Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 252 of 770
Found at i:75520120 original size:39 final size:40
Alignment explanation
Indices: 75519976--75520182 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
75519966 TCGAATTTAA
* * * * **
75519976 CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGC
1 CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
* * * *
75520016 CCGGTTATAGTGACTCGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
* ** * *
75520056 CCGGATTTGGTAACTTGCACAAATGCCTTC-GGTCTTAGC
1 CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
*
75520095 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * *
75520135 CCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
75520175 CCGGATAT
1 CCGGATAT
75520183 CATTCCAATG
Statistics
Matches: 140, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 32 0.23
40 108 0.77
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:75522164 original size:94 final size:94
Alignment explanation
Indices: 75522050--75522223 Score: 278
Period size: 94 Copynumber: 1.9 Consensus size: 94
75522040 GTTATGTGAG
* *
75522050 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-GATTGAGACAAGGGCTAGTGTAAGACGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTG-TAGAGACAAGGGCCAGTGTAAGACGT
*
75522114 TTCTGGGACATGCATCAGCCACATTACGAT
65 GTCTGGGACATGCATCAGCCACATTACGAT
** *
75522144 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGAGATGAGTGCCAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGAGACAAGGGCCAGTGTAAGACGTG
75522209 TCTGGGACATGCATC
66 TCTGGGACATGCATC
75522224 GGCTAAGCTT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
94 72 0.99
95 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGAGACAAGGGCCAGTGTAAGACGTG
TCTGGGACATGCATCAGCCACATTACGAT
Found at i:75522255 original size:44 final size:44
Alignment explanation
Indices: 75522102--75522267 Score: 138
Period size: 44 Copynumber: 3.6 Consensus size: 44
75522092 GACAAGGGCT
* * * *
75522102 AGTGTAAGACGTTTCTGGGACATGCATCAGC-CA-CATTACGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGC-TT-CG-T-GCC
* * **
75522148 AGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTA-AGCTTCGTGCC
* *
75522196 AGTGTAAGACGTGTCTGGGACATGCATCGGCTAAGCTTCGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGCTTCGTGCC
**
75522240 AGTGTAAGACATGTCTTAGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
75522268 AACACTTATA
Statistics
Matches: 97, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
44 32 0.33
45 2 0.02
46 16 0.16
47 25 0.26
48 18 0.19
49 1 0.01
50 1 0.01
51 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGCTTCGTGCC
Found at i:75525658 original size:46 final size:46
Alignment explanation
Indices: 75525605--75525693 Score: 178
Period size: 46 Copynumber: 1.9 Consensus size: 46
75525595 GGAGGCAGTG
75525605 CTGGATGATTCTAGGCCAATTTTAAGTAGTATAGAGGGAGAAGCTA
1 CTGGATGATTCTAGGCCAATTTTAAGTAGTATAGAGGGAGAAGCTA
75525651 CTGGATGATTCTAGGCCAATTTTAAGTAGTATAGAGGGAGAAG
1 CTGGATGATTCTAGGCCAATTTTAAGTAGTATAGAGGGAGAAG
75525694 TTAAGCAAGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (46 bp):
CTGGATGATTCTAGGCCAATTTTAAGTAGTATAGAGGGAGAAGCTA
Found at i:75529036 original size:15 final size:15
Alignment explanation
Indices: 75529004--75529032 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
75528994 ATTTTTTGTG
75529004 TTTATAATGTGTGAA
1 TTTATAATGTGTGAA
75529019 TTTAT-ATGTGTGAA
1 TTTATAATGTGTGAA
75529033 ATTTTCGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (15 bp):
TTTATAATGTGTGAA
Found at i:75530195 original size:43 final size:43
Alignment explanation
Indices: 75530119--75530292 Score: 213
Period size: 43 Copynumber: 4.0 Consensus size: 43
75530109 GATATGTGAT
** * **
75530119 ATCGATATGTGATTATGTGTAAGATCACATCTGGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * * *
75530162 ATTGATATGTGATTACGTTTACGACCATGTCTGGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * *
75530205 ATCGTTATGTGATTACATGTAAGACCCTGTCTGGGACAGTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * *
75530248 ATCGATATATGATTACATGTAAGACCACGTCTGGGACGTTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
75530291 AT
1 AT
75530293 TGTACGATAT
Statistics
Matches: 111, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 111 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
Found at i:75530486 original size:19 final size:18
Alignment explanation
Indices: 75530462--75530505 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
75530452 GATACTAATT
75530462 ATATATGATGCAAATGAAA
1 ATATAT-ATGCAAATGAAA
* *
75530481 ATATATATGTATATGAAA
1 ATATATATGCAAATGAAA
75530499 AGTATAT
1 A-TATAT
75530506 TCGGCCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.34
Consensus pattern (18 bp):
ATATATATGCAAATGAAA
Found at i:75539259 original size:80 final size:81
Alignment explanation
Indices: 75539147--75539325 Score: 245
Period size: 80 Copynumber: 2.2 Consensus size: 81
75539137 GCTCGATTGT
* * *
75539147 CTTCGGGACATAGCCCGGTTATAGTAATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* *
75539211 TAAC-TCGCACAAATGC
65 TAACTTAGCACAAAAGC
* * *
75539227 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
75539292 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
*
75539308 CTTCGAGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
75539326 ATACCATTCG
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 59 0.69
81 27 0.31
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:75539325 original size:41 final size:40
Alignment explanation
Indices: 75539147--75539327 Score: 206
Period size: 40 Copynumber: 4.5 Consensus size: 40
75539137 GCTCGATTGT
* *
75539147 CTTCGGGACA-TAGCCCGG-TTATAGTAATTCGCACAATTGC
1 CTTCGGGA-ATTAGCCCGGATT-TAGTAACTCGCACAAATGC
75539187 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
75539227 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
75539267 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
* *
75539308 CTTCGAGACTTAGCCCGGAT
1 CTTCGGGAATTAGCCCGGAT
75539328 ACCATTCGAA
Statistics
Matches: 121, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
39 1 0.01
40 91 0.75
41 28 0.23
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:75548179 original size:6 final size:6
Alignment explanation
Indices: 75548168--75548197 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
75548158 TAGCTGAACT
75548168 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
75548198 CAACCCAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:75551305 original size:20 final size:20
Alignment explanation
Indices: 75551280--75551320 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
75551270 TAAGATTGAG
75551280 ATTTAAGTTTAGATAAAGAA
1 ATTTAAGTTTAGATAAAGAA
75551300 ATTTAAGTTTAGATAAAGAA
1 ATTTAAGTTTAGATAAAGAA
75551320 A
1 A
75551321 AAAAAGCGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.34
Consensus pattern (20 bp):
ATTTAAGTTTAGATAAAGAA
Found at i:75553440 original size:19 final size:20
Alignment explanation
Indices: 75553412--75553450 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
75553402 TCTTATTTTT
*
75553412 TATTTGTTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
75553431 TATTTATTTTTATGTTTTAA
1 TATTTATTTTTATGTTTTAA
75553451 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:75553457 original size:19 final size:19
Alignment explanation
Indices: 75553418--75553458 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
75553408 TTTTTATTTG
*
75553418 TTTTTTGTTTTAATATTTA
1 TTTTTTGTTTTAATATGTA
75553437 TTTTTATGTTTTAA-ATGTA
1 TTTTT-TGTTTTAATATGTA
75553456 TTT
1 TTT
75553459 GATTTATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (19 bp):
TTTTTTGTTTTAATATGTA
Found at i:75553468 original size:25 final size:23
Alignment explanation
Indices: 75553431--75553476 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
75553421 TTTGTTTTAA
*
75553431 TATTTATTTTTATGTTTTAAATG
1 TATTTATTTTTATATTTTAAATG
75553454 TATTTGATTTATTATATTTTAAA
1 TATTT-ATTT-TTATATTTTAAA
75553477 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 4 0.20
25 11 0.55
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (23 bp):
TATTTATTTTTATATTTTAAATG
Found at i:75558290 original size:46 final size:45
Alignment explanation
Indices: 75558240--75558415 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
75558230 TGGTTGAGCA
75558240 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
75558286 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
75558333 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
75558379 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75558416 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.61
47 33 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:75558396 original size:93 final size:93
Alignment explanation
Indices: 75558237--75558408 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75558227 GGATGGTTGA
* *
75558237 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75558302 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
75558330 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75558395 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75558409 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:75567338 original size:39 final size:39
Alignment explanation
Indices: 75567295--75567373 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
75567285 ATGTGTGATA
*
75567295 AGTAATTGAGGTATATAATTATTTATATTGTATGAGCTT
1 AGTAATTGAGGTATATAATCATTTATATTGTATGAGCTT
*
75567334 AGTAATTGAGGTATGTAATCATTTATATTGTATGAGCTT
1 AGTAATTGAGGTATATAATCATTTATATTGTATGAGCTT
75567373 A
1 A
75567374 CTAAGTCTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.44
Consensus pattern (39 bp):
AGTAATTGAGGTATATAATCATTTATATTGTATGAGCTT
Found at i:75568045 original size:23 final size:23
Alignment explanation
Indices: 75568019--75568071 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
75568009 CCAAAGTTAG
75568019 TTACATGGCCATGTGACACCCGA
1 TTACATGGCCATGTGACACCCGA
75568042 TTACATGGCCATGTGACACCCGA
1 TTACATGGCCATGTGACACCCGA
75568065 TTACATG
1 TTACATG
75568072 ACATGCAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (23 bp):
TTACATGGCCATGTGACACCCGA
Found at i:75569274 original size:3 final size:3
Alignment explanation
Indices: 75569266--75569290 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
75569256 AGACATTTAC
75569266 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
75569291 ATCCATCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:75569979 original size:94 final size:94
Alignment explanation
Indices: 75569818--75570005 Score: 304
Period size: 94 Copynumber: 2.0 Consensus size: 94
75569808 AACTCTCTGA
* *
75569818 CTTGTAAAACATTATGGTGCAGGTTTCACATGGCCAAGACACACACCCTTGTTCTAGGCCATGTA
1 CTTGTAAAACATTAAGGTGCAGGTTTCACATGGCCAAGACACACACCCTTATTCTAGGCCATGTA
* * * *
75569883 GCACATACAGTTGAGACACATGCTTGTGT
66 GCACACACAGCTGAGACACACGCTCGTGT
*
75569912 CTTGTAAAACATTAAGGTGCAGGTTTCACATGGCCAAGACACACGCCCTTATTCTAGGCCATGTA
1 CTTGTAAAACATTAAGGTGCAGGTTTCACATGGCCAAGACACACACCCTTATTCTAGGCCATGTA
*
75569977 GCACACACGGCTGAGACACACGCTCGTGT
66 GCACACACAGCTGAGACACACGCTCGTGT
75570006 GCTCAATTCT
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 86 1.00
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (94 bp):
CTTGTAAAACATTAAGGTGCAGGTTTCACATGGCCAAGACACACACCCTTATTCTAGGCCATGTA
GCACACACAGCTGAGACACACGCTCGTGT
Found at i:75573146 original size:51 final size:50
Alignment explanation
Indices: 75573069--75573199 Score: 158
Period size: 49 Copynumber: 2.6 Consensus size: 50
75573059 CGGATACCCG
* *
75573069 GTGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTAGTCAAAGCTACC-TCTTCACAAA
* * * * *
75573120 GTGGCCTTCACATAGTACCACACTTGT-GACCAAGTTATCTCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTAGTCAAAGCTACCTCTTCACAAA
* *
75573169 GTGTCCTTGACATAGTACCACACTTG-AGTCA
1 GTGGCCTTCACATAGTACCACACTTGTAGTCA
75573200 CCAGTGACTT
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
49 35 0.51
50 8 0.12
51 25 0.37
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTAGTCAAAGCTACCTCTTCACAAA
Found at i:75579096 original size:30 final size:30
Alignment explanation
Indices: 75579062--75579119 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
75579052 CCTTAACTCT
75579062 AACTTTTGAAAAATTACAATTTTGCCCCTA
1 AACTTTTGAAAAATTACAATTTTGCCCCTA
* * * *
75579092 AACTTTTGCATATTTACACTTTTGCCCC
1 AACTTTTGAAAAATTACAATTTTGCCCC
75579120 AAAGCTCAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTTGAAAAATTACAATTTTGCCCCTA
Found at i:75587646 original size:17 final size:17
Alignment explanation
Indices: 75587624--75587657 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
75587614 GTTGGAGAGA
75587624 AAGAGAAAGCATTTCTC
1 AAGAGAAAGCATTTCTC
75587641 AAGAGAAAGCATTTCTC
1 AAGAGAAAGCATTTCTC
75587658 TTCATCATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (17 bp):
AAGAGAAAGCATTTCTC
Found at i:75589223 original size:16 final size:16
Alignment explanation
Indices: 75589202--75589242 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
75589192 CAAGGTCACC
*
75589202 ATTTGGGTAAGGAAGG
1 ATTTGGGCAAGGAAGG
75589218 ATTTGGGCAAGGAAGG
1 ATTTGGGCAAGGAAGG
*
75589234 ATTTAGGCA
1 ATTTGGGCA
75589243 TGAAATAGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.32, C:0.05, G:0.39, T:0.24
Consensus pattern (16 bp):
ATTTGGGCAAGGAAGG
Found at i:75591210 original size:25 final size:25
Alignment explanation
Indices: 75591181--75591232 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
75591171 AAGAATAATT
**
75591181 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCCGATATTGCCTAATAAA
* *
75591206 TGAATATCCGATATTGCTTAGTAAA
1 TGAATATCCGATATTGCCTAATAAA
75591231 TG
1 TG
75591233 TCAAGCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (25 bp):
TGAATATCCGATATTGCCTAATAAA
Found at i:75595667 original size:29 final size:29
Alignment explanation
Indices: 75595628--75595706 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
75595618 CTTAATAATC
*
75595628 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75595658 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75595687 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75595707 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75597333 original size:40 final size:40
Alignment explanation
Indices: 75597274--75597404 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
75597264 CGGGACTTTA
* * *
75597274 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
75597314 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
75597354 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
75597394 CCCGGATATAA
1 CCCGGATATAA
75597405 TTTCAGCATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:75597437 original size:39 final size:40
Alignment explanation
Indices: 75597291--75597441 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
75597281 ATCACGATTT
* * * *
75597291 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
75597331 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
75597371 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
75597410 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
75597442 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 31 0.32
40 64 0.66
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:75604895 original size:39 final size:39
Alignment explanation
Indices: 75604731--75604899 Score: 213
Period size: 39 Copynumber: 4.4 Consensus size: 39
75604721 NNNNNNNNNN
75604731 GGCTAAGCCCGAAGGCAA-TGTGCGAG---TGATATCCG
1 GGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCG
*
75604766 GGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCG
1 GGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCG
*
75604805 GGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCG
1 GGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCG
* * ** *
75604844 GGTTAAGTCCCGAAGGCATTTGTGCG-GTTACCATAACCG
1 GGCTAAG-CCCGAAGGCAATTGTGCGAGTTATGATATCCG
*
75604883 GGCTATGTCCCGAAGGC
1 GGCTAAG-CCCGAAGGC
75604900 GTTTGAACGA
Statistics
Matches: 119, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
35 18 0.15
36 8 0.07
39 76 0.64
40 17 0.14
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.21
Consensus pattern (39 bp):
GGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCG
Found at i:75604911 original size:79 final size:78
Alignment explanation
Indices: 75604731--75604911 Score: 194
Period size: 79 Copynumber: 2.4 Consensus size: 78
75604721 NNNNNNNNNN
75604731 GGCTAAGCCCGAAGGCAATGTG--CGA---GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCG
1 GGCTAAGCCCGAAGGCAAT-TGAACGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCG
** *
75604791 AGCTATGATATCCG
65 AGCTACCATAACCG
** * *
75604805 GGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GGCTAAGCCCGAAGGCAATTGAACGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
*
75604870 -GTTACCATAACCG
65 AGCTACCATAACCG
* **
75604883 GGCTATGTCCCGAAGGCGTTTGAACGAGT
1 GGCTAAG-CCCGAAGGCAATTGAACGAGT
75604912 AGCTATATCC
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
73 2 0.02
74 19 0.21
75 3 0.03
78 31 0.35
79 34 0.38
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (78 bp):
GGCTAAGCCCGAAGGCAATTGAACGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGA
GCTACCATAACCG
Found at i:75612897 original size:40 final size:38
Alignment explanation
Indices: 75612739--75612930 Score: 240
Period size: 38 Copynumber: 4.9 Consensus size: 38
75612729 TGTGTATGAA
* *
75612739 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAT
* *
75612777 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAT
* *
75612815 TGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGCGAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC-AT
*
75612854 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA-T
* * * * *
75612894 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
75612931 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
38 71 0.51
39 26 0.19
40 41 0.30
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (38 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAT
Found at i:75612966 original size:79 final size:78
Alignment explanation
Indices: 75612756--75612968 Score: 195
Period size: 79 Copynumber: 2.7 Consensus size: 78
75612746 ATTGTGATAT
* * * * *
75612756 CCGGGCTAAGCCCGAAGGCAATGTG--CGAATTGTGATATCCGGGCTAA-GCCCGAAGGCAATGT
1 CCGGGCTAAGCCCGAAGGCGAT-TGAACGAGTAGTGATATCCGGGTTAACTCCCGAAGGCAATGT
* *
75612818 GCGAGATATGATAT
65 GCGAGATATCATAA
** * * *
75612832 CCGGGCTAAGCCCGAAGGCGATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGGGTTAACTCCCGAAGGCA-ATGT
* *
75612897 GCGGGTTATCATAA
65 GCGAGATATCATAA
* *
75612911 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACT-CCGAAGG
1 CCGGGCTAAG-CCCGAAGGCGATTGAACGAGTAG-TGATATCCGGGTT-AACTCCCGAAGG
75612969 TATGTGATTT
Statistics
Matches: 115, Mismatches: 15, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
75 2 0.02
76 21 0.18
77 20 0.17
78 10 0.09
79 33 0.29
80 28 0.24
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGGGTTAACTCCCGAAGGCAATGTG
CGAGATATCATAA
Found at i:75615146 original size:21 final size:20
Alignment explanation
Indices: 75615122--75615190 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 20
75615112 CAAAACAAAT
75615122 AAAGAATAAAATAGAAAAAGG
1 AAAGAATAAAA-AGAAAAAGG
* *
75615143 AAAGAAACAACGAAATGAAATAGAG
1 AAAG-AATAA--AAA-GAAAAAG-G
75615168 AAAGAATAAAAAGAAAAA-G
1 AAAGAATAAAAAGAAAAAGG
75615187 AAAG
1 AAAG
75615191 GAGAAAGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 12
0.71 0.07 0.22
Matches are distributed among these distances:
19 5 0.13
21 9 0.23
22 7 0.18
23 1 0.03
24 12 0.31
25 5 0.13
ACGTcount: A:0.71, C:0.03, G:0.19, T:0.07
Consensus pattern (20 bp):
AAAGAATAAAAAGAAAAAGG
Found at i:75617385 original size:19 final size:20
Alignment explanation
Indices: 75617348--75617386 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
75617338 AAAAGGACAT
75617348 TATGATTATACTATGATATG
1 TATGATTATACTATGATATG
* *
75617368 TATG-TTATATTATTATATG
1 TATGATTATACTATGATATG
75617387 ATTTTTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.51
Consensus pattern (20 bp):
TATGATTATACTATGATATG
Found at i:75618342 original size:20 final size:20
Alignment explanation
Indices: 75618317--75618358 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
75618307 AACATCAAAG
*
75618317 ATAGAAAAGGTACCAGCAAT
1 ATAGAAAAGATACCAGCAAT
75618337 ATAGAAAAGATACCAGCAAT
1 ATAGAAAAGATACCAGCAAT
75618357 AT
1 AT
75618359 CATTAAGAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (20 bp):
ATAGAAAAGATACCAGCAAT
Found at i:75622242 original size:14 final size:15
Alignment explanation
Indices: 75622212--75622244 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
75622202 AACTAACTTA
75622212 TAAACAACATCAACT
1 TAAACAACATCAACT
*
75622227 TAAACAA-ATTAACT
1 TAAACAACATCAACT
75622241 TAAA
1 TAAA
75622245 GGCTCCTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (15 bp):
TAAACAACATCAACT
Found at i:75623658 original size:26 final size:26
Alignment explanation
Indices: 75623605--75623660 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
75623595 GAATAGTAGT
*
75623605 ACAAACATACCTAAATTGATTATGCA
1 ACAAACATACCTAAAGTGATTATGCA
75623631 ACAAACATGACCCTAAAGT-ATTAT-CA
1 ACAAACAT-A-CCTAAAGTGATTATGCA
75623657 ACAA
1 ACAA
75623661 TTTTCTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 14 0.52
27 6 0.22
28 7 0.26
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.23
Consensus pattern (26 bp):
ACAAACATACCTAAAGTGATTATGCA
Found at i:75633152 original size:93 final size:93
Alignment explanation
Indices: 75632990--75633192 Score: 300
Period size: 93 Copynumber: 2.2 Consensus size: 93
75632980 GAGCTTGTTG
* * *
75632990 AGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAATCTGAGTTTAT
1 AGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAATCTAAGTTCAC
75633055 TTATGGATGCGAACGCCCGAGCTCATTA
66 TTATGGATGCGAACGCCCGAGCTCATTA
* ** * * *
75633083 AGTTGAGTCCAAGTTCATGAGATGTAACTAGGTGTCTGAACTCGTTTAGTTGAGTAC-AAGTTCA
1 AGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAAT-CTAAGTTCA
*
75633147 CTTATGGATGCGAACGCCCGAGCTCATTG
65 CTTATGGATGCGAACGCCCGAGCTCATTA
75633176 AGTTGAGTCCGAGTTCA
1 AGTTGAGTCCGAGTTCA
75633193 CTTATAGGCG
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 97 0.99
94 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (93 bp):
AGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAATCTAAGTTCAC
TTATGGATGCGAACGCCCGAGCTCATTA
Found at i:75633191 original size:46 final size:46
Alignment explanation
Indices: 75633025--75633197 Score: 120
Period size: 46 Copynumber: 3.7 Consensus size: 46
75633015 AACTAGGCAT
* * ** * *
75633025 CCGAACTCGTTGAGTTGAATCTGAGTTTATTTATGGATGCGAACGC
1 CCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGC
* * * * *
75633071 CCGAGCTCATTAAGTTGAGTCCAAGTTCA-TGA--GATG-TAACTAGGTGT
1 CCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAAC-----GC
* * * *
75633118 CTGAACTCGTTTAGTTGAGTACAAGTTCACTTATGGATGCGAACGC
1 CCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGC
* *
75633164 CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTAT
1 CCGAACTCATTGAGTTGAGTCCAAGTTCACTTAT
75633198 AGGCGGGTTA
Statistics
Matches: 94, Mismatches: 24, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 2 0.02
46 51 0.54
47 25 0.27
48 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (46 bp):
CCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGC
Found at i:75634590 original size:29 final size:28
Alignment explanation
Indices: 75634519--75634604 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
75634509 TACCTGTATC
* * *
75634519 TGGCCCATTAAGCCCATTCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
75634547 TGGCCCATTATGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
*
75634576 TGGCCCGTTAGGCCCAATCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
75634604 T
1 T
75634605 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 27 0.54
29 23 0.46
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.30
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:75636079 original size:8 final size:8
Alignment explanation
Indices: 75636068--75636104 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
75636058 AAAAAATCAA
75636068 GATTTCAG
1 GATTTCAG
**
75636076 GATTTTTG
1 GATTTCAG
75636084 GATTTCAG
1 GATTTCAG
75636092 GATTTCAG
1 GATTTCAG
75636100 GATTT
1 GATTT
75636105 TTAGGGCTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.22, C:0.08, G:0.24, T:0.46
Consensus pattern (8 bp):
GATTTCAG
Found at i:75639065 original size:29 final size:29
Alignment explanation
Indices: 75639027--75639103 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 29
75639017 ATTCATATTC
* *
75639027 ATATGCCCCATTAGGCCCAAATCACCTAT
1 ATATGGCCCATTAGGCCCAAATCACATAT
* *
75639056 ATATGGCCCATTATGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATAT
* *
75639085 ATATAGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
75639104 GTCACATTCA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATAT
Found at i:75640621 original size:16 final size:16
Alignment explanation
Indices: 75640600--75640632 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
75640590 AAAAATTCAA
75640600 GATTTCAGGATTGTTG
1 GATTTCAGGATTGTTG
*
75640616 GATTTCAGGATTTTTG
1 GATTTCAGGATTGTTG
75640632 G
1 G
75640633 GGCGTTACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.06, G:0.30, T:0.45
Consensus pattern (16 bp):
GATTTCAGGATTGTTG
Found at i:75644026 original size:30 final size:30
Alignment explanation
Indices: 75643990--75644055 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
75643980 TTTAAACGGC
75643990 CACACGTCCGTGTGAACAGGCCGTGTGCCT
1 CACACGTCCGTGTGAACAGGCCGTGTGCCT
*
75644020 CACACGTCCGTGTGAACAGGTCGTGTGCCT
1 CACACGTCCGTGTGAACAGGCCGTGTGCCT
75644050 CACACG
1 CACACG
75644056 GCCTTAGACA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.18, C:0.33, G:0.29, T:0.20
Consensus pattern (30 bp):
CACACGTCCGTGTGAACAGGCCGTGTGCCT
Found at i:75653946 original size:47 final size:47
Alignment explanation
Indices: 75653858--75654078 Score: 195
Period size: 47 Copynumber: 4.7 Consensus size: 47
75653848 GTAAGGTGCT
* * * * **
75653858 GATGCCATGTCCCAGACGTGGTCTGACACTGGCTCATATCTC-AATTC
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCT-ATATCTCGAAGCC
* * *
75653905 AATGCCATGTCCTAGACATGGTCTTACACTAACTATCATCTCGTAGCC
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCTAT-ATCTCGAAGCC
* * * *
75653953 GATG-CATGTCCTAGACAT-GTTTTACACTGGCTTATGTCTCGAGGCC
1 GATGCCATGTCCTAGACATGGTCTTACACTAGC-TATATCTCGAAGCC
* *
75653999 GATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACTGATCTC-AATGCT
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCTA-T-ATCTCGAA-GCC
*
75654045 GATGCCATGTCTTAGACATGGTCTTACACTAGCT
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCT
75654079 CTCATAATGT
Statistics
Matches: 141, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 58 0.41
47 62 0.44
48 18 0.13
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (47 bp):
GATGCCATGTCCTAGACATGGTCTTACACTAGCTATATCTCGAAGCC
Found at i:75654000 original size:46 final size:46
Alignment explanation
Indices: 75653910--75654121 Score: 164
Period size: 46 Copynumber: 4.5 Consensus size: 46
75653900 AATTCAATGC
75653910 CATGTCCTAGACATGGTCTTACACTAACTATCATCTCGTAGCCGATG
1 CATGTCCTAGACAT-GTCTTACACTAACTATCATCTCGTAGCCGATG
* ** *
75653957 CATGTCCTAGACATGTTTTACACTGGCTTAT-GTCTCG-AGGCCGATG
1 CATGTCCTAGACATGTCTTACACTAAC-TATCATCTCGTA-GCCGATG
* * * * *
75654003 CATGTCCCAGACATGTCTTACACTAGC-ACTGATCTC-AATGCTGATG
1 CATGTCCTAGACATGTCTTACACTAACTA-TCATCTCGTA-GCCGATG
* * * * * *
75654049 CCATGTCTTAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCCAATG
1 -CATGTCCTAGACAT-GTCTTACACTAACTATCAT-CTCGTAGCCGATG
* *
75654097 CATGTCCCAGACATGTCTTATACTA
1 CATGTCCTAGACATGTCTTACACTA
75654122 GCCAAAAATA
Statistics
Matches: 133, Mismatches: 22, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 67 0.50
47 41 0.31
48 21 0.16
49 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (46 bp):
CATGTCCTAGACATGTCTTACACTAACTATCATCTCGTAGCCGATG
Found at i:75654506 original size:29 final size:29
Alignment explanation
Indices: 75654463--75654540 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
75654453 TCATATCTTC
* * *
75654463 GGCAAAATGACCATTTTCCCTTAAAGTTT
1 GGCAAAATAACCATTTTACCTTAAACTTT
* *
75654492 GGCAAAATAATCATTTTACCTTAGACTTT
1 GGCAAAATAACCATTTTACCTTAAACTTT
*
75654521 GGGAAAATAACCATTTTACC
1 GGCAAAATAACCATTTTACC
75654541 CCTATGCTCG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (29 bp):
GGCAAAATAACCATTTTACCTTAAACTTT
Found at i:75655484 original size:31 final size:31
Alignment explanation
Indices: 75655446--75655507 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
75655436 AACACATCAT
75655446 GAATCTTTTCTAACTCTGATGGCAACAATAA
1 GAATCTTTTCTAACTCTGATGGCAACAATAA
* *
75655477 GAATCTTTTCTAACTCTGATGGTAGCAATAA
1 GAATCTTTTCTAACTCTGATGGCAACAATAA
75655508 TCTATATGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.34
Consensus pattern (31 bp):
GAATCTTTTCTAACTCTGATGGCAACAATAA
Found at i:75662660 original size:21 final size:21
Alignment explanation
Indices: 75662634--75662673 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
75662624 CACTTGACAT
*
75662634 AGGGGCACACGCTCATGTGAA
1 AGGGGCACACGCCCATGTGAA
75662655 AGGGGCACACGCCCATGTG
1 AGGGGCACACGCCCATGTG
75662674 GCCAATTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.28, G:0.35, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGAA
Found at i:75663946 original size:46 final size:46
Alignment explanation
Indices: 75663871--75664075 Score: 170
Period size: 46 Copynumber: 4.4 Consensus size: 46
75663861 GCCATGTTCG
* * *
75663871 AGACATGGTCTTACACTGACTAGCATCTCGTA-GTCGACGCATGTCCC
1 AGACATGGTCTTACACTGGCTA-CGTCTCG-AGGTCGATGCATGTCCC
*
75663918 AGACAT-GTCTTACACTGGCTTACGTCTCGAGGGT-GATGCATGTCCT
1 AGACATGGTCTTACACTGGC-TACGTCTCGA-GGTCGATGCATGTCCC
* * *
75663964 AGACAT-GTCTTACACTAGC-ACTTGTCTCAATGTCGATGCCATGTCCC
1 AGACATGGTCTTACACTGGCTAC--GTCTCGAGGTCGATG-CATGTCCC
* * * * *
75664011 AGACATGGTCTTACACTAGAACT-TGTCTCAATGTCGATGCCATGTCTC
1 AGACATGGTCTTACACT-G-GCTACGTCTCGAGGTCGATG-CATGTCCC
75664059 AGACATGGTCTTACACT
1 AGACATGGTCTTACACT
75664076 AGCTCTCACA
Statistics
Matches: 135, Mismatches: 12, Indels: 21
0.80 0.07 0.12
Matches are distributed among these distances:
44 2 0.01
45 3 0.02
46 56 0.41
47 23 0.17
48 50 0.37
50 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (46 bp):
AGACATGGTCTTACACTGGCTACGTCTCGAGGTCGATGCATGTCCC
Found at i:75664035 original size:48 final size:46
Alignment explanation
Indices: 75663910--75664077 Score: 207
Period size: 48 Copynumber: 3.6 Consensus size: 46
75663900 GTAGTCGACG
* **
75663910 CATGTCCCAGACATGTCTTACACT-GGCTTACGTCTCGAGGGT-GATG-
1 CATGTCCCAGACATGTCTTACACTAGACTT--GTCTC-AATGTCGATGC
*
75663956 CATGTCCTAGACATGTCTTACACTAGCACTTGTCTCAATGTCGATGC
1 CATGTCCCAGACATGTCTTACACTAG-ACTTGTCTCAATGTCGATGC
75664003 CATGTCCCAGACATGGTCTTACACTAGAACTTGTCTCAATGTCGATGC
1 CATGTCCCAGACAT-GTCTTACACTAG-ACTTGTCTCAATGTCGATGC
*
75664051 CATGTCTCAGACATGGTCTTACACTAG
1 CATGTCCCAGACAT-GTCTTACACTAG
75664078 CTCTCACAAA
Statistics
Matches: 110, Mismatches: 7, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
45 3 0.03
46 32 0.29
47 14 0.13
48 61 0.55
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGACTTGTCTCAATGTCGATGC
Found at i:75665873 original size:40 final size:40
Alignment explanation
Indices: 75665814--75666021 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
75665804 CAATTGAATG
* * * *
75665814 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
75665854 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
75665894 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
75665934 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
75665974 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
75666014 ATATCCGG
1 ATATCCGG
75666022 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:75665952 original size:80 final size:80
Alignment explanation
Indices: 75665816--75666021 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
75665806 ATTGAATGAT
* * ** * * *
75665816 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
75665880 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
75665896 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
75665961 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
75665976 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
75666022 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:75673996 original size:39 final size:40
Alignment explanation
Indices: 75673856--75674061 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 40
75673846 CAATTGAATG
* * ** * **
75673856 ATAT-CGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * **
75673895 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGT-GACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTCG-TT
* *
75673935 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
75673975 AAATCC-GGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
75674014 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
75674054 ATATCCGG
1 ATATCCGG
75674062 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 23, Indels: 11
0.80 0.13 0.06
Matches are distributed among these distances:
39 42 0.30
40 91 0.66
41 5 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:75675949 original size:2 final size:2
Alignment explanation
Indices: 75675944--75675974 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
75675934 ACATAAAAGC
75675944 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
75675975 ATTTACATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:75691339 original size:64 final size:64
Alignment explanation
Indices: 75691258--75691441 Score: 178
Period size: 67 Copynumber: 2.8 Consensus size: 64
75691248 AGACATTATG
* *
75691258 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTATACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTATACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * * *
75691322 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTATACCATGTAGACAAGAGAGCTACGAGAT
75691387 AA
63 AA
* * *
75691389 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGT-TCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTAT-ACCATGTAG-ACAAGAGAGC
75691442 CGAACTATAT
Statistics
Matches: 96, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.17
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTATACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:75692535 original size:2 final size:2
Alignment explanation
Indices: 75692528--75692556 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
75692518 TCATGACATG
75692528 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
75692557 GAGACTAGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:75705676 original size:46 final size:47
Alignment explanation
Indices: 75705601--75705712 Score: 147
Period size: 46 Copynumber: 2.4 Consensus size: 47
75705591 TAAGGTGTCG
* *
75705601 ATGCCATGTCCCAGACATGTCTAAAACTAGC-TTACGTCTCAAGGCCA
1 ATGCCATGTCCCAGACATGTATAAAACTAGCACT-CGTCTCAAGGCCA
* * * *
75705648 ATG-CATGTCCAAGACATGTATTACACTAGCACTCGTCTCAATGCCA
1 ATGCCATGTCCCAGACATGTATAAAACTAGCACTCGTCTCAAGGCCA
75705694 ATGCCATGTCCCAGACATG
1 ATGCCATGTCCCAGACATG
75705713 GTCTTCCACT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 38 0.68
47 18 0.32
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGTATAAAACTAGCACTCGTCTCAAGGCCA
Found at i:75708583 original size:40 final size:39
Alignment explanation
Indices: 75708526--75708709 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
75708516 TCGAATGATG
* * * *
75708526 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
75708566 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
75708606 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
** *
75708646 T-CGGGTTAAGTCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
75708685 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGT-CCGAAGGCATTTG
75708710 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
38 25 0.19
39 17 0.13
40 79 0.61
41 8 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75708709 original size:78 final size:80
Alignment explanation
Indices: 75708526--75708709 Score: 216
Period size: 78 Copynumber: 2.3 Consensus size: 80
75708516 TCGAATGATG
* *
75708526 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
75708591 GTGCGAGTTACTAAA
66 GTGCGAGCTACTAAA
* * * **
75708606 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAAT-CGGGTTAAG-TCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGG-ATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAT
75708667 TTGTGCGAGCTACTATAA
64 TTGTGCGAGCTACTA-AA
*
75708685 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGG-ATTTG
75708710 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
77 1 0.01
78 45 0.51
79 9 0.10
80 26 0.29
81 8 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGCTACTAAA
Found at i:75708716 original size:78 final size:78
Alignment explanation
Indices: 75708573--75708742 Score: 193
Period size: 78 Copynumber: 2.2 Consensus size: 78
75708563 ATATCCGGAC
* **
75708573 TAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAG-TCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG
*
75708638 TTA-CTAAATCGGGT
65 -TAGCTAAATCCGGT
* * *
75708652 TAAGTCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGA
1 TAAGTCCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGA
*
75708715 GTAGCTATATCCGGT
64 GTAGCTAAATCCGGT
*
75708730 TAAACTCCGAAGG
1 T-AAGTCCGAAGG
75708743 TACGTGATTC
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
77 3 0.04
78 59 0.76
79 16 0.21
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (78 bp):
TAAGTCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGT
AGCTAAATCCGGT
Found at i:75716875 original size:24 final size:26
Alignment explanation
Indices: 75716805--75716856 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
75716795 AACAGTAACA
75716805 TCAAGTTAGCCAAAAAACAATGACCT
1 TCAAGTTAGCCAAAAAACAATGACCT
75716831 TCAAGTTAGCCAAAAAACAATGACCT
1 TCAAGTTAGCCAAAAAACAATGACCT
75716857 CTAATTGCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.23, G:0.12, T:0.19
Consensus pattern (26 bp):
TCAAGTTAGCCAAAAAACAATGACCT
Found at i:75718744 original size:21 final size:21
Alignment explanation
Indices: 75718709--75718749 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
75718699 CGCTTGACAT
* *
75718709 AGGGGCACACGCCCATGTGGA
1 AGGGGCACACACCCACGTGGA
*
75718730 AGGGGCATACACCCACGTGG
1 AGGGGCACACACCCACGTGG
75718750 CCAATTCCAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.37, T:0.10
Consensus pattern (21 bp):
AGGGGCACACACCCACGTGGA
Found at i:75730778 original size:43 final size:43
Alignment explanation
Indices: 75730729--75730811 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 43
75730719 TGATATATCT
* *
75730729 AGCATCCGAA-CTCGTTGAGTGGTCCGAGTTCATTATGGATGCG
1 AGCATCC-AAGCTCGTAGAGTGGTCCGAGTTCATAATGGATGCG
*
75730772 AGCATCCAAGCTCGTAGAGTGGTCTGAGTTCATAATGGAT
1 AGCATCCAAGCTCGTAGAGTGGTCCGAGTTCATAATGGAT
75730812 ACGATACATG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 2 0.06
43 34 0.94
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (43 bp):
AGCATCCAAGCTCGTAGAGTGGTCCGAGTTCATAATGGATGCG
Found at i:75740341 original size:40 final size:39
Alignment explanation
Indices: 75740296--75740503 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
75740286 CGGAATACAA
*
75740296 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
75740336 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
75740376 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
75740416 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
75740456 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
75740496 CCGGATAT
1 CCGGATAT
75740504 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:75740436 original size:80 final size:80
Alignment explanation
Indices: 75740296--75740502 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
75740286 CGGAATACAA
* * *
75740296 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
75740360 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
75740376 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
75740440 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
75740456 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
75740503 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:75747263 original size:40 final size:39
Alignment explanation
Indices: 75747218--75747344 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
75747208 CGGAATATAA
75747218 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
75747258 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75747298 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
75747338 CCGGATA
1 CCGGATA
75747345 AATTTCCAGC
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:75751589 original size:40 final size:39
Alignment explanation
Indices: 75751544--75751751 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
75751534 CGGAATACAA
*
75751544 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
75751584 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
75751624 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
75751664 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
75751704 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
75751744 CCGGATAT
1 CCGGATAT
75751752 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:75751684 original size:80 final size:80
Alignment explanation
Indices: 75751544--75751750 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
75751534 CGGAATACAA
* * *
75751544 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
75751608 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
75751624 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
75751688 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
75751704 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
75751751 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:75755025 original size:29 final size:29
Alignment explanation
Indices: 75754986--75755064 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
75754976 CTTAATAATC
*
75754986 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75755016 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75755045 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75755065 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75756202 original size:17 final size:18
Alignment explanation
Indices: 75756165--75756202 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
75756155 CACTTTTTTT
75756165 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
75756184 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
75756201 TT
1 TT
75756203 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:75762815 original size:29 final size:29
Alignment explanation
Indices: 75762776--75762854 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
75762766 CTTAATAATC
*
75762776 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75762806 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75762835 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75762855 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75764474 original size:46 final size:46
Alignment explanation
Indices: 75764333--75764483 Score: 157
Period size: 46 Copynumber: 3.3 Consensus size: 46
75764323 GCTGTCACAA
* *
75764333 AACGAGTTCGGACGTTCGCATCCATTAGTGAACTCGGACTCAACTC
1 AACGAGTTCGGACGTCCGCATCCATAAGTGAACTCGGACTCAACTC
* * * * * *
75764379 AACGAGCTT-GGATGCCTCGTTATATC-TCACG-G-ACTCGGACTCAATTC
1 AACGAG-TTCGGACGTC-CG-CAT-CCAT-AAGTGAACTCGGACTCAACTC
75764426 AACGAGTTCGGACGTCCGCATCCATAAGTGAACTCGGACTCAACTC
1 AACGAGTTCGGACGTCCGCATCCATAAGTGAACTCGGACTCAACTC
75764472 AACGAGTTCGGA
1 AACGAGTTCGGA
75764484 TGCCCAAATA
Statistics
Matches: 82, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
44 3 0.04
45 4 0.05
46 40 0.49
47 29 0.35
48 4 0.05
49 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (46 bp):
AACGAGTTCGGACGTCCGCATCCATAAGTGAACTCGGACTCAACTC
Found at i:75779021 original size:29 final size:29
Alignment explanation
Indices: 75778989--75779061 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
75778979 TGAAAAGTAT
* * *
75778989 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
75779018 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
75779047 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
75779062 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:75783015 original size:28 final size:28
Alignment explanation
Indices: 75782975--75783035 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
75782965 AAATTTGTGT
75782975 ATTTTGGTGTTTTATGATAGAATATGAG
1 ATTTTGGTGTTTTATGATAGAATATGAG
75783003 ATTTTGGTGTTTTATGATAGAATATGAG
1 ATTTTGGTGTTTTATGATAGAATATGAG
*
75783031 GTTTT
1 ATTTT
75783036 AAATTATGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.26, C:0.00, G:0.25, T:0.49
Consensus pattern (28 bp):
ATTTTGGTGTTTTATGATAGAATATGAG
Found at i:75783995 original size:49 final size:48
Alignment explanation
Indices: 75783932--75784162 Score: 236
Period size: 49 Copynumber: 4.7 Consensus size: 48
75783922 GTGAGGTGCA
* *** *
75783932 TGTGTAGTAC-AAGTGTAGGCTACTATACGTACCAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAAA-TGTGGTCACG
* *
75783980 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAAAT-G-T-GGTCACG
*
75784030 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT-TGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC--AAAATGTGGTCACG
* * *
75784079 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT-TGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC--AAAATGTGGTCACG
* * *
75784128 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
75784163 GATAGCTTTG
Statistics
Matches: 161, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
47 2 0.01
48 13 0.08
49 104 0.65
50 40 0.25
53 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAAATGTGGTCACG
Found at i:75784038 original size:50 final size:49
Alignment explanation
Indices: 75783975--75784153 Score: 286
Period size: 49 Copynumber: 3.6 Consensus size: 49
75783965 AAAACTGTGA
* * **
75783975 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GG
75784025 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
75784074 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
* * *
75784123 TCGCATGTGTAGTACTATGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
75784154 TGCGTACCAG
Statistics
Matches: 122, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
49 79 0.65
50 43 0.35
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
Found at i:75787441 original size:15 final size:14
Alignment explanation
Indices: 75787421--75787474 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
75787411 GTATCTTGGG
75787421 TTTCTTTACTCTGGA
1 TTTCTTTA-TCTGGA
*
75787436 TTTCTTTATTCTGGG
1 TTTCTTTA-TCTGGA
*
75787451 TTTCTCTATCTTGGA
1 TTTCTTTATC-TGGA
*
75787466 TTTATTTAT
1 TTTCTTTAT
75787475 TCGATTTTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 2 0.06
15 30 0.94
ACGTcount: A:0.13, C:0.15, G:0.13, T:0.59
Consensus pattern (14 bp):
TTTCTTTATCTGGA
Found at i:75787453 original size:30 final size:30
Alignment explanation
Indices: 75787417--75787476 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
75787407 TATCGTATCT
* *
75787417 TGGGTTTCTTTA-CTCTGGATTTCTTTATTC
1 TGGGTTTCTCTATCT-TGGATTTATTTATTC
75787447 TGGGTTTCTCTATCTTGGATTTATTTATTC
1 TGGGTTTCTCTATCTTGGATTTATTTATTC
75787477 GATTTTCTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.12, C:0.15, G:0.17, T:0.57
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGGATTTATTTATTC
Found at i:75791170 original size:40 final size:40
Alignment explanation
Indices: 75791126--75791311 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
75791116 GCTACTCGTT
* * *
75791126 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
75791166 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
75791206 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
75791246 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
75791287 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75791312 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:75798425 original size:40 final size:40
Alignment explanation
Indices: 75798342--75798494 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
75798332 TCGAATGATG
* *
75798342 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
75798382 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* * **
75798422 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
75798463 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
75798495 CGCTATATCC
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
39 2 0.02
40 79 0.86
41 11 0.12
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:75802466 original size:40 final size:40
Alignment explanation
Indices: 75802422--75802607 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
75802412 GCTACTCGTT
* * *
75802422 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
75802462 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
75802502 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
75802542 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
75802583 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75802608 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 114 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:75812187 original size:246 final size:246
Alignment explanation
Indices: 75811752--75812244 Score: 923
Period size: 246 Copynumber: 2.0 Consensus size: 246
75811742 CTACCACAAT
75811752 AATTTAAAAGGCCTTCATCCAAGCACCCAGGGTTTTATTAACTTAAAACTAAACTTTTTGCTAAA
1 AATTTAAAAGGCCTTCATCCAAGCACCCAGGGTTTTATTAACTTAAAACTAAACTTTTTGCTAAA
75811817 GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCTCTCAGGACCCTTAACTACTTGAGTAGACATT
66 GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCTCTCAGGACCCTTAACTACTTGAGTAGACATT
* *
75811882 TAATTGTGTCATTTCCTGACACAATTAAATACTTATTTACAACCTCCTTACGGACCCACACTAAA
131 TAATTGTGTCATTTCCTGACACAATTAAATACTTATATACAACCTCCTTACGAACCCACACTAAA
* *
75811947 GGCCCAATACTTCTAGGCCCAAATTTGGGGTGTTACAATCTACCCCCTTAA
196 GGCCCAATACTTCTAGGCCAAAATTTGGGGCGTTACAATCTACCCCCTTAA
*
75811998 AATTTAAAAGGCCTTCATCCATGCACCCAGGGTTTTATTAACTTAAAACTAAACTTTTTGCTAAA
1 AATTTAAAAGGCCTTCATCCAAGCACCCAGGGTTTTATTAACTTAAAACTAAACTTTTTGCTAAA
75812063 GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCTCTCAGGACCCTTAACTACTTGAGTAGACATT
66 GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCTCTCAGGACCCTTAACTACTTGAGTAGACATT
* *
75812128 TAATTGTGTCATTTCCTTACACAATTAAATACTTATATACAACCTCCTTATGAACCCACACTAAA
131 TAATTGTGTCATTTCCTGACACAATTAAATACTTATATACAACCTCCTTACGAACCCACACTAAA
75812193 GGCCCAATACTTCTAGGCCAAAATTTGGGGCGTTACAATCTACCCCCTTAA
196 GGCCCAATACTTCTAGGCCAAAATTTGGGGCGTTACAATCTACCCCCTTAA
75812244 A
1 A
75812245 GAAATTTCGT
Statistics
Matches: 240, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
246 240 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.30
Consensus pattern (246 bp):
AATTTAAAAGGCCTTCATCCAAGCACCCAGGGTTTTATTAACTTAAAACTAAACTTTTTGCTAAA
GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCTCTCAGGACCCTTAACTACTTGAGTAGACATT
TAATTGTGTCATTTCCTGACACAATTAAATACTTATATACAACCTCCTTACGAACCCACACTAAA
GGCCCAATACTTCTAGGCCAAAATTTGGGGCGTTACAATCTACCCCCTTAA
Found at i:75815250 original size:17 final size:19
Alignment explanation
Indices: 75815230--75815268 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
75815220 TGGGCCCATG
75815230 GGCCCA-TTGGCCCA-CAT
1 GGCCCACTTGGCCCATCAT
75815247 GGCCCATCTTGGCCCATCAT
1 GGCCCA-CTTGGCCCATCAT
75815267 GG
1 GG
75815269 TACAAAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
19 8 0.42
20 5 0.26
ACGTcount: A:0.15, C:0.38, G:0.26, T:0.21
Consensus pattern (19 bp):
GGCCCACTTGGCCCATCAT
Found at i:75828006 original size:54 final size:54
Alignment explanation
Indices: 75827948--75828198 Score: 209
Period size: 54 Copynumber: 4.6 Consensus size: 54
75827938 AGGATACCAA
* * *
75827948 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAATGCAAGGAAATCAT
1 GTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTACAAGGCAACGAAATCAT
*
75828002 GTAAGACCATGTCAAGACATGGCATTGGTAAGTTTTACAAGGCAACGAAATCAT
1 GTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTACAAGGCAACGAAATCAT
** * * * *** * ***
75828056 GTAAGACCATGTTAAGATATGGCATTGATAAACTACGATAAGGCGAA-GATCCCAT
1 GTAAGACCATGCCAAGACATGGCATTGGT-AAGTTTTACAAGGC-AACGAAATCAT
* * * * * * * * * * *
75828111 GTACGACCATGCTAAGGCATGGCAATGGTGAG-TTCATAAGGCAAGGATACCAC
1 GTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTACAAGGCAACGAAATCAT
* *
75828164 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTT
1 GTAAGACCATGCCAAGACATGGCATTGGTAAGTTT
75828199 GAAAAGGAAA
Statistics
Matches: 160, Mismatches: 33, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
52 2 0.01
53 40 0.25
54 79 0.49
55 37 0.23
56 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
GTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTACAAGGCAACGAAATCAT
Found at i:75831526 original size:40 final size:39
Alignment explanation
Indices: 75831460--75831610 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
75831450 AAATTGAATG
* * *
75831460 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
75831499 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
75831539 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
75831579 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
75831611 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:75831624 original size:40 final size:39
Alignment explanation
Indices: 75831497--75831626 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
75831487 ATGCTGGAAA
* *
75831497 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
75831537 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
75831577 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
75831617 TTATATCCGG
1 TTATATCCGG
75831627 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:75839563 original size:39 final size:39
Alignment explanation
Indices: 75839482--75839647 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 39
75839472 AAATTGAATG
* *
75839482 ATATCCGGGCTAAG-CCCGAAGACAATTATGC--TGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGG---TT
* *
75839521 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
**
75839560 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTGGTT
* * *
75839600 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GTGGTT
75839640 ATATCCGG
1 ATATCCGG
75839648 TTATATTCCG
Statistics
Matches: 106, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.40
40 56 0.53
41 2 0.02
42 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
Found at i:75842770 original size:17 final size:17
Alignment explanation
Indices: 75842750--75842806 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
75842740 CAACTCATGA
*
75842750 AAAATAATAGTTCATAC
1 AAAATAATAATTCATAC
75842767 AAAAT-ATCAATTCATAC
1 AAAATAAT-AATTCATAC
** * *
75842784 CGAATAAAAATTCATGC
1 AAAATAATAATTCATAC
75842801 AAAATA
1 AAAATA
75842807 GCAGTTCATA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
16 2 0.06
17 28 0.90
18 1 0.03
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.26
Consensus pattern (17 bp):
AAAATAATAATTCATAC
Found at i:75848905 original size:37 final size:36
Alignment explanation
Indices: 75848855--75848941 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
75848845 TACAAAGTCT
75848855 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
75848891 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
75848928 TCACCCGGAACATA
1 T-ACCCGG-ACATA
75848942 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:75849054 original size:49 final size:49
Alignment explanation
Indices: 75848990--75849221 Score: 302
Period size: 49 Copynumber: 4.5 Consensus size: 49
75848980 ATTCACATTA
* * *
75848990 GCCATTCGGCTTTATCACATATATATACACTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
75849039 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGGCCATTAGGTCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCA-------C-----GTCG
75849100 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
* * *
75849149 GCCATTAGGCCTTATCACATATATATACATTTTCACATCCATCACATTG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
75849198 GCCATTAGGCCTTATCACATATAT
1 GCCATTAGGCCTTATCACATATAT
75849222 TATTATGTAC
Statistics
Matches: 165, Mismatches: 6, Indels: 24
0.85 0.03 0.12
Matches are distributed among these distances:
49 115 0.70
54 1 0.01
56 1 0.01
61 48 0.29
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.34
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
Found at i:75849101 original size:12 final size:12
Alignment explanation
Indices: 75849084--75849108 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75849074 CATTCATCAC
75849084 GTCGGCCATTAG
1 GTCGGCCATTAG
75849096 GTCGGCCATTAG
1 GTCGGCCATTAG
75849108 G
1 G
75849109 CCTTATCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GTCGGCCATTAG
Found at i:75849122 original size:110 final size:110
Alignment explanation
Indices: 75848990--75849206 Score: 380
Period size: 110 Copynumber: 2.0 Consensus size: 110
75848980 ATTCACATTA
* *
75848990 GCCATTCGGCTTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATC
* *
75849055 ACATATATATACATTTTCACATTCATCACGTCGGCCATTAGGTCG
66 ACATATATATACATTTTCACATCCATCACATCGGCCATTAGGTCG
*
75849100 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATC
*
75849165 ACATATATATACATTTTCACATCCATCACATTGGCCATTAGG
66 ACATATATATACATTTTCACATCCATCACATCGGCCATTAGG
75849207 CCTTATCACA
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
110 101 1.00
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.34
Consensus pattern (110 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATC
ACATATATATACATTTTCACATCCATCACATCGGCCATTAGGTCG
Found at i:75849130 original size:61 final size:61
Alignment explanation
Indices: 75849035--75849157 Score: 246
Period size: 61 Copynumber: 2.0 Consensus size: 61
75849025 CATTCATCAC
75849035 GTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGGCCATTAG
1 GTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGGCCATTAG
75849096 GTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGGCCATTAG
1 GTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGGCCATTAG
75849157 G
1 G
75849158 CCTTATCACA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (61 bp):
GTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGGCCATTAG
Found at i:75852232 original size:21 final size:21
Alignment explanation
Indices: 75852208--75852249 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
75852198 TTCCAAGCAA
*
75852208 AAAGGG-GCACACGCCTGTGTG
1 AAAGGGTG-ACACGCCCGTGTG
75852229 AAAGGGTGACACGCCCGTGTG
1 AAAGGGTGACACGCCCGTGTG
75852250 TCTTCTTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.24, C:0.24, G:0.38, T:0.14
Consensus pattern (21 bp):
AAAGGGTGACACGCCCGTGTG
Found at i:75853602 original size:48 final size:48
Alignment explanation
Indices: 75853469--75853882 Score: 266
Period size: 48 Copynumber: 8.6 Consensus size: 48
75853459 GTAAATTGTT
* * * * * *
75853469 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGAC
1 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCGTATCAATGCC
* * * *
75853517 GAGGCCATGTACC-AGACATGGCCTTACACTAGCTCTCGTCTCAATGCC
1 GATGCCATGT-CCTAGACATGGTCTTACACTGGCTCTCGTATCAATGCC
** * * *
75853565 GATGCCATGTCCTAGACATGGTCTTACTTTGGGTCTCGTAACATTGCC
1 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCGTATCAATGCC
* * * * * *
75853613 GATGCGATGT-TTCAAACATGGTCTTACACTGGCTCTCATAACATTGCC
1 GATGCCATGTCCT-AGACATGGTCTTACACTGGCTCTCGTATCAATGCC
* * * * * *
75853661 GATGCCATATTCC-AAACATGGTCTTACACTGGCTCTCATAACATTGTC
1 GATGCCAT-GTCCTAGACATGGTCTTACACTGGCTCTCGTATCAATGCC
* * * * * * *
75853709 GATGCCATGTTCC-AAACGTGATCTTACACTAGCTCTCATAACATTGCC
1 GATGCCATG-TCCTAGACATGGTCTTACACTGGCTCTCGTATCAATGCC
* * * * * * * * **
75853757 AATGCCATGTTCC-AAACAAGCTCTTACACTGGTTCTCATAACATTATC
1 GATGCCATG-TCCTAGACATGGTCTTACACTGGCTCTCGTATCAATGCC
* * * *
75853805 GATGCCATGTTCC-AAACATGGTCTTACACTGGCTCTCATAACATTGCC
1 GATGCCATG-TCCTAGACATGGTCTTACACTGGCTCTCGTATCAATGCC
* *
75853853 GATGCCATGTTCC-AAATATGGTCTTACACT
1 GATGCCATG-TCCTAGACATGGTCTTACACT
75853883 AGCACACATA
Statistics
Matches: 312, Mismatches: 48, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
47 3 0.01
48 306 0.98
49 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCGTATCAATGCC
Found at i:75853633 original size:96 final size:96
Alignment explanation
Indices: 75853469--75853882 Score: 497
Period size: 96 Copynumber: 4.3 Consensus size: 96
75853459 GTAAATTGTT
* * * ** ** * * * *
75853469 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGACGAGGCCATGTACCAGAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGTCGATGCCATGTTCCAAAC
* * ** *
75853534 ATGGCCTTACACTAGCTCTCGTCTCAATGCC
66 ATGGTCTTACACTAGCTCTCATAACATTGCC
* ** * * * * *
75853565 GATGCCATG-TCCTAGACATGGTCTTACTTTGGGTCTCGTAACATTGCCGATGCGATGTTTCAAA
1 GATGCCATGTTCC-AAACATGGTCTTACACTGGCTCTCATAACATTGTCGATGCCATGTTCCAAA
*
75853629 CATGGTCTTACACTGGCTCTCATAACATTGCC
65 CATGGTCTTACACTAGCTCTCATAACATTGCC
*
75853661 GATGCCATATTCCAAACATGGTCTTACACTGGCTCTCATAACATTGTCGATGCCATGTTCCAAAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGTCGATGCCATGTTCCAAAC
* *
75853726 GTGATCTTACACTAGCTCTCATAACATTGCC
66 ATGGTCTTACACTAGCTCTCATAACATTGCC
* * * * *
75853757 AATGCCATGTTCCAAACAAGCTCTTACACTGGTTCTCATAACATTATCGATGCCATGTTCCAAAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGTCGATGCCATGTTCCAAAC
*
75853822 ATGGTCTTACACTGGCTCTCATAACATTGCC
66 ATGGTCTTACACTAGCTCTCATAACATTGCC
*
75853853 GATGCCATGTTCCAAATATGGTCTTACACT
1 GATGCCATGTTCCAAACATGGTCTTACACT
75853883 AGCACACATA
Statistics
Matches: 269, Mismatches: 47, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
95 2 0.01
96 264 0.98
97 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (96 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGTCGATGCCATGTTCCAAAC
ATGGTCTTACACTAGCTCTCATAACATTGCC
Found at i:75853734 original size:144 final size:144
Alignment explanation
Indices: 75853470--75853885 Score: 485
Period size: 144 Copynumber: 2.9 Consensus size: 144
75853460 TAAATTGTTG
* * * ** ** * * *
75853470 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGACGAGGCCATGTACCAGACA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGACGATGCCATGTTCCAAACA
* * * ** * * * ** * *
75853535 TGGCCTTACACTAGCTCTCGTCTCAATGCCGATGCCATG-TCCTAGACATGGTCTTACTTTGGGT
66 TGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTTCC-AAACATGATCTTACACTAGCT
* *
75853599 CTCGTAACATTGCCG
130 CTCATAACATTGCCA
* * * *
75853614 ATGCGATGTTTCAAACATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATATTCCAAACA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGACGATGCCATGTTCCAAACA
* *
75853679 TGGTCTTACACTGGCTCTCATAACATTGTCGATGCCATGTTCCAAACGTGATCTTACACTAGCTC
66 TGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTTCCAAACATGATCTTACACTAGCTC
75853744 TCATAACATTGCCA
131 TCATAACATTGCCA
* * *
75853758 ATGCCATGTTCCAAACAAGCTCTTACACTGGTTCTCATAACATT-ATCGATGCCATGTTCCAAAC
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGA-CGATGCCATGTTCCAAAC
* *
75853822 ATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTTCCAAATATGGTCTTACACTAGC
65 ATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTTCCAAACATGATCTTACACTAGC
75853886 ACACATATCA
Statistics
Matches: 229, Mismatches: 41, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
144 226 0.99
145 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (144 bp):
ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGACGATGCCATGTTCCAAACA
TGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTTCCAAACATGATCTTACACTAGCTC
TCATAACATTGCCA
Found at i:75858974 original size:21 final size:20
Alignment explanation
Indices: 75858926--75858974 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
75858916 GGGCACACGC
*
75858926 CCGTGTGAAAGGGCGACCTT
1 CCGTGTGAAAGGGCGACCGT
*
75858946 CCTATGTGAAAGGGCGACCCGT
1 CC-GTGTGAAAGGGCGA-CCGT
75858968 CCGTGTG
1 CCGTGTG
75858975 TCTTCTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 17 0.71
22 5 0.21
ACGTcount: A:0.18, C:0.27, G:0.35, T:0.20
Consensus pattern (20 bp):
CCGTGTGAAAGGGCGACCGT
Found at i:75871743 original size:30 final size:30
Alignment explanation
Indices: 75871707--75871837 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
75871697 GACAAGATTG
* * * * *
75871707 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
75871737 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
75871765 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
75871795 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
75871824 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75871838 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:75871798 original size:58 final size:58
Alignment explanation
Indices: 75871707--75871837 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
75871697 GACAAGATTG
* * * * * *
75871707 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
75871765 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
75871824 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75871838 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:75873521 original size:40 final size:40
Alignment explanation
Indices: 75873455--75873598 Score: 121
Period size: 40 Copynumber: 3.6 Consensus size: 40
75873445 AAATTGAATG
* ** *
75873455 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
* * ***
75873494 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
* * ** *
75873534 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCAAGAAACT
* *
75873574 CTATTCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
75873599 TTTGTGCACA
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 16 0.19
40 70 0.81
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
Found at i:75873599 original size:40 final size:39
Alignment explanation
Indices: 75873493--75873606 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 39
75873483 TGCTGGAAAT
* **
75873493 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTCAC
* *
75873533 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTCAC
* *
75873573 TCTATTCGGGCTAAGACCCGAAGGCATTTGTGCA
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCA
75873607 CATGGTTATA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.05
40 59 0.92
41 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTCAC
Found at i:75876910 original size:55 final size:55
Alignment explanation
Indices: 75876841--75876963 Score: 140
Period size: 55 Copynumber: 2.2 Consensus size: 55
75876831 CAAGCCCCAT
* * * *
75876841 CCCGTGTTATTTTAACAAGTTCGACCACGGGTGTTAGACACGGGCGTGTC-ACACG
1 CCCGTGTTGTTTTAACAAGTTCGACCAAGGGTCTTACACACGGGCGTGTCGA-ACG
* * * * * *
75876896 CCCGTGCTGTTTTAACACGTTCGTCCAAGGTTCTTCCACACGTGCGTGTCGAACG
1 CCCGTGTTGTTTTAACAAGTTCGACCAAGGGTCTTACACACGGGCGTGTCGAACG
75876951 CCCGTGTTGTTTT
1 CCCGTGTTGTTTT
75876964 GGCAGGCTCA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
55 55 0.98
56 1 0.02
ACGTcount: A:0.17, C:0.28, G:0.25, T:0.30
Consensus pattern (55 bp):
CCCGTGTTGTTTTAACAAGTTCGACCAAGGGTCTTACACACGGGCGTGTCGAACG
Found at i:75881065 original size:13 final size:13
Alignment explanation
Indices: 75881044--75881080 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
75881034 CCCGGCAGGG
75881044 ACACGCCCGTGGC
1 ACACGCCCGTGGC
*
75881057 ACACTCCCGTGGC
1 ACACGCCCGTGGC
*
75881070 ACATGCCCGTG
1 ACACGCCCGTG
75881081 TTCGATTACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.16, C:0.43, G:0.27, T:0.14
Consensus pattern (13 bp):
ACACGCCCGTGGC
Found at i:75892440 original size:40 final size:39
Alignment explanation
Indices: 75892374--75892524 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
75892364 AAATTGAATG
* * *
75892374 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
75892413 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
75892453 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
75892493 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
75892525 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:75892538 original size:40 final size:39
Alignment explanation
Indices: 75892411--75892540 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
75892401 ATGCTGGAAA
* *
75892411 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
75892451 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
75892491 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
75892531 TTATATCCGG
1 TTATATCCGG
75892541 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:75900435 original size:40 final size:40
Alignment explanation
Indices: 75900369--75900519 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
75900359 AAATTGAATG
* * *
75900369 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
75900408 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
75900448 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
75900488 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
75900520 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:75900533 original size:40 final size:40
Alignment explanation
Indices: 75900406--75900535 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
75900396 ATGCTGGAAA
* * *
75900406 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
75900446 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
75900486 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
75900526 TTATATCCGG
1 TTATATCCGG
75900536 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:75904044 original size:40 final size:40
Alignment explanation
Indices: 75903936--75904045 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
75903926 ATTGAATGAT
* * * * *
75903936 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
75903976 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
75904016 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
75904046 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:75904060 original size:40 final size:39
Alignment explanation
Indices: 75903936--75904085 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
75903926 ATTGAATGAT
* * * * * * *
75903936 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
75903976 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
75904016 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
75904056 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
75904086 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:75908230 original size:21 final size:22
Alignment explanation
Indices: 75908189--75908230 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
75908179 GTACTTTTCC
*
75908189 TTTCTCTCATTTTTCTTCTCTT
1 TTTCTCTCATTTTTCTCCTCTT
75908211 TTTC-CTCATATTTT-TCCTCT
1 TTTCTCTCAT-TTTTCTCCTCT
75908231 CAGCCCTAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.07, C:0.29, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTCTCTCATTTTTCTCCTCTT
Found at i:75911294 original size:25 final size:25
Alignment explanation
Indices: 75911266--75911457 Score: 244
Period size: 25 Copynumber: 7.8 Consensus size: 25
75911256 CAGATACTCC
*
75911266 ACAGCTCGTGTGAGCATGCCGATTT
1 ACAGCTCGTGTGAGCATACCGATTT
* *
75911291 ACAGCTCGTGTGAGCATATCAATTT
1 ACAGCTCGTGTGAGCATACCGATTT
*
75911316 ATAGCTCGTGTGAGCATACCGATTT
1 ACAGCTCGTGTGAGCATACCGATTT
* * *
75911341 ACAGCTCGTGAGAGCATACCAAATT
1 ACAGCTCGTGTGAGCATACCGATTT
* * *
75911366 ACAGCTTGTGTGGGCATACAGATTT
1 ACAGCTCGTGTGAGCATACCGATTT
*
75911391 ACATCTCGTGTGAGC--ACCGATTT
1 ACAGCTCGTGTGAGCATACCGATTT
*
75911414 ACAGCTCGTCTGAGCATACCGATTT
1 ACAGCTCGTGTGAGCATACCGATTT
* *
75911439 ATAGCTTGTGTGAGCATAC
1 ACAGCTCGTGTGAGCATAC
75911458 ATGTACAGAA
Statistics
Matches: 140, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
23 20 0.14
25 120 0.86
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATACCGATTT
Found at i:75912143 original size:40 final size:40
Alignment explanation
Indices: 75912099--75912182 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
75912089 AGCGGCGCTT
* *
75912099 TTAGCGGCGTTTTAATAAAAAACGCCACTAAAAA-AGAGCA
1 TTAGCGGCGCTTCAA-AAAAAACGCCACTAAAAATAGAGCA
* * * *
75912139 TTAGCGGTGCTTCCACAAAAACGCCACTAAAAATATAGCA
1 TTAGCGGCGCTTCAAAAAAAACGCCACTAAAAATAGAGCA
75912179 TTAG
1 TTAG
75912183 TGGAACTTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 17 0.46
40 20 0.54
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (40 bp):
TTAGCGGCGCTTCAAAAAAAACGCCACTAAAAATAGAGCA
Found at i:75912248 original size:41 final size:40
Alignment explanation
Indices: 75912188--75912269 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 40
75912178 ATTAGTGGAA
* *
75912188 CTTATAAGGAAACGCCGCTATATG-TTGAGAATTAGCGGCG
1 CTTATAAGGAAACACCGCTATA-GCTTGACAATTAGCGGCG
* *
75912228 CTTATATGAGAAACACCGCTATAGCTTGACCATTAGCGGCG
1 CTTATAAG-GAAACACCGCTATAGCTTGACAATTAGCGGCG
75912269 C
1 C
75912270 ATTGGAGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
40 8 0.22
41 28 0.78
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTATAAGGAAACACCGCTATAGCTTGACAATTAGCGGCG
Found at i:75912886 original size:7 final size:7
Alignment explanation
Indices: 75912876--75912927 Score: 77
Period size: 7 Copynumber: 7.4 Consensus size: 7
75912866 GTCGGGTTAG
75912876 GGGTTTA
1 GGGTTTA
*
75912883 GGGTTAA
1 GGGTTTA
75912890 GGGTTTA
1 GGGTTTA
75912897 GGGTTTA
1 GGGTTTA
*
75912904 GGGTTAA
1 GGGTTTA
75912911 GGGTTTA
1 GGGTTTA
*
75912918 TGGTTTA
1 GGGTTTA
75912925 GGG
1 GGG
75912928 GTTATAGTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.17, C:0.00, G:0.44, T:0.38
Consensus pattern (7 bp):
GGGTTTA
Found at i:75912900 original size:21 final size:21
Alignment explanation
Indices: 75912876--75912927 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
75912866 GTCGGGTTAG
75912876 GGGTTTAGGGTTAAGGGTTTA
1 GGGTTTAGGGTTAAGGGTTTA
75912897 GGGTTTAGGGTTAAGGGTTTA
1 GGGTTTAGGGTTAAGGGTTTA
*
75912918 TGGTTTAGGG
1 GGGTTTAGGG
75912928 GTTATAGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.17, C:0.00, G:0.44, T:0.38
Consensus pattern (21 bp):
GGGTTTAGGGTTAAGGGTTTA
Found at i:75912932 original size:14 final size:14
Alignment explanation
Indices: 75912869--75912931 Score: 65
Period size: 14 Copynumber: 4.4 Consensus size: 14
75912859 GATTAGGGTC
75912869 GGGTTAGGGGTTTA-
1 GGGTTA-GGGTTTAG
75912883 GGGTTAAGGGTTTAG
1 GGGTT-AGGGTTTAG
* *
75912898 GGTTTAGGGTTAAG
1 GGGTTAGGGTTTAG
* *
75912912 GGTTTATGGTTTAG
1 GGGTTAGGGTTTAG
75912926 GGGTTA
1 GGGTTA
75912932 TAGTTTAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
14 37 0.88
15 5 0.12
ACGTcount: A:0.17, C:0.00, G:0.44, T:0.38
Consensus pattern (14 bp):
GGGTTAGGGTTTAG
Found at i:75914150 original size:8 final size:8
Alignment explanation
Indices: 75914137--75914202 Score: 73
Period size: 8 Copynumber: 8.4 Consensus size: 8
75914127 TAATAGTGAT
75914137 AATAGTGG
1 AATAGTGG
75914145 AATAGTGG
1 AATAGTGG
75914153 AATAGTGG
1 AATAGTGG
*
75914161 AATAGTGT
1 AATAGTGG
*
75914169 AAT--TGC
1 AATAGTGG
*
75914175 ATATAGTGT
1 A-ATAGTGG
*
75914184 AATAGTGT
1 AATAGTGG
75914192 AATAGTGG
1 AATAGTGG
75914200 AAT
1 AAT
75914203 TTTTTGATTG
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
6 3 0.06
7 2 0.04
8 43 0.84
9 3 0.06
ACGTcount: A:0.38, C:0.02, G:0.29, T:0.32
Consensus pattern (8 bp):
AATAGTGG
Found at i:75915037 original size:99 final size:99
Alignment explanation
Indices: 75914861--75915144 Score: 452
Period size: 99 Copynumber: 2.9 Consensus size: 99
75914851 ATGTTTACTT
* *
75914861 AAATTAATATATGCAAATTAAAAGAAACACTTAACAAGTTTAATGTCATTAATTTAAATATTTTA
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTTAATGTCATTAATTTAAATATTTTA
*
75914926 TTTTATTCTTAAATTACCTAATTTTTAAATTAAC
66 TTTTATTTTTAAATTACCTAATTTTTAAATTAAC
75914960 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTTAATGTCATTAATTTAAATATTTTA
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTTAATGTCATTAATTTAAATATTTTA
75915025 TTTTATTTTTAAATTACCTAATTTTTAAATTAAC
66 TTTTATTTTTAAATTACCTAATTTTTAAATTAAC
** *
75915059 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAATGTTTAAAAT-ATT--TTGT--CTACTT
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAA-GTTTAATGTCATTAATT-TAAATA-TT
75915119 TTATTTTATTTTTAAATTACCTAATT
63 TTATTTTATTTTTAAATTACCTAATT
75915145 AAATTAAATT
Statistics
Matches: 176, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
96 2 0.01
97 30 0.17
98 1 0.01
99 136 0.77
100 7 0.04
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.43
Consensus pattern (99 bp):
AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTTAATGTCATTAATTTAAATATTTTA
TTTTATTTTTAAATTACCTAATTTTTAAATTAAC
Done.