Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 251 of 770
Found at i:75222687 original size:37 final size:37
Alignment explanation
Indices: 75222633--75222715 Score: 148
Period size: 37 Copynumber: 2.2 Consensus size: 37
75222623 AACTTGGAAA
*
75222633 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
75222671 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
75222708 TATGTCCG
1 TATGTCCG
75222716 AGCAAGACTT
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 40 0.91
38 4 0.09
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.27
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:75222723 original size:37 final size:37
Alignment explanation
Indices: 75222646--75222723 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
75222636 GTTCCGGGTG
* *
75222646 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGAGCA
75222683 AGACCCGATGACTACGTGTGGAGATTATGTCCGAGCA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGAGCA
75222720 AGAC
1 AGAC
75222724 TTCGTAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.22
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGTCCGAGCA
Found at i:75225864 original size:20 final size:20
Alignment explanation
Indices: 75225839--75225876 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
75225829 TCGGTTGAAT
75225839 CTGGAGCATCACTATGGTTG
1 CTGGAGCATCACTATGGTTG
*
75225859 CTGGAGCATCACTGTGGT
1 CTGGAGCATCACTATGGT
75225877 CGCCAGAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.21, G:0.32, T:0.29
Consensus pattern (20 bp):
CTGGAGCATCACTATGGTTG
Found at i:75225885 original size:20 final size:20
Alignment explanation
Indices: 75225842--75225885 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
75225832 GTTGAATCTG
* **
75225842 GAGCATCACTATGGTTGCTG
1 GAGCATCACTATGGTCGCCA
*
75225862 GAGCATCACTGTGGTCGCCA
1 GAGCATCACTATGGTCGCCA
75225882 GAGC
1 GAGC
75225886 GATCCACTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (20 bp):
GAGCATCACTATGGTCGCCA
Found at i:75226292 original size:2 final size:2
Alignment explanation
Indices: 75226285--75226320 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
75226275 GGAGTGAAAC
* *
75226285 AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75226321 TTATGCAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75231927 original size:35 final size:35
Alignment explanation
Indices: 75231888--75231960 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
75231878 GGTATGTGAT
75231888 ATATATATTATTTATGTGAGATTAATCTGACAAGA
1 ATATATATTATTTATGTGAGATTAATCTGACAAGA
* *
75231923 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTAATCTGACAAGA
75231958 ATA
1 ATA
75231961 AAGAATGTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.38, C:0.05, G:0.16, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTAATCTGACAAGA
Found at i:75243516 original size:37 final size:37
Alignment explanation
Indices: 75243437--75243519 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
75243427 AACCTTTAGT
* * *
75243437 TCGGGGCTTACCCGGACAAAATCTCCACCCGTGGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
*
75243474 TCGGGTCTTACCCGGACATAATCTCCACACGTAGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
75243511 TCGGGTCTT
1 TCGGGTCTT
75243520 TAGAGCTCGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.20, C:0.33, G:0.23, T:0.24
Consensus pattern (37 bp):
TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
Found at i:75243706 original size:47 final size:47
Alignment explanation
Indices: 75243637--75244233 Score: 777
Period size: 47 Copynumber: 12.3 Consensus size: 47
75243627 CCCTTCGGGA
* * * * * *
75243637 CTTATCACATTTATACACTTTCACATCCATCACCTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75243684 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75243731 CTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75243778 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
75243825 CTTATCACATATATTAGGC-CTTATCACATATATACACTTTCACATTCATCACA-TCGGC
1 CTTATCACATATA-TA--CACTT-TCAC--AT-T-CA---TCACA-TCGGC-CATTAGGC
75243883 CATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 C-TTA-------TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75243938 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75243985 CTTGTCACATATATACACTTTCACATTCATCACATC-GCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75244031 CTTATCTCATATATGCACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75244078 CTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75244125 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75244172 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75244219 CTTATCACATATATA
1 CTTATCACATATATA
75244234 TATCTCATAC
Statistics
Matches: 496, Mismatches: 30, Indels: 48
0.86 0.05 0.08
Matches are distributed among these distances:
46 43 0.09
47 379 0.76
48 2 0.00
49 3 0.01
50 5 0.01
52 2 0.00
53 1 0.00
54 6 0.01
55 8 0.02
56 5 0.01
57 5 0.01
58 8 0.02
59 7 0.01
60 1 0.00
61 2 0.00
63 5 0.01
64 3 0.01
65 2 0.00
66 9 0.02
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75243715 original size:25 final size:25
Alignment explanation
Indices: 75243687--75243765 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
75243677 ACTCGGCCTT
*
75243687 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * * *
75243712 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
75243734 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
75243759 ATCACAT
1 ATCACAT
75243766 CGGCCATTAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.12
24 6 0.15
25 18 0.45
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:75243842 original size:19 final size:19
Alignment explanation
Indices: 75243818--75243857 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
75243808 CACATCGGCC
75243818 ATTAGGCCTTATCACATAT
1 ATTAGGCCTTATCACATAT
75243837 ATTAGGCCTTATCACATAT
1 ATTAGGCCTTATCACATAT
75243856 AT
1 AT
75243858 ACACTTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.38
Consensus pattern (19 bp):
ATTAGGCCTTATCACATAT
Found at i:75243852 original size:66 final size:66
Alignment explanation
Indices: 75243771--75243904 Score: 250
Period size: 66 Copynumber: 2.0 Consensus size: 66
75243761 CACATCGGCC
*
75243771 ATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
75243836 T
66 T
*
75243837 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATA
1 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
75243902 T
66 T
75243903 AT
1 AT
75243905 ACACTTTCAC
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (66 bp):
ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
T
Found at i:75243863 original size:113 final size:113
Alignment explanation
Indices: 75243728--75243951 Score: 430
Period size: 113 Copynumber: 2.0 Consensus size: 113
75243718 TTGGCCATTC
*
75243728 GGCCTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATA
75243793 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTA
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTA
75243841 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATA
*
75243906 CACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATAT
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
75243952 ACACTTTCAC
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 109 1.00
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.33
Consensus pattern (113 bp):
GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTA
Found at i:75244057 original size:187 final size:188
Alignment explanation
Indices: 75243837--75244233 Score: 706
Period size: 187 Copynumber: 2.1 Consensus size: 188
75243827 TATCACATAT
*
75243837 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATA
1 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
75243902 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCA
66 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCA
*
75243967 TCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACA-TCGCC
131 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTCGCC
* * *
75244024 ATTAGGCCTTATCTCATATATGCACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATA
1 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
*
75244089 TATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCA
66 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCA
* *
75244154 TCACATCGGCCATTAGGCCTTATCACATATATGCACTTTCACATTCATCACATTGGCC
131 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTCGCC
*
75244212 ATTCGGCCTTATCACATATATA
1 ATTAGGCCTTATCACATATATA
75244234 TATCTCATAC
Statistics
Matches: 198, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
187 175 0.88
188 23 0.12
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (188 bp):
ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTCGCC
Found at i:75253291 original size:40 final size:39
Alignment explanation
Indices: 75253236--75253492 Score: 288
Period size: 40 Copynumber: 6.5 Consensus size: 39
75253226 CGGATGATAA
* * *
75253236 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTACT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTA-TAT
*
75253276 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
75253316 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
75253356 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
75253396 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
75253436 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAT
*
75253476 CC-GGCTAA-ACCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75253493 TACTTGGTTT
Statistics
Matches: 194, Mismatches: 19, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
38 8 0.04
39 8 0.04
40 175 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:75253449 original size:120 final size:120
Alignment explanation
Indices: 75253236--75253460 Score: 319
Period size: 120 Copynumber: 1.9 Consensus size: 120
75253226 CGGATGATAA
* *
75253236 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTACTTCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGACTACTTCCGGGCTAAGTCCCGAAGGCATTCG
* * * *
75253301 TGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
66 TGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAT
* * *
75253356 CCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGTTATTA-TATCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAGA-GCATTTGAGCGAGTGACTACT-TCCGGGCTAAGTCCCGAAGGCATT
* *
75253419 TGTGCAAGTTACCATAACCGGGCTAAGTCCCGAAGGCATTTG
64 CGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTG
75253461 AGCTAGTGGC
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
119 2 0.02
120 90 0.98
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGACTACTTCCGGGCTAAGTCCCGAAGGCATTCG
TGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAT
Found at i:75261491 original size:40 final size:40
Alignment explanation
Indices: 75261396--75261619 Score: 353
Period size: 40 Copynumber: 5.7 Consensus size: 40
75261386 AGTGGCTAAT
* *
75261396 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
*
75261435 T-CGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
75261474 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
75261514 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
* * **
75261554 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
* *
75261594 ACCGGGCTAAATCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75261620 AGCTAGTGGC
Statistics
Matches: 173, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
38 10 0.06
39 26 0.15
40 137 0.79
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
Found at i:75261634 original size:80 final size:80
Alignment explanation
Indices: 75261353--75261652 Score: 344
Period size: 80 Copynumber: 3.8 Consensus size: 80
75261343 TGTTCGGATG
* *
75261353 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTA-ATTCCGGGCTAAGT-CCGAAG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCGAGCT-ACTATA-TCCGGGCTAAGTCCCGAAG
*
75261414 GCATTCGTGCGAGCTACT
63 GCATTTGTGCGAGCTACT
* * * *
75261432 AT-ATCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCA
*
75261496 TTTGTGCGAGCTATT
66 TTTGTGCGAGCTACT
* * *
75261511 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCA
* * *
75261576 TTTGTGCAAGTTACC
66 TTTGTGCGAGCTACT
* * * **
75261591 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCTAG-TGGCTATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGCT-ACTATATCCGGGCTAAGTCCCGAAGG
75261653 TACTTGGTTT
Statistics
Matches: 192, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
78 39 0.20
79 45 0.23
80 108 0.56
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGCTACT
Found at i:75261634 original size:120 final size:119
Alignment explanation
Indices: 75261353--75261652 Score: 394
Period size: 120 Copynumber: 2.5 Consensus size: 119
75261343 TGTTCGGATG
75261353 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGT-CCGAAGG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TCCGGGCTAAGTCCCGAAGG
* * **
75261415 CATTCGTGCGAGCTACTATATCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATT
64 CATTCGTGCGAGCTACTATATCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACC
* * * **
75261471 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TGGCTATATCCGGGCTAAGTCCCGAAGGC
* * *
75261535 ATTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACC
65 ATTCGTGCGAGCTACTATAT-CGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACC
* **
75261591 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGG
75261653 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
118 43 0.28
119 45 0.29
120 68 0.44
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
TTCGTGCGAGCTACTATATCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACC
Found at i:75268699 original size:79 final size:81
Alignment explanation
Indices: 75268590--75268772 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
75268580 TACTCGTTCA
* * *
75268590 AATGCCGTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
75268653 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
75268670 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
75268733 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
75268749 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
75268773 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.67
80 27 0.30
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:75268772 original size:40 final size:40
Alignment explanation
Indices: 75268569--75268772 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
75268559 CGGAATTTAA
** * *
75268569 CCGGATATAGCT-ACTCGTTCAAATGCCGTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75268609 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75268649 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
75268688 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
75268728 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
75268768 CCGGA
1 CCGGA
75268773 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:75274265 original size:163 final size:162
Alignment explanation
Indices: 75273996--75274308 Score: 554
Period size: 163 Copynumber: 1.9 Consensus size: 162
75273986 TTCATTCGGG
* *
75273996 ACTCTCCGAAGTGAAATTTATTGCAACTCTTACACTTTGATTTTTGATCATCTACACTCCCTACA
1 ACTCTCCGAAGTGAAATTTATTGCAACTCTTACACTTCGATTTTTGATCATCTACACTCCCCACA
* *
75274061 CTAGTCACCATCGGGGAGGAAGACTTTTGACCTCGTCGCTTAGAGCTTCTTGATCTACCCGAATA
66 CTAGTCACCATCAGAGAGGAAGACTTTTGACCTCGTCGCTTAGAGCTTCTTGATCTACCCGAATA
75274126 TCCCACTGACGAAGTGGAGCGTTCATGCAGGC
131 TCCCACTGACGAAGTGGAGCGTTCATGCAGGC
* *
75274158 ACTCTCCGAAGTGAAATTTGTTGCAACTCTTACACTTCGATTTTTTGATCATCTATACTCCCCAC
1 ACTCTCCGAAGTGAAATTTATTGCAACTCTTACACTTCGA-TTTTTGATCATCTACACTCCCCAC
*
75274223 ACTAGTCACCATCAGAGAGGAAGACTTTTGACCTCGTCGCTTAGAGCTTGTTGATCTACCCGAAT
65 ACTAGTCACCATCAGAGAGGAAGACTTTTGACCTCGTCGCTTAGAGCTTCTTGATCTACCCGAAT
75274288 ATCCCACTGACGAAGTGGAGC
130 ATCCCACTGACGAAGTGGAGC
75274309 CCTCATGTAG
Statistics
Matches: 143, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
162 38 0.27
163 105 0.73
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (162 bp):
ACTCTCCGAAGTGAAATTTATTGCAACTCTTACACTTCGATTTTTGATCATCTACACTCCCCACA
CTAGTCACCATCAGAGAGGAAGACTTTTGACCTCGTCGCTTAGAGCTTCTTGATCTACCCGAATA
TCCCACTGACGAAGTGGAGCGTTCATGCAGGC
Found at i:75276572 original size:37 final size:37
Alignment explanation
Indices: 75276509--75276727 Score: 339
Period size: 37 Copynumber: 5.9 Consensus size: 37
75276499 GCTCAGACGA
* *
75276509 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
75276546 ACTCTCCACACGTAGTCATCGAGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* * *
75276583 AATCTCCACACGCAGTTATCGGGTCTTACCCTGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
75276620 AATCTCCACACGTAGTCATCGGGTCTTACCCTGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
75276657 AATCTCCACACGCAGTCATCGGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
75276694 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
75276728 ATATATTTCC
Statistics
Matches: 166, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 166 1.00
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:75276843 original size:48 final size:48
Alignment explanation
Indices: 75276772--75277681 Score: 1423
Period size: 48 Copynumber: 19.0 Consensus size: 48
75276762 TGTTACAACA
* *
75276772 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
75276820 TTCACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
75276868 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
75276916 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
75276964 TTCACATTAGCCATTCGGCTTTACCATATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
75277012 TTCACATTCA-CCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATT-AGCCATTCGGCTTTACCACATATACATATCTCATATATAT
75277060 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
75277108 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
75277156 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
75277204 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-TATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
75277251 TTCACATTAGCCATTCGGCTTTACCACAGATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
75277299 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
75277347 TTCACATTATCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
75277395 TTCACATTAGCCATTCGGCTTTACCACATATACATAGCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
** * *
75277443 TTCACATTCTCCATTCGGCTTTGCCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
75277491 TTCACATTCGCCATTCGGCTTTACCGCATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
75277539 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
75277587 TTCACATTCA-CCATTCGGCTTTACCACATATACATGTCACACATATAT
1 TTCACATT-AGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
75277635 TTCACATTAGCCATTC-GCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
75277682 ATATTTATCT
Statistics
Matches: 789, Mismatches: 68, Indels: 11
0.91 0.08 0.01
Matches are distributed among these distances:
47 77 0.10
48 710 0.90
49 2 0.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:75279670 original size:13 final size:13
Alignment explanation
Indices: 75279652--75279677 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75279642 AAGATGAACA
75279652 TTTTTTTTTCTTT
1 TTTTTTTTTCTTT
75279665 TTTTTTTTTCTTT
1 TTTTTTTTTCTTT
75279678 CTTCCATTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
TTTTTTTTTCTTT
Found at i:75281216 original size:40 final size:40
Alignment explanation
Indices: 75281167--75281303 Score: 229
Period size: 40 Copynumber: 3.4 Consensus size: 40
75281157 CCAACATGAT
* *
75281167 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
75281207 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* *
75281247 TGCTCTTCGGAACTTAGTCCGGATACATTACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
75281287 TGCTCTTCGGAACTTAG
1 TGCTCTTCGGGACTTAG
75281304 CACGAATGCT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
Found at i:75281308 original size:23 final size:23
Alignment explanation
Indices: 75281278--75281326 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
75281268 GATACATTAC
75281278 TAGCACGAATGCTCTTCGGAACT
1 TAGCACGAATGCTCTTCGGAACT
75281301 TAGCACGAATGCTCTTCGGAACT
1 TAGCACGAATGCTCTTCGGAACT
75281324 TAG
1 TAG
75281327 TCCAGATACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGAACT
Found at i:75281337 original size:63 final size:63
Alignment explanation
Indices: 75281238--75281366 Score: 240
Period size: 63 Copynumber: 2.0 Consensus size: 63
75281228 GATACATCAC
* *
75281238 TAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATTACTAGCACGAATGCTCTTCGGAACT
1 TAGCACGAATGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGAACT
75281301 TAGCACGAATGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGAACT
1 TAGCACGAATGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGAACT
75281364 TAG
1 TAG
75281367 TCCGGATACA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (63 bp):
TAGCACGAATGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGAACT
Found at i:75281356 original size:40 final size:40
Alignment explanation
Indices: 75281301--75281421 Score: 224
Period size: 40 Copynumber: 3.0 Consensus size: 40
75281291 CTTCGGAACT
*
75281301 TAGCACGAATGCTCTTCGGAACTTAGTCCAGATACATCAC
1 TAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCAC
75281341 TAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCAC
1 TAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCAC
*
75281381 TAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCAC
1 TAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCAC
75281421 T
1 T
75281422 CTCAATTCTC
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (40 bp):
TAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCAC
Found at i:75281377 original size:103 final size:103
Alignment explanation
Indices: 75281198--75281406 Score: 391
Period size: 103 Copynumber: 2.0 Consensus size: 103
75281188 GATACATCAC
* *
75281198 TAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTA
1 TAGCACGAATGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGAACTTA
*
75281263 GTCCGGATACATTACTAGCACGAATGCTCTTCGGAACT
66 GTCCGGATACATCACTAGCACGAATGCTCTTCGGAACT
75281301 TAGCACGAATGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGAACTTA
1 TAGCACGAATGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGAACTTA
75281366 GTCCGGATACATCACTAGCACGAATGCTCTTCGGAACT
66 GTCCGGATACATCACTAGCACGAATGCTCTTCGGAACT
75281404 TAG
1 TAG
75281407 TCCGGATATA
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 103 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (103 bp):
TAGCACGAATGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGAACTTA
GTCCGGATACATCACTAGCACGAATGCTCTTCGGAACT
Found at i:75282710 original size:37 final size:37
Alignment explanation
Indices: 75282652--75282867 Score: 330
Period size: 37 Copynumber: 5.9 Consensus size: 37
75282642 GCTCAGACGA
* * *
75282652 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
75282689 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
75282726 AATCTCCACACGCAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
75282763 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* * *
75282800 AATCT-CACACGCAGTCATC-AGTCTTA-CCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
75282834 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
75282868 ATATATTTCC
Statistics
Matches: 162, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
34 12 0.07
35 19 0.12
36 18 0.11
37 113 0.70
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:75283013 original size:48 final size:48
Alignment explanation
Indices: 75282912--75283816 Score: 1448
Period size: 48 Copynumber: 19.0 Consensus size: 48
75282902 TGTTACAACA
* *
75282912 TTCACATTAGCCATTCGGCTTTACCACATCT-CATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
75282959 TTCACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
75283007 TTCACATTAGCCGATT-GGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCC-ATTCGGCTTTACCACATATACATATCTCATATATAT
75283055 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
75283103 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
75283151 TTCACATTCGCCATTCGGCTTTACCACATAT--ATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
75283197 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
75283245 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
75283293 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
75283341 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
75283387 TTCACATTAGCCATTC-GCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
75283434 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
75283482 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
75283529 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
75283577 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
75283625 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
75283673 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
75283721 TTCACATTCGCCATTCGGCTTTACCACATATACATGTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
75283769 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
75283817 ATATTTATCT
Statistics
Matches: 796, Mismatches: 53, Indels: 17
0.92 0.06 0.02
Matches are distributed among these distances:
45 23 0.03
46 64 0.08
47 97 0.12
48 609 0.77
49 3 0.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:75295939 original size:44 final size:43
Alignment explanation
Indices: 75295877--75296015 Score: 172
Period size: 42 Copynumber: 3.2 Consensus size: 43
75295867 TGTGTTTTCG
* * *
75295877 TGTAAGACCACGTCTGGGACATTGGCATCGATATTGAGATTACA
1 TGTAAGACCATGTTTGGGACATTGGCATCGATATT-TGATTACA
***
75295921 TGTAAGACCATGTTTGGGACATTGGCATC-ATATTTGATTTTG
1 TGTAAGACCATGTTTGGGACATTGGCATCGATATTTGATTACA
* * * *
75295963 GGTAAGACCCTGTTTGGGACAGTGGCCTCGATATTTGATTACA
1 TGTAAGACCATGTTTGGGACATTGGCATCGATATTTGATTACA
75296006 TGTAAGACCA
1 TGTAAGACCA
75296016 CGTCTGTGAC
Statistics
Matches: 79, Mismatches: 15, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
42 29 0.37
43 23 0.29
44 27 0.34
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTTTGGGACATTGGCATCGATATTTGATTACA
Found at i:75296027 original size:43 final size:43
Alignment explanation
Indices: 75295877--75296027 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 43
75295867 TGTGTTTTCG
* *
75295877 TGTAAGACCACGTCTGGGACATTGGCATCGATATTGAGATTACA
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATATT-TGATTACA
* * * ***
75295921 TGTAAGACCATGTTTGGGACATTGGCATC-ATATTTGATTTTG
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTACA
* * *
75295963 GGTAAGACC-CTGTTTGGGACAGTGGCCTCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCGATATTTGATTACA
*
75296006 TGTAAGACCACGTCTGTGACAG
1 TGTAAGACCACGTCTGGGACAG
75296028 CCCTAAAGTG
Statistics
Matches: 88, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
42 28 0.32
43 32 0.36
44 28 0.32
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTACA
Found at i:75297728 original size:40 final size:40
Alignment explanation
Indices: 75297673--75297817 Score: 281
Period size: 40 Copynumber: 3.6 Consensus size: 40
75297663 GGATTGATAA
75297673 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
75297713 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75297753 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
75297793 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75297818 AGCAAGTAGT
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:75298116 original size:22 final size:21
Alignment explanation
Indices: 75298075--75298118 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
75298065 GAATGTGCAT
75298075 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
75298097 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
75298119 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:75307559 original size:40 final size:40
Alignment explanation
Indices: 75307431--75307581 Score: 130
Period size: 40 Copynumber: 3.8 Consensus size: 40
75307421 ATAACCATGT
* * * *
75307431 GCACAAATGCCTTTGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
75307471 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75307511 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75307551 GCATAATTGTCTTCGGGAT-TTAGCCC-GATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
75307582 CATTCAATTT
Statistics
Matches: 89, Mismatches: 18, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
39 7 0.08
40 79 0.89
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:75314822 original size:2 final size:2
Alignment explanation
Indices: 75314810--75314842 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
75314800 ATTGTACATG
*
75314810 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
75314843 TCGGCCATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:75315406 original size:27 final size:28
Alignment explanation
Indices: 75315348--75315417 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
75315338 AAATTTGTAC
***
75315348 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCAGATTATAT
75315376 AGCACTAAGTGTGCG-AGCAGATTATAT
1 AGCACTAAGTGTGCGAAGCAGATTATAT
75315403 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75315418 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.62
28 15 0.38
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCAGATTATAT
Found at i:75316983 original size:15 final size:15
Alignment explanation
Indices: 75316958--75316993 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
75316948 TTAAAAAAGG
75316958 AAAACAAATGAATCTT
1 AAAA-AAATGAATCTT
*
75316974 AAAAAAATGAGTCTT
1 AAAAAAATGAATCTT
75316989 AAAAA
1 AAAAA
75316994 CTTAATGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.61, C:0.08, G:0.08, T:0.22
Consensus pattern (15 bp):
AAAAAAATGAATCTT
Found at i:75320043 original size:68 final size:68
Alignment explanation
Indices: 75319929--75320065 Score: 229
Period size: 68 Copynumber: 2.0 Consensus size: 68
75319919 AAAGCCGAAC
* * *
75319929 GGCTAATGTGAAATACATGTGTGATATGTATGTGTGGTAAAACCGAATGGCTAATGTGAAATACA
1 GGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAACCGAATGGCTAATGTGAAATACA
75319994 TGT
66 TGT
* *
75319997 GGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACA
1 GGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAACCGAATGGCTAATGTGAAATACA
75320062 TGT
66 TGT
75320065 G
1 G
75320066 TGATATGTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (68 bp):
GGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAACCGAATGGCTAATGTGAAATACA
TGT
Found at i:75320048 original size:48 final size:48
Alignment explanation
Indices: 75319996--75320296 Score: 467
Period size: 48 Copynumber: 6.3 Consensus size: 48
75319986 GAAATACATG
*
75319996 TGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* *
75320044 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* *
75320092 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* *
75320140 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* * *
75320188 TGGCTAATGTGAAATATATATGAGATGTGTATATGTCGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
* *** *
75320236 TGGCGAATGTGAAATATGCATGAGATATGAATATGTGGTAAAGCCGAA
1 TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
75320284 TGGCTAATGTGAA
1 TGGCTAATGTGAA
75320297 TGTTGTAACA
Statistics
Matches: 238, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 238 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (48 bp):
TGGCTAATGTGAAATACATATGAGATATGTATATGTGGTAAAGCCGAA
Found at i:75320391 original size:37 final size:37
Alignment explanation
Indices: 75320341--75320463 Score: 228
Period size: 37 Copynumber: 3.3 Consensus size: 37
75320331 GGAAATATAT
*
75320341 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
75320378 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
75320415 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75320452 TCCAGGTAAGAC
1 TCCGGGTAAGAC
75320464 TTTGTAATAA
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 84 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75322381 original size:40 final size:40
Alignment explanation
Indices: 75322314--75322624 Score: 464
Period size: 40 Copynumber: 7.8 Consensus size: 40
75322304 GAGAATTGAG
* * *
75322314 AGTGATATATCCAGG-CTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCC-GGACTAAGTTCCGAAGAGCATTCGTGCT
*
75322354 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
75322394 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
75322434 AGTGATGTATCCGAACTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
75322474 AGTGATGTATCCGGACTAAGTTCCGGAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
75322514 AGTGATGTATCCGGACTAAGTT-CGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
75322553 AGTAATGCAACCGGACTAAGTCCCGAAGAGTATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
75322593 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
75322625 ATCATGCTGG
Statistics
Matches: 247, Mismatches: 22, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
39 36 0.15
40 211 0.85
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:75326553 original size:48 final size:48
Alignment explanation
Indices: 75326485--75326996 Score: 817
Period size: 48 Copynumber: 10.7 Consensus size: 48
75326475 TGAAAGTGTT
** *
75326485 TATATGTCATAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
* *
75326533 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
* *
75326581 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
* *
75326629 TATCTGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
* *
75326677 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
*
75326725 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
*
75326773 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
*
75326821 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATTTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
* * *
75326869 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
* * ** *
75326917 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
*
75326965 AATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
75326997 TGTTGTAACA
Statistics
Matches: 435, Mismatches: 29, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 435 1.00
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
Found at i:75327091 original size:37 final size:37
Alignment explanation
Indices: 75327041--75327126 Score: 154
Period size: 37 Copynumber: 2.3 Consensus size: 37
75327031 GGAAATATAT
*
75327041 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75327078 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
75327115 TCCGGGTAAGAC
1 TCCGGGTAAGAC
75327127 TTCGTAATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.22, C:0.20, G:0.35, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75337941 original size:27 final size:26
Alignment explanation
Indices: 75337893--75337952 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
75337883 GCGAAGCTGC
*
75337893 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
75337920 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
75337946 CAAATAT
1 CAGATAT
75337953 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:75338251 original size:8 final size:8
Alignment explanation
Indices: 75338234--75338310 Score: 77
Period size: 8 Copynumber: 9.6 Consensus size: 8
75338224 TACCAAAGTG
*
75338234 GGCCCGTT
1 GGCCCATT
75338242 GGCCCATT
1 GGCCCATT
**
75338250 GGCCTGTT
1 GGCCCATT
75338258 GGCCCATT
1 GGCCCATT
75338266 GG-CCAGTT
1 GGCCCA-TT
**
75338274 GGCCTGTT
1 GGCCCATT
75338282 GGCCCATT
1 GGCCCATT
75338290 GG-CCAGTT
1 GGCCCA-TT
75338298 GGCCCATT
1 GGCCCATT
75338306 GGCCC
1 GGCCC
75338311 GTTTTCAGCC
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
7 6 0.11
8 46 0.82
9 4 0.07
ACGTcount: A:0.08, C:0.34, G:0.32, T:0.26
Consensus pattern (8 bp):
GGCCCATT
Found at i:75338267 original size:24 final size:24
Alignment explanation
Indices: 75338234--75338310 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
75338224 TACCAAAGTG
*
75338234 GGCCCGTTGGCCCA-TTGGCCTGTT
1 GGCCCATTGG-CCAGTTGGCCTGTT
75338258 GGCCCATTGGCCAGTTGGCCTGTT
1 GGCCCATTGGCCAGTTGGCCTGTT
**
75338282 GGCCCATTGGCCAGTTGGCCCATT
1 GGCCCATTGGCCAGTTGGCCTGTT
75338306 GGCCC
1 GGCCC
75338311 GTTTTCAGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
23 3 0.06
24 46 0.94
ACGTcount: A:0.08, C:0.34, G:0.32, T:0.26
Consensus pattern (24 bp):
GGCCCATTGGCCAGTTGGCCTGTT
Found at i:75347992 original size:79 final size:81
Alignment explanation
Indices: 75347857--75348073 Score: 245
Period size: 79 Copynumber: 2.7 Consensus size: 81
75347847 AAATCACGTA
** * *
75347857 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTC-GTTCAAATGCCTTCGGGACATAGCCC-GGTT
1 CCTTCGG-ATCTTAACCCGGATATAG-TAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGGAT
*
75347917 ATAGTAACTCGCATAAATG
64 -TAGTAACTCGCACAAATG
*
75347936 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCA-CACAAATGCCTTCGGG-CTTAGCCCGGGATT
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGGATT
75347998 AGTAACTCGCACAAATG
65 AGTAACTCGCACAAATG
** * *
75348015 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGG
75348074 ACATCATTCG
Statistics
Matches: 118, Mismatches: 11, Indels: 17
0.81 0.08 0.12
Matches are distributed among these distances:
78 3 0.03
79 67 0.57
80 48 0.41
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGGATTA
GTAACTCGCACAAATG
Found at i:75348074 original size:40 final size:40
Alignment explanation
Indices: 75347890--75348074 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
75347880 GCTACTCGTT
* * *
75347890 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
75347930 TAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
*
75347970 CAAATGCCTTCGGG-CTTAGCCCGGGAT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGATATAGTAACTAGCA
* *
75348009 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
75348050 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75348075 CATCATTCGA
Statistics
Matches: 124, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 79 0.64
41 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:75353185 original size:25 final size:26
Alignment explanation
Indices: 75353150--75353236 Score: 81
Period size: 25 Copynumber: 3.4 Consensus size: 26
75353140 ATTCGACAAT
75353150 ATGATTAAATTCATGTATAAGGAAGC
1 ATGATTAAATTCATGTATAAGGAAGC
* ** ** **
75353176 ATGA-TAAATTAAAATAT-TCGACAAT
1 ATGATTAAATTCATGTATAAGGA-AGC
75353201 ATGATTAAATTCATGTATAAGGAAGC
1 ATGATTAAATTCATGTATAAGGAAGC
75353227 ATGA-TAAATT
1 ATGATTAAATT
75353237 AAGTGGCTCT
Statistics
Matches: 44, Mismatches: 14, Indels: 7
0.68 0.22 0.11
Matches are distributed among these distances:
24 2 0.05
25 21 0.48
26 19 0.43
27 2 0.05
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.32
Consensus pattern (26 bp):
ATGATTAAATTCATGTATAAGGAAGC
Found at i:75353196 original size:51 final size:51
Alignment explanation
Indices: 75353137--75353238 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
75353127 ATGTTGGGTT
75353137 AATATTCGACAATATGATTAAATTCATGTATAAGGAAGCATGATAAATTAA
1 AATATTCGACAATATGATTAAATTCATGTATAAGGAAGCATGATAAATTAA
75353188 AATATTCGACAATATGATTAAATTCATGTATAAGGAAGCATGATAAATTAA
1 AATATTCGACAATATGATTAAATTCATGTATAAGGAAGCATGATAAATTAA
75353239 GTGGCTCTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.47, C:0.08, G:0.14, T:0.31
Consensus pattern (51 bp):
AATATTCGACAATATGATTAAATTCATGTATAAGGAAGCATGATAAATTAA
Found at i:75354366 original size:48 final size:48
Alignment explanation
Indices: 75354307--75354651 Score: 557
Period size: 48 Copynumber: 7.1 Consensus size: 48
75354297 GCTGAAATTG
* *
75354307 ATGTATAAGATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
75354355 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
75354403 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
*
75354453 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
75354501 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* * *
75354551 ATATATCAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
75354599 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
75354647 ATGTA
1 ATGTA
75354652 GGCGATGTGT
Statistics
Matches: 278, Mismatches: 13, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
47 1 0.00
48 184 0.66
49 8 0.03
50 84 0.30
51 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:75354487 original size:98 final size:98
Alignment explanation
Indices: 75354307--75354648 Score: 582
Period size: 98 Copynumber: 3.5 Consensus size: 98
75354297 GCTGAAATTG
* * *
75354307 ATGTATAAGATATGTATATGTGGTAAAGCCGAATAGCTAATGTG-AA-ATATGTATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
75354370 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
75354403 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
75354468 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
75354501 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATCAGATATG
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGATATG
*
75354565 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
65 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
75354599 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
75354649 GTAGGCGATG
Statistics
Matches: 232, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
96 41 0.18
97 3 0.01
98 187 0.81
99 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (98 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:75354606 original size:146 final size:146
Alignment explanation
Indices: 75354307--75354651 Score: 561
Period size: 146 Copynumber: 2.4 Consensus size: 146
75354297 GCTGAAATTG
* * *
75354307 ATGTATAAGATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCAT
* *
75354372 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATCAGATATGTATATGTGGTAAAGCCGAAT
75354437 GGCTAATGCGAAATAT
131 GGCTAATGCGAAATAT
*
75354453 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCAT
75354518 ATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATCAGATATGTATATGTGGTAAAGCCG
66 ATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATCAGATATGTATATGTGGTAAAGCCG
* *
75354582 AATGGCTAGTGTG-AA-AT
128 AATGGCTAATGCGAAATAT
*
75354599 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
75354652 GGCGATGTGT
Statistics
Matches: 186, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
145 1 0.01
146 139 0.75
147 4 0.02
148 42 0.23
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (146 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCAT
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATCAGATATGTATATGTGGTAAAGCCGAAT
GGCTAATGCGAAATAT
Found at i:75354904 original size:37 final size:37
Alignment explanation
Indices: 75354800--75354905 Score: 167
Period size: 37 Copynumber: 2.9 Consensus size: 37
75354790 AATATATTCT
*
75354800 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
75354837 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* * * *
75354874 GGGTAAGACCCGATAACTTCATGTGAAGATTT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTT
75354906 CATCTAAGCT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
Found at i:75357414 original size:29 final size:29
Alignment explanation
Indices: 75357375--75357453 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
75357365 CTTAATAATC
*
75357375 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75357405 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75357434 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75357454 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75358114 original size:2 final size:2
Alignment explanation
Indices: 75358096--75358133 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
75358086 TGATGGCCGA
* *
75358096 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75358134 CAACTATACT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75363107 original size:39 final size:39
Alignment explanation
Indices: 75363023--75363204 Score: 210
Period size: 39 Copynumber: 4.6 Consensus size: 39
75363013 GCTACTCGTT
*
75363023 CAAATGCCTTCGGGACATAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
* *
75363063 TAAATGCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
75363102 CAAATGCCTTCGGG-CTTAGCCCGGGA-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC--GATTTAGTAACTCGCA
* * * *
75363141 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCA
*
75363182 CAAA-GCCTTCGGGTCTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
75363205 GACATCATTC
Statistics
Matches: 123, Mismatches: 11, Indels: 17
0.81 0.07 0.11
Matches are distributed among these distances:
38 9 0.07
39 54 0.44
40 48 0.39
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Found at i:75363206 original size:40 final size:40
Alignment explanation
Indices: 75363004--75363206 Score: 222
Period size: 40 Copynumber: 5.1 Consensus size: 40
75362994 CGGAATTTAA
** *
75363004 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75363044 CC-GATTATAGTAACTCGCATAAATGCCTTCGGGACTTAAC
1 CCGGA-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
75363084 CC-GATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
75363122 CCGGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CC-GGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
75363162 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGTCTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
75363202 CCGGA
1 CCGGA
75363207 CATCATTCGA
Statistics
Matches: 141, Mismatches: 13, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
38 9 0.06
39 56 0.40
40 66 0.47
41 10 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:75366642 original size:48 final size:48
Alignment explanation
Indices: 75366568--75366871 Score: 439
Period size: 48 Copynumber: 6.3 Consensus size: 48
75366558 CCGTATAAGA
* *
75366568 CTGGGACATGGCATC-AGCATTGTTATGTGAGCTAGTGTAAGACCATAT
1 CTGGGACATGGCATCGA-CATTGTTATGTGAGCCAGTGTAAGACCATGT
* * *
75366616 CTAGGACATAGCATCGACATCGTTATGTGAGCCAGTGTAAGACCATGT
1 CTGGGACATGGCATCGACATTGTTATGTGAGCCAGTGTAAGACCATGT
* *
75366664 CTGGGTCATGGCATCGACATCGTTATGTGAGCCAGTGTAAGACCATGT
1 CTGGGACATGGCATCGACATTGTTATGTGAGCCAGTGTAAGACCATGT
* *
75366712 CTGGGACATGGCATCGGCATTGTTATGTGAGCCAGTGTAAGACTATGT
1 CTGGGACATGGCATCGACATTGTTATGTGAGCCAGTGTAAGACCATGT
* * * * * *
75366760 TTGGAAAATGGCATCGGCATTATTATGTGAGCTAGTGTAAGACCATGT
1 CTGGGACATGGCATCGACATTGTTATGTGAGCCAGTGTAAGACCATGT
* *
75366808 CTAGGACATGGCATCAACATTGTTATGTGAGCCAGTGTAAGACCATGT
1 CTGGGACATGGCATCGACATTGTTATGTGAGCCAGTGTAAGACCATGT
75366856 CTGGGACATGGCATCG
1 CTGGGACATGGCATCG
75366872 GCATGAGGCA
Statistics
Matches: 227, Mismatches: 28, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
48 226 1.00
49 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
CTGGGACATGGCATCGACATTGTTATGTGAGCCAGTGTAAGACCATGT
Found at i:75366954 original size:43 final size:42
Alignment explanation
Indices: 75366843--75366955 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 42
75366833 TGTGAGCCAG
* * *
75366843 TGTAAGACCATGTCTGGGACATGGCATCGGCATGAGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATGAGACATCA
* * **
75366885 TGTAAGACCATAG-CTAGG-CTATTGGCATCGATATGAGATTTCCA
1 TGTAAGACCAT-GTCTGGGAC-A-TGGCATCGACATGAGACAT-CA
75366929 TGTAAGACCATGTCTGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
75366956 TGGTACGATA
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
41 1 0.02
42 16 0.28
43 22 0.39
44 17 0.30
45 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACATGAGACATCA
Found at i:75372233 original size:29 final size:29
Alignment explanation
Indices: 75372190--75372292 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
75372180 ATGACGAGAT
* * *
75372190 TGGCACTGAGCGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
75372219 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
75372248 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
75372277 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75372293 TGATCGAGTA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:75373861 original size:21 final size:20
Alignment explanation
Indices: 75373835--75373873 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
75373825 GTGTGTTTTG
75373835 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
75373856 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
75373874 ACAAGTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:75378284 original size:39 final size:39
Alignment explanation
Indices: 75378230--75378448 Score: 287
Period size: 39 Copynumber: 5.6 Consensus size: 39
75378220 AAAGCCTTCG
* **
75378230 GGACTTTAAGCCCGGATAT-ATTCCCAGCACGTAGCCTAC
1 GGACTTTAAGTCCGGATATAATTCCC-GCATATAGCCTAC
* * *
75378269 GGACCTTAAGTCCGGATATAATTCCTGCATATAGCCTGC
1 GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
* * **
75378308 GAACTTTAAGTCCCGATATAATTCTTGCATATAGCCTAC
1 GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
* *
75378347 AGACTTTAAGTCCGGATATAATTCTCGCATATAGCCTAC
1 GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
*
75378386 GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTGC
1 GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
* *
75378425 GGACTTTTAGTCTGGATATAATTC
1 GGACTTTAAGTCCGGATATAATTC
75378449 TCAAATATCA
Statistics
Matches: 159, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 154 0.97
40 5 0.03
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (39 bp):
GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
Found at i:75378395 original size:117 final size:117
Alignment explanation
Indices: 75378231--75378449 Score: 332
Period size: 117 Copynumber: 1.9 Consensus size: 117
75378221 AAGCCTTCGG
* *
75378231 GACTTTAAGCCCGGATATATTCCCAGCACGTAGCCTACGGACCTTAAGTCCGGATATAATTCCTG
1 GACTTTAAGCCCGGATATATTCCCAGCACATAGCCTACGGACCTTAAGTCCGGATATAATTCCCG
75378296 CATATAGCCTGCGAACTTTAAGTCCCGATATAATTCTTGCATATAGCCTACA
66 CATATAGCCTGCGAACTTTAAGTCCCGATATAATTCTTGCATATAGCCTACA
* * * *
75378348 GACTTTAAGTCCGGATATAATTCTC-GCATATAGCCTACGGACTTTAAGTCCGGATATAATTCCC
1 GACTTTAAGCCCGGATAT-ATTCCCAGCACATAGCCTACGGACCTTAAGTCCGGATATAATTCCC
* * **
75378412 GCATATAGCCTGCGGACTTTTAGTCTGGATATAATTCT
65 GCATATAGCCTGCGAACTTTAAGTCCCGATATAATTCT
75378450 CAAATATCAT
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
117 86 0.95
118 5 0.05
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (117 bp):
GACTTTAAGCCCGGATATATTCCCAGCACATAGCCTACGGACCTTAAGTCCGGATATAATTCCCG
CATATAGCCTGCGAACTTTAAGTCCCGATATAATTCTTGCATATAGCCTACA
Found at i:75391794 original size:40 final size:41
Alignment explanation
Indices: 75391739--75391850 Score: 151
Period size: 40 Copynumber: 2.8 Consensus size: 41
75391729 TATAACCACG
75391739 TGCACGAATGCCTTCGGGTCTTAGCCCGGATAG-A-ACGACT
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGTAGACG-CT
*
75391779 TGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCGCT
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGTAGACGCT
* *
75391819 AGCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 TGCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
75391851 TAATTTCCAG
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
39 3 0.05
40 60 0.92
41 2 0.03
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.24
Consensus pattern (41 bp):
TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGTAGACGCT
Found at i:75399827 original size:40 final size:39
Alignment explanation
Indices: 75399782--75399911 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
75399772 CGGAATACAA
75399782 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
75399822 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
75399862 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
75399902 CCGGATATAA
1 CCGGATATAA
75399912 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:75404534 original size:46 final size:46
Alignment explanation
Indices: 75404481--75404649 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
75404471 TGAGCATCCG
* *
75404481 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTCCA
* * * * *
75404527 AACTCGTTAAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CGTCCA
* * *
75404574 AACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACGCCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTCCA
*
75404620 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
75404650 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 55 0.55
47 27 0.27
48 3 0.03
50 6 0.06
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTCCA
Found at i:75404633 original size:93 final size:93
Alignment explanation
Indices: 75404474--75404644 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
75404464 GGATGGTTGA
* *
75404474 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTAAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTAAGT
75404539 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* ** * *
75404567 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACGCCCAAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTAAGT
75404632 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75404645 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTAAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75404911 original size:19 final size:20
Alignment explanation
Indices: 75404874--75404911 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
75404864 ATAAGGTGGT
75404874 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
75404894 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
75404912 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:75409172 original size:29 final size:29
Alignment explanation
Indices: 75409129--75409234 Score: 167
Period size: 29 Copynumber: 3.7 Consensus size: 29
75409119 ATCGACGCCT
* *
75409129 ATCGAATGTGGAAAGGGATGGTGACAACC
1 ATCGAATATGAAAAGGGATGGTGACAACC
**
75409158 ATCGAATATGAAAAGGGATGGTGATGACC
1 ATCGAATATGAAAAGGGATGGTGACAACC
*
75409187 ATCGAATATGAAAACGGATGGTGACAACC
1 ATCGAATATGAAAAGGGATGGTGACAACC
75409216 ATCGAATATGAAAAGGGAT
1 ATCGAATATGAAAAGGGAT
75409235 AGATTAAAGA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 69 1.00
ACGTcount: A:0.40, C:0.12, G:0.29, T:0.19
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATGGTGACAACC
Found at i:75411515 original size:24 final size:24
Alignment explanation
Indices: 75411299--75411514 Score: 317
Period size: 24 Copynumber: 9.0 Consensus size: 24
75411289 GGTTTATCAT
*
75411299 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
75411324 AAAATTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
75411348 ATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
75411372 ATAACTGGGGCAGAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
75411396 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
75411420 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
75411444 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
75411468 ATAACTGGGGCATAAGCACTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
75411492 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
75411515 GCACTTCCTC
Statistics
Matches: 174, Mismatches: 16, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
24 164 0.94
25 10 0.06
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:75411590 original size:20 final size:20
Alignment explanation
Indices: 75411565--75411624 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
75411555 TATGAATACC
75411565 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
75411585 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
75411605 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
75411625 CCACGTTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:75411595 original size:11 final size:11
Alignment explanation
Indices: 75411565--75411619 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
75411555 TATGAATACC
75411565 TCATGTGCATA
1 TCATGTGCATA
*
75411576 TCA--TACATA
1 TCATGTGCATA
75411585 TCATGTGCATA
1 TCATGTGCATA
* *
75411596 TCA--TACATG
1 TCATGTGCATA
75411605 TCATGTGCATA
1 TCATGTGCATA
75411616 TCAT
1 TCAT
75411620 ACATACCACG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:75411699 original size:25 final size:25
Alignment explanation
Indices: 75411667--75411714 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75411657 ATATATAAAC
* * *
75411667 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
75411692 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
75411715 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:75414082 original size:17 final size:19
Alignment explanation
Indices: 75414040--75414083 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
75414030 ATGAAATTTT
*
75414040 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
75414059 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
75414077 AA-TATTA
1 AATTATTA
75414084 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:75414222 original size:2 final size:2
Alignment explanation
Indices: 75414215--75414245 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
75414205 AGATAGGAAA
*
75414215 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
75414246 AAAGTATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:75415037 original size:5 final size:5
Alignment explanation
Indices: 75415020--75415052 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
75415010 TTTTTTTTTG
*
75415020 TTCTT TTC-C TTCTT TTCTT TTCTT TTCTT TTCT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCT
75415053 CTTCATCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 3 0.12
5 22 0.88
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (5 bp):
TTCTT
Found at i:75419151 original size:14 final size:15
Alignment explanation
Indices: 75419132--75419161 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
75419122 CACTTCTAAA
75419132 TCATCCCTCA-TCCT
1 TCATCCCTCATTCCT
75419146 TCATCCCTCATTCCT
1 TCATCCCTCATTCCT
75419161 T
1 T
75419162 ATTTTCTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.13, C:0.47, G:0.00, T:0.40
Consensus pattern (15 bp):
TCATCCCTCATTCCT
Found at i:75429718 original size:29 final size:29
Alignment explanation
Indices: 75429679--75429754 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
75429669 CTTAATAATC
*
75429679 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75429709 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75429738 AGCCCGCACACTTAGTG
1 AACCCGCACACTTAGTG
75429755 TCAATCTCAC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 35 0.85
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75431503 original size:27 final size:27
Alignment explanation
Indices: 75431472--75431526 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
75431462 TCATATACAT
*
75431472 AACACACAATACATAAGCATATCATCA
1 AACACACAAGACATAAGCATATCATCA
75431499 AACACACAAGACATAAGCATATCATCA
1 AACACACAAGACATAAGCATATCATCA
75431526 A
1 A
75431527 CCATAGCCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.53, C:0.25, G:0.05, T:0.16
Consensus pattern (27 bp):
AACACACAAGACATAAGCATATCATCA
Found at i:75435165 original size:27 final size:27
Alignment explanation
Indices: 75435126--75435319 Score: 176
Period size: 27 Copynumber: 7.2 Consensus size: 27
75435116 TTAGTTTACC
** ***
75435126 AAATTACTGAAATACCCTCGATTAACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
75435153 AAATTACCAAAATACCCT-GGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
75435179 AAATTACCAAAATATCCT-TAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
75435206 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
** **
75435233 AAATTACTGAAATACCCTCGACATGTA
1 AAATTACCAAAATACCCTCGATTTGTA
** * *
75435260 AAATTACTGAAATATCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* **
75435287 AAATTACCAAAGTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
75435314 AAATTA
1 AAATTA
75435320 TTGAAATACC
Statistics
Matches: 138, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 21 0.15
27 116 0.84
28 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:75435292 original size:81 final size:81
Alignment explanation
Indices: 75435126--75435330 Score: 225
Period size: 81 Copynumber: 2.5 Consensus size: 81
75435116 TTAGTTTACC
** * ** ***
75435126 AAATTACTGAAATACCCTCGATTAACAAAATTACCAAAATACCCT-GGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTCGATTTACAAAATTACTGAAATACCCTCGACATGTAAAATTACCAAA
* *
75435190 ATATCCTTAGTTTGTA
66 ATATCCTGAGCTTGTA
* *** **
75435206 AAATTACCAAAATACCCTTGATTTGTGAAATTACTGAAATACCCTCGACATGTAAAATTACTGAA
1 AAATTACCAAAATACCCTCGATTTACAAAATTACTGAAATACCCTCGACATGTAAAATTACCAAA
75435271 ATATCCTCGA-CTTGTA
66 ATATCCT-GAGCTTGTA
* *
75435287 AAATTACCAAAGTACCCTCGATTTACAAAATTATTGAAATACCC
1 AAATTACCAAAATACCCTCGATTTACAAAATTACTGAAATACCC
75435331 ATGTAGGGTA
Statistics
Matches: 101, Mismatches: 22, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
80 36 0.36
81 64 0.63
82 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCGATTTACAAAATTACTGAAATACCCTCGACATGTAAAATTACCAAA
ATATCCTGAGCTTGTA
Found at i:75435345 original size:27 final size:27
Alignment explanation
Indices: 75435315--75435427 Score: 172
Period size: 27 Copynumber: 4.2 Consensus size: 27
75435305 CGATTTACAA
* *
75435315 AATTATTGAAATACCCATGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
75435342 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
75435369 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
75435396 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
75435423 AATTA
1 AATTA
75435428 ACGAGATACC
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:75435373 original size:54 final size:54
Alignment explanation
Indices: 75435315--75435457 Score: 173
Period size: 54 Copynumber: 2.6 Consensus size: 54
75435305 CGATTTACAA
* * ***
75435315 AATTATTGAAATACCCATGTAGGGTAGAATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCATGTAAGGTAGAATTACCAAAATACCCCTGTAGGGTAG
*
75435369 AATTACTGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCATGTAAGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * *
75435423 AATTAAC-GAGATACCC-TCGTGAGGTAAAATTACCA
1 AATT-ACTGAAATACCCAT-GTAAGGTAGAATTACCA
75435458 TTTTGCCCCT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.01
54 75 0.96
55 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCATGTAAGGTAGAATTACCAAAATACCCCTGTAGGGTAG
Found at i:75435825 original size:22 final size:23
Alignment explanation
Indices: 75435793--75435851 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 23
75435783 CCCGTTATCG
*
75435793 ATGGCTCTGTGCCAATC-TAAAT
1 ATGGCTTTGTGCCAATCTTAAAT
* *
75435815 ATGGCTTTGTGCC-ATCTTGACT
1 ATGGCTTTGTGCCAATCTTAAAT
*
75435837 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
75435852 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 27 0.87
23 1 0.03
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (23 bp):
ATGGCTTTGTGCCAATCTTAAAT
Found at i:75436039 original size:27 final size:26
Alignment explanation
Indices: 75436009--75436116 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 26
75435999 ATTCTGTTAA
* *
75436009 GTGGCTTTGCCACATTATCTAATTCTG
1 GTGGCTATGCCACAATATCT-ATTCTG
*
75436036 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTATTCTG
* * *
75436063 GTGGCTCTGCCACAATATTTTTATCTG
1 GTGGCTATGCCACAATATCTAT-TCTG
* * **
75436090 GTGACTCTATCACAATATCTATTCTG
1 GTGGCTATGCCACAATATCTATTCTG
75436116 G
1 G
75436117 CAGCCATGCT
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 12 0.18
27 50 0.74
28 6 0.09
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTATTCTG
Found at i:75436253 original size:6 final size:6
Alignment explanation
Indices: 75436234--75436299 Score: 53
Period size: 6 Copynumber: 10.8 Consensus size: 6
75436224 TTGCATTCAC
* * * *
75436234 ATTCTA ATTCTG ATTTTG ATTCTG ATTCTG -TCACCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
75436283 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
75436300 AGTTCTAATA
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
5 1 0.02
6 41 0.89
7 3 0.07
8 1 0.02
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:75441978 original size:93 final size:93
Alignment explanation
Indices: 75441866--75442037 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
75441856 CGCCCATAAG
* *
75441866 CGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGAACTCAACTC
75441930 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
75441959 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
75442024 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75442038 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 73 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75442033 original size:46 final size:47
Alignment explanation
Indices: 75441859--75442034 Score: 211
Period size: 46 Copynumber: 3.8 Consensus size: 47
75441849 TGTAACCCGC
* *
75441859 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
* *
75441905 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCAT
*
75441955 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
* *
75441998 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75442035 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.54
47 31 0.28
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
Found at i:75442053 original size:46 final size:44
Alignment explanation
Indices: 75441867--75442053 Score: 139
Period size: 46 Copynumber: 4.0 Consensus size: 44
75441857 GCCCATAAGC
* * * * *
75441867 GAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCG-G-ATGC-CAACCATCTAGT
*
75441913 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
75441960 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
*
75442006 GAACTCGAACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
75442052 GA
1 GA
75442054 CATGTCACTT
Statistics
Matches: 113, Mismatches: 15, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 2 0.02
46 61 0.54
47 31 0.27
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:75450051 original size:40 final size:40
Alignment explanation
Indices: 75449996--75450205 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
75449986 AACATTGGAA
75449996 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75450036 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75450076 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
75450116 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
75450155 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
75450196 CTATATCCGG
1 ATATATCCGG
75450206 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:75456163 original size:24 final size:24
Alignment explanation
Indices: 75456136--75456341 Score: 360
Period size: 24 Copynumber: 8.6 Consensus size: 24
75456126 CTTATTATGT
* * *
75456136 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
75456160 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
75456184 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
75456208 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
75456232 TCGCACACATAGTGCCATA-TAAA
1 TCGCACACATAGTGCCATAGTAAA
75456255 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
75456279 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
75456303 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
75456327 TCGCACACATAGTGC
1 TCGCACACATAGTGC
75456342 ATTTGAGATA
Statistics
Matches: 177, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
23 23 0.13
24 154 0.87
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:75456278 original size:95 final size:96
Alignment explanation
Indices: 75456136--75456341 Score: 360
Period size: 95 Copynumber: 2.2 Consensus size: 96
75456126 CTTATTATGT
* * *
75456136 TCGCACACATAGAGCTATAGCAAATCGCACACATAGTGCTATAGTAAATCGCACACATAGTGCCA
1 TCGCACACATAGTGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
75456201 TAGTAAATCGCACACATAGTGCCATAGTAAA
66 TAGTAAATCGCACACATAGTGCCATAGTAAA
*
75456232 TCGCACACATAGTGCCATA-TAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
1 TCGCACACATAGTGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
*
75456296 TAGTAAATCGCACACATAGTGCCATAGTGAA
66 TAGTAAATCGCACACATAGTGCCATAGTAAA
75456327 TCGCACACATAGTGC
1 TCGCACACATAGTGC
75456342 ATTTGAGATA
Statistics
Matches: 105, Mismatches: 5, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
95 88 0.84
96 17 0.16
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (96 bp):
TCGCACACATAGTGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
TAGTAAATCGCACACATAGTGCCATAGTAAA
Found at i:75464060 original size:24 final size:24
Alignment explanation
Indices: 75464033--75464239 Score: 351
Period size: 24 Copynumber: 8.6 Consensus size: 24
75464023 CTTATTATGT
* * *
75464033 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
**
75464057 TCGCACACATAGTGTTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
75464081 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
75464105 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
75464129 TCGCACACATAGTGCCATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
75464153 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
75464177 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
75464201 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
75464225 TCGCACACATAGTGC
1 TCGCACACATAGTGC
75464240 ATTTGAGATA
Statistics
Matches: 175, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 175 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:75465829 original size:47 final size:47
Alignment explanation
Indices: 75465760--75465928 Score: 186
Period size: 47 Copynumber: 3.6 Consensus size: 47
75465750 ATCCATAAGT
*
75465760 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * ***
75465807 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAGT-
1 GAACTCGAACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTCTC
75465853 GAACTC-AGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGA-ACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* *
75465900 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGAACTCAACTCAACGAGCTCGGA
75465929 CATTCGCATC
Statistics
Matches: 98, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 30 0.31
47 57 0.58
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (47 bp):
GAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:75465874 original size:46 final size:46
Alignment explanation
Indices: 75465748--75465974 Score: 214
Period size: 46 Copynumber: 4.9 Consensus size: 46
75465738 GGCTGTTACA
* *
75465748 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC
1 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTC
* *** *
75465792 -CTAGTTACATCTCTCGAACTCGAACTCAACTCAACGAGTTCGGACATTC
1 GC-A--TCCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTC
* * *
75465841 GCATCCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--ATGC
1 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTC
* ***
75465885 -CTAGTTACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTC
1 GC-A--TCCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTC
75465934 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75465975 TGCCCAAATA
Statistics
Matches: 143, Mismatches: 26, Indels: 26
0.73 0.13 0.13
Matches are distributed among these distances:
43 2 0.01
44 5 0.03
46 64 0.45
47 62 0.43
49 8 0.06
50 2 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (46 bp):
GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTC
Found at i:75465912 original size:93 final size:93
Alignment explanation
Indices: 75465748--75465978 Score: 435
Period size: 93 Copynumber: 2.5 Consensus size: 93
75465738 GGCTGTTACA
75465748 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTC
1 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTC
75465813 GAACTCAACTCAACGAGTTCGGACATTC
66 GAACTCAACTCAACGAGTTCGGACATTC
*
75465841 GCATCCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTC
1 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTC
*
75465906 GGACTCAACTCAACGAGTTCGGACATTC
66 GAACTCAACTCAACGAGTTCGGACATTC
*
75465934 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC
75465979 CAAATATCCT
Statistics
Matches: 134, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 134 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
GCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTC
GAACTCAACTCAACGAGTTCGGACATTC
Found at i:75467318 original size:13 final size:13
Alignment explanation
Indices: 75467300--75467324 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75467290 CATGTGGGTG
75467300 CACATGGCCGTGT
1 CACATGGCCGTGT
75467313 CACATGGCCGTG
1 CACATGGCCGTG
75467325 ACTGTCTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.20
Consensus pattern (13 bp):
CACATGGCCGTGT
Found at i:75467484 original size:55 final size:55
Alignment explanation
Indices: 75467385--75467521 Score: 123
Period size: 55 Copynumber: 2.5 Consensus size: 55
75467375 GTTAATCTAA
** ** *
75467385 CAGGTTCAACCACGGGTTCT-AGACACGGGTGTGGAGAATGCCCGTGCTATTTTCT
1 CAGGTTCAACCAC-GGTTCTAAGACACGGACGTGGAGAACACCCGTGCTATTTTCG
** * * * *
75467440 CAGGTTCAACCACGGTTCTAAGACACGGACGTGTTGCACACCCGTGTTGTTTTGG
1 CAGGTTCAACCACGGTTCTAAGACACGGACGTGGAGAACACCCGTGCTATTTTCG
** * *
75467495 CAGGTTCGCCCACGGTCCTAACACACG
1 CAGGTTCAACCACGGTTCTAAGACACG
75467522 ACCGTGGTGA
Statistics
Matches: 66, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
54 6 0.09
55 60 0.91
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (55 bp):
CAGGTTCAACCACGGTTCTAAGACACGGACGTGGAGAACACCCGTGCTATTTTCG
Found at i:75477520 original size:25 final size:25
Alignment explanation
Indices: 75477472--75477555 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 25
75477462 TTGTGAATTG
* * **
75477472 TTTGGAAAGTCTTTGTGGCGATTTA
1 TTTGGGAAGCCTTTGTGGAAATTTA
*
75477497 CTT-GGAAGCCTTTGTGGAAAATTT-
1 TTTGGGAAGCCTTTGTGG-AAATTTA
* *
75477521 TTTGGGAAACCTTTGTGGCAATTTA
1 TTTGGGAAGCCTTTGTGGAAATTTA
75477546 TTTGGGAAGC
1 TTTGGGAAGC
75477556 TTTTATGGCT
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
24 19 0.40
25 28 0.60
ACGTcount: A:0.23, C:0.11, G:0.27, T:0.39
Consensus pattern (25 bp):
TTTGGGAAGCCTTTGTGGAAATTTA
Found at i:75477525 original size:49 final size:50
Alignment explanation
Indices: 75477453--75477555 Score: 120
Period size: 49 Copynumber: 2.1 Consensus size: 50
75477443 AAACCAAACC
* ** * *
75477453 AAGCCTTTGTTGTGAATTGTTT-GGAAAGTCTTTGTGGCGATTTACTT-GG
1 AAGCCTTTGTGGAAAATTGTTTGGGAAA-CCTTTGTGGCAATTTACTTGGG
* *
75477502 AAGCCTTTGTGGAAAATTTTTTGGGAAACCTTTGTGGCAATTTATTTGGG
1 AAGCCTTTGTGGAAAATTGTTTGGGAAACCTTTGTGGCAATTTACTTGGG
75477552 AAGC
1 AAGC
75477556 TTTTATGGCT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
49 34 0.76
50 11 0.24
ACGTcount: A:0.22, C:0.11, G:0.27, T:0.40
Consensus pattern (50 bp):
AAGCCTTTGTGGAAAATTGTTTGGGAAACCTTTGTGGCAATTTACTTGGG
Found at i:75477564 original size:25 final size:24
Alignment explanation
Indices: 75477516--75477564 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
75477506 CTTTGTGGAA
*
75477516 AATTTTTTGGGAAACCTTTGTGGC
1 AATTTTTTGGGAAACCTTTATGGC
* *
75477540 AATTTATTTGGGAAGCTTTTATGGC
1 AATTT-TTTGGGAAACCTTTATGGC
75477565 TAGTTACTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.22, C:0.10, G:0.24, T:0.43
Consensus pattern (24 bp):
AATTTTTTGGGAAACCTTTATGGC
Found at i:75480392 original size:21 final size:22
Alignment explanation
Indices: 75480368--75480409 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
75480358 CTCTTGAAGC
*
75480368 AGGGGC-ACACGCCCTTGTGGA
1 AGGGGCGACACGCCCGTGTGGA
*
75480389 AGGGGCGACATGCCCGTGTGG
1 AGGGGCGACACGCCCGTGTGG
75480410 CCTTCTTGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.26, G:0.43, T:0.14
Consensus pattern (22 bp):
AGGGGCGACACGCCCGTGTGGA
Found at i:75481863 original size:48 final size:48
Alignment explanation
Indices: 75481603--75481923 Score: 298
Period size: 49 Copynumber: 6.6 Consensus size: 48
75481593 AGGCACGATA
*
75481603 CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCA-CATCTAAGT-
1 CCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATCATC--AGTG
* * *
75481652 --GATGCCATGTCCCAAACAGGTCTTACACTGACT-TCCATACATATAG-G
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCT-CAT-CAT-CAGTG
*
75481699 CCGATGCCATGTCCCAAACAGGTCTTACACTGGCATCT-ATACATCGAG-G
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGGC-TCTCAT-CATC-AGTG
* * * * * * *
75481748 CCAATGCTATATACCAGATACGTCTTACACTGGCTCTCACTCATCTGTG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCA-TCATCAGTG
* * * *
75481797 TCGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTTCGGTG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCATCAGTG
* * *
75481845 TCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATCTTCAGTG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCATCAGTG
* * *
75481893 CCAATGCCATGTCCCAGATAAGTCTTACACT
1 CCGATGCCATGTCCCAGACAGGTCTTACACT
75481924 ATCACACACA
Statistics
Matches: 229, Mismatches: 30, Indels: 27
0.80 0.10 0.09
Matches are distributed among these distances:
45 1 0.00
46 16 0.07
47 18 0.08
48 87 0.38
49 104 0.45
50 2 0.01
51 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCATCAGTG
Found at i:75483328 original size:43 final size:43
Alignment explanation
Indices: 75483266--75483435 Score: 207
Period size: 43 Copynumber: 4.0 Consensus size: 43
75483256 TGTGATGTCA
* *
75483266 ATATGTGATTACATCTAAGACCATGTTTGGGACATTGGCATCG
1 ATATGTGATTACATCTAAGACCACGTCTGGGACATTGGCATCG
* * * *
75483309 ATGTGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
1 ATATGTGATTACATCTAAGACCACGTCTGGGACATTGGCATCG
* * * * * *
75483352 ATATGTAATTGCGTTTAAGACC-CTGTCTGGGATAGTGGCATCG
1 ATATGTGATTACATCTAAGACCAC-GTCTGGGACATTGGCATCG
*
75483395 ATATGTGATTACATCTAAGACCACATCTGGGACATTGGCAT
1 ATATGTGATTACATCTAAGACCACGTCTGGGACATTGGCAT
75483436 TGTACGATAT
Statistics
Matches: 105, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
42 1 0.01
43 103 0.98
44 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
ATATGTGATTACATCTAAGACCACGTCTGGGACATTGGCATCG
Found at i:75486065 original size:47 final size:48
Alignment explanation
Indices: 75486014--75486321 Score: 176
Period size: 47 Copynumber: 6.5 Consensus size: 48
75486004 ATGTGAGAGG
* *
75486014 CAGTGTAAGACCATGTCTGGGACATGCATCAGCCAC-ATTATGATAGC
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCCACTATGATGATAGC
*
75486061 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-C-GTA-GA-GATCAGTGC
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCACTATGATGAT-A--GC
* * * * * * * *
75486109 CAATGTAGGA-CGTGTCTGAGACTTGCATCGGCCTCAATGATGGTAGC
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCCACTATGATGATAGC
* * * * * *
75486156 TAGTGTAAGA-CGTGTCTGAGACATGCATC-G--ACTAAGCTTCAT-GC
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCCACTATG-ATGATAGC
* * * * *
75486200 TAGTGTAAGA-CATGTTTGGGACATGCGTCAG-CACTTATACATGATAGC
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCCAC-TAT-GATGATAGC
* * * * * * * *
75486248 TAGTGTAAAACCATGTATGGGACATGGCATCGGTCTCGATAAAGATAGC
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCACTATGATGATAGC
75486297 CAGTGTAA-ACCATGTCTGGGACATG
1 CAGTGTAAGACCATGTCTGGGACATG
75486322 GCATTGGCAA
Statistics
Matches: 204, Mismatches: 39, Indels: 36
0.73 0.14 0.13
Matches are distributed among these distances:
44 30 0.15
45 6 0.03
46 12 0.06
47 72 0.35
48 43 0.21
49 30 0.15
50 9 0.04
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCGGCCACTATGATGATAGC
Found at i:75488448 original size:40 final size:39
Alignment explanation
Indices: 75488374--75488549 Score: 173
Period size: 40 Copynumber: 4.5 Consensus size: 39
75488364 GAGTCACGTA
*
75488374 CCTTCGGGAT-TTAA-CCGGATATA-ACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATATA--ACTAGCACAATTG
* *
75488413 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATA-TAACTAGCACAATTG
*
75488453 CCTTCGGGTCTTAACCCGGATATA-AACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATATAACTAGCAC-AATTG
* * * *
75488491 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATAT-ATAACTAGCACAATTG
* *
75488531 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
75488550 TATCATTCAA
Statistics
Matches: 119, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
38 33 0.28
39 17 0.14
40 68 0.57
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CCTTCGGGTCTTAACCCGGATATATAACTAGCACAATTG
Found at i:75496079 original size:93 final size:93
Alignment explanation
Indices: 75495967--75496137 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
75495957 GCCCATAAGT
* *
75495967 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75496032 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
75496060 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75496125 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75496138 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75496134 original size:46 final size:46
Alignment explanation
Indices: 75495959--75496134 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
75495949 TGTAACCCGC
* * *
75495959 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75496005 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
75496055 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
75496098 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75496135 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75498552 original size:30 final size:30
Alignment explanation
Indices: 75498508--75498596 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
75498498 CAAAGATAAC
75498508 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
75498537 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
75498567 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
75498597 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:75498556 original size:15 final size:15
Alignment explanation
Indices: 75498508--75498587 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
75498498 CAAAGATAAC
*
75498508 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
75498522 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
75498537 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
75498552 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
75498567 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
75498582 AAGAAA
1 AAGAAA
75498588 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:75498596 original size:15 final size:15
Alignment explanation
Indices: 75498519--75498596 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
75498509 AGAAAACCGA
75498519 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
75498534 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
75498548 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
75498563 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
75498579 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
75498594 ATA
1 ATA
75498597 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:75501676 original size:93 final size:93
Alignment explanation
Indices: 75501564--75501734 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
75501554 GCCCATAAGT
* *
75501564 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75501629 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
75501657 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75501722 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75501735 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75501731 original size:46 final size:46
Alignment explanation
Indices: 75501556--75501731 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
75501546 TGTAACCCGC
* * *
75501556 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75501602 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
75501652 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
75501695 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75501732 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75504985 original size:40 final size:40
Alignment explanation
Indices: 75504810--75504981 Score: 195
Period size: 40 Copynumber: 4.3 Consensus size: 40
75504800 GAGTCACGTA
* * *
75504810 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATCACTAGCACAAATG
* * * * *
75504849 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATCACTAGCACAAATG
* * *
75504889 CCTTCGGGTCTTAACCCGGATATAATGACTCGCACGAATG
1 CCTTCGGGTCTTAACCCGGATATAATCACTAGCACAAATG
* *
75504929 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATCACTAGCACAAATG
*
75504969 CCTTCGGGACTTA
1 CCTTCGGGTCTTA
75504982 GCCCAGGTAT
Statistics
Matches: 113, Mismatches: 18, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.11
40 100 0.88
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATCACTAGCACAAATG
Found at i:75512032 original size:40 final size:40
Alignment explanation
Indices: 75511945--75512156 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 40
75511935 CCTTCGGAAT
* * *
75511945 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
75511984 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
75512024 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
75512064 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
75512104 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
75512144 TTAGCCCGGATAT
1 TTAACCCGGATAT
75512157 CATTCCAATG
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:75512070 original size:80 final size:80
Alignment explanation
Indices: 75511945--75512156 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 80
75511935 CCTTCGGAAT
* * * ** * ***
75511945 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
75512009 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
75512024 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
75512089 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
75512104 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
75512157 CATTCCAATG
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 104 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:75520112 original size:79 final size:80
Alignment explanation
Indices: 75519972--75520182 Score: 239
Period size: 79 Copynumber: 2.7 Consensus size: 80
75519962 ACCTTCGAAT
* * * ** * ***
75519972 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
75520036 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
75520051 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTC-GGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
75520115 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
75520130 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
75520183 CATTCCAATG
Statistics
Matches: 108, Mismatches: 21, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
79 66 0.61
80 42 0.39
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Done.