAAATGGGCTAAGGCCTAGACTG
75143869 TTTCTATTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 4 0.14
34 25 0.86
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (33 bp):
ACTGTACTAAAATGGGCTAAGGCCTAGACTGCC
Found at i:75145532 original size:39 final size:39
Alignment explanation
Indices: 75145456--75145639 Score: 201
Period size: 39 Copynumber: 4.6 Consensus size: 39
75145446 GCTACTCGTT
*
75145456 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATT-TAGTAACTCGCA
*
75145496 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
* * *
75145535 CCAATGCCTTCGGGTTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
* * * * * * *
75145574 CAAATGCCTTCGGATCTTAGTCTGGATATAATCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATTTAGTAAC-TCGCA
75145615 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
75145640 CATCATTCGA
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 67 0.55
40 46 0.38
41 8 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
Found at i:75153554 original size:38 final size:40
Alignment explanation
Indices: 75153443--75153623 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
75153433 GCTACTCGTT
* *
75153443 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
75153483 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
75153523 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
75153561 CAAATGCCTTC-GGATCTTAGTCCGG-A-TA-TCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATTAGTAAC-TCGCA
75153599 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75153624 CATCATTCGA
Statistics
Matches: 126, Mismatches: 8, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
37 18 0.14
38 39 0.31
39 22 0.17
40 45 0.36
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:75153565 original size:78 final size:78
Alignment explanation
Indices: 75153445--75153623 Score: 224
Period size: 78 Copynumber: 2.3 Consensus size: 78
75153435 TACTCGTTCA
* *
75153445 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
75153508 ATTTAGTAAC-TCGCAC
65 A--TA-TAACTTAGCAC
**
75153524 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
75153587 TATCACTTAGCAC
66 TATAACTTAGCAC
*
75153600 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
75153624 CATCATTCGA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
75 3 0.03
76 18 0.20
77 14 0.16
78 41 0.46
79 13 0.15
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (78 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAACTTAGCAC
Found at i:75160631 original size:40 final size:39
Alignment explanation
Indices: 75160548--75160739 Score: 181
Period size: 40 Copynumber: 4.8 Consensus size: 39
75160538 TTGAATGATG
* * * * *
75160548 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
*
75160588 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
75160628 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
75160667 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** *
75160708 -CCGGGCTTTGTCCCGAAGGCATTCGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
75160740 CGTTATATCC
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 34 0.26
40 87 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:75160688 original size:79 final size:81
Alignment explanation
Indices: 75160548--75160739 Score: 232
Period size: 79 Copynumber: 2.4 Consensus size: 81
75160538 TTGAATGATG
* * *
75160548 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
75160612 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
75160628 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
75160691 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
** * *
75160708 -CCGGGCTTTGTCCCGAAGGCATTCGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
75160740 CGTTATATCC
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.59
80 39 0.40
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:75160763 original size:79 final size:78
Alignment explanation
Indices: 75160548--75160765 Score: 199
Period size: 79 Copynumber: 2.7 Consensus size: 78
75160538 TTGAATGATG
* * * *
75160548 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTCGAGC-GAGTCACTATATCCGGA-TAA-ATTCCGAAGGCAT
75160611 TCGTGCGAGTTAATAAA
62 TCGTGCGAGTTAATAAA
* * * * * * * *
75160628 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTCGAGCGAGTCACTATATCC-GGATAAATTCCGAAGGCATTCG
*
75160693 TGCGAGTTACTATAA
65 TGCGAGTTAATA-AA
** **
75160708 -CCGGGCTTTGTCCCGAAGGCATTCGAGCGAGTCGTTATATCCGGATAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTCGAGCGAGTCACTATATCCGGATAAATTCCGAAGG
75160766 TACGTGATTC
Statistics
Matches: 113, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
79 67 0.59
80 46 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTCGAGCGAGTCACTATATCCGGATAAATTCCGAAGGCATTCGT
GCGAGTTAATAAA
Found at i:75164811 original size:40 final size:40
Alignment explanation
Indices: 75164689--75164836 Score: 172
Period size: 40 Copynumber: 3.7 Consensus size: 40
75164679 TGAATGATAC
* * * * *
75164689 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATTATAT
* *
75164729 CCGAGCTAAGACCCGAAGGC-ATTAGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATTATAT
** *
75164769 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATTATAT
* *
75164809 CCGGGTTAAGACTCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCAATTGTGC
75164837 TTGTGTTATA
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 87 0.95
41 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATTATAT
Found at i:75171658 original size:39 final size:39
Alignment explanation
Indices: 75171559--75171749 Score: 199
Period size: 40 Copynumber: 4.8 Consensus size: 39
75171549 TGAATGATGT
* * * *
75171559 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AA
* *
75171599 CCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
75171638 TCCGGGCCAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
75171677 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** *
75171718 CCGGGCTTTGTCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
75171750 CATTATATCC
Statistics
Matches: 127, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.27
40 84 0.66
41 9 0.07
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:75171694 original size:79 final size:80
Alignment explanation
Indices: 75171558--75171737 Score: 206
Period size: 79 Copynumber: 2.3 Consensus size: 80
75171548 TTGAATGATG
* * *
75171558 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTC
1 TCCGGGCCAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
75171623 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* * **
75171638 TCCGGGCCAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCCAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
75171700 TCGTGCGAGTTACTATAA
64 TCGTGCGAGTTAATA-AA
***
75171718 -CCGGGCTTTGTCCCGAAGGC
1 TCCGGGCCAAGTCCCGAAGGC
75171738 ATTCGAGCGA
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
78 1 0.01
79 56 0.66
80 28 0.33
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCCAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:75171773 original size:79 final size:78
Alignment explanation
Indices: 75171592--75171775 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 78
75171582 GTGCTAAGTG
75171592 ACTATATCCGGACTAAGA-TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCCAAGCCCGAAG
1 ACTATATCCGGA-TAA-ATTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCCAAGCCCGAAG
* * *
75171656 GCATTTGTGCGAGTT
64 GCATTCGAGCGAGTC
* * * * * * ***
75171671 ACTAAACCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGCTTTGTCCCGAA
1 ACTATATCC-GGATAAATTCCGAAGGCATTCGTGCGAGTTAATA-AATCCGGGCCAAG-CCCGAA
75171735 GGCATTCGAGCGAGTC
63 GGCATTCGAGCGAGTC
*
75171751 ATTATATCCGGATAAATTCCGAAGG
1 ACTATATCCGGATAAATTCCGAAGG
75171776 TACGTGATTC
Statistics
Matches: 83, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
79 54 0.65
80 29 0.35
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (78 bp):
ACTATATCCGGATAAATTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCCAAGCCCGAAGGC
ATTCGAGCGAGTC
Found at i:75177817 original size:40 final size:40
Alignment explanation
Indices: 75177753--75178010 Score: 328
Period size: 40 Copynumber: 6.5 Consensus size: 40
75177743 CGGATGATAA
** * *
75177753 CCGGGCTAAGTCCTTAAGGTATTTGTGCTAGTGACTAAT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT-ATGT
*
75177793 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-GTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATG-T
* *
75177833 CCGGGCTATGTCCCGAAGGCATTTGTGCTAGTGACTAAT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT-ATGT
* * *
75177873 CGGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATGT
*
75177913 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATGT
*
75177953 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATGT
*
75177993 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75178011 TACTTGGTTG
Statistics
Matches: 200, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 19 0.09
40 180 0.90
41 1 0.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATGT
Found at i:75181111 original size:27 final size:27
Alignment explanation
Indices: 75181081--75181136 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
75181071 TATTATATGA
*
75181081 GTATGTGAAATGTGTGAACGGTAACAT
1 GTATGTGAAATGTGTGAACGATAACAT
75181108 GTATGTGAAATGTGTGAACGATAACAT
1 GTATGTGAAATGTGTGAACGATAACAT
75181135 GT
1 GT
75181137 TAATGTTATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (27 bp):
GTATGTGAAATGTGTGAACGATAACAT
Found at i:75189597 original size:40 final size:39
Alignment explanation
Indices: 75189511--75189622 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 39
75189501 GCTGGTAATT
*
75189511 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGAC
1 ACATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC
* *
75189550 TACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-
1 -ACATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGAC
* *
75189592 A-ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ACATCCGGGTTAAGACCCGAAGGCATTTGTGC
75189623 GGGTTACCAT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
40 57 0.90
41 1 0.02
43 5 0.08
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
ACATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC
Found at i:75192485 original size:40 final size:40
Alignment explanation
Indices: 75192402--75192609 Score: 166
Period size: 40 Copynumber: 5.2 Consensus size: 40
75192392 CGGGATTTAA
* * * * * *
75192402 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
75192442 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
75192482 CCGGATTTGGTAACTTGCACAAATGCCTCCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* *
75192522 CCGGATATAACAACTCGCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
75192562 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
75192602 CCGGATAT
1 CCGGATAT
75192610 CATTCCAATG
Statistics
Matches: 136, Mismatches: 31, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
39 2 0.01
40 134 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:75192540 original size:80 final size:80
Alignment explanation
Indices: 75192456--75192609 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
75192446 TTATAGTGAT
* * ** * *
75192456 TCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTCCGGGTCTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTCCGGGACTTAG
75192521 CCCGGATATAACAAC
66 CCCGGATATAACAAC
* * * * * *
75192536 TCGCATGAATGCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAATTGCCTTCGGGACTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTCCGGGACTTAG
75192601 CCCGGATAT
66 CCCGGATAT
75192610 CATTCCAATG
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (80 bp):
TCGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTCCGGGACTTAG
CCCGGATATAACAAC
Found at i:75196937 original size:18 final size:18
Alignment explanation
Indices: 75196910--75196948 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
75196900 TGTCTCCATG
75196910 TATTTCAGGAA-AACATAA
1 TATTTCAGGAATAACA-AA
*
75196928 TATTTTAGGAATAACAAA
1 TATTTCAGGAATAACAAA
75196946 TAT
1 TAT
75196949 AACATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.08, G:0.10, T:0.33
Consensus pattern (18 bp):
TATTTCAGGAATAACAAA
Found at i:75200574 original size:14 final size:14
Alignment explanation
Indices: 75200555--75200588 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
75200545 GATTATATTA
75200555 TTACAAAGA-AAAGT
1 TTACAAA-ATAAAGT
75200569 TTACAAAATAAAGT
1 TTACAAAATAAAGT
75200583 TTACAA
1 TTACAA
75200589 TGAGAGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.05
14 18 0.95
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.26
Consensus pattern (14 bp):
TTACAAAATAAAGT
Found at i:75201921 original size:2 final size:2
Alignment explanation
Indices: 75201914--75201938 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
75201904 TATCAATTTC
75201914 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
75201939 GACATTTCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:75202385 original size:41 final size:41
Alignment explanation
Indices: 75202323--75202458 Score: 148
Period size: 41 Copynumber: 3.3 Consensus size: 41
75202313 ATAAAATTTA
* * *
75202323 CTAGGCATAAAGCCT-AGTATAATACACCGGCACAGAGTCTC
1 CTAGGCAAAAAGCCTGA-TATAATACACCGGCACAAAGCCTC
* *
75202364 CTAGGCAAAAAGCCTGATATAATACACCGGCATAAAGCCTG
1 CTAGGCAAAAAGCCTGATATAATACACCGGCACAAAGCCTC
* * * * *
75202405 CTAGGTAATAAGCCTGATATTATACACTGGCACAAAGCCTA
1 CTAGGCAAAAAGCCTGATATAATACACCGGCACAAAGCCTC
* *
75202446 CTATGCATAAAGC
1 CTAGGCAAAAAGC
75202459 TCGAATATCA
Statistics
Matches: 79, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
41 78 0.99
42 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (41 bp):
CTAGGCAAAAAGCCTGATATAATACACCGGCACAAAGCCTC
Found at i:75208627 original size:41 final size:41
Alignment explanation
Indices: 75208559--75208700 Score: 155
Period size: 41 Copynumber: 3.5 Consensus size: 41
75208549 ACATAAAATT
* *
75208559 TGCTAGGC-ATAAAGCCT-AGTATAATACACCAGCACAGAGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
* * *
75208600 TGCTGGGCAATAAGCCTGATATAATACACCGGCATAAAGGC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * * *
75208641 TGCTACGTAATAAGCCTGATATTATACACTGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
75208682 TGCTAGGC-ATAAAGCCTGA
1 TGCTAGGCAAT-AAGCCTGA
75208701 ATATCACTGA
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
40 2 0.02
41 79 0.94
42 3 0.04
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:75210027 original size:27 final size:27
Alignment explanation
Indices: 75209997--75210055 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
75209987 TCAAATAAGA
*
75209997 GGCACCAGTTGTGCCTATATAATAGGC
1 GGCACCAGTAGTGCCTATATAATAGGC
* * * *
75210024 GGCACTAGTAGTGCTTATCTGATAGGC
1 GGCACCAGTAGTGCCTATATAATAGGC
75210051 GGCAC
1 GGCAC
75210056 ACACAATATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (27 bp):
GGCACCAGTAGTGCCTATATAATAGGC
Found at i:75222372 original size:48 final size:48
Alignment explanation
Indices: 75222298--75222593 Score: 416
Period size: 48 Copynumber: 6.2 Consensus size: 48
75222288 TGATGTGATG
* * * * * *
75222298 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCAAAGGGCT
1 AATGTGAAACATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
*
75222346 AATGTGAAACATATATAAGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAACATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
* * * * *
75222394 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAACATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
*
75222442 AATGTGAAACATATATAAGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAACATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
75222490 AATGTG-AA-ATATATGAGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAACATATAT-A-TGATATGTATATGTGGTAAAGCCGAATGGCT
* * *
75222538 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAACATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
75222586 AATGTGAA
1 AATGTGAA
75222594 TGTTGTAACA
Statistics
Matches: 222, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
46 6 0.03
47 3 0.01
48 206 0.93
49 2 0.01
50 5 0.02
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
AATGTGAAACATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:75222462 original size:96 final size:96
Alignment explanation
Indices: 75222298--75222593 Score: 520
Period size: 96 Copynumber: 3.1 Consensus size: 96
75222288 TGATGTGATG
*
75222298 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCAAAGGGCTAATGTGAAACATATATA
1 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
75222363 AGATATGTATATGTGGTAAAGCCGAATGGCT
66 AGATATGTATATGTGGTAAAGCCGAATGGCT
75222394 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
1 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
75222459 AGATATGTATATGTGGTAAAGCCGAATGGCT
66 AGATATGTATATGTGGTAAAGCCGAATGGCT
* * * * * *
75222490 AATGTGAAATATATGAGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
*
75222555 TGATATGTATATGTGGTAAAGCCGAATGGCT
66 AGATATGTATATGTGGTAAAGCCGAATGGCT
75222586 AATGTGAA
1 AATGTGAA
75222594 TGTTGTAACA
Statistics
Matches: 192, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 192 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (96 bp):
AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
AGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:75222490 original size:144 final size:144
Alignment explanation
Indices: 75222320--75222593 Score: 471
Period size: 144 Copynumber: 1.9 Consensus size: 144
75222310 ATGTGTGATG
75222320 TGTATATGTGGTAAAGCCAAAGGGCTAATGTGAAACATATAT-A-AGATATGTATATGTGGTAAA
1 TGTATATGTGGTAAAGCCAAAGGGCTAATGTG-AA-ATATATGAGAGATATGTATATGTGGTAAA
*
75222383 GCCGAATGGCTAATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCTAATGTG
64 GCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCTAATGTG
75222448 AAACATATATAAGATA
129 AAACATATATAAGATA
* * *
75222464 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGAGTGATATGTATATGTGGTAAAGC
1 TGTATATGTGGTAAAGCCAAAGGGCTAATGTGAAATATATGAGAGATATGTATATGTGGTAAAGC
*
75222529 CGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 CGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAA
75222594 TGTTGTAACA
Statistics
Matches: 123, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
142 6 0.05
143 3 0.02
144 114 0.93
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (144 bp):
TGTATATGTGGTAAAGCCAAAGGGCTAATGTGAAATATATGAGAGATATGTATATGTGGTAAAGC
CGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAA
ACATATATAAGATA
Done.