Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 253 of 770
Found at i:75915063 original size:16 final size:16
Alignment explanation
Indices: 75915029--75915063 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
75915019 ATTTTATTTT
* *
75915029 ATTTTTAAATTACCTA
1 ATTTTTAAATTAACAA
75915045 ATTTTTAAATTAACAA
1 ATTTTTAAATTAACAA
75915061 ATT
1 ATT
75915064 AATAAATGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTTTTAAATTAACAA
Found at i:75915259 original size:5 final size:5
Alignment explanation
Indices: 75915251--75915280 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
75915241 GTATTTAAAG
75915251 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
75915281 AATAGGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:75915322 original size:96 final size:94
Alignment explanation
Indices: 75915164--75915834 Score: 846
Period size: 96 Copynumber: 7.2 Consensus size: 94
75915154 TGTATTTAAA
* * * *
75915164 ATTTTATTTTATTTTAATCACGAAAAA-ACTTTTGTCAACTTCTATTTTATTTTTAAATTACCTA
1 ATTTTATTTTATTTTAATAATGAAAAATAC--TTGTCTACTTTTA-TTTATTTTTAAATTACCTA
75915228 ATTAAATTAAATTGTATTTAAAGTTTTATTTT
63 ATTAAATTAAATTGTATTTAAAGTTTTATTTT
*
75915260 ATTTTATTTTATTTTATTTTAAATAGGAAAAA-ACTTGTCTACTTTTA-TT-TTTTTAAATTACC
1 ATTTTATTTTATTTTA--AT-AAT--GAAAAATACTTGTCTACTTTTATTTATTTTTAAATTACC
75915322 TAATTAAATTAAATTGTATTTAAAGTTTTATTTT
61 TAATTAAATTAAATTGTATTTAAAGTTTTATTTT
* **
75915356 ATTTTATTTTATTTTAATCATGAAAAATTTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
1 ATTTTATTTTATTTTAATAATGAAAAA-TACTTGTCTACTTTTA-TTTATTTTTAAATTACCTAA
75915421 TTAAATTAAATTGTATTTAAAGTTTTATTTT
64 TTAAATTAAATTGTATTTAAAGTTTTATTTT
* **
75915452 ATTTTATTTTATTTTAATCATGAAAAATTTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAA
1 ATTTTATTTTATTTTAATAATGAAAAA-TACTTGTCTACTTTTA-TTTATTTTTAAATTACCTAA
75915517 TTAAATTAAATTGTATTTAAAG---------
64 TTAAATTAAATTGTATTTAAAGTTTTATTTT
* *
75915539 -TTTTATTTTATTTTAATCAGGAAAAA-ACTTGTCTACTTTTATTTTATTTTTAAATTACCTAAT
1 ATTTTATTTTATTTTAATAATGAAAAATACTTGTCTACTTTTA-TTTATTTTTAAATTACCTAAT
75915602 TAAATTAAATTGTATTTAAAGTTTTATTTT
65 TAAATTAAATTGTATTTAAAGTTTTATTTT
*
75915632 ATTTTATTTTATTTTAATCATGAAAAA-ACCTTTGTCTACTTTTATTTTATTTTTAAATTACCTA
1 ATTTTATTTTATTTTAATAATGAAAAATA-C-TTGTCTACTTTTA-TTTATTTTTAAATTACCTA
*
75915696 ATTAAAGTAAATTGTATTTAAAG-----TTTT
63 ATTAAATTAAATTGTATTTAAAGTTTTATTTT
* *
75915723 ATTTTATTTTATTTTAATCAGGAAAAA-ACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTA
1 ATTTTATTTTATTTTAATAATGAAAAATAC--TTGTCTACTTTTA-TTTATTTTTAAATTACCTA
* *
75915787 AATAAATTAAATTGTATTTAAAATTTTATTTT
63 ATTAAATTAAATTGTATTTAAAGTTTTATTTT
75915819 ATTTTATTTTATTTTA
1 ATTTTATTTTATTTTA
75915835 TTTTAATCAC
Statistics
Matches: 529, Mismatches: 18, Indels: 56
0.88 0.03 0.09
Matches are distributed among these distances:
84 56 0.11
86 25 0.05
90 1 0.00
91 91 0.17
93 15 0.03
94 27 0.05
95 3 0.01
96 288 0.54
97 2 0.00
98 1 0.00
99 12 0.02
101 8 0.02
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (94 bp):
ATTTTATTTTATTTTAATAATGAAAAATACTTGTCTACTTTTATTTATTTTTAAATTACCTAATT
AAATTAAATTGTATTTAAAGTTTTATTTT
Found at i:75915355 original size:5 final size:5
Alignment explanation
Indices: 75915347--75915371 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
75915337 GTATTTAAAG
75915347 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
75915372 ATCATGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:75915422 original size:192 final size:184
Alignment explanation
Indices: 75915109--75915834 Score: 1075
Period size: 180 Copynumber: 3.9 Consensus size: 184
75915099 TTAAAATATT
75915109 TTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAA-----ATTTT
1 TTGTCTACTTTTA-TTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT
* * *
75915169 ATTTTATTTTAATCACGAAAAAACTTTTGTCAACTTCTATTTTATTTTTAAATTACCTAATTAAA
65 ATTTTATTTTAATCAGGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAA
*
75915234 TTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATTTTATTTTAAATAGGAAAAAAC
130 TTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATTTTA--AT-AAT--GAAAAAAC
75915294 TTGTCTACTTTTA-TT-TTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
1 TTGTCTACTTTTATTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG-----TTTTA
* **
75915357 TTTTATTTTATTTTAATCATGAAAAATTTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAAT
61 TTTTATTTTATTTTAATCAGGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAAT
* **
75915422 TAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATTTTAATCATGAAAAATTTT
126 TAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATTTTAATAATGAAAAA--AC
75915483 TTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG-----TTTT
1 TTGTCTACTTTTA-TTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT
75915543 ATTTTATTTTAATCAGGAAAAAAC--TTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAA
65 ATTTTATTTTAATCAGGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAA
*
75915606 TTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATTTTAATCATGAAAAAACC
130 TTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATTTTAATAATGAAAAAA-C
*
75915662 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAGTTTTATTT
1 -TTGTCTACTTTTA-TTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
*
75915727 TATTTTATTTTAATCAGGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAAATAA
64 TATTTTATTTTAATCAGGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAA
*
75915792 ATTAAATTGTATTTAAAATTTTATTTTATTTTATTTTATTTTA
129 ATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATTTTA
75915835 TTTTAATCAC
Statistics
Matches: 500, Mismatches: 17, Indels: 46
0.89 0.03 0.08
Matches are distributed among these distances:
180 147 0.29
182 62 0.12
183 2 0.00
185 41 0.08
187 85 0.17
189 15 0.03
190 1 0.00
191 2 0.00
192 145 0.29
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (184 bp):
TTGTCTACTTTTATTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTA
TTTTATTTTAATCAGGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAAT
TAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATTTTAATAATGAAAAAAC
Found at i:75915451 original size:5 final size:5
Alignment explanation
Indices: 75915443--75915467 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
75915433 GTATTTAAAG
75915443 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
75915468 ATCATGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:75915631 original size:5 final size:5
Alignment explanation
Indices: 75915623--75915647 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
75915613 GTATTTAAAG
75915623 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
75915648 ATCATGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:75915684 original size:276 final size:267
Alignment explanation
Indices: 75915108--75915824 Score: 1048
Period size: 276 Copynumber: 2.6 Consensus size: 267
75915098 TTTAAAATAT
*
75915108 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAA-----ATTT
1 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAGTTTTATTT
* * * *
75915168 TATTTTATTTTAATCACGAAAAAACTTTTGTCAACTTCTATTTTATTTTTAAATTACCTAATTAA
66 TATTTTATTTTAATCAGGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAAATAA
75915233 ATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATTTTATTTTAAATAGGAAAAAACTTGT
131 ATTAAATTGTATTT--A-----A----A----ATTTTATTTTATTTT-AATAGGAAAAAACTTGT
75915298 CTACTTTTATTTTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTAT
180 CTACTTTTATTTTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTAT
***
75915363 TTTATTTTAATCATGAAAAATTT
245 TTTATTTTAATCATGAAAAAACC
*
75915386 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
1 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAG-----TTT
* **
75915451 TATTTTATTTTATTTTAATCATGAAAAATTTTTTGTCTACTTTTATTTTATTTTTAAATTACCTA
61 TATTTTATTTTATTTTAATCAGGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTA
* *
75915516 ATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTAATCAGGAAAAAACTTGTCTACTTTTAT
126 AATAAATTAAATTGTATTTAAAATTTTATTTTATTTTAAT-AGGAAAAAACTTGTCTACTTTTA-
75915581 TTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATTT
189 -TT-TTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATTT
75915646 TAATCATGAAAAAACC
252 TAATCATGAAAAAACC
75915662 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAGTTTTATTT
1 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAGTTTTATTT
75915727 TATTTTATTTTAATCAGGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAAATAA
66 TATTTTATTTTAATCAGGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAAATAA
75915792 ATTAAATTGTATTTAAAATTTTATTTTATTTTA
131 ATTAAATTGTATTTAAAATTTTATTTTATTTTA
75915825 TTTTATTTTA
Statistics
Matches: 410, Mismatches: 15, Indels: 35
0.89 0.03 0.08
Matches are distributed among these distances:
271 101 0.25
272 3 0.01
273 37 0.09
275 2 0.00
276 130 0.32
277 1 0.00
278 56 0.14
281 1 0.00
286 1 0.00
288 78 0.19
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (267 bp):
TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAGTTTTATTT
TATTTTATTTTAATCAGGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAAATAA
ATTAAATTGTATTTAAAATTTTATTTTATTTTAATAGGAAAAAACTTGTCTACTTTTATTTTTTT
AAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATTTTAATCATGA
AAAAACC
Found at i:75915766 original size:43 final size:43
Alignment explanation
Indices: 75915628--75915775 Score: 136
Period size: 43 Copynumber: 3.3 Consensus size: 43
75915618 TAAAGTTTTA
*
75915628 TTTTATTTTATTTTATTTTAATCATGAAAAAACCTTTGTCTAC
1 TTTTATTTTATTTTATTTTAATCATGAAAAAACTTTTGTCTAC
** * * * * ** *
75915671 TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAA-TTGTATTTAAAG
1 TTTTATTTTA-TTTTATTTTA-ATCATGAAA--AAACTT-T-TGTCTAC
*
75915719 TTTTATTTTATTTTATTTTAATCAGGAAAAAACTTTTGTCTAC
1 TTTTATTTTATTTTATTTTAATCATGAAAAAACTTTTGTCTAC
75915762 TTTTATTTTATTTT
1 TTTTATTTTATTTT
75915776 TAAATTACCT
Statistics
Matches: 78, Mismatches: 20, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
43 27 0.35
44 12 0.15
45 8 0.10
46 6 0.08
47 12 0.15
48 13 0.17
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.56
Consensus pattern (43 bp):
TTTTATTTTATTTTATTTTAATCATGAAAAAACTTTTGTCTAC
Found at i:75915817 original size:5 final size:5
Alignment explanation
Indices: 75915809--75915839 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
75915799 TGTATTTAAA
75915809 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A
75915840 ATCACAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:75916049 original size:9 final size:9
Alignment explanation
Indices: 75916037--75916143 Score: 94
Period size: 9 Copynumber: 11.7 Consensus size: 9
75916027 AAATATATAT
*
75916037 CATATTTTA
1 CATAATTTA
75916046 CATAATTTA
1 CATAATTTA
*
75916055 CATAACTTA
1 CATAATTTA
75916064 CATAA--TA
1 CATAATTTA
75916071 CATAAATATATA
1 CAT-AAT-T-TA
75916083 TCAT-ATCTTA
1 -CATAAT-TTA
75916093 CATAATTTA
1 CATAATTTA
75916102 CATAATTTA
1 CATAATTTA
* *
75916111 GATAACTTA
1 CATAATTTA
75916120 CATAATTTA
1 CATAATTTA
**
75916129 CATAGCTTA
1 CATAATTTA
75916138 CATAAT
1 CATAAT
75916144 ACATAAATAT
Statistics
Matches: 80, Mismatches: 11, Indels: 14
0.76 0.10 0.13
Matches are distributed among these distances:
7 5 0.06
8 2 0.03
9 61 0.76
10 4 0.05
11 3 0.04
12 2 0.03
13 3 0.04
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.40
Consensus pattern (9 bp):
CATAATTTA
Found at i:75916064 original size:18 final size:18
Alignment explanation
Indices: 75916043--75916143 Score: 107
Period size: 18 Copynumber: 5.5 Consensus size: 18
75916033 ATATCATATT
75916043 TTACATAATTTACATAAC
1 TTACATAATTTACATAAC
*
75916061 TTACATAA--TACATAAA
1 TTACATAATTTACATAAC
* *
75916077 TATATATCATATCTTACATAAT
1 T-TACAT-A-AT-TTACATAAC
*
75916099 TTACATAATTTAGATAAC
1 TTACATAATTTACATAAC
*
75916117 TTACATAATTTACATAGC
1 TTACATAATTTACATAAC
75916135 TTACATAAT
1 TTACATAAT
75916144 ACATAAATAT
Statistics
Matches: 69, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
16 8 0.12
17 4 0.06
18 41 0.59
19 3 0.04
20 1 0.01
21 4 0.06
22 8 0.12
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.40
Consensus pattern (18 bp):
TTACATAATTTACATAAC
Found at i:75916094 original size:47 final size:48
Alignment explanation
Indices: 75916023--75916143 Score: 162
Period size: 47 Copynumber: 2.6 Consensus size: 48
75916013 AATCTCATCA
*
75916023 ACATAAATATATATCATATTTTACATAATTTACATAACTTACATAA-T
1 ACATAAATATATATCATATCTTACATAATTTACATAACTTACATAACT
* *
75916070 ACATAAATATATATCATATCTTACATAATTTACATAATTTAGATAACTT
1 ACATAAATATATATCATATCTTACATAATTTACATAACTTACATAAC-T
*
75916119 ACAT-AAT-T-TA-CATAGCTTACATAAT
1 ACATAAATATATATCATATCTTACATAAT
75916144 ACATAAATAT
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
45 14 0.21
46 2 0.03
47 44 0.65
48 3 0.04
49 5 0.07
ACGTcount: A:0.45, C:0.13, G:0.02, T:0.40
Consensus pattern (48 bp):
ACATAAATATATATCATATCTTACATAATTTACATAACTTACATAACT
Found at i:75916186 original size:74 final size:73
Alignment explanation
Indices: 75916043--75916176 Score: 220
Period size: 74 Copynumber: 1.9 Consensus size: 73
75916033 ATATCATATT
*
75916043 TTACATAATTTACATAACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAAT
1 TTACATAATTTACATAACTTACATAATACATAAATATATATCATATC-TACATAACTTACATAAT
75916108 TTAGATAAC
65 TTAGATAAC
*
75916117 TTACATAATTTACATAGCTTACATAATACATAAATATATATCATATC-A-A-AACTTACATAA
1 TTACATAATTTACATAACTTACATAATACATAAATATATATCATATCTACATAACTTACATAA
75916177 CTTAATTAGA
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
70 10 0.17
71 1 0.02
72 1 0.02
74 46 0.79
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.37
Consensus pattern (73 bp):
TTACATAATTTACATAACTTACATAATACATAAATATATATCATATCTACATAACTTACATAATT
TAGATAAC
Found at i:75918246 original size:51 final size:50
Alignment explanation
Indices: 75918087--75918243 Score: 233
Period size: 51 Copynumber: 3.1 Consensus size: 50
75918077 ACTTCTGATC
* *
75918087 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAGTGACA
* *
75918138 AGTGACAAATGATAAGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
* * *
75918188 AGTGATAAGTGATACGTGGTAGCTTTAGCTGCACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGTGACA
75918239 AGTGA
1 AGTGA
75918244 TAAATGTGAT
Statistics
Matches: 96, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
50 45 0.47
51 51 0.53
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (50 bp):
AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
Found at i:75924568 original size:40 final size:40
Alignment explanation
Indices: 75924460--75924709 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
75924450 CGGGATTTAA
* * * * *
75924460 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
75924500 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75924540 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75924580 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75924620 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75924660 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75924700 CCGGATATAT
1 CCGGATATAT
75924710 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:75932742 original size:40 final size:40
Alignment explanation
Indices: 75932634--75932843 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
75932624 CGGGATTTAA
* * * * *
75932634 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
75932674 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75932714 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75932754 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75932794 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75932834 CCGGATATAT
1 CCGGATATAT
75932844 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:75936129 original size:21 final size:21
Alignment explanation
Indices: 75936105--75936153 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
75936095 TAGAGCAGAG
*
75936105 GCAGCAG-AGAGGGAGGCAGTA
1 GCAGCAGCA-AGGGAGGCAGCA
*
75936126 GCAGCAGCAAGGGAGGCAGCG
1 GCAGCAGCAAGGGAGGCAGCA
75936147 GCAGCAG
1 GCAGCAG
75936154 TGGGAGAGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.47, T:0.02
Consensus pattern (21 bp):
GCAGCAGCAAGGGAGGCAGCA
Found at i:75938389 original size:20 final size:20
Alignment explanation
Indices: 75938346--75938387 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
75938336 TAAAAATAGT
75938346 AAATGCAATGGAAAGTAATG
1 AAATGCAATGGAAAGTAATG
75938366 AAATGCAAAT-GAAAGTAA-G
1 AAATGC-AATGGAAAGTAATG
75938385 AAA
1 AAA
75938388 ATTTGGAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 14 0.67
21 3 0.14
ACGTcount: A:0.57, C:0.05, G:0.21, T:0.17
Consensus pattern (20 bp):
AAATGCAATGGAAAGTAATG
Found at i:75941378 original size:27 final size:26
Alignment explanation
Indices: 75941273--75941384 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
75941263 AGGAAGCGTC
* **
75941273 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
75941300 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
75941327 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
75941355 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
75941381 CTGG
1 CTGG
75941385 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:75941379 original size:54 final size:54
Alignment explanation
Indices: 75941273--75941384 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
75941263 AGGAAGCGTC
* *
75941273 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTGCCACATATATCTGTT
* * * *
75941327 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-AATCTGGTGACTCTGCCACATATATCTGTT
75941381 CTGG
1 CTGG
75941385 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTGCCACATATATCTGTT
Found at i:75942542 original size:41 final size:41
Alignment explanation
Indices: 75942485--75942567 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
75942475 AAATTGTATG
*
75942485 TTTTAAGTTGAAATTTTTTGGTAATGCCCTGTAACCCTATT
1 TTTTAAGTTGAAATTTTTTAGTAATGCCCTGTAACCCTATT
*
75942526 TTTTAAGTTGAAATTTTTTAGTAATGCTCTGTAACCCTATT
1 TTTTAAGTTGAAATTTTTTAGTAATGCCCTGTAACCCTATT
75942567 T
1 T
75942568 CGATGTCTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.48
Consensus pattern (41 bp):
TTTTAAGTTGAAATTTTTTAGTAATGCCCTGTAACCCTATT
Found at i:75946063 original size:40 final size:39
Alignment explanation
Indices: 75945898--75946081 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
75945888 AAATTGAATG
* * *
75945898 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
75945938 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
75945978 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
75946018 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
75946057 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
75946082 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:75946106 original size:80 final size:81
Alignment explanation
Indices: 75945938--75946126 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
75945928 GCTGGAAATT
* * * *
75945938 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
75946003 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
75946019 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
75946082 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
75946098 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
75946127 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:75954706 original size:23 final size:24
Alignment explanation
Indices: 75954613--75954700 Score: 94
Period size: 23 Copynumber: 3.8 Consensus size: 24
75954603 TACCGATATA
*
75954613 TTAGCTC-ATAAGAGCTTATTATT
1 TTAGCTCAATAAGAGCTTACTATT
* *
75954636 CTCAGCTC-GTAAGAGCTTACTATT
1 -TTAGCTCAATAAGAGCTTACTATT
* *
75954660 TTAGCTCAAT-AGATCTTACTGTT
1 TTAGCTCAATAAGAGCTTACTATT
75954683 TTAGCTCAAT-AGAGCTTA
1 TTAGCTCAATAAGAGCTTA
75954701 TTGTTTATCA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
23 34 0.62
24 21 0.38
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (24 bp):
TTAGCTCAATAAGAGCTTACTATT
Found at i:75957434 original size:19 final size:20
Alignment explanation
Indices: 75957398--75957435 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
75957388 GTGTACTCAC
*
75957398 ACACGCCCATGTGGCTCAGG
1 ACACGCCCATGTGCCTCAGG
*
75957418 ACACGCCCGTGT-CCTCAG
1 ACACGCCCATGTGCCTCAG
75957436 CTCATGTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.18, C:0.39, G:0.26, T:0.16
Consensus pattern (20 bp):
ACACGCCCATGTGCCTCAGG
Found at i:75981039 original size:53 final size:54
Alignment explanation
Indices: 75980954--75981157 Score: 205
Period size: 53 Copynumber: 3.8 Consensus size: 54
75980944 TTCCTTTTTA
* * * *
75980954 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
* * * *
75981007 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGAAT-TTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GGTATCTTTGCCTTATAG
** * * * * * *
75981061 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCTTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
* * *
75981116 AACTTACCAATGGCATGCCTTGGCATGGTCTTACTTGGTATC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
75981158 CTCAAACCCT
Statistics
Matches: 120, Mismatches: 27, Indels: 7
0.78 0.18 0.05
Matches are distributed among these distances:
53 41 0.34
54 40 0.33
55 39 0.32
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
Found at i:75988029 original size:40 final size:39
Alignment explanation
Indices: 75987980--75988127 Score: 206
Period size: 40 Copynumber: 3.7 Consensus size: 39
75987970 TTGGTAACTT
* *
75987980 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAAC-ACTA
* *
75988020 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAA-CACTA
* *
75988060 GCATAAATGCCTTCGGGACTTAGCCCGGATATATTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATA-ACACTA
*
75988100 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGACTTAGCCCGG
75988128 GTATTATTCA
Statistics
Matches: 100, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
40 99 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAACACTA
Found at i:75991913 original size:27 final size:27
Alignment explanation
Indices: 75991883--75991968 Score: 79
Period size: 27 Copynumber: 3.2 Consensus size: 27
75991873 TTGACATGGT
75991883 CTTACATGATTTCCTTGCCTTGTAGAA
1 CTTACATGATTTCCTTGCCTTGTAGAA
* * * **
75991910 CTTACCA--A-TGCCATGCCTTGGCATGGT
1 CTTA-CATGATTTCCTTGCCTT-GTA-GAA
75991937 CTTACATGATTTCCTTGCCTTGTAGAA
1 CTTACATGATTTCCTTGCCTTGTAGAA
75991964 CTTAC
1 CTTAC
75991969 CAATGCCATG
Statistics
Matches: 43, Mismatches: 10, Indels: 12
0.66 0.15 0.18
Matches are distributed among these distances:
25 9 0.21
26 5 0.12
27 15 0.35
28 5 0.12
29 9 0.21
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.37
Consensus pattern (27 bp):
CTTACATGATTTCCTTGCCTTGTAGAA
Found at i:75991927 original size:25 final size:25
Alignment explanation
Indices: 75991898--75991983 Score: 75
Period size: 25 Copynumber: 3.3 Consensus size: 25
75991888 ATGATTTCCT
75991898 TGCCTTGTAGAACTTACCAATGCCA
1 TGCCTTGTAGAACTTACCAATGCCA
* ** * *
75991923 TGCCTTGGCATGGTCTTA-CATGATTTCCT
1 TGCCTT-GTA-GAACTTACCA--A-TGCCA
75991952 TGCCTTGTAGAACTTACCAATGCCA
1 TGCCTTGTAGAACTTACCAATGCCA
75991977 TGCCTTG
1 TGCCTTG
75991984 GCATGGTCTT
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
25 16 0.36
26 5 0.11
27 10 0.22
28 5 0.11
29 9 0.20
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.34
Consensus pattern (25 bp):
TGCCTTGTAGAACTTACCAATGCCA
Found at i:75991943 original size:54 final size:54
Alignment explanation
Indices: 75991747--75992006 Score: 281
Period size: 54 Copynumber: 4.8 Consensus size: 54
75991737 TTCCTTTTTA
* * * * * *
75991747 AACTTACCATTGTCATGTCTT-GAATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAG
* * * ** *
75991799 AACTCACCATTGCCATGCCTTGGCACGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAG
** * * * * * *
75991853 TAGTTTATCAATGACATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAG
* *
75991908 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTGTAG
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAG
* *
75991962 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
75992007 AAACCCTAAT
Statistics
Matches: 174, Mismatches: 31, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
52 18 0.10
53 25 0.14
54 91 0.52
55 40 0.23
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAG
Found at i:75991956 original size:29 final size:29
Alignment explanation
Indices: 75991872--75991958 Score: 76
Period size: 29 Copynumber: 3.1 Consensus size: 29
75991862 AATGACATGT
*
75991872 CTTGACATGGTCTTACATGATTTCCTTGC
1 CTTGGCATGGTCTTACATGATTTCCTTGC
* ** * *
75991901 CTT-GTA-GAACTTACCA--A-TGCCATGC
1 CTTGGCATGGTCTTA-CATGATTTCCTTGC
75991926 CTTGGCATGGTCTTACATGATTTCCTTGC
1 CTTGGCATGGTCTTACATGATTTCCTTGC
75991955 CTTG
1 CTTG
75991959 TAGAACTTAC
Statistics
Matches: 41, Mismatches: 11, Indels: 12
0.64 0.17 0.19
Matches are distributed among these distances:
25 9 0.22
26 5 0.12
27 10 0.24
28 4 0.10
29 13 0.32
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.38
Consensus pattern (29 bp):
CTTGGCATGGTCTTACATGATTTCCTTGC
Found at i:75991994 original size:27 final size:27
Alignment explanation
Indices: 75991910--75991995 Score: 79
Period size: 27 Copynumber: 3.2 Consensus size: 27
75991900 CCTTGTAGAA
75991910 CTTACCAATGCCATGCCTTGGCATGGT
1 CTTACCAATGCCATGCCTTGGCATGGT
* * * **
75991937 CTTA-CATGATTTCCTTGCCTT-GTA-GAA
1 CTTACCA--A-TGCCATGCCTTGGCATGGT
75991964 CTTACCAATGCCATGCCTTGGCATGGT
1 CTTACCAATGCCATGCCTTGGCATGGT
75991991 CTTAC
1 CTTAC
75991996 TTGGTATCCT
Statistics
Matches: 43, Mismatches: 10, Indels: 12
0.66 0.15 0.18
Matches are distributed among these distances:
25 9 0.21
26 5 0.12
27 15 0.35
28 5 0.12
29 9 0.21
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.34
Consensus pattern (27 bp):
CTTACCAATGCCATGCCTTGGCATGGT
Found at i:75996472 original size:42 final size:40
Alignment explanation
Indices: 75996319--75996473 Score: 121
Period size: 42 Copynumber: 3.7 Consensus size: 40
75996309 TATTAGTTTA
* * * * *
75996319 CGTGTAAGACCATATTTGGGATATGGCATCATTATGAGATTT
1 CGTGTAAGACCATATCTAGGATATAGCATCAATATGA-A-AT
* * * * *
75996361 CGTGTAAGACCATGTCTGGGACATGGCATCGATATGAGAAT
1 CGTGTAAGACCATATCTAGGATATAGCATCAATATGA-AAT
* * * * *
75996402 AGTGTAAAACCATAGCTAGGCTATTAGCATCAATATGATAT
1 CGTGTAAGACCATATCTAGGATA-TAGCATCAATATGAAAT
75996443 CCCGTGTAAGACCATATCTAGGATATAGCAT
1 --CGTGTAAGACCATATCTAGGATATAGCAT
75996474 TGGTATGATT
Statistics
Matches: 90, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 19 0.21
42 52 0.58
43 19 0.21
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (40 bp):
CGTGTAAGACCATATCTAGGATATAGCATCAATATGAAAT
Found at i:75998928 original size:11 final size:11
Alignment explanation
Indices: 75998914--75998943 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
75998904 TTTAGAATTT
75998914 TTTTATATATA
1 TTTTATATATA
75998925 TTTTATATATA
1 TTTTATATATA
*
75998936 TTATATAT
1 TTTTATAT
75998944 TTTTGAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
TTTTATATATA
Found at i:76000949 original size:18 final size:17
Alignment explanation
Indices: 76000907--76000946 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
76000897 TTTTATCAAC
* *
76000907 ATTTTATATATTTTTTTA
1 ATTTTAAATA-TTTTATA
76000925 ATTTTAAATATTTTATA
1 ATTTTAAATATTTTATA
76000942 ATTTT
1 ATTTT
76000947 TAATTATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTAAATATTTTATA
Found at i:76000961 original size:18 final size:17
Alignment explanation
Indices: 76000919--76000961 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
76000909 TTTATATATT
76000919 TTTTTAA-TTTTAAATA
1 TTTTTAATTTTTAAATA
*
76000935 TTTTATAATTTTTAATTA
1 TTTT-TAATTTTTAAATA
76000953 TTTATTAAT
1 TTT-TTAAT
76000962 GTGATATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 4 0.17
17 3 0.13
18 15 0.65
19 1 0.04
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTTAATTTTTAAATA
Found at i:76001516 original size:9 final size:9
Alignment explanation
Indices: 76001455--76001910 Score: 137
Period size: 10 Copynumber: 48.3 Consensus size: 9
76001445 TTTTATTAAG
76001455 AATTATAAA
1 AATTATAAA
76001464 AATTA-AAA
1 AATTATAAA
*
76001472 TATT-TAACA
1 AATTATAA-A
*
76001481 AA-TATTAA
1 AATTATAAA
*
76001489 GATTGA-AATA
1 AATT-ATAA-A
76001499 AACTTATAAA
1 AA-TTATAAA
76001509 AATTATAAA
1 AATTATAAA
76001518 AATAATATAAA
1 AAT--TATAAA
*
76001529 ATAATATAAA
1 A-ATTATAAA
**
76001539 TTTTATAAA
1 AATTATAAA
76001548 AA-TATAAA
1 AATTATAAA
* *
76001556 AAATCTAATA
1 AATTATAA-A
*
76001566 AATTCTAACA
1 AATTATAA-A
*
76001576 AAGTATAAA
1 AATTATAAA
*
76001585 AATTATGAA
1 AATTATAAA
* *
76001594 AGTAATAAA
1 AATTATAAA
**
76001603 ACACAATTAGAA
1 A-ATTA-TA-AA
** *
76001615 TTTTAGAAA
1 AATTATAAA
76001624 AATGTATAAA
1 AAT-TATAAA
*
76001634 AATTCTTAAA
1 AATT-ATAAA
76001644 AAGTTATAAA
1 AA-TTATAAA
*
76001654 ATTTCATAAA
1 AATT-ATAAA
76001664 AA-TATAAA
1 AATTATAAA
* *
76001672 AATCATAAG
1 AATTATAAA
* *
76001681 TATTAT-TA
1 AATTATAAA
76001689 AA-TATTAAA
1 AATTA-TAAA
*
76001698 AATATATTGAA
1 AAT-TA-TAAA
* *
76001709 ATTTATGTAA
1 AATTAT-AAA
*
76001719 ACTTATAAA
1 AATTATAAA
*
76001728 AGTTAT-AA
1 AATTATAAA
*
76001736 AATAATAATA
1 AATTATAA-A
*
76001746 AATAATAAA
1 AATTATAAA
*
76001755 AACTTATGAA
1 AA-TTATAAA
*
76001765 TATTATAAA
1 AATTATAAA
76001774 AA-TATAAA
1 AATTATAAA
76001782 ATATTATAAA
1 A-ATTATAAA
76001792 ATATT-TATAA
1 A-ATTATA-AA
*
76001802 AGTTAATAAA
1 AATT-ATAAA
*
76001812 ATATATCTAAA
1 A-AT-TATAAA
76001823 ATATT-TAAA
1 A-ATTATAAA
*
76001832 ATTTTATAAA
1 A-ATTATAAA
76001842 AACTTATAAAA
1 AA-TTAT-AAA
*
76001853 AATCATAAA
1 AATTATAAA
* *
76001862 AATTAGATAT
1 AATTATA-AA
*
76001872 AA-TATCAA
1 AATTATAAA
*
76001880 AATTCTAATA
1 AATTATAA-A
76001890 AATTATAAA
1 AATTATAAA
*
76001899 GATTATAAA
1 AATTATAAA
76001908 AAT
1 AAT
76001911 AAAAAAAGTC
Statistics
Matches: 331, Mismatches: 74, Indels: 84
0.68 0.15 0.17
Matches are distributed among these distances:
7 2 0.01
8 44 0.13
9 120 0.36
10 121 0.37
11 40 0.12
12 4 0.01
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.34
Consensus pattern (9 bp):
AATTATAAA
Found at i:76001759 original size:37 final size:38
Alignment explanation
Indices: 76001717--76001862 Score: 106
Period size: 37 Copynumber: 3.8 Consensus size: 38
76001707 AAATTTATGT
76001717 AAACTTATAAAAGTTATAAAATA-ATAATAA-ATAATAA
1 AAACTTATAAAAGTTATAAAATATATAA-AATATAATAA
* *
76001754 AAACTTATGAATA-TTATAAAA-ATATAAAATATTATAA
1 AAACTTAT-AAAAGTTATAAAATATATAAAATATAATAA
* *
76001791 AATATTTAT-AAAGTTAATAAAATATATCTAAAATAT-TTAA
1 AA-ACTTATAAAAGTT-ATAAAATATA--TAAAATATAATAA
** * *
76001831 AATTTTATAAAAACTTATAAAAAATCATAAAA
1 AAACTTAT-AAAAGTTATAAAATAT-ATAAAA
76001863 ATTAGATATA
Statistics
Matches: 89, Mismatches: 8, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
36 5 0.06
37 30 0.34
38 14 0.16
39 13 0.15
40 13 0.15
41 14 0.16
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (38 bp):
AAACTTATAAAAGTTATAAAATATATAAAATATAATAA
Found at i:76004990 original size:19 final size:20
Alignment explanation
Indices: 76004953--76004990 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
76004943 ATAAGGTGGT
76004953 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
76004973 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
76004991 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:76007610 original size:9 final size:9
Alignment explanation
Indices: 76007588--76007866 Score: 96
Period size: 9 Copynumber: 29.8 Consensus size: 9
76007578 TAGTTCAAGT
*
76007588 TTTTTATGAT
1 TTTTTAT-AA
76007598 TTTTTATAA
1 TTTTTATAA
*
76007607 TTTTTATACG
1 TTTTTATA-A
* *
76007617 TTTATATTATT
1 TTTTTA-TA-A
76007628 TTTTTATAA
1 TTTTTATAA
*
76007637 TTTATTA-GA
1 TTT-TTATAA
76007646 TTTATTAT-A
1 TTT-TTATAA
76007655 TTTATTATAA
1 TTT-TTATAA
*
76007665 TATTTATAA
1 TTTTTATAA
*
76007674 GTTTTTATTATT
1 -TTTTTA-TA-A
76007686 TTTATTATAA
1 TTT-TTATAA
*
76007696 TATTTATAA
1 TTTTTATAA
*
76007705 -GTTTAT-A
1 TTTTTATAA
76007712 TTAATTT-TAA
1 TT--TTTATAA
76007722 TTTTTAATAA
1 TTTTT-ATAA
*
76007732 TTTTTATGAT
1 TTTTTAT-AA
76007742 TTTTTAATAA
1 TTTTT-ATAA
**
76007752 TTTTCCT-A
1 TTTTTATAA
76007760 -TTTT-TAA
1 TTTTTATAA
**
76007767 TTTTT-TCG
1 TTTTTATAA
*
76007775 TTTTT-TAT
1 TTTTTATAA
76007783 TTTTTATAA
1 TTTTTATAA
*
76007792 TATTTATAA
1 TTTTTATAA
76007801 TTTTATATAATA
1 TTTT-TAT-A-A
76007813 TTTTTTATAA
1 -TTTTTATAA
*
76007823 TTTATTA-GA
1 TTT-TTATAA
76007832 TTTATTAT-A
1 TTT-TTATAA
76007841 TTTATTATAA
1 TTT-TTATAA
*
76007851 TATTTATAA
1 TTTTTATAA
*
76007860 GTTTTAT
1 TTTTTAT
76007867 TACTTTTTAG
Statistics
Matches: 211, Mismatches: 31, Indels: 55
0.71 0.10 0.19
Matches are distributed among these distances:
6 1 0.00
7 5 0.02
8 25 0.12
9 89 0.42
10 62 0.29
11 18 0.09
12 7 0.03
13 4 0.02
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:76007662 original size:12 final size:12
Alignment explanation
Indices: 76007647--76007702 Score: 50
Period size: 12 Copynumber: 5.1 Consensus size: 12
76007637 TTTATTAGAT
*
76007647 TTATTATATTTA
1 TTATAATATTTA
76007659 TTATAATATTTA
1 TTATAATATTTA
* *
76007671 -TA-AGTTTTTA
1 TTATAATATTTA
76007681 TTAT--T-TTTA
1 TTATAATATTTA
76007690 TTATAATATTTA
1 TTATAATATTTA
76007702 T
1 T
76007703 AAGTTTATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
9 8 0.22
10 7 0.19
11 5 0.14
12 16 0.44
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (12 bp):
TTATAATATTTA
Found at i:76007684 original size:31 final size:31
Alignment explanation
Indices: 76007587--76007904 Score: 153
Period size: 31 Copynumber: 10.4 Consensus size: 31
76007577 CTAGTTCAAG
* * *
76007587 TTTT-TTATGATTTTTTATAATTTTTATACGT
1 TTTTATTAT-ATTTATTATAATATTTATAAGT
* * *
76007618 TTATATTAT-TTTTTTAT-A-ATTTATTAG-
1 TTTTATTATATTTATTATAATATTTATAAGT
*
76007645 ATTTATTATATTTATTATAATATTTATAAGT
1 TTTTATTATATTTATTATAATATTTATAAGT
*
76007676 TTTTATTATTTTTATTATAATATTTATAAGT
1 TTTTATTATATTTATTATAATATTTATAAGT
* * * * *
76007707 TTATATTA-ATTTTAATTTTTAATAATTTTTATGA
1 TTTTATTATA-TTT-A-TTATAAT-ATTTATAAGT
* * ** * *
76007741 TTTT-TTA-A-TAATTTTCCTATTTTTAATT
1 TTTTATTATATTTATTATAATATTTATAAGT
* * * *
76007769 TTTTCGTTTTTTATTTTTTATAATATTTATAA-T
1 TTTT-ATTATAT-TT-ATTATAATATTTATAAGT
* * *
76007802 TTTATATAATATTTTTTAT-A-ATTTATTAG-
1 TTT-TATTATATTTATTATAATATTTATAAGT
*
76007831 ATTTATTATATTTATTATAATATTTATAAG-
1 TTTTATTATATTTATTATAATATTTATAAGT
* * * *
76007861 TTTTATTACTTTTTAGTATAATTTTTATTAGT
1 TTTTATTA-TATTTATTATAATATTTATAAGT
*
76007893 TTATATTA-ATTT
1 TTTTATTATATTT
76007905 TTGTTATGAA
Statistics
Matches: 219, Mismatches: 47, Indels: 43
0.71 0.15 0.14
Matches are distributed among these distances:
27 7 0.03
28 37 0.17
29 17 0.08
30 38 0.17
31 66 0.30
32 14 0.06
33 18 0.08
34 22 0.10
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (31 bp):
TTTTATTATATTTATTATAATATTTATAAGT
Found at i:76007764 original size:20 final size:19
Alignment explanation
Indices: 76007624--76007755 Score: 69
Period size: 20 Copynumber: 6.9 Consensus size: 19
76007614 ACGTTTATAT
*
76007624 TATTTTTTTATAATTTATTA
1 TATTTTTTAATAATTT-TTA
* *
76007644 GATTTATT-AT-ATTTATTA
1 TATTTTTTAATAATTT-TTA
* *
76007662 TAATATTT-ATAAGTTTTTA
1 TATTTTTTAATAA-TTTTTA
* *
76007681 TTATTTTTATTATAATATTTA
1 -TATTTTT-TAATAATTTTTA
* * *
76007702 TAAGTTTATATTAA-TTTTA
1 T-ATTTTTTAATAATTTTTA
76007721 -A-TTTTTAATAATTTTTA
1 TATTTTTTAATAATTTTTA
76007738 TGATTTTTTAATAATTTT
1 T-ATTTTTTAATAATTTT
76007756 CCTATTTTTA
Statistics
Matches: 86, Mismatches: 16, Indels: 20
0.70 0.13 0.16
Matches are distributed among these distances:
16 8 0.09
17 6 0.07
18 14 0.16
19 11 0.13
20 33 0.38
21 10 0.12
22 4 0.05
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (19 bp):
TATTTTTTAATAATTTTTA
Found at i:76007827 original size:38 final size:40
Alignment explanation
Indices: 76007775--76007855 Score: 103
Period size: 38 Copynumber: 2.1 Consensus size: 40
76007765 AATTTTTTCG
** *
76007775 TTTTTTATTTTTTATAATATTTATAAT-TTTA-TATAATA
1 TTTTTTATAATTTATAAGATTTATAATATTTATTATAATA
* *
76007813 TTTTTTATAATTTATTAGATTTATTATATTTATTATAATA
1 TTTTTTATAATTTATAAGATTTATAATATTTATTATAATA
76007853 TTT
1 TTT
76007856 ATAAGTTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
38 22 0.61
39 4 0.11
40 10 0.28
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.65
Consensus pattern (40 bp):
TTTTTTATAATTTATAAGATTTATAATATTTATTATAATA
Found at i:76007848 original size:28 final size:28
Alignment explanation
Indices: 76007778--76007884 Score: 78
Period size: 30 Copynumber: 3.8 Consensus size: 28
76007768 TTTTTCGTTT
* *
76007778 TTTATT-T-TTTATAAT-ATTTATAA-T
1 TTTATTATATTTATTATAATTTATAAGA
* *
76007802 TTTATATAATATTTTTTATAATTTATTAGA
1 TTTAT-T-ATATTTATTATAATTTATAAGA
*
76007832 TTTATTATATTTATTATAATATTTATAAGT
1 TTTATTATATTTATTAT-A-ATTTATAAGA
* *
76007862 TTTATTACTTTTTAGTATAATTT
1 TTTATTA-TATTTATTATAATTT
76007885 TTATTAGTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
24 5 0.08
25 1 0.02
27 1 0.02
28 16 0.25
29 13 0.20
30 21 0.32
31 8 0.12
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.63
Consensus pattern (28 bp):
TTTATTATATTTATTATAATTTATAAGA
Found at i:76007886 original size:22 final size:21
Alignment explanation
Indices: 76007855--76007906 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
76007845 TTATAATATT
* *
76007855 TATAAGTTTTATTACTTTTTA
1 TATAATTTTTATTACTTTATA
*
76007876 GTATAATTTTTATTAGTTTATA
1 -TATAATTTTTATTACTTTATA
76007898 T-TAATTTTT
1 TATAATTTTT
76007907 GTTATGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 8 0.30
21 1 0.04
22 18 0.67
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (21 bp):
TATAATTTTTATTACTTTATA
Found at i:76010420 original size:49 final size:47
Alignment explanation
Indices: 76010268--76010577 Score: 197
Period size: 49 Copynumber: 6.5 Consensus size: 47
76010258 ATGCTGACGC
* ** *
76010268 CATGTCCCAGACATGGTCTTACACTGGCTAGCGCAT-TAAAGT--CAATG
1 CATGTCCCAGACAT-GTCTTACACTGGCT--CTCATATTCAGTGCCGATG
* * *
76010315 CCATGTCCCAGACATGTCTTACACTGACTTTCATATATCGAG-GCCAATG
1 -CATGTCCCAGACATGTCTTACACTGGCTCTCATAT-TC-AGTGCCGATG
* * * * *
76010364 TCGTGTCCCAAACAAGTCTTACACTGGCTGTCATCTGTCAGTGCCGATG
1 -CATGTCCCAGACATGTCTTACACTGGCTCTCATAT-TCAGTGCCGATG
* * * * *
76010413 CCATGTCCCAGACAGGTTTTACACTAGCT-TGTATATCTC-GATGCTGATG
1 -CATGTCCCAGACATGTCTTACACTGGCTCT-CATAT-TCAG-TGCCGATG
* * * * *
76010462 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTT-AATGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATATTCAGTGCCGATG
* * *
76010508 CATGTCCCAGACATGTCTTACACAGGCTCTCATAAT--GTGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATATTCAGT-GCCGATG
* *
76010554 CATGTCCTAGACATGCCTTACACT
1 CATGTCCCAGACATGTCTTACACT
76010578 AGCACACATA
Statistics
Matches: 208, Mismatches: 43, Indels: 24
0.76 0.16 0.09
Matches are distributed among these distances:
45 4 0.02
46 64 0.31
47 14 0.07
48 48 0.23
49 78 0.38
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATATTCAGTGCCGATG
Found at i:76010522 original size:46 final size:46
Alignment explanation
Indices: 76010458--76010580 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 46
76010448 TCTCGATGCT
* *
76010458 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTTAATGT-C
1 GATGCATGTCCCAGACATGTCTTACACTAGCGCTC-TCATAATGTGC
76010504 GATGCATGTCCCAGACATGTCTTACAC-AG-GCTCTCATAATGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCGCTCTCATAATGT-G-C
* * *
76010550 AATGCATGTCCTAGACATGCCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
76010581 ACACATATTG
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
43 8 0.12
44 3 0.04
45 2 0.03
46 52 0.78
47 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCGCTCTCATAATGTGC
Found at i:76016345 original size:40 final size:39
Alignment explanation
Indices: 76016300--76016505 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 39
76016290 ATTGATACCT
* * *
76016300 GGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATATCC
* *
76016340 AGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATATCC
*
76016380 GGGCTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATATCC
* *
76016420 GGGCTAAGACCCGAAGGCATTTGTGCAAGT-TATCAAATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTGT-T-ATATCC
* * **
76016460 GGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATATCC
76016500 -GGCTAA
1 GGGCTAA
76016506 ATTCCGAAGA
Statistics
Matches: 144, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 7 0.05
40 132 0.92
41 3 0.02
42 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
GGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATATCC
Found at i:76016433 original size:80 final size:79
Alignment explanation
Indices: 76016300--76016505 Score: 261
Period size: 80 Copynumber: 2.6 Consensus size: 79
76016290 ATTGATACCT
* *
76016300 GGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCAGGCTAAGACCCGAAGGCATTCGT
1 GGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCC-GGCTAAGACCCGAAGGCATTCGT
* * * *
76016364 GCGAGTTGTTATATCC
64 GCAAGTTATCAAATCC
* * *
76016380 GGGCTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTG
1 GGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCC-GGCTAAGACCCGAAGGCATTCGTG
76016445 CAAGTTATCAAATCC
65 CAAGTTATCAAATCC
* * * *
76016460 GGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGGCTAA
1 GGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGCTAA
76016506 ATTCCGAAGA
Statistics
Matches: 109, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
79 6 0.06
80 101 0.93
81 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
GGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGCTAAGACCCGAAGGCATTCGTGC
AAGTTATCAAATCC
Found at i:76019531 original size:46 final size:43
Alignment explanation
Indices: 76019464--76019554 Score: 155
Period size: 46 Copynumber: 2.0 Consensus size: 43
76019454 ACCTGGCGTG
76019464 TCACATTGAAGTGTTTTTCGAAAACCTTGTTTTCATTGAAAACCCT
1 TCACATTGAAGTGTTTTTCGAAAACCTTG---TCATTGAAAACCCT
76019510 TCACATTGAAGTGTTTTTCGAAAACCTTGTCATTGAAAACCCT
1 TCACATTGAAGTGTTTTTCGAAAACCTTGTCATTGAAAACCCT
76019553 TC
1 TC
76019555 TTTAAAATAA
Statistics
Matches: 45, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
43 16 0.36
46 29 0.64
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (43 bp):
TCACATTGAAGTGTTTTTCGAAAACCTTGTCATTGAAAACCCT
Found at i:76021060 original size:16 final size:16
Alignment explanation
Indices: 76021039--76021070 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
76021029 CCAAATTTTT
76021039 GGCTTTTCGGCATTTC
1 GGCTTTTCGGCATTTC
76021055 GGCTTTTCGGCATTTC
1 GGCTTTTCGGCATTTC
76021071 AAGATTTGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.25, G:0.25, T:0.44
Consensus pattern (16 bp):
GGCTTTTCGGCATTTC
Found at i:76024899 original size:2 final size:2
Alignment explanation
Indices: 76024892--76024923 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
76024882 GGGTACATTC
76024892 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76024924 GATTCATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76029975 original size:27 final size:28
Alignment explanation
Indices: 76029877--76030003 Score: 145
Period size: 27 Copynumber: 4.7 Consensus size: 28
76029867 TTAGTTTACC
* *
76029877 AAATTACCAAAATA-CCCTCGATTAGAA
1 AAATTACCAAAATACCCCTCAATTAGTA
* *
76029904 AAATTACCAAAATA-CCCTCGATTAGCA
1 AAATTACCAAAATACCCCTCAATTAGTA
*
76029931 AAATTACCAAAATACCCCT-AATTTGTA
1 AAATTACCAAAATACCCCTCAATTAGTA
* *
76029958 AAATTACAAAAATACCCCT-AATTTGTA
1 AAATTACCAAAATACCCCTCAATTAGTA
* *
76029985 AACTTACCGAAATACCCCT
1 AAATTACCAAAATACCCCT
76030004 GTAAGGTAGA
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 87 0.96
28 4 0.04
ACGTcount: A:0.45, C:0.24, G:0.06, T:0.25
Consensus pattern (28 bp):
AAATTACCAAAATACCCCTCAATTAGTA
Found at i:76030017 original size:54 final size:54
Alignment explanation
Indices: 76029959--76030071 Score: 122
Period size: 54 Copynumber: 2.1 Consensus size: 54
76029949 TAATTTGTAA
**
76029959 AATTACAAAAATACCCCTAAT-TTGTA-AACTTACCGAAATACCCCTGTAAGGTAG
1 AATTACAAAAATA-CCCTAATAGGGTAGAA-TTACCGAAATACCCCTGTAAGGTAG
** ** * *
76030013 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACAAAAATACCCTAATAGGGTAGAATTACCGAAATACCCCTGTAAGGTAG
76030067 AATTA
1 AATTA
76030072 TCGAGATACC
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
53 5 0.10
54 42 0.86
55 2 0.04
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (54 bp):
AATTACAAAAATACCCTAATAGGGTAGAATTACCGAAATACCCCTGTAAGGTAG
Found at i:76030018 original size:27 final size:27
Alignment explanation
Indices: 76029988--76030100 Score: 147
Period size: 27 Copynumber: 4.2 Consensus size: 27
76029978 ATTTGTAAAC
*
76029988 TTACCGAAATACCCCTGTAAGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
76030015 TTACCGAAATACCCTTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
76030042 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* * * *
76030069 TTATCGAGATACCCTCT-TGGGGTAAAA
1 TTACCGAAATACCC-CTGTAGGGTAGAA
76030096 TTACC
1 TTACC
76030101 ATTTTACCCC
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
27 73 0.97
28 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (27 bp):
TTACCGAAATACCCCTGTAGGGTAGAA
Found at i:76031022 original size:25 final size:25
Alignment explanation
Indices: 76030994--76031055 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
76030984 CATTCATATT
* * *
76030994 CTGATACTGATTCTATTACCTGATA
1 CTGATTCTGATTCTATCACCTAATA
* *
76031019 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTATCACCTAATA
76031044 CTGATTCTGATT
1 CTGATTCTGATT
76031056 TTGATTTTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.44
Consensus pattern (25 bp):
CTGATTCTGATTCTATCACCTAATA
Found at i:76031030 original size:6 final size:6
Alignment explanation
Indices: 76030991--76031109 Score: 66
Period size: 6 Copynumber: 19.3 Consensus size: 6
76030981 TTGCATTCAT
* * * *
76030991 ATTCTG ATACTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
76031041 ATTCTG ATTCTG ATTTTG ATTTTG -TCACTTG ATTCTG ATTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG
*
76031090 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
76031110 AATGTTTCTT
Statistics
Matches: 86, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
5 6 0.07
6 68 0.79
7 8 0.09
8 4 0.05
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:76031094 original size:31 final size:31
Alignment explanation
Indices: 76031013--76031095 Score: 112
Period size: 31 Copynumber: 2.7 Consensus size: 31
76031003 ATTCTATTAC
* *
76031013 CTGATACTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTTTGTCACCTAATT
* * *
76031044 CTGATTCTGATTTTGATTTTGTCACTTGATT
1 CTGATTCTGATTCTGATTTTGTCACCTAATT
*
76031075 CTGATTCTGATTCTCATTTTG
1 CTGATTCTGATTCTGATTTTG
76031096 ATTCTAGTTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
CTGATTCTGATTCTGATTTTGTCACCTAATT
Found at i:76043448 original size:40 final size:39
Alignment explanation
Indices: 76043403--76043610 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
76043393 CGGAATACAA
*
76043403 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
76043443 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
76043483 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
76043523 CCGGATGTAGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
76043563 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
76043603 CCGGATAT
1 CCGGATAT
76043611 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
39 4 0.03
40 136 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:76043543 original size:80 final size:81
Alignment explanation
Indices: 76043403--76043608 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 81
76043393 CGGAATACAA
* * *
76043403 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
76043467 -GCCTTCGGGTATTAGC
65 GGCCTTCGGGTATTAAC
* *
76043483 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
76043546 GGCCTTCGGGTCTTAAC
65 GGCCTTCGGGTATTAAC
** * ** * *
76043563 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
76043609 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 101 0.94
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
GCCTTCGGGTATTAAC
Found at i:76060580 original size:88 final size:87
Alignment explanation
Indices: 76060475--76060637 Score: 236
Period size: 87 Copynumber: 1.9 Consensus size: 87
76060465 CGAAGGCAAC
* * * * * *
76060475 GAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTCATAGATCTTATCACCCTAAGTAG
1 GAGCTTTAACCCCCTAAGCAGTAAGGTAACAAGC-CAAATTCACAGACCTTAACACCCTAAGTAG
76060540 TAGGGAAATAGATCGAAAATAAT
65 TAGGGAAATAGATCGAAAATAAT
* *
76060563 GAGCTTTAACCCCCTAAGCAGTAAGGTAACAAGCCAAATTTACAGACCTTAACCCCCTAAGTAGT
1 GAGCTTTAACCCCCTAAGCAGTAAGGTAACAAGCCAAATTCACAGACCTTAACACCCTAAGTAGT
*
76060628 AGGGTAATAG
66 AGGGAAATAG
76060638 GCTAAAAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
87 33 0.50
88 33 0.50
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.23
Consensus pattern (87 bp):
GAGCTTTAACCCCCTAAGCAGTAAGGTAACAAGCCAAATTCACAGACCTTAACACCCTAAGTAGT
AGGGAAATAGATCGAAAATAAT
Found at i:76060826 original size:87 final size:87
Alignment explanation
Indices: 76060735--76061077 Score: 447
Period size: 87 Copynumber: 3.9 Consensus size: 87
76060725 CAGATTGAAG
* * * *
76060735 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGGTTGAAGATGATGAGTCTTAAACCCCT
1 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGATGAGCCTTAAACCCCT
76060800 AAGCAGTAGGGTAACAGGCTAA
66 AAGCAGTAGGGTAACAGGCTAA
* * * *
76060822 ATTTACAGATCTCAACCCCCTAAGTAGTAGGGAAACAGATCGAAGGCGATGAGTCTTAAACTCCT
1 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGATGAGCCTTAAACCCCT
*
76060887 AAGTAGTAGGGTAACAGGCTAA
66 AAGCAGTAGGGTAACAGGCTAA
*
76060909 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAA-AGCGATGAGCCTTAAACCCC
1 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-CGATGAGCCTTAAACCCC
* *
76060973 TAAGCAGTTGGGTAACAGGCTGA
65 TAAGCAGTAGGGTAACAGGCTAA
* * * * * * ** *
76060996 TTTTACAAGATCTTAAACCCCTAAGCAGTAGGAAAATAGATC-AATGATGACAAGCCTTAACCCC
1 ATTTAC-AGATCTCAACCCCCTAAGCAGTAGGGAAACAGATCGAA-GACGATGAGCCTTAAACCC
*
76061060 CTAAGCAATAGGGTAACA
64 CTAAGCAGTAGGGTAACA
76061078 TGTTGAAAAT
Statistics
Matches: 227, Mismatches: 25, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
87 165 0.73
88 61 0.27
89 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (87 bp):
ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGATGAGCCTTAAACCCCT
AAGCAGTAGGGTAACAGGCTAA
Found at i:76060859 original size:43 final size:43
Alignment explanation
Indices: 76060735--76061027 Score: 198
Period size: 44 Copynumber: 6.7 Consensus size: 43
76060725 CAGATTGAAG
* *
76060735 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGGTTGAA
1 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGGCT-AA
* * * *
76060779 GA-TGA-TGAGTCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAA
1 -ATTTACAGA-TCTTAACCCCCTAAGCAGTAGGGAAACAGGCTAA
* * * *
76060822 ATTTACAGATCTCAACCCCCTAAGTAGTAGGGAAACAGATCGAA
1 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG-GCTAA
**** * * * * *
76060866 GGCGA-TGAGTCTTAAACTCCTAAGTAGTAGGGTAACAGGCTAA
1 ATTTACAGA-TCTTAACCCCCTAAGCAGTAGGGAAACAGGCTAA
* *
76060909 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAA
1 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG-GCTAA
*** * * * * * *
76060953 AGCGA-TGAGCCTTAAACCCCTAAGCAGTTGGGTAACAGGCTGA
1 ATTTACAGA-TCTTAACCCCCTAAGCAGTAGGGAAACAGGCTAA
* *
76060996 TTTTACAAGATCTTAAACCCCTAAGCAGTAGG
1 ATTTAC-AGATCTTAACCCCCTAAGCAGTAGG
76061028 AAAATAGATC
Statistics
Matches: 184, Mismatches: 54, Indels: 21
0.71 0.21 0.08
Matches are distributed among these distances:
42 1 0.01
43 67 0.36
44 113 0.61
45 3 0.02
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (43 bp):
ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGGCTAA
Found at i:76062771 original size:2 final size:2
Alignment explanation
Indices: 76062764--76062889 Score: 62
Period size: 2 Copynumber: 64.5 Consensus size: 2
76062754 CAATGCATGC
* * *
76062764 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT TT TT A- AT AC AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * * * * *
76062804 AC AT AT AC AT AG AT AT AT -T AT GT AC AT AT -T AT CAT GT GT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT
* * * * * *
76062845 GT TT TT AT AT AT AT GT AT AT AG AT AT AT GT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76062887 AT A
1 AT A
76062890 GTAATTTTTA
Statistics
Matches: 94, Mismatches: 25, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
1 4 0.04
2 88 0.94
3 2 0.02
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.49
Consensus pattern (2 bp):
AT
Found at i:76063070 original size:23 final size:23
Alignment explanation
Indices: 76063029--76063077 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
76063019 TTGTTACACC
*
76063029 TTTTACTATTATTACTATTGTAT
1 TTTTACTATTATTACTATTATAT
**
76063052 TTTTACTATTATTGTTATTATAT
1 TTTTACTATTATTACTATTATAT
76063075 TTT
1 TTT
76063078 CCTCTTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.24, C:0.06, G:0.04, T:0.65
Consensus pattern (23 bp):
TTTTACTATTATTACTATTATAT
Found at i:76063291 original size:3 final size:3
Alignment explanation
Indices: 76063283--76063408 Score: 53
Period size: 3 Copynumber: 42.7 Consensus size: 3
76063273 TGTATTTACC
* * * *
76063283 ATT ATT ATT ACT ATT ATT -TT CATT -TT -TT ATT ACT ATT ACT AAT
1 ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT
* ** * * * *
76063326 ATC ATT CCT -TT ATT ATT TTCT ATT ATT ATT ATC ACT ATT ATT AAT
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
76063371 ATA AAT ATT AAT ACT CTT ATT ATT ATT TTT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
76063409 CATCAATATT
Statistics
Matches: 87, Mismatches: 31, Indels: 10
0.68 0.24 0.08
Matches are distributed among these distances:
2 7 0.08
3 76 0.87
4 4 0.05
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:76065924 original size:25 final size:24
Alignment explanation
Indices: 76065896--76065982 Score: 97
Period size: 25 Copynumber: 3.5 Consensus size: 24
76065886 AATTATTTGG
76065896 AAAGCCTTTGTGCTTAATCTTATGA
1 AAAGCCTTTGTGC-TAATCTTATGA
* *
76065921 AAAGCCTTTGTGGCGTATTGTCTA-G-
1 AAAGCCTTTGT-GC-TAATCT-TATGA
76065946 AAAGCCTTTGTGACTAATCTTATGA
1 AAAGCCTTTGTG-CTAATCTTATGA
76065971 AAAGCCTTTGTG
1 AAAGCCTTTGTG
76065983 GCATCTTATC
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
23 2 0.04
24 6 0.12
25 35 0.67
26 7 0.13
27 2 0.04
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (24 bp):
AAAGCCTTTGTGCTAATCTTATGA
Found at i:76065970 original size:50 final size:49
Alignment explanation
Indices: 76065895--76066031 Score: 166
Period size: 50 Copynumber: 2.7 Consensus size: 49
76065885 GAATTATTTG
* *
76065895 GAAAGCCTTTGTGCTTAATCTTATGAAAAGCCTTTGTGGCGTATTGTCTA
1 GAAAGCCTTTGTGC-TAATCTTATGAAAAGCCTTTGTGGCATATTATCTA
*
76065945 GAAAGCCTTTGTGACTAATCTTATGAAAAGCCTTTGTGGCATCTTATCTA
1 GAAAGCCTTTGTG-CTAATCTTATGAAAAGCCTTTGTGGCATATTATCTA
* * * ** *
76065995 GAAAACTTTTTTGGCTGTTCTTATGAAAAGCCCTTGT
1 GAAAGCCTTTGT-GCTAATCTTATGAAAAGCCTTTGT
76066032 CAAATATTGT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
50 74 0.97
51 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (49 bp):
GAAAGCCTTTGTGCTAATCTTATGAAAAGCCTTTGTGGCATATTATCTA
Found at i:76067596 original size:18 final size:19
Alignment explanation
Indices: 76067546--76067590 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
76067536 ACAAAATAAT
*
76067546 TTCAAAATAATT-TTAAAA
1 TTCAAAATAATTATAAAAA
76067564 TTCAAAATAATTATAAAAA
1 TTCAAAATAATTATAAAAA
76067583 TTCCAAAA
1 TT-CAAAA
76067591 CTTATATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 12 0.50
19 7 0.29
20 5 0.21
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (19 bp):
TTCAAAATAATTATAAAAA
Found at i:76080901 original size:17 final size:18
Alignment explanation
Indices: 76080879--76080917 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
76080869 TATCTGGGTT
76080879 CTTCAACT-CTGGAGTCC
1 CTTCAACTCCTGGAGTCC
76080896 CTTCAACTCCTGGAGTCC
1 CTTCAACTCCTGGAGTCC
76080914 CTTC
1 CTTC
76080918 TTTCTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.15, C:0.38, G:0.15, T:0.31
Consensus pattern (18 bp):
CTTCAACTCCTGGAGTCC
Found at i:76085558 original size:14 final size:14
Alignment explanation
Indices: 76085541--76085583 Score: 54
Period size: 12 Copynumber: 3.1 Consensus size: 14
76085531 AAATATATTT
76085541 ATTAGAGTAACAAA
1 ATTAGAGTAACAAA
*
76085555 ATTA-A-TAAAAAA
1 ATTAGAGTAACAAA
76085567 ATTAGAGTAACCAAA
1 ATTAGAGTAA-CAAA
76085582 AT
1 AT
76085584 AATTATCTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
12 10 0.42
13 2 0.08
14 7 0.29
15 5 0.21
ACGTcount: A:0.60, C:0.07, G:0.09, T:0.23
Consensus pattern (14 bp):
ATTAGAGTAACAAA
Found at i:76086011 original size:17 final size:18
Alignment explanation
Indices: 76085989--76086022 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
76085979 AATTTTGTAA
*
76085989 GTTTTATTG-AGATTTTT
1 GTTTTAATGTAGATTTTT
76086006 GTTTTAATGTAGATTTT
1 GTTTTAATGTAGATTTT
76086023 ATTTGTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.62
Consensus pattern (18 bp):
GTTTTAATGTAGATTTTT
Found at i:76093424 original size:53 final size:53
Alignment explanation
Indices: 76093242--76093448 Score: 202
Period size: 53 Copynumber: 3.8 Consensus size: 53
76093232 ATTAGGGTTT
* * * * *
76093242 AAGGATACCAAGTAAGACCATGCCAAGGCATGGC-ATCGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAAT-GGTAAG-TTCATAAGGC
* * * * * *
76093296 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
76093351 AAAGATCCCATGTAAGACCAT-TCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGT-CAAGACATGGCAATGGTAAGTTCATAAGGC
* *
76093404 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
76093449 TAAAAAGGAA
Statistics
Matches: 121, Mismatches: 27, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
53 44 0.36
54 37 0.31
55 40 0.33
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:76097761 original size:12 final size:12
Alignment explanation
Indices: 76097744--76097768 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76097734 TGTACTAAAC
76097744 ATACAAAACTAA
1 ATACAAAACTAA
76097756 ATACAAAACTAA
1 ATACAAAACTAA
76097768 A
1 A
76097769 CCCCAAAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (12 bp):
ATACAAAACTAA
Found at i:76104400 original size:40 final size:40
Alignment explanation
Indices: 76104336--76104445 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
76104326 ACTCGATATG
* * * *
76104336 TCACACACTAAGTGTCGTACATAGCTGAAGATACCTCAAA
1 TCACACACTAAGTGCCATATATAGCCGAAGATACCTCAAA
* ** *
76104376 TCACACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
1 TCACACACTAAGTGCCATATATAGCCGAAGATACCTCAAA
*
76104416 TCGCACACTAAGTGCCATATATAGCCGAAG
1 TCACACACTAAGTGCCATATATAGCCGAAG
76104446 CTCTGTCGTA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.22
Consensus pattern (40 bp):
TCACACACTAAGTGCCATATATAGCCGAAGATACCTCAAA
Found at i:76104446 original size:40 final size:40
Alignment explanation
Indices: 76104374--76104469 Score: 165
Period size: 40 Copynumber: 2.4 Consensus size: 40
76104364 AGATACCTCA
*
76104374 AATCACACACTAAGTGCCATATATAGCCGAAGCTATGTCG
1 AATCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCG
*
76104414 AATCGCACACTAAGTGCCATATATAGCCGAAGCTCTGTCG
1 AATCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCG
*
76104454 TATCGCACACTAAGTG
1 AATCGCACACTAAGTG
76104470 ACACAAATAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (40 bp):
AATCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCG
Found at i:76117313 original size:12 final size:12
Alignment explanation
Indices: 76117296--76117329 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
76117286 TAAAGAGGTC
76117296 CACACGGGTAGG
1 CACACGGGTAGG
76117308 CACACGGGTAGG
1 CACACGGGTAGG
*
76117320 TACACGGGTA
1 CACACGGGTA
76117330 TGTGTCTAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.26, C:0.24, G:0.38, T:0.12
Consensus pattern (12 bp):
CACACGGGTAGG
Found at i:76121223 original size:33 final size:33
Alignment explanation
Indices: 76121181--76121247 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
76121171 ACGTGTAAGA
76121181 CCATATCTGGGATATAGTATCGATATGAGATTT
1 CCATATCTGGGATATAGTATCGATATGAGATTT
76121214 CCATATCTGGGATATAGTATCGATATGAGATTT
1 CCATATCTGGGATATAGTATCGATATGAGATTT
76121247 C
1 C
76121248 GTGTAAGGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (33 bp):
CCATATCTGGGATATAGTATCGATATGAGATTT
Found at i:76129886 original size:124 final size:123
Alignment explanation
Indices: 76129665--76129888 Score: 315
Period size: 124 Copynumber: 1.8 Consensus size: 123
76129655 GAATTATGTG
* * * * * * *
76129665 AAATGAAATATGGATGTGTATTGATTATTGATTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AAATGAAATATGAATGTCTAATGATTATTGATCATGTGTGCATGAGCAATTGAATGATACCCGGG
* * **
76129730 CTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 CTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
76129788 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGAT-CATGTGTGCATGAGCAATTGAATGATACCCGG
76129853 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
65 GCTAAGTCCCGAAGACGATTA-TGCTGGAAATTATAT
76129889 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
123 32 0.37
124 55 0.63
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGAATGTCTAATGATTATTGATCATGTGTGCATGAGCAATTGAATGATACCCGGG
CTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:76130005 original size:40 final size:39
Alignment explanation
Indices: 76129883--76130007 Score: 143
Period size: 40 Copynumber: 3.3 Consensus size: 39
76129873 TTGCTGGAAA
* *
76129883 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTTCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* *
76129923 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCA----
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
*
76129958 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
76129998 TTATATCCGG
1 TTATATCCGG
76130008 TTGTATTCCG
Statistics
Matches: 71, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
35 32 0.45
39 4 0.06
40 35 0.49
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:76137270 original size:93 final size:93
Alignment explanation
Indices: 76137111--76137281 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
76137101 GCCCATAAGT
* * * *
76137111 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76137176 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
76137204 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76137269 CGAGTTCGGATGC
66 CGAGTTCGGATGC
76137282 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:76137278 original size:46 final size:46
Alignment explanation
Indices: 76137103--76137278 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
76137093 TGTAACCCGC
* * * *
76137103 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
76137149 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
76137199 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
76137242 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
76137279 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:76137297 original size:46 final size:46
Alignment explanation
Indices: 76137154--76137290 Score: 140
Period size: 47 Copynumber: 3.0 Consensus size: 46
76137144 CGCATCCATG
76137154 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCTC
* * * * *
76137202 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--TA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCTC
76137247 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
76137291 CTAGTGACAT
Statistics
Matches: 74, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.38
47 30 0.41
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTC
Found at i:76141307 original size:71 final size:71
Alignment explanation
Indices: 76141223--76141386 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76141213 CGATTTGTCT
76141223 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76141288 CTTTCA
66 CTTTCA
76141294 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76141359 CTTTCA
66 CTTTCA
76141365 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76141387 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:76141424 original size:71 final size:70
Alignment explanation
Indices: 76141223--76141420 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
76141213 CGATTTGTCT
* * * *
76141223 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76141288 CTTTCA
65 CTTTCA
* * * *
76141294 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76141359 CTTTCA
65 CTTTCA
* *
76141365 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
76141421 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:76148408 original size:71 final size:71
Alignment explanation
Indices: 76148324--76148487 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76148314 CGATTTGTCT
76148324 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76148389 CTTTCA
66 CTTTCA
76148395 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76148460 CTTTCA
66 CTTTCA
76148466 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76148488 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:76148525 original size:71 final size:70
Alignment explanation
Indices: 76148324--76148521 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
76148314 CGATTTGTCT
* * * *
76148324 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76148389 CTTTCA
65 CTTTCA
* * * *
76148395 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76148460 CTTTCA
65 CTTTCA
* *
76148466 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
76148522 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:76150564 original size:11 final size:11
Alignment explanation
Indices: 76150548--76150577 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
76150538 TTGCTTATTC
76150548 TTTATTTTTAT
1 TTTATTTTTAT
*
76150559 TTTATTTTTCT
1 TTTATTTTTAT
76150570 TTTATTTT
1 TTTATTTT
76150578 CAGCAATGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:76153906 original size:40 final size:40
Alignment explanation
Indices: 76153832--76154050 Score: 363
Period size: 40 Copynumber: 5.5 Consensus size: 40
76153822 AACCCAAGTA
* *
76153832 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
76153871 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
76153911 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
76153951 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
76153991 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
76154030 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
76154051 GTCATCCGAA
Statistics
Matches: 171, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 36 0.21
40 134 0.78
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:76162398 original size:40 final size:40
Alignment explanation
Indices: 76162324--76162541 Score: 345
Period size: 40 Copynumber: 5.5 Consensus size: 40
76162314 AACCCAAGTA
* *
76162324 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
76162363 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
76162403 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
76162443 CCTTCGGGACTTAGCCCGGATATA-TCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
76162482 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
76162521 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
76162542 GTCATCCGAA
Statistics
Matches: 167, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 72 0.43
40 94 0.56
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:76162484 original size:79 final size:80
Alignment explanation
Indices: 76162324--76162541 Score: 336
Period size: 79 Copynumber: 2.8 Consensus size: 80
76162314 AACCCAAGTA
* * *
76162324 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCAAAAATGCCTTCGGGACTTAGCCCGGATATA
76162387 GTCACTAGCACAAATG
65 GTCACTAGCACAAATG
76162403 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCAAAAATGCCTTCGGGACTTAGCCCGGATATA-
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCAAAAATGCCTTCGGGACTTAGCCCGGATATAG
*
76162467 TCACTAGCACAACTG
66 TCACTAGCACAAATG
* **
76162482 CCTTCGGGACTTAGCCCGGATATAGTCACTAGC-ACCATGCCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCAAAAATGCCTTCGGGACTTAGCCCGGAT
76162542 GTCATCCGAA
Statistics
Matches: 130, Mismatches: 7, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
78 25 0.19
79 59 0.45
80 43 0.33
81 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCAAAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:76172182 original size:66 final size:65
Alignment explanation
Indices: 76172072--76172203 Score: 167
Period size: 66 Copynumber: 2.0 Consensus size: 65
76172062 AAAAACTAAA
* *
76172072 ATAATCCTAACTAAAACTTACCCTTGATGATAGAAAACTATGGGACTCA-AAAATATAATTACAA
1 ATAATCCTAACTAAAACTTACCCATGATAATAGAAAACTATGGGA-TCAGAAAATATAATTACAA
76172136 C
65 C
* * * * * *
76172137 ATAATCCTAACTAAAAACTTACCCATGATAATAGGACATTGTGGGATTAGAAAATATAATTGCAA
1 ATAATCCTAACT-AAAACTTACCCATGATAATAGAAAACTATGGGATCAGAAAATATAATTACAA
76172202 C
65 C
76172203 A
1 A
76172204 CAAATAGACT
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
65 14 0.25
66 43 0.75
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.27
Consensus pattern (65 bp):
ATAATCCTAACTAAAACTTACCCATGATAATAGAAAACTATGGGATCAGAAAATATAATTACAAC
Found at i:76175175 original size:29 final size:29
Alignment explanation
Indices: 76175143--76175249 Score: 108
Period size: 29 Copynumber: 3.7 Consensus size: 29
76175133 ATACCCTCCG
** *
76175143 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* *
76175172 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* * *
76175201 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACATAGTGCCATATTTTTCC
* *
76175230 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACATAGTGCCA
76175250 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACATAGTGCCATATTTTTCC
Found at i:76176446 original size:21 final size:20
Alignment explanation
Indices: 76176407--76176463 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
76176397 AGAATGAACA
76176407 CTTT-TTTTT-TTC-TTT-T
1 CTTTGTTTTTCTTCATTTCT
76176423 CTTTGTTTTTCTTCATATTCT
1 CTTTGTTTTTCTTCAT-TTCT
* *
76176444 CTTTTTTTTTTTTCATTTCT
1 CTTTGTTTTTCTTCATTTCT
76176464 TTATTCTTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 4 0.12
17 5 0.15
18 3 0.09
19 1 0.03
20 6 0.18
21 15 0.44
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.77
Consensus pattern (20 bp):
CTTTGTTTTTCTTCATTTCT
Found at i:76179977 original size:40 final size:40
Alignment explanation
Indices: 76179928--76180010 Score: 139
Period size: 40 Copynumber: 2.1 Consensus size: 40
76179918 TTAACCCGAT
* *
76179928 TATAATAACTAGCACAATTGCCTTCGGATCTTAGTCTGGA
1 TATAATAACTAGCACAAGTGCCTTCGGATCTTAGTCCGGA
*
76179968 TATAGTAACTAGCACAAGTGCCTTCGGATCTTAGTCCGGA
1 TATAATAACTAGCACAAGTGCCTTCGGATCTTAGTCCGGA
76180008 TAT
1 TAT
76180011 CATCCGAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (40 bp):
TATAATAACTAGCACAAGTGCCTTCGGATCTTAGTCCGGA
Found at i:76182616 original size:18 final size:19
Alignment explanation
Indices: 76182593--76182628 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
76182583 ATTGTTTTTA
76182593 TACCTT-TAGGTATATCAC
1 TACCTTGTAGGTATATCAC
76182611 TACCTTGTAGGTATATCA
1 TACCTTGTAGGTATATCA
76182629 TTAATATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (19 bp):
TACCTTGTAGGTATATCAC
Found at i:76183691 original size:18 final size:18
Alignment explanation
Indices: 76183668--76183703 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
76183658 CCTATTGTAT
76183668 TACTGATTTATGCTTACA
1 TACTGATTTATGCTTACA
76183686 TACTGATTTATGCTTACA
1 TACTGATTTATGCTTACA
76183704 CTTGTGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (18 bp):
TACTGATTTATGCTTACA
Found at i:76186649 original size:40 final size:40
Alignment explanation
Indices: 76186548--76186726 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
76186538 CGAATGATAT
* * * *
76186548 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
76186589 CTGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
76186629 CCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
76186669 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
76186709 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
76186727 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
40 90 0.79
41 24 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:76186686 original size:80 final size:81
Alignment explanation
Indices: 76186548--76186726 Score: 227
Period size: 80 Copynumber: 2.2 Consensus size: 81
76186538 CGAATGATAT
* * * *
76186548 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCTGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
76186613 GTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAA
* * *
76186629 CCGGGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
76186692 TGTGCGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
76186709 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
76186727 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 58 0.69
81 25 0.30
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAA
Found at i:76186739 original size:80 final size:80
Alignment explanation
Indices: 76186582--76186766 Score: 187
Period size: 80 Copynumber: 2.3 Consensus size: 80
76186572 GTGCTAAGTG
* * * * *
76186582 ACTAAATCTGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
* **
76186647 GCATTTATGCGAGTT
66 ACATCGATGCGAGTT
* * *
76186662 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAA
*
76186726 GACAATCGA-GCGAGTC
65 GAC-ATCGATGCGAGTT
* * * *
76186742 GCTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTCAATTCCCGAAGG
76186767 TACGTGATTC
Statistics
Matches: 86, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
79 8 0.09
80 75 0.87
81 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
ACATCGATGCGAGTT
Found at i:76186747 original size:40 final size:40
Alignment explanation
Indices: 76186669--76186752 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
76186659 GTTACTAAAT
* * *
76186669 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
76186709 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
76186749 CCGG
1 CCGG
76186753 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:76194688 original size:40 final size:40
Alignment explanation
Indices: 76194592--76194767 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
76194582 TCGAATGTAT
* * * *
76194592 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
76194633 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
76194673 CCGGGTTAAGTCCCGAAGGCA--T-TGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
76194710 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
76194750 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
76194768 ACAATCGAGC
Statistics
Matches: 113, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
37 32 0.28
38 1 0.01
39 1 0.01
40 54 0.48
41 25 0.22
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:76194788 original size:40 final size:40
Alignment explanation
Indices: 76194710--76194793 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
76194700 GTTACTAAAT
* * *
76194710 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
76194750 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
76194790 CCGG
1 CCGG
76194794 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:76196255 original size:31 final size:31
Alignment explanation
Indices: 76196220--76196368 Score: 208
Period size: 31 Copynumber: 4.8 Consensus size: 31
76196210 CTATGCTAGT
*
76196220 TTTTTATATGTAAAACTAATGTATAATCTAC
1 TTTTTATATGTAAAACTAATGTATGATCTAC
* *
76196251 TTTTTCATTTGCAAAACTAATGTATGATCTAC
1 TTTTT-ATATGTAAAACTAATGTATGATCTAC
* * *
76196283 TTTTTATATGTGAACCTAATGTATTATCTAC
1 TTTTTATATGTAAAACTAATGTATGATCTAC
*
76196314 TTTTTATATGCAAAACTAATGTATGATCTAC
1 TTTTTATATGTAAAACTAATGTATGATCTAC
* *
76196345 TTTTTATACGTAAACCTAATGTAT
1 TTTTTATATGTAAAACTAATGTAT
76196369 CATATTTTTT
Statistics
Matches: 102, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
31 74 0.73
32 28 0.27
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.45
Consensus pattern (31 bp):
TTTTTATATGTAAAACTAATGTATGATCTAC
Found at i:76196352 original size:62 final size:63
Alignment explanation
Indices: 76196220--76196368 Score: 246
Period size: 62 Copynumber: 2.4 Consensus size: 63
76196210 CTATGCTAGT
* *
76196220 TTTTTATATGTAAAACTAATGTATAATCTACTTTTTCATTTGCAAAACTAATGTATGATCTAC
1 TTTTTATATGTAAACCTAATGTATAATCTACTTTTTCATATGCAAAACTAATGTATGATCTAC
* *
76196283 TTTTTATATGTGAACCTAATGTATTATCTACTTTTT-ATATGCAAAACTAATGTATGATCTAC
1 TTTTTATATGTAAACCTAATGTATAATCTACTTTTTCATATGCAAAACTAATGTATGATCTAC
*
76196345 TTTTTATACGTAAACCTAATGTAT
1 TTTTTATATGTAAACCTAATGTAT
76196369 CATATTTTTT
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
62 47 0.59
63 33 0.41
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.45
Consensus pattern (63 bp):
TTTTTATATGTAAACCTAATGTATAATCTACTTTTTCATATGCAAAACTAATGTATGATCTAC
Found at i:76199391 original size:40 final size:40
Alignment explanation
Indices: 76199308--76199419 Score: 122
Period size: 40 Copynumber: 2.8 Consensus size: 40
76199298 TCGAATGATG
* * *
76199308 TCCGG-CTAAGTCCCGAAGGCTTTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
**
76199348 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
*
76199388 TCC-GAGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TCCGGA-CTAAGTCCCGAAGGCATTTGTGCGAG
76199420 CTATTATAAC
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
39 3 0.05
40 38 0.61
41 20 0.32
42 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:76202818 original size:18 final size:19
Alignment explanation
Indices: 76202797--76202841 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 19
76202787 AAGAAAAAGA
76202797 AAAAGAAAAACCT-A-CCCC
1 AAAA-AAAAACCTAACCCCC
76202815 -AAAAAAAACCTAACCCCC
1 AAAAAAAAACCTAACCCCC
76202833 AAAAAAAAA
1 AAAAAAAAA
76202842 GAAGAAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 8 0.33
17 4 0.17
18 4 0.17
19 8 0.33
ACGTcount: A:0.64, C:0.29, G:0.02, T:0.04
Consensus pattern (19 bp):
AAAAAAAAACCTAACCCCC
Found at i:76202823 original size:16 final size:18
Alignment explanation
Indices: 76202802--76202840 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
76202792 AAAGAAAAAG
76202802 AAAAACCT-A-CCCCAAA
1 AAAAACCTAACCCCCAAA
76202818 AAAAACCTAACCCCCAAA
1 AAAAACCTAACCCCCAAA
76202836 AAAAA
1 AAAAA
76202841 AGAAGAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.38
17 1 0.05
18 12 0.57
ACGTcount: A:0.62, C:0.33, G:0.00, T:0.05
Consensus pattern (18 bp):
AAAAACCTAACCCCCAAA
Found at i:76204302 original size:195 final size:195
Alignment explanation
Indices: 76203970--76204359 Score: 762
Period size: 195 Copynumber: 2.0 Consensus size: 195
76203960 GCAATCCTGG
76203970 TATCACCAGACAGGAATCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
1 TATCACCAGACAGGAATCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
76204035 TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
66 TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
76204100 GGTGTACGGGGACTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
131 GGTGTACGGGGACTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
*
76204165 TATCACCAGACGGGAATCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
1 TATCACCAGACAGGAATCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
76204230 TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
66 TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
*
76204295 GGTGTACGGGGATTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
131 GGTGTACGGGGACTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
76204360 AATTGATTAA
Statistics
Matches: 193, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
195 193 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (195 bp):
TATCACCAGACAGGAATCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
GGTGTACGGGGACTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
Found at i:76207092 original size:71 final size:69
Alignment explanation
Indices: 76206898--76207161 Score: 332
Period size: 71 Copynumber: 3.7 Consensus size: 69
76206888 GAGTTAAGCC
* *
76206898 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
76206963 GAGGTAT
63 GAGGTAT
* * ** * *
76206970 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGGCACGCTG
76207034 AGGTAT
64 AGGTAT
76207040 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
76207105 AGGTAT
64 AGGTAT
* * ** * *
76207111 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
76207162 TTTAATTTTT
Statistics
Matches: 167, Mismatches: 20, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
69 35 0.21
70 56 0.34
71 60 0.36
72 16 0.10
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (69 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAG
GTAT
Found at i:76207206 original size:122 final size:123
Alignment explanation
Indices: 76207040--76207285 Score: 397
Period size: 122 Copynumber: 2.0 Consensus size: 123
76207030 GTTGAGGTAT
76207040 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
* *
76207105 AGGTATTTTTA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
76207161 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * * *
76207226 GAGGTATTTTCATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
76207285 T
1 T
76207286 CAGGTCACGC
Statistics
Matches: 114, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
121 12 0.11
122 61 0.54
123 13 0.11
124 28 0.25
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (123 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AGGTATTTTCATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:76207209 original size:193 final size:193
Alignment explanation
Indices: 76206988--76207571 Score: 643
Period size: 193 Copynumber: 2.9 Consensus size: 193
76206978 TTTGTGTTTT
* * *
76206988 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTAATTTTTGT
*
76207053 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGT
65 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGT
* **
76207118 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTT-TTGTTTTTCAA
130 TTATGTTTTAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTACTTTTTCAA
* * * *
76207181 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCATTTTTGTG
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAATTTTTGT-
* ** * *
76207246 TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAT
65 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTA--TT---T
* *
76207311 TTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGT-AGGTTGAA-CCTTT
125 TT-AG-TTT--A--T--GTT-TT--A-AATTAACTCATATTGCGAGAGGTGA-GTT-AAGCCTTT
76207374 TAATTTCTACTTTTTCAA
176 TAATTTCTACTTTTTCAA
* *
76207392 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTAATTTTTGT
* *
76207457 TGTCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC
65 TTTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT-
* * * * * *
76207522 AATTTTTATGTTTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCT
126 TA-GTTTATGTTTTAAATT-AACTCATATTGCGAGAGGTGAGTTAAGCCT
76207572 CAGGTCACAC
Statistics
Matches: 322, Mismatches: 39, Indels: 53
0.78 0.09 0.13
Matches are distributed among these distances:
192 12 0.04
193 96 0.30
195 2 0.01
198 3 0.01
199 4 0.01
200 27 0.08
201 1 0.00
202 3 0.01
203 3 0.01
204 1 0.00
205 1 0.00
206 3 0.01
207 3 0.01
209 7 0.02
210 35 0.11
211 60 0.19
212 13 0.04
214 48 0.15
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (193 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAATTTTTGTT
TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTT
TATGTTTTAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTACTTTTTCAA
Found at i:76207607 original size:72 final size:70
Alignment explanation
Indices: 76207161--76207607 Score: 307
Period size: 74 Copynumber: 6.2 Consensus size: 70
76207151 GAGTTAAGCC
* * * *
76207161 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTCTG-TTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
76207225 TGAGGTA
64 TGAGGTA
* * ** *
76207232 TTTTCATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCT
1 TTTTCA-ATTTCTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
76207297 GAGGTA
65 GAGGTA
* ** * * * * ** * *** ** *
76207303 TTTTCAATTTCTGTTTT-CAATTTACGT--TGTT-CAAGA-ATCAACTCATATTGCGAGAGGTAG
1 TTTTCAATTTCTGTTTTAAAATCAAC-TCATATTGCGAGAGGTGAGTTGAGCCT-C-AG-GACAC
* ***
76207363 GTTGA-ACC
62 GCTGAGGTA
*
76207371 TTTT-AATTTCTACTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCT--GTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
76207435 CTGAGGTA
63 CTGAGGTA
* * * * *
76207443 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTTCAATTTCTGTT-T---TAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
76207508 GCTGAGGTA
62 GCTGAGGTA
* ** * *
76207517 TTTTCAATTTTTATGTTTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
1 TTTTCAA--TTTCTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACAC
76207582 GCTGAGGTA
62 GCTGAGGTA
*
76207591 TTTTCAATTTCCGTTTT
1 TTTTCAATTTCTGTTTT
76207608 TCAATTTCTG
Statistics
Matches: 282, Mismatches: 70, Indels: 47
0.71 0.18 0.12
Matches are distributed among these distances:
66 5 0.02
67 12 0.04
68 9 0.03
69 13 0.05
70 11 0.04
71 71 0.25
72 56 0.20
73 17 0.06
74 80 0.28
75 1 0.00
76 7 0.02
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (70 bp):
TTTTCAATTTCTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
AGGTA
Found at i:76207610 original size:14 final size:14
Alignment explanation
Indices: 76207591--76207625 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
76207581 CGCTGAGGTA
76207591 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
76207605 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
76207619 CTTTCAA
1 TTTTCAA
76207626 AAAAAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:76207639 original size:165 final size:163
Alignment explanation
Indices: 76207444--76208103 Score: 902
Period size: 165 Copynumber: 4.0 Consensus size: 163
76207434 GCTGAGGTAA
* * * *
76207444 TTTCAATTTCTGT-TGTCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *** *
76207508 GCTGAGGTATTTTCAATTTTTATGT-TTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCT
66 GCTGAGGTAATTTCAATTTTT-TGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCCT
76207572 CAGGTCACACGCTGAGGTATTTTCAATTTCCGTT
130 CAGGTCACACGCTGAGGTATTTTCAATTTCCGTT
76207606 TTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* *
76207671 ACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAG
64 ACGCTGAGGTAATTTCAATTT-T-TTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAG
* *
76207736 CCTCAGGTCATACGCCGAGGTATTTTCAATTTCCGTT
127 CCTCAGGTCACACGCTGAGGTATTTTCAATTTCCGTT
* *
76207773 TTTCAATTTTTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *
76207838 GCTGAGGTAATTTCAATTTCTATTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCC
66 GCTGAGGTAATTTCAATTT-T-TTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCC
* *
76207903 TCAGATCACACG-TCGAGGTATTTTCAATTTCCATT
129 TCAGGTCACACGCT-GAGGTATTTTCAATTTCCGTT
*
76207938 TTTCAATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
1 TTTCAATTTCTGTCTTTC----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * ***
76208003 ACACGCTGAGGTAATTTCAATTTTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGA
62 ACACGCTGAGGTAATTTCAATTTT-TTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGA
* * *
76208066 GCCTCAAG--ACACGTTGAGGTATTTTCAATTTCTGTT
126 GCCTCAGGTCACACGCTGAGGTATTTTCAATTTCCGTT
76208102 TT
1 TT
76208104 CAAAAAATCA
Statistics
Matches: 450, Mismatches: 36, Indels: 22
0.89 0.07 0.04
Matches are distributed among these distances:
162 13 0.03
163 3 0.01
164 26 0.06
165 217 0.48
166 39 0.09
167 82 0.18
168 5 0.01
169 65 0.14
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (163 bp):
TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTCAATTTTTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTC
AGGTCACACGCTGAGGTATTTTCAATTTCCGTT
Found at i:76207732 original size:74 final size:77
Alignment explanation
Indices: 76207606--76207768 Score: 224
Period size: 74 Copynumber: 2.1 Consensus size: 77
76207596 AATTTCCGTT
* *
76207606 TTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-A
1 TTTCAATTTCTGTCTGTC-AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCA
*
76207670 CACGCTGAGGTAA
65 CACGCCGAGGTAA
* *
76207683 TTTCAATTTCTGT-TGTC-AAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCA
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CA
* *
76207746 TACGCCGAGGTAT
65 CACGCCGAGGTAA
76207759 TTTCAATTTC
1 TTTCAATTTC
76207769 CGTTTTTCAA
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
74 40 0.52
76 24 0.31
77 13 0.17
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (77 bp):
TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
ACGCCGAGGTAA
Found at i:76207895 original size:74 final size:76
Alignment explanation
Indices: 76207789--76207933 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 76
76207779 TTTTTGCCTT
*
76207789 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG-CTGAGGTAATTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTT
76207851 CAATTTCTATTG
65 CAATTTCTATTG
* * *
76207863 TCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
76207928 AATTTC
66 AATTTC
76207934 CATTTTTCAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
76 21 0.33
77 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (76 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
AATTTCTATTG
Found at i:76208045 original size:71 final size:73
Alignment explanation
Indices: 76207961--76208466 Score: 406
Period size: 79 Copynumber: 6.5 Consensus size: 73
76207951 CTTTCAAAAA
*
76207961 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
76208026 -TGTTTTC
66 CTGTTTTC
* ** ** *
76208033 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
76208097 CTGTTTTC
66 CTGTTTTC
* * * ** *
76208105 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTATTTTCAAT
*
76208170 TTCTATCTTTC
64 TTCTGT-TTTC
* ** *
76208181 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA--TTTTC
* *
76208246 AATTTATATTTTTC
61 AATTTCT-GTTTTC
* * *
76208260 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTCA
**
76208324 AAATCTGTTTTTC
62 ATTTCTG-TTTTC
* * **
76208337 AAATTCTGTTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 --A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGA
*
76208402 GCTATTTTCAATTTCTGTTTTTTTTTC
52 GGTATTTTCAATTTCTG-----TTTTC
76208429 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
76208467 TTTTTAATTT
Statistics
Matches: 349, Mismatches: 51, Indels: 58
0.76 0.11 0.13
Matches are distributed among these distances:
71 57 0.16
72 7 0.02
73 34 0.10
75 21 0.06
76 4 0.01
77 57 0.16
78 5 0.01
79 64 0.18
80 1 0.00
81 5 0.01
82 29 0.08
86 2 0.01
88 54 0.15
89 1 0.00
91 2 0.01
92 6 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Done.