Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 254 of 770
Found at i:76208283 original size:79 final size:76
Alignment explanation
Indices: 76207937--76208676 Score: 428
Period size: 88 Copynumber: 9.2 Consensus size: 76
76207927 CAATTTCCAT
76207937 TTTTCAATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G
1 TTTTCAATTTCTGT-TTTC----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
**
76208001 -GGACACGCTGAGGTA
61 ATCACACGCTGAGGTA
* * ** *
76208016 ATTTCAATTT-TGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
*
76208076 ACGTTGAGGTA
66 ACGCTGAGGTA
* * ** * *
76208087 TTTTCAATTTCTGTTTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCAT
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
* *
76208151 GCGCTGAGCTA
66 ACGCTGAGGTA
* *
76208162 TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
76208227 CACACTGAGGTA
65 CACGCTGAGGTA
* * * * * *
76208239 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCT-GTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAT
* *
76208304 TACATG-TCGAGGTA
63 CACACGCT-GAGGTA
** *
76208318 TTTTCAAAATCTGTTTTTCAAATTCTGTTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTG-TTTTC-AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** * ** *
76208383 GCCTTGGCTCACGTGCTGAGCTA
54 GCCTCAGATCACACGCTGAGGTA
*
76208406 TTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTT
1 TTTTCAATTTCTG-----TTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CT
* * * * *
76208471 TA-ATTTCTGCGAGAGTTGAGTTGA
58 CAGA--TC-AC-A-CGCTGAGGT-A
* *
76208495 GTCTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-
1 -T-TTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGA
**
76208557 TCACA-TATCGAGGTA
62 TCACACGCT-GAGGTA
**
76208572 TTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTG-TTTTC------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** * * *
76208637 GCCTTGGCTCACGCGCTGAGCTA
54 GCCTCAGATCACACGCTGAGGTA
76208660 TTTTCAATTTCTGTTTT
1 TTTTCAATTTCTGTTTT
76208677 TAATGTCTGT
Statistics
Matches: 520, Mismatches: 83, Indels: 108
0.73 0.12 0.15
Matches are distributed among these distances:
71 57 0.11
72 7 0.01
73 32 0.06
75 36 0.07
76 5 0.01
77 67 0.13
78 10 0.02
79 73 0.14
80 2 0.00
81 7 0.01
82 30 0.06
83 1 0.00
84 31 0.06
85 7 0.01
86 1 0.00
87 11 0.02
88 120 0.23
89 3 0.01
90 1 0.00
91 13 0.03
92 6 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (76 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
ACGCTGAGGTA
Found at i:76208337 original size:14 final size:14
Alignment explanation
Indices: 76208318--76208356 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
76208308 TGTCGAGGTA
76208318 TTTTCAAAATCTGT
1 TTTTCAAAATCTGT
*
76208332 TTTTCAAATTCTGT
1 TTTTCAAAATCTGT
*
76208346 TTTTAAAAATC
1 TTTTCAAAATC
76208357 AACTCATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.05, T:0.51
Consensus pattern (14 bp):
TTTTCAAAATCTGT
Found at i:76208484 original size:30 final size:30
Alignment explanation
Indices: 76208448--76208509 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
76208438 CAACTCATAT
76208448 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
76208478 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
76208508 TG
1 TG
76208510 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:76208610 original size:254 final size:247
Alignment explanation
Indices: 76208101--76208677 Score: 754
Period size: 254 Copynumber: 2.3 Consensus size: 247
76208091 CAATTTCTGT
* * *
76208101 TTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTT
*
76208166 CAATTTC----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
66 CAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
* *
76208227 CACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGT
131 CACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGAGT
* ** * * * **
76208292 TGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTG
195 TGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAG
** * *
76208345 TTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTT
* *
76208410 CAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-A
66 CAATTTCTGTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA
* * * * * * *
76208474 TTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGA
128 --TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGA
*
76208537 GAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAG
186 GAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAG
76208599 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTT
76208664 CAATTTCTGTTTTT
66 CAATTTCTGTTTTT
76208678 AATGTCTGTT
Statistics
Matches: 287, Mismatches: 32, Indels: 18
0.85 0.09 0.05
Matches are distributed among these distances:
244 65 0.23
248 13 0.05
249 30 0.10
250 1 0.00
251 3 0.01
252 2 0.01
253 1 0.00
254 149 0.52
255 5 0.02
256 13 0.05
257 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (247 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTT
CAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
CACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTT
GAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAG
Found at i:76209340 original size:15 final size:15
Alignment explanation
Indices: 76209322--76209355 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
76209312 AACCTAACCC
*
76209322 AAAAAAAA-ACAAAG
1 AAAAAAAAGAAAAAG
76209336 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
76209351 AAAAA
1 AAAAA
76209356 CCTACCCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:76209368 original size:14 final size:16
Alignment explanation
Indices: 76209351--76209385 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
76209341 AAAGAAAAAG
76209351 AAAAACCT-A-CCCAA
1 AAAAACCTAACCCCAA
76209365 AAAAACCTAACCCCAA
1 AAAAACCTAACCCCAA
76209381 AAAAA
1 AAAAA
76209386 AAGAAGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.42
15 1 0.05
16 10 0.53
ACGTcount: A:0.63, C:0.31, G:0.00, T:0.06
Consensus pattern (16 bp):
AAAAACCTAACCCCAA
Found at i:76212276 original size:18 final size:18
Alignment explanation
Indices: 76212255--76212297 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
76212245 AACCCAAAAT
76212255 AAAAAATAAAAAAAAAAGA
1 AAAAAAT-AAAAAAAAAGA
* *
76212274 AAAAAATGAAGAAAAAGA
1 AAAAAATAAAAAAAAAGA
76212292 AAAAAA
1 AAAAAA
76212298 CCTAACCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.05
Consensus pattern (18 bp):
AAAAAATAAAAAAAAAGA
Found at i:76213192 original size:2 final size:2
Alignment explanation
Indices: 76213185--76213218 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
76213175 TATGTTTATG
76213185 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76213219 ATTTAGCTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:76213510 original size:19 final size:19
Alignment explanation
Indices: 76213486--76213523 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
76213476 TTGAGATTGC
*
76213486 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
76213505 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
76213524 TATTCATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:76214978 original size:31 final size:33
Alignment explanation
Indices: 76214920--76214996 Score: 106
Period size: 31 Copynumber: 2.4 Consensus size: 33
76214910 ATAATGCATG
76214920 ATAC-TTAATATATACATACAGAGATAATAATA
1 ATACATTAATATATACATACAGAGATAATAATA
*
76214952 ATACATTAATATATATATA-AGA-ATAATAATA
1 ATACATTAATATATACATACAGAGATAATAATA
* *
76214983 ATATATAAATATAT
1 ATACATTAATATAT
76214997 CAATTCTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
31 21 0.51
32 7 0.17
33 13 0.32
ACGTcount: A:0.56, C:0.05, G:0.04, T:0.35
Consensus pattern (33 bp):
ATACATTAATATATACATACAGAGATAATAATA
Found at i:76214994 original size:25 final size:28
Alignment explanation
Indices: 76214945--76214995 Score: 72
Period size: 25 Copynumber: 1.9 Consensus size: 28
76214935 ATACAGAGAT
*
76214945 AATAATAATACATTAATATATATATAAG
1 AATAATAATACATTAATATAAATATAAG
76214973 AATAATAATA-A-T-ATATAAATATA
1 AATAATAATACATTAATATAAATATA
76214996 TCAATTCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 10 0.45
26 1 0.05
27 1 0.05
28 10 0.45
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (28 bp):
AATAATAATACATTAATATAAATATAAG
Found at i:76215363 original size:29 final size:29
Alignment explanation
Indices: 76215331--76215438 Score: 107
Period size: 29 Copynumber: 3.7 Consensus size: 29
76215321 ATAGTTAAGG
76215331 ATAATAATATATATAAATAATAATATAAA
1 ATAATAATATATATAAATAATAATATAAA
76215360 ATAATAATATATAT-AA-AAT-ATATAAA
1 ATAATAATATATATAAATAATAATATAAA
*
76215386 ATAAATAACATATAATATAAGATAATAAAAT-AA
1 AT-AAT-A-ATAT-ATATAA-ATAATAATATAAA
* * *
76215419 ATAATTATAAAAATAAATAA
1 ATAATAATATATATAAATAA
76215439 AACATAGGGC
Statistics
Matches: 67, Mismatches: 4, Indels: 17
0.76 0.05 0.19
Matches are distributed among these distances:
26 9 0.13
27 6 0.09
28 7 0.10
29 23 0.34
30 7 0.10
31 1 0.01
32 4 0.06
33 7 0.10
34 3 0.04
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (29 bp):
ATAATAATATATATAAATAATAATATAAA
Found at i:76215405 original size:16 final size:16
Alignment explanation
Indices: 76215188--76215412 Score: 77
Period size: 16 Copynumber: 13.8 Consensus size: 16
76215178 ATAATTTCAA
76215188 AATATATAATAATATAT
1 AATATA-AATAATATAT
*
76215205 AAAATAAATAAT-T-T
1 AATATAAATAATATAT
76215219 ACATAGTAAATAA-A-AT
1 A-ATA-TAAATAATATAT
* *
76215235 CAT-TATATAATATAT
1 AATATAAATAATATAT
*
76215250 AATATAGAAGTATATAGGTTT
1 AATATA-AA-TA-ATA--TAT
*
76215271 AAAATTACAATAATATAT
1 AATA-TA-AATAATATAT
*
76215289 -ATAGTATATGAATA-ATT
1 AATA-TAAAT-AATATA-T
*
76215306 AAT-T-AATAAAATAT
1 AATATAAATAATATAT
76215320 AATAGTTAAGGATAATA-AT
1 AATA--TAA--ATAATATAT
76215339 ATATATAAATAATA-AT
1 A-ATATAAATAATATAT
76215355 -ATA-AAATAATA-AT
1 AATATAAATAATATAT
76215368 -ATATATAA-AATATAT
1 AATATA-AATAATATAT
* *
76215383 AAAATAAATAACATAT
1 AATATAAATAATATAT
76215399 AATATAAGATAATA
1 AATATAA-ATAATA
76215413 AAATAAATAA
Statistics
Matches: 158, Mismatches: 20, Indels: 60
0.66 0.08 0.25
Matches are distributed among these distances:
13 19 0.12
14 18 0.11
15 18 0.11
16 44 0.28
17 21 0.13
18 10 0.06
19 6 0.04
20 11 0.07
21 7 0.04
22 4 0.03
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (16 bp):
AATATAAATAATATAT
Found at i:76215444 original size:47 final size:47
Alignment explanation
Indices: 76215350--76215438 Score: 128
Period size: 47 Copynumber: 1.9 Consensus size: 47
76215340 TATATAAATA
* *
76215350 ATAATATAAAATAATAATATATATAAAATATATAAAATAAATAACAT
1 ATAATATAAAATAATAAAATAAATAAAATATATAAAATAAATAACAT
* *
76215397 ATAATATAAGATAATAAAATAAAT-AATTATA-AAAATAAATAA
1 ATAATATAAAATAATAAAATAAATAAAATATATAAAATAAATAA
76215439 AACATAGGGC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 11 0.29
46 6 0.16
47 21 0.55
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.30
Consensus pattern (47 bp):
ATAATATAAAATAATAAAATAAATAAAATATATAAAATAAATAACAT
Found at i:76216777 original size:9 final size:9
Alignment explanation
Indices: 76216763--76216788 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
76216753 GTGTAATAAT
76216763 TTGGGCCAG
1 TTGGGCCAG
76216772 TTGGGCCAG
1 TTGGGCCAG
76216781 TTGGGCCA
1 TTGGGCCA
76216789 CTTTAGTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.23, G:0.42, T:0.23
Consensus pattern (9 bp):
TTGGGCCAG
Found at i:76228223 original size:23 final size:21
Alignment explanation
Indices: 76228197--76228245 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
76228187 ACATACAGAG
76228197 ATAATAATAATATATTAATATAT
1 ATAATAATAATA-A-TAATATAT
*
76228220 ATAAGAATAATAATAATATAT
1 ATAATAATAATAATAATATAT
76228241 A-AATA
1 ATAATA
76228246 TATCAATTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 3 0.12
21 9 0.38
22 1 0.04
23 11 0.46
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
ATAATAATAATAATAATATAT
Found at i:76228235 original size:29 final size:32
Alignment explanation
Indices: 76228178--76228248 Score: 103
Period size: 29 Copynumber: 2.3 Consensus size: 32
76228168 TGCATGATAC
76228178 TTAATATATACATACAGAGATAATAATAATATA
1 TTAATATATA-ATACAGAGATAATAATAATATA
76228211 TTAATATAT-ATA-AGA-ATAATAATAATATA
1 TTAATATATAATACAGAGATAATAATAATATA
*
76228240 TAAATATAT
1 TTAATATAT
76228249 CAATTCTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
29 22 0.59
30 3 0.08
31 3 0.08
33 9 0.24
ACGTcount: A:0.56, C:0.03, G:0.04, T:0.37
Consensus pattern (32 bp):
TTAATATATAATACAGAGATAATAATAATATA
Found at i:76228367 original size:14 final size:14
Alignment explanation
Indices: 76228341--76228373 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
76228331 ATATAATAAC
76228341 ATAATCTTAAAAAA
1 ATAATCTTAAAAAA
76228355 ATAAT-TTAGAAAAA
1 ATAATCTTA-AAAAA
76228369 ATAAT
1 ATAAT
76228374 ACATAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 3 0.17
14 15 0.83
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (14 bp):
ATAATCTTAAAAAA
Found at i:76228464 original size:7 final size:7
Alignment explanation
Indices: 76228443--76228649 Score: 58
Period size: 7 Copynumber: 28.9 Consensus size: 7
76228433 ATAATTTCAA
76228443 AATATAT
1 AATATAT
76228450 AATA-AT
1 AATATAT
76228456 AATATAT
1 AATATAT
*
76228463 AAAATA-
1 AATATAT
*
76228469 AATAATTT
1 AAT-ATAT
76228477 ACATAGTA-
1 A-ATA-TAT
*
76228485 AATAAAAT
1 AAT-ATAT
*
76228493 CATTATAT
1 -AATATAT
76228501 AATATAT
1 AATATAT
*
76228508 AATATAG
1 AATATAT
76228515 AAGTATAT
1 AA-TATAT
* * *
76228523 AGGTTTAA
1 A-ATATAT
*
76228531 AAT-TAC
1 AATATAT
76228537 AATA-AT
1 AATATAT
76228543 -ATATAT
1 AATATAT
*
76228549 AGTATAT
1 AATATAT
76228556 GAATA-ATT
1 -AATATA-T
76228564 AAT-TAAT
1 AATAT-AT
*
76228571 AAAATAT
1 AATATAT
76228578 AATAGT-T
1 AATA-TAT
*
76228585 AAGGATAAT
1 AA-TAT-AT
76228594 AATATAT
1 AATATAT
76228601 -ATATAAT
1 AATAT-AT
*
76228608 AATATAA
1 AATATAT
76228615 AATA-AT
1 AATATAT
76228621 AATATAT
1 AATATAT
*
76228628 AAAATAAAT
1 --AATATAT
*
76228637 AACATAT
1 AATATAT
76228644 AATATA
1 AATATA
76228650 AGATAATAAA
Statistics
Matches: 145, Mismatches: 28, Indels: 54
0.64 0.12 0.24
Matches are distributed among these distances:
5 3 0.02
6 25 0.17
7 73 0.50
8 30 0.21
9 14 0.10
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (7 bp):
AATATAT
Found at i:76228604 original size:27 final size:27
Alignment explanation
Indices: 76228589--76228668 Score: 91
Period size: 24 Copynumber: 3.2 Consensus size: 27
76228579 ATAGTTAAGG
76228589 ATAATAATATATATATAATAATATAAA
1 ATAATAATATATATATAATAATATAAA
*
76228616 ATAATAATATATA-A-AATAA-ATAAC
1 ATAATAATATATATATAATAATATAAA
* *
76228640 AT-ATAATATA-AGATAATAAAAT-AA
1 ATAATAATATATATATAATAATATAAA
76228664 ATAAT
1 ATAAT
76228669 TATAAAAATA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
22 1 0.02
23 9 0.19
24 14 0.30
25 9 0.19
26 1 0.02
27 13 0.28
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (27 bp):
ATAATAATATATATATAATAATATAAA
Found at i:76228637 original size:29 final size:29
Alignment explanation
Indices: 76228589--76228675 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 29
76228579 ATAGTTAAGG
*
76228589 ATAATAATATAT-ATAT-AATAATATAAA
1 ATAATAATATATAAAATAAATAATATAAA
* *
76228616 ATAATAATATATAAAATAAATAACATATA
1 ATAATAATATATAAAATAAATAATATAAA
*
76228645 AT-ATAAGATAATAAAATAAATAATTATAAA
1 ATAATAATAT-ATAAAATAAATAA-TATAAA
76228675 A
1 A
76228676 ATAAATAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
27 12 0.24
28 9 0.18
29 24 0.48
30 5 0.10
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (29 bp):
ATAATAATATATAAAATAAATAATATAAA
Found at i:76237464 original size:22 final size:22
Alignment explanation
Indices: 76237439--76237483 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
76237429 TTGAAAAGTT
76237439 AGCTAGTAATTTCATATGAGGA
1 AGCTAGTAATTTCATATGAGGA
* *
76237461 AGCTAGTAATTTTATATGGGGA
1 AGCTAGTAATTTCATATGAGGA
76237483 A
1 A
76237484 TGACATTGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.33
Consensus pattern (22 bp):
AGCTAGTAATTTCATATGAGGA
Found at i:76247391 original size:78 final size:78
Alignment explanation
Indices: 76247255--76247549 Score: 378
Period size: 78 Copynumber: 3.8 Consensus size: 78
76247245 CGAAGAAACA
** * * * * * *
76247255 GATTTGGCATCTCCATATTCGACGGAGAGCATATCGAAGACATAGCAAATCTAACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAAACATAGCAGATCTAACCTTCATTGAA
76247320 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
76247333 GATTTGGCATCTTTGTATTAGACGGGGAGCAGATTGAAAACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAAACATAGCAGATCTAACCTTCATTGAA
76247398 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * *
76247411 GATTTGGCATATCTGTATTAGACGAGGAGCAGA-TCAAAGACATAACAGAT-TGGACCTTCATTG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAA-ACATAGCAGATCT-AACCTTCATTG
*
76247474 AAGCAGATCCAAAAT
64 AAGCAGATCCAAGAT
* * *
76247489 GATTTGGCATCTTTGTATTAGACGGGGAGCAGATTGAAGACATAGTAGATCTAACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAAACATAGCAGATCTAACCTTCAT
76247550 GTGTTTACAT
Statistics
Matches: 187, Mismatches: 26, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
77 5 0.03
78 178 0.95
79 4 0.02
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAAACATAGCAGATCTAACCTTCATTGAA
GCAGATCCAAGAT
Found at i:76247659 original size:31 final size:31
Alignment explanation
Indices: 76247624--76247690 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
76247614 TCGGAGATAA
*
76247624 CAGATTTGGCATCTTTGTATTAGATGGGGAG
1 CAGATTTGGCATCTCTGTATTAGATGGGGAG
*
76247655 CAGATTTGGCGTCTCTGTATTAGATGGGGAG
1 CAGATTTGGCATCTCTGTATTAGATGGGGAG
*
76247686 TAGAT
1 CAGAT
76247691 CGAAGATAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.22, C:0.10, G:0.33, T:0.34
Consensus pattern (31 bp):
CAGATTTGGCATCTCTGTATTAGATGGGGAG
Found at i:76247705 original size:76 final size:76
Alignment explanation
Indices: 76247579--76247732 Score: 220
Period size: 76 Copynumber: 2.0 Consensus size: 76
76247569 TCCAAGATGA
* *
76247579 CAGATTTGGCATCTCTGTATTAGCAGGGGAGCAAATCGGAGATAACAGATTTGGCATCTTTGTAT
1 CAGATTTGGCATCTCTGTATTAGCAGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
**
76247644 TAGATGGGGAG
66 TAGACAGGGAG
* * * *
76247655 CAGATTTGGCGTCTCTGTATTAG-ATGGGGAGTAGATCGAAGATAACAGATTTGGCGTCTCTGTA
1 CAGATTTGGCATCTCTGTATTAGCA-GGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTA
76247719 TTAGACAGGGAG
65 TTAGACAGGGAG
76247731 CA
1 CA
76247733 ATCAAAGATA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
75 1 0.01
76 68 0.99
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.29
Consensus pattern (76 bp):
CAGATTTGGCATCTCTGTATTAGCAGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
TAGACAGGGAG
Found at i:76248131 original size:18 final size:19
Alignment explanation
Indices: 76248099--76248161 Score: 87
Period size: 18 Copynumber: 3.5 Consensus size: 19
76248089 ATAATCTTCA
*
76248099 ATGATATGCAATCTTAGAT
1 ATGATATGAAATCTTAGAT
76248118 ATGAT-TGAAATCTTAGAT
1 ATGATATGAAATCTTAGAT
*
76248136 ATGATATGCAATCTTAGA-
1 ATGATATGAAATCTTAGAT
76248154 A-GATATGA
1 ATGATATGA
76248162 TTTTGTAATC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
17 6 0.15
18 18 0.45
19 16 0.40
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (19 bp):
ATGATATGAAATCTTAGAT
Found at i:76248150 original size:19 final size:19
Alignment explanation
Indices: 76248099--76248153 Score: 94
Period size: 18 Copynumber: 2.9 Consensus size: 19
76248089 ATAATCTTCA
76248099 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
76248118 ATGAT-TGAAATCTTAGAT
1 ATGATATGCAATCTTAGAT
76248136 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
76248154 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
18 17 0.52
19 16 0.48
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:76248179 original size:22 final size:22
Alignment explanation
Indices: 76248099--76248176 Score: 71
Period size: 18 Copynumber: 3.8 Consensus size: 22
76248089 ATAATCTTCA
76248099 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
76248118 ATGAT-TGAAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
76248136 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
76248158 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
76248177 GATTTAATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
18 17 0.34
19 13 0.26
22 8 0.16
23 12 0.24
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:76248467 original size:19 final size:17
Alignment explanation
Indices: 76248443--76248478 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
76248433 TGTTTCCCTG
76248443 ATTTTTTATATATATTTTA
1 ATTTTTTA-ATA-ATTTTA
76248462 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
76248479 GTATCATATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 3 0.18
19 8 0.47
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:76250302 original size:21 final size:20
Alignment explanation
Indices: 76250276--76250321 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
76250266 CTTCTTAAAA
*
76250276 TTTTTAAAATTTATATTTAAT
1 TTTTTAAAATATATATTT-AT
*
76250297 TTTTTATAATATATATTTAT
1 TTTTTAAAATATATATTTAT
76250317 TTTTT
1 TTTTT
76250322 CTCACCAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTAAAATATATATTTAT
Found at i:76251553 original size:20 final size:20
Alignment explanation
Indices: 76251528--76251565 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76251518 GTTTATTCAC
*
76251528 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
76251548 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
76251566 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:76264912 original size:42 final size:38
Alignment explanation
Indices: 76264813--76264912 Score: 96
Period size: 42 Copynumber: 2.5 Consensus size: 38
76264803 CATCGGTATA
*
76264813 AAGCCTGCTAGGCA-TAAGTTTGAATTTCACATCGGCAC
1 AAGCCTGCTAGGCACAAAGTTTGAATTTCACATC-GCAC
* *
76264851 AAGGCCTGCTAGACTCAAAGTTTGATATTTATTCACAT-GCAC
1 AA-GCCTGCTAGGCACAAAGTTTGA-A--T-TTCACATCGCAC
76264893 TAAGCCTGCTAGGCACAAAG
1 -AAGCCTGCTAGGCACAAAG
76264913 CCCGATCAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
38 2 0.04
39 10 0.20
40 8 0.16
41 1 0.02
42 19 0.38
43 3 0.06
44 7 0.14
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (38 bp):
AAGCCTGCTAGGCACAAAGTTTGAATTTCACATCGCAC
Found at i:76266514 original size:22 final size:22
Alignment explanation
Indices: 76266488--76266532 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
76266478 GCACATGATA
76266488 AAAGGAGATGCCTTTATGGCAT
1 AAAGGAGATGCCTTTATGGCAT
76266510 AAAGGAGATGCCTTTATGGCAT
1 AAAGGAGATGCCTTTATGGCAT
76266532 A
1 A
76266533 CTTTAAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (22 bp):
AAAGGAGATGCCTTTATGGCAT
Found at i:76269558 original size:37 final size:37
Alignment explanation
Indices: 76269495--76269599 Score: 174
Period size: 37 Copynumber: 2.8 Consensus size: 37
76269485 AGCTCAGACG
* * *
76269495 AAATCTCCACACGAAGTTATCAGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
76269532 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
*
76269569 TAATCTCCACACGTAGTCATCGGGTCTTACC
1 AAATCTCCACACGTAGTCATCGGGTCTTACC
76269600 CGAAATATAT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.26
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
Found at i:76269877 original size:48 final size:48
Alignment explanation
Indices: 76269750--76269934 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
76269740 GCACATCGCC
*
76269750 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
76269800 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
76269848 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
76269896 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
76269935 TGCATGTTCA
Statistics
Matches: 126, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
48 82 0.65
49 2 0.02
50 42 0.33
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:76269939 original size:98 final size:97
Alignment explanation
Indices: 76269750--76269933 Score: 309
Period size: 98 Copynumber: 1.9 Consensus size: 97
76269740 GCACATCGCC
* *
76269750 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCA-ATACATATTTCACATT
76269815 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
*
76269848 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCAATACATATTTCACATTG
76269911 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGCTTTACCACATAT
76269934 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 36 0.44
98 45 0.55
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:76269967 original size:47 final size:47
Alignment explanation
Indices: 76269904--76270097 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
76269894 CATACATATT
* * * *
76269904 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
76269951 CCACATTGGCCATTCGGCCTTATCACACATATTCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
76269998 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
** * **
76270045 TCACATTGGCCATTCGGCCTTATCTTATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
76270092 TCACAT
1 TCACAT
76270098 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:76270024 original size:22 final size:22
Alignment explanation
Indices: 76269997--76270068 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
76269987 GCTCACATTC
76269997 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
76270019 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
76270043 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
76270066 ATC
1 ATC
76270069 TTATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:76275346 original size:22 final size:22
Alignment explanation
Indices: 76275307--76275349 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
76275297 ATCACTCTTC
* *
76275307 CTCTCCTTTTATTTTTCTTTTT
1 CTCTCCATTTATTATTCTTTTT
*
76275329 CTCTCCATTTGTTATTCTTTT
1 CTCTCCATTTATTATTCTTTT
76275350 CTTCTTCTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.23, G:0.02, T:0.67
Consensus pattern (22 bp):
CTCTCCATTTATTATTCTTTTT
Found at i:76276632 original size:27 final size:27
Alignment explanation
Indices: 76276594--76276703 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
76276584 AAGCATCCTA
*
76276594 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
*
76276621 GTGGCTCTGCCACATATT-TCTGTTCTG
1 GTGGCTCTGCCACA-ATTATCTGATCTG
* *
76276648 GTGGCTCTGCCACGATTATTTGTATCTG
1 GTGGCTCTGCCACAATTATCTG-ATCTG
* * *
76276676 GTGACTCTGTCAC-ATTATCTGTTCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
76276702 GT
1 GT
76276704 AGCCATGCTG
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 9 0.13
27 44 0.62
28 18 0.25
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (27 bp):
GTGGCTCTGCCACAATTATCTGATCTG
Found at i:76276697 original size:54 final size:54
Alignment explanation
Indices: 76276594--76276703 Score: 150
Period size: 54 Copynumber: 2.0 Consensus size: 54
76276584 AAGCATCCTA
* *
76276594 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTG
* * * *
76276648 GTGGCTCTGCCACGATTATTTGTATCTGGTGACTCTGTCACAT-TATCTGTTCTG
1 GTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTCTG
76276702 GT
1 GT
76276704 AGCCATGCTG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
54 31 0.63
55 18 0.37
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTG
Found at i:76285432 original size:2 final size:2
Alignment explanation
Indices: 76285425--76285470 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
76285415 ACCAGAACTT
76285425 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76285467 TA TA
1 TA TA
76285471 GAAACTTAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:76285837 original size:15 final size:16
Alignment explanation
Indices: 76285819--76285851 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
76285809 TATATTTTTT
76285819 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
76285834 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
76285851 T
1 T
76285852 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:76285924 original size:21 final size:23
Alignment explanation
Indices: 76285898--76285943 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
76285888 GTTTTAAGAA
*
76285898 TTGTTTTAGTA-TTATTTT-TAT
1 TTGTTTTAATATTTATTTTATAT
76285919 TTGTTTTAATATTTATTTTATAT
1 TTGTTTTAATATTTATTTTATAT
76285942 TT
1 TT
76285944 TTAAGTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.45
22 7 0.32
23 5 0.23
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.72
Consensus pattern (23 bp):
TTGTTTTAATATTTATTTTATAT
Found at i:76286728 original size:2 final size:2
Alignment explanation
Indices: 76286721--76286746 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
76286711 GTCTGATTTC
76286721 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
76286747 CAAAATTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:76288709 original size:13 final size:13
Alignment explanation
Indices: 76288691--76288716 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76288681 ATTTTTGGTG
76288691 CCTTTGAGAATTT
1 CCTTTGAGAATTT
76288704 CCTTTGAGAATTT
1 CCTTTGAGAATTT
76288717 TCACTTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (13 bp):
CCTTTGAGAATTT
Found at i:76293474 original size:20 final size:20
Alignment explanation
Indices: 76293451--76293502 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
76293441 AATCAAGTGC
76293451 AAATGATTTTAA-CCAAGTCA
1 AAATGATTTTAATCCAA-TCA
* *
76293471 AAATGATTTAAATCCAATTA
1 AAATGATTTTAATCCAATCA
*
76293491 AAATCATTTTAA
1 AAATGATTTTAA
76293503 ATGATTTCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 23 0.85
21 4 0.15
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.35
Consensus pattern (20 bp):
AAATGATTTTAATCCAATCA
Found at i:76293507 original size:30 final size:30
Alignment explanation
Indices: 76293470--76293539 Score: 106
Period size: 30 Copynumber: 2.3 Consensus size: 30
76293460 TAACCAAGTC
76293470 AAAATGATTTAAATCCAA-TTAAAATCATTT
1 AAAATGATTTAAAT-CAAGTTAAAATCATTT
* *
76293500 TAAATGATTTCAATCAAGTTAAAATCATTT
1 AAAATGATTTAAATCAAGTTAAAATCATTT
76293530 AAAATGATTT
1 AAAATGATTT
76293540 TCAAACAAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 3 0.08
30 33 0.92
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.39
Consensus pattern (30 bp):
AAAATGATTTAAATCAAGTTAAAATCATTT
Found at i:76293549 original size:31 final size:30
Alignment explanation
Indices: 76293470--76293555 Score: 104
Period size: 30 Copynumber: 2.8 Consensus size: 30
76293460 TAACCAAGTC
76293470 AAAATGATTT-AAATCCAA-TTAAAATCATTT
1 AAAATGATTTCAAA--CAAGTTAAAATCATTT
* *
76293500 TAAATGATTTCAATCAAGTTAAAATCATTT
1 AAAATGATTTCAAACAAGTTAAAATCATTT
*
76293530 AAAATGATTTTCAAACAAGTCAAAAT
1 AAAATGA-TTTCAAACAAGTTAAAAT
76293556 TGCTCCAGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
29 3 0.06
30 27 0.56
31 18 0.38
ACGTcount: A:0.49, C:0.10, G:0.06, T:0.35
Consensus pattern (30 bp):
AAAATGATTTCAAACAAGTTAAAATCATTT
Found at i:76296740 original size:19 final size:19
Alignment explanation
Indices: 76296713--76296872 Score: 219
Period size: 19 Copynumber: 8.8 Consensus size: 19
76296703 AATCATATCT
*
76296713 TCTAAGATTCCATATCATA
1 TCTAAGATTGCATATCATA
* *
76296732 TCGAAGATTG--TATCACA
1 TCTAAGATTGCATATCATA
*
76296749 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
76296768 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
76296786 TCTAAGATTG----T-ATA
1 TCTAAGATTGCATATCATA
76296800 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
76296819 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
76296838 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
76296857 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
76296873 CTTAAAGATT
Statistics
Matches: 126, Mismatches: 8, Indels: 14
0.85 0.05 0.09
Matches are distributed among these distances:
14 13 0.10
15 1 0.01
17 15 0.12
18 17 0.13
19 80 0.63
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:76296834 original size:14 final size:14
Alignment explanation
Indices: 76296782--76296815 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
76296772 AGATTGCAAT
76296782 CATATCTAAGATTG
1 CATATCTAAGATTG
*
76296796 TATATCTAAGATTG
1 CATATCTAAGATTG
76296810 CATATC
1 CATATC
76296816 ATATCTAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (14 bp):
CATATCTAAGATTG
Found at i:76297359 original size:44 final size:44
Alignment explanation
Indices: 76297306--76297495 Score: 138
Period size: 44 Copynumber: 4.3 Consensus size: 44
76297296 CCTGTCTAAT
* * *
76297306 ACAGAGATGCCAAATCTACTATCTTCAACTTATTCCTTATAAAC
1 ACAGGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAAC
* * * *
76297350 ACAGGGATGCC--ATGCTGA-AATCTTCAA-TCTGCTTCGCTGTAAGC
1 ACAGGGATGCCAAAT-CT-ACTATCTTCAACT-TG-TTCCCTATAAAC
* * * * * * *
76297394 ATAGGAATGTCAGATCTGCTATGTCTTCCA-TCTGTTCCCTGTAAAC
1 ACAGGGATGCCAAATCTACTA--TCTTCAACT-TGTTCCCTATAAAC
* *
76297440 ACAGGGATGCCAAATCTGCTATATTCAACTTGTTCCCTATAAAC
1 ACAGGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAAC
76297484 ACAGGGATGCCA
1 ACAGGGATGCCA
76297496 TGTTAAAATC
Statistics
Matches: 114, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
42 3 0.03
43 11 0.10
44 57 0.50
45 4 0.04
46 29 0.25
47 10 0.09
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (44 bp):
ACAGGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAAC
Found at i:76297457 original size:46 final size:46
Alignment explanation
Indices: 76297370--76297589 Score: 157
Period size: 46 Copynumber: 4.8 Consensus size: 46
76297360 CATGCTGAAA
* * * * * *
76297370 TCTTCAATCTGCTTCGCTGTAAGCATAGGAATGTCAGATCTGCTATG
1 TCTTCCATCTG-TTCCCTGTAAACACAGGAATGCCAAATCTGCTATG
*
76297417 TCTTCCATCTGTTCCCTGTAAACACAGGGATGCCAAATCTGCTA--
1 TCTTCCATCTGTTCCCTGTAAACACAGGAATGCCAAATCTGCTATG
* * * * * **
76297461 TATT-CAACTTGTTCCCTATAAACACAGGGATGCC--A--TGTTAAAA
1 TCTTCCATC-TGTTCCCTGTAAACACAGGAATGCCAAATCTGCT-ATG
** * * ** *
76297504 TCTTTGATCTGCTTCGCTGTAAACATAGGAATGTTAGATCTGCTATG
1 TCTTCCATCTG-TTCCCTGTAAACACAGGAATGCCAAATCTGCTATG
*
76297551 TCTTCGATCTGTTCCCTGTAAACACAGGAATGCCAAATC
1 TCTTCCATCTGTTCCCTGTAAACACAGGAATGCCAAATC
76297590 ATCTTGGATC
Statistics
Matches: 134, Mismatches: 29, Indels: 21
0.73 0.16 0.11
Matches are distributed among these distances:
40 3 0.02
41 1 0.01
42 1 0.01
43 8 0.06
44 46 0.34
46 51 0.38
47 21 0.16
48 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (46 bp):
TCTTCCATCTGTTCCCTGTAAACACAGGAATGCCAAATCTGCTATG
Found at i:76297483 original size:134 final size:134
Alignment explanation
Indices: 76297282--76297589 Score: 454
Period size: 134 Copynumber: 2.3 Consensus size: 134
76297272 CAAATTTGCT
* * * * * *
76297282 TCTTCAATCTGCTCCCTGTCTAATACAGAGATGCCAAATCTACTATCTTCAACTTATTCCTTATA
1 TCTTCAATCTGTTCCCTGT-AAACACAGGGATGCCAAATCTACTATATTCAACTTATTCCCTATA
* *
76297347 AACACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCGCTGTAAGCATAGGAATGTCAGATCTG
65 AACACAGGGATGCCATGCTAAAATCTTCAATCTGCTTCGCTGTAAACATAGGAATGTCAGATCTG
76297412 CTATG
130 CTATG
* * *
76297417 TCTTCCATCTGTTCCCTGTAAACACAGGGATGCCAAATCTGCTATATTCAACTTGTTCCCTATAA
1 TCTTCAATCTGTTCCCTGTAAACACAGGGATGCCAAATCTACTATATTCAACTTATTCCCTATAA
* ** *
76297482 ACACAGGGATGCCATGTTAAAATCTTTGATCTGCTTCGCTGTAAACATAGGAATGTTAGATCTGC
66 ACACAGGGATGCCATGCTAAAATCTTCAATCTGCTTCGCTGTAAACATAGGAATGTCAGATCTGC
76297547 TATG
131 TATG
* *
76297551 TCTTCGATCTGTTCCCTGTAAACACAGGAATGCCAAATC
1 TCTTCAATCTGTTCCCTGTAAACACAGGGATGCCAAATC
76297590 ATCTTGGATC
Statistics
Matches: 156, Mismatches: 17, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
134 139 0.89
135 17 0.11
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (134 bp):
TCTTCAATCTGTTCCCTGTAAACACAGGGATGCCAAATCTACTATATTCAACTTATTCCCTATAA
ACACAGGGATGCCATGCTAAAATCTTCAATCTGCTTCGCTGTAAACATAGGAATGTCAGATCTGC
TATG
Found at i:76297671 original size:44 final size:44
Alignment explanation
Indices: 76297612--76298377 Score: 441
Period size: 44 Copynumber: 17.4 Consensus size: 44
76297602 TTCCCGGTCA
* *
76297612 AATACGGAGATGCCAAATCTTCTGTCTTCGATCTGCTCTCTGCC
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGCC
*
76297656 AATACAGAGACGCCAAATCTAT-TATCTTCGATCTGCTCTCTGCC
1 AATACAGAGATGCCAAATCT-TCTATCTTCGATCTGCTCTCTGCC
**
76297700 AATACAGAGATTTCAAATCTGT-TATCTTCGATCTGCTCTCTGCC
1 AATACAGAGATGCCAAATCT-TCTATCTTCGATCTGCTCTCTGCC
* ** *
76297744 AATACAGAGATGCCAAA---TC-ATCTTAGA-CTTGCT-TCAACGT
1 AATACAGAGATGCCAAATCTTCTATCTTCGATC-TGCTCTCTGC-C
* * * **
76297784 AA-AAACGTGGAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCTGCC
1 AATACA-G-AGATGCCAAATCTTCTA--TCTTCGATCTGCTCTCTGCC
* *
76297831 GAATACAGAGATGTCAAATCTGTC-ATCTTTGATCTGCTCTCTGCC
1 -AATACAGAGATGCCAAATCT-TCTATCTTCGATCTGCTCTCTGCC
*
76297876 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGCC
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGCC
* ** *
76297920 AATACAGAGATGCCAAA---TC-ATCTTAGA-CTTGCT-TCAACGT
1 AATACAGAGATGCCAAATCTTCTATCTTCGATC-TGCTCTCTGC-C
* * ** *
76297960 AA-ACACGTGGAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCAT-CG
1 AATACA-G-AGATGCCAAATCTTCTA--TCTTCGATCTGCTCT-C-TGCC
* * *
76298008 AATACAGAGATGCCAAATATATC-ATCTTTGATCTGCTCTCTACC
1 AATACAGAGATGCCAAATCT-TCTATCTTCGATCTGCTCTCTGCC
*
76298052 AATACAGAGATGCCAAATCTGT-TATCTTCGATCTGCTCTCTTCC
1 AATACAGAGATGCCAAATCT-TCTATCTTCGATCTGCTCTCTGCC
* * ** *
76298096 AATACAGAGATGCCAAA---TC-ATCTTAGATTTGCT-TCAACGT
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGC-C
* * ** * *
76298136 AA-ACACATGAAAGCCAAATCAGCTATGTCTTCGATCTACTCTCCGCC
1 AATACAGA-G-ATGCCAAATCTTCTA--TCTTCGATCTGCTCTCTGCC
* *
76298183 GAATACAGAGATGCCAAATCAGTC-ATCTTCGATCTACTCTCTGCC
1 -AATACAGAGATGCCAAATC-TTCTATCTTCGATCTGCTCTCTGCC
* * * * ** *
76298228 AATACAGAGACGCTAAA---TC-ATCTTAGATTTGCT-TCAACGT
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGC-C
* * ** * *
76298268 AA-ACACGTGAAAGCCAAATCAGCTATGTCTTTGATCTGCTCCCTGCC
1 AATACA-GAG-ATGCCAAATCTTCTA--TCTTCGATCTGCTCTCTGCC
* ** *
76298315 AATACAGAGACGCCAAATCTAGTATCTTCGATCTGCTC-CATGAC
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTC-TGCC
76298359 AATACAGAGACT-CCAAATC
1 AATACAGAGA-TGCCAAATC
76298378 ATCTTGGATC
Statistics
Matches: 561, Mismatches: 98, Indels: 126
0.71 0.12 0.16
Matches are distributed among these distances:
39 26 0.05
40 62 0.11
41 30 0.05
43 3 0.01
44 260 0.46
45 57 0.10
46 11 0.02
47 75 0.13
48 26 0.05
49 11 0.02
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (44 bp):
AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGCC
Found at i:76297754 original size:132 final size:129
Alignment explanation
Indices: 76297612--76298391 Score: 496
Period size: 132 Copynumber: 5.9 Consensus size: 129
76297602 TTCCCGGTCA
* * *
76297612 AATACGGAGATGCCAAATCTTCTGTCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTA
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC-A
** * *
76297677 TTATCTTCGATCTGCTCTCTGCCAATACAGAGATTTCAAATCTGTTATCTTCGATCTGCTCTCTG
65 TTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC-G-TATCTTAGATCTGCTCTCTA
76297742 CC
128 CC
* ** * * * *
76297744 AATACAGAGATGCCAAA---TC-ATCTTAGA-CTTGCT-TCAACGTAA-AAACGTGGAAGCCAAA
1 AATACAGAGATGCCAAATCTTCTATCTTCGATC-TGCTCTCTGC-CAATACA-G-AGATGCCAAA
* * *
76297802 TCAGCTATGTCTTCGATCTGCTCTCTGCCGAATACAGAGATGTCAAATCTGTCATCTTTGATCTG
62 TCA--T-TATCTTCGATCTGCTCTCTGCC-AATACAGAGATGCCAAATC-GT-ATCTTAGATCTG
*
76297867 CTCTCTGCC
121 CTCTCTACC
*
76297876 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC--
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAT
* ** * * * *
76297939 -ATCTTAGA-CTTGCT-TCAACGTAA-ACACGTGGAAGCCAAATCAGCTATGTCTTCGATCTGCT
66 TATCTTCGATC-TGCTCTCTGC-CAATACA-G-AGATGCCAAATC-G-TA--TCTTAGATCTGCT
* *
76298000 CTCCATCG
123 CTCTA-CC
* * *
76298008 AATACAGAGATGCCAAATATATC-ATCTTTGATCTGCTCTCTACCAATACAGAGATGCCAAATCT
1 AATACAGAGATGCCAAATCT-TCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC-
* * * *
76298072 GTTATCTTCGATCTGCTCTCTTCCAATACAGAGATGCCAAATC--ATCTTAGATTTGCT-TCAAC
64 ATTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCGTATCTTAGATCTGCTCTCTAC
*
76298134 GT
129 -C
* * ** * *
76298136 AA-ACACATGAAAGCCAAATCAGCTATGTCTTCGATCTACTCTCCGCCGAATACAGAGATGCCAA
1 AATACAGA-G-ATGCCAAATCTTCTA--TCTTCGATCTGCTCTCTGCC-AATACAGAGATGCCAA
* * * * *
76298200 ATCAGTCATCTTCGATCTACTCTCTGCCAATACAGAGACGCTAAATC--ATCTTAGATTTGCT-T
61 ATCA-TTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCGTATCTTAGATCTGCTCT
* *
76298262 CAACGT
125 CTAC-C
* * ** * * *
76298268 AA-ACACGTGAAAGCCAAATCAGCTATGTCTTTGATCTGCTCCCTGCCAATACAGAGACGCCAAA
1 AATACA-GAG-ATGCCAAATCTTCTA--TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
* * *
76298332 TCTAGTATCTTCGATCTGCTC-CATGACAATACAGAGACT-CCAAATC--ATCTTGGATCTGCT
62 TC-ATTATCTTCGATCTGCTCTC-TGCCAATACAGAGA-TGCCAAATCGTATCTTAGATCTGCT
76298392 TCAGTGTAAA
Statistics
Matches: 527, Mismatches: 77, Indels: 89
0.76 0.11 0.13
Matches are distributed among these distances:
127 14 0.03
128 28 0.05
129 53 0.10
130 3 0.01
131 117 0.22
132 249 0.47
133 1 0.00
135 21 0.04
136 28 0.05
137 13 0.02
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (129 bp):
AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAT
TATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCGTATCTTAGATCTGCTCTCTACC
Found at i:76297877 original size:176 final size:176
Alignment explanation
Indices: 76297634--76298246 Score: 987
Period size: 176 Copynumber: 3.5 Consensus size: 176
76297624 CCAAATCTTC
* * *
76297634 TGTCTTCGATCTGCTCTCTGCC-AATACAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCTG
1 TGTCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTATCATCTTCGATCTGCTCTCTG
**
76297698 CCAATACAGAGATTTCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC
66 CCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC
*
76297763 ATCTTAGACTTGCTTCAACGTAAAAACGTGGAAGCCAAATCAGCTA
131 ATCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTA
* * * *
76297809 TGTCTTCGATCTGCTCTCTGCCGAATACAGAGATGTCAAATCTGTCATCTTTGATCTGCTCTCTG
1 TGTCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTATCATCTTCGATCTGCTCTCTG
*
76297874 CCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC
66 CCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC
76297939 ATCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTA
131 ATCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTA
** * * *
76297985 TGTCTTCGATCTGCTCTCCATCGAATACAGAGATGCCAAATATATCATCTTTGATCTGCTCTCTA
1 TGTCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTATCATCTTCGATCTGCTCTCTG
*
76298050 CCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTTCCAATACAGAGATGCCAAATC
66 CCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC
* * *
76298115 ATCTTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTA
131 ATCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTA
* *
76298161 TGTCTTCGATCTACTCTCCGCCGAATACAGAGATGCCAAATC-AGTCATCTTCGATCTACTCTCT
1 TGTCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTA-TCATCTTCGATCTGCTCTCT
* *
76298225 GCCAATACAGAGACGCTAAATC
65 GCCAATACAGAGATGCCAAATC
76298247 ATCTTAGATT
Statistics
Matches: 406, Mismatches: 30, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
175 23 0.06
176 383 0.94
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (176 bp):
TGTCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTATCATCTTCGATCTGCTCTCTG
CCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC
ATCTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTA
Found at i:76298345 original size:352 final size:347
Alignment explanation
Indices: 76297612--76298376 Score: 904
Period size: 352 Copynumber: 2.2 Consensus size: 347
76297602 TTCCCGGTCA
* * ** * *
76297612 AATACGGAGATGCCAAATCTTCTGTCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTA
1 AATACAGAGAAGCCAAATCTAGTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATATA
* * **
76297677 TTATCTTCGATCTGCTCTCTGCCAATACAGAGATTTCAAATCTGTTATCTTCGATCTGCTCTCTG
66 TCATCTTCGATCTGCTCTCTACCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTG
* *
76297742 CCAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAAAACGTGGAAGCCAAATCAGC
131 CCAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAAAACATGAAAGCCAAATCAGC
* * * * * *
76297807 TATGTCTTCGATCTGCTCTCTGCCGAATACAGAGATGTCAAATCTGTCATCTTTGATCTGCTCTC
196 TATGTCTTCGATCTACTCTCCGCCGAATACAGAGATGCCAAATCAGTCATCTTCGATCTACTCTC
* * ** *
76297872 TGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA
261 TGCCAATACAGAGACGCCAAA-CTGCTATCTTAGATCTGCTCTCAACCAATACAGAGAAGCCAAA
* *
76297937 TCATCTTAGACTTGCTTCAACGT
325 TCAGCTTAGACTTGCTTCAACGC
* * *
76297960 AA-ACACGTGGAAGCCAAATC-AGCTATGTCTTCGATCTGCTCTCCAT-CGAATACAGAGATGCC
1 AATACA-G-AGAAGCCAAATCTAG-TA--TCTTCGATCTGCTCT-C-TGCCAATACAGAGACGCC
*
76298022 AAATATATCATCTTTGATCTGCTCTCTACCAATACAGAGATGCCAAATCTGTTATCTTCGATCTG
59 AAATATATCATCTTCGATCTGCTCTCTACCAATACAGAGATGCCAAATCTGTTATCTTCGATCTG
* * *
76298087 CTCTCTTCCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACATGAAAGCCA
124 CTCTCTGCCAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAAAACATGAAAGCCA
76298152 AATCAGCTATGTCTTCGATCTACTCTCCGCCGAATACAGAGATGCCAAATCAGTCATCTTCGATC
189 AATCAGCTATGTCTTCGATCTACTCTCCGCCGAATACAGAGATGCCAAATCAGTCATCTTCGATC
* * * *
76298217 TACTCTCTGCCAATACAGAGACGCTAAA-T-C-ATCTTAGATTTGCT-TCAACGTAA-ACACGTG
254 TACTCTCTGCCAATACAGAGACGCCAAACTGCTATCTTAGATCTGCTCTCAAC-CAATACA-GAG
* *
76298277 AAAGCCAAATCAGC-TATGTCTTTGATCTGCTC-CCTGCC
317 -AAGCCAAATCAGCTTA-GAC-TTG--CT--TCAAC-G-C
* * *
76298315 AATACAGAGACGCCAAATCTAGTATCTTCGATCTGCTC-CATGACAATACAGAGACTCCAAAT
1 AATACAGAGAAGCCAAATCTAGTATCTTCGATCTGCTCTC-TGCCAATACAGAGACGCCAAAT
76298377 CATCTTGGAT
Statistics
Matches: 352, Mismatches: 44, Indels: 39
0.81 0.10 0.09
Matches are distributed among these distances:
347 8 0.02
348 21 0.06
349 25 0.07
350 7 0.02
351 31 0.09
352 235 0.67
353 2 0.01
354 15 0.04
355 5 0.01
356 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (347 bp):
AATACAGAGAAGCCAAATCTAGTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATATA
TCATCTTCGATCTGCTCTCTACCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTG
CCAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAAAACATGAAAGCCAAATCAGC
TATGTCTTCGATCTACTCTCCGCCGAATACAGAGATGCCAAATCAGTCATCTTCGATCTACTCTC
TGCCAATACAGAGACGCCAAACTGCTATCTTAGATCTGCTCTCAACCAATACAGAGAAGCCAAAT
CAGCTTAGACTTGCTTCAACGC
Found at i:76299361 original size:22 final size:21
Alignment explanation
Indices: 76299336--76299379 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
76299326 TTGGCCTCTC
*
76299336 TATTTTTTTTCTTTTTTATTTT
1 TATTTTTTCTCTTTTTT-TTTT
76299358 TATTTTTTCTCTTTTTTTTTT
1 TATTTTTTCTCTTTTTTTTTT
76299379 T
1 T
76299380 GAAATAGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.86
Consensus pattern (21 bp):
TATTTTTTCTCTTTTTTTTTT
Found at i:76299365 original size:20 final size:20
Alignment explanation
Indices: 76299340--76299378 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
76299330 CCTCTCTATT
76299340 TTTTTTCT-TTTTTATTTTTA
1 TTTTTTCTCTTTTT-TTTTTA
76299360 TTTTTTCTCTTTTTTTTTT
1 TTTTTTCTCTTTTTTTTTT
76299379 TGAAATAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.05, C:0.08, G:0.00, T:0.87
Consensus pattern (20 bp):
TTTTTTCTCTTTTTTTTTTA
Found at i:76305078 original size:22 final size:21
Alignment explanation
Indices: 76305043--76305117 Score: 57
Period size: 22 Copynumber: 3.6 Consensus size: 21
76305033 AAAGGATATC
* *
76305043 TACAAATTAAATCTCCAAGAT
1 TACAAATCATATCTCCAAGAT
*
76305064 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCCAAGAT
* *
76305087 TGCATATCATATCT--AAGAT
1 TACAAATCATATCTCCAAGAT
*
76305106 TGC-AATCATATC
1 TACAAATCATATC
76305118 GAAGATTGTA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
18 8 0.17
19 8 0.17
21 4 0.09
22 17 0.37
23 9 0.20
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.33
Consensus pattern (21 bp):
TACAAATCATATCTCCAAGAT
Found at i:76305103 original size:19 final size:19
Alignment explanation
Indices: 76305079--76305259 Score: 284
Period size: 19 Copynumber: 9.8 Consensus size: 19
76305069 AATCATATCT
76305079 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
76305098 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
* *
76305116 TCGAAGATTG--TATCACA
1 TCTAAGATTGCATATCATA
76305133 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
76305152 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
76305170 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
76305187 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
*
76305206 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
76305225 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
76305244 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
76305260 CTTAAAGATT
Statistics
Matches: 148, Mismatches: 8, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
17 29 0.20
18 31 0.21
19 88 0.59
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:76305139 original size:54 final size:54
Alignment explanation
Indices: 76305079--76305259 Score: 299
Period size: 54 Copynumber: 3.3 Consensus size: 54
76305069 AATCATATCT
* *
76305079 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTGTATCACA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
76305133 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
* *
76305187 TCTAAGATTACATATCATATCTAAGATTGCATATCACATCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATATCTAAGATTG--TATCATA
76305244 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
76305260 CTTAAAGATT
Statistics
Matches: 119, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
54 82 0.69
55 15 0.13
57 22 0.18
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:76305160 original size:73 final size:74
Alignment explanation
Indices: 76305072--76305255 Score: 279
Period size: 73 Copynumber: 2.5 Consensus size: 74
76305062 ATTACAAAAT
*
76305072 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCGAAGATT-GTATCACAT
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTAATATCACAT
76305134 CTAAGATTG
66 CTAAGATTG
* * *
76305143 CATATCATATCTAAGATTGCA-ATCATATCTAAGATTG-TATCATATCTAAGATTACATATCATA
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTA-ATATCACA
76305206 TCTAAGATTG
65 TCTAAGATTG
*
76305216 CATATCACATCTAAGATTGCATATCATATCTAAGATTGCA
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTGCA
76305256 TATCCTTAAA
Statistics
Matches: 101, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
71 20 0.20
72 17 0.17
73 48 0.48
74 16 0.16
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (74 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTAATATCACAT
CTAAGATTG
Found at i:76310444 original size:40 final size:40
Alignment explanation
Indices: 76310378--76310544 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76310368 AAATTGAATG
* * *
76310378 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76310417 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76310457 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76310497 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76310537 ATATCCGG
1 ATATCCGG
76310545 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76318436 original size:40 final size:40
Alignment explanation
Indices: 76318370--76318536 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76318360 AAATTGAATG
* * *
76318370 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76318409 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76318449 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76318489 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76318529 ATATCCGG
1 ATATCCGG
76318537 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76321308 original size:27 final size:27
Alignment explanation
Indices: 76321278--76321354 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
76321268 TAGAATTATG
76321278 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
76321305 GAAATAACCC-TGTAGGGTAGAATTACT
1 GAAAT-ACCCTTGTAGGGTAGAAATACC
* *
76321332 GAGATACCCTTGTGGGGTA-AAAT
1 GAAATACCCTTGTAGGGTAGAAAT
76321355 TACCATTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
26 7 0.16
27 32 0.74
28 4 0.09
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAAATACC
Found at i:76333737 original size:2 final size:2
Alignment explanation
Indices: 76333730--76333757 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
76333720 GCTCTTGCAC
76333730 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76333758 GATGTATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76334604 original size:40 final size:40
Alignment explanation
Indices: 76334455--76334640 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
76334445 TCGAATGATG
* * *
76334455 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
76334495 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76334535 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
76334575 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACCATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
76334616 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76334641 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76334647 original size:80 final size:80
Alignment explanation
Indices: 76334455--76334673 Score: 229
Period size: 80 Copynumber: 2.8 Consensus size: 80
76334445 TCGAATGATG
* * **
76334455 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
*
76334519 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACCAAA
* *
76334535 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
76334597 TCTGTGCGAGTTACCATAA
64 TC-GTGCGAGTTACCA-AA
* **
76334616 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
76334674 TACGTGATTC
Statistics
Matches: 118, Mismatches: 12, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
79 19 0.16
80 89 0.75
81 10 0.08
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACCAAA
Found at i:76337162 original size:40 final size:40
Alignment explanation
Indices: 76337102--76337284 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
76337092 TTATTCAATG
* *
76337102 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGTTAAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCT-AGTGACT
* * *
76337143 ATAT-CGGACTAAGATCCGAAGGCATTTATGCTAGTTACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * * *
76337182 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
*
76337222 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGA-T
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
76337261 CATATCCGGGCTAAG-CCCGAAGGC
1 -ATATCCGGGCTAAGATCCGAAGGC
76337285 CTTGTGCGAG
Statistics
Matches: 120, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 19 0.16
40 96 0.80
41 5 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:76337235 original size:80 final size:80
Alignment explanation
Indices: 76337102--76337284 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 80
76337092 TTATTCAATG
* ** * * *
76337102 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACTATATCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAAGCGACTATATCGGACTAAG-TCCCGAAGGC
*
76337166 ATTTATGCTAGTTA-C
65 ATTTATGCTAGTGATC
*
76337181 TATATCCGGGCCAAAACCCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGG
1 -ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAAGCGACTATAT-CGGACTAAGTCCCGAAGG
76337245 CATTTATGCTAGTGATC
64 CATTTATGCTAGTGATC
* *
76337262 ATATCCGGG-CTAAGCCCGAAGGC
1 ATATCCGGGCCAAAACCCGAAGGC
76337285 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
79 23 0.26
80 66 0.73
81 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAAGCGACTATATCGGACTAAGTCCCGAAGGCA
TTTATGCTAGTGATC
Found at i:76339326 original size:712 final size:708
Alignment explanation
Indices: 76337956--76339375 Score: 2374
Period size: 712 Copynumber: 2.0 Consensus size: 708
76337946 ATTTTGTGCT
76337956 ATTTATGTTAAGGGCTAGTTGAAGCATGGAAACTATGAAATAGGTAAAGCCTACCTTAAAGACAG
1 ATTTATGTTAAGGGCTAGTTGAAGCATGGAAACTATGAAATAGGTAAAGCCTACCTTAAAGACAG
* *
76338021 ATGCTGACAGCTGCAGTGACGTGGATGTGAAAAATCACTAAAAATATAGAATGGAATTAAATAGT
66 ATGCTGACAGCTGCAGTGACATGGATGTGAAAAATCACTAAAAATATAGAATAGAATTAAATAGT
*
76338086 GAATAAATTATGTAAATGAACCTTGACGAGTCTATTTTCATAGGAGAGTAACGAAACGATCATAT
131 GAATAAATTATGTAAACGAACCTTGACGAGTCTATTTTCATAGGAGAGTAACGAAACGATCATAT
* *
76338151 GAACAGTATGTTAAGAGATATTTAAGTTTTCGTGAGACAGGGCCAGAACGGTTTCTGGAGTCCCT
196 GAACAGTATGTTAAGAGAGATTTAAGTTTTCGTAAGACAGGGCCAGAACGGTTTCTGGAGTCCCT
* *
76338216 GTTCCGACTTTGGAAATTCATTATAAATTGACCAGAGATAATTAGAAGTCATGCCATATATGTAA
261 ATTCCAACTTTGGAAATTCATTATAAATTGACCAGAGATAATTAGAAGTCATGCCATATATGTAA
*
76338281 GATTCTTTTCGAGTATAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGCCCTGTACAGGGAG
326 AATTCTTTTCGAGTATAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGCCCTGTACAGGGAG
* * *
76338346 ATATCCAAATCGTAATGCATGAAGGTCAGTGTAGTCGCACCCTGTAACAGGGGAGATTTTAACTA
391 ATATCCAAATCGTAATGAAGGAAGGTCAGTGTAGTCGCACCCTGTAACAGGGGAGACTTTAACTA
* * *
76338411 ATAAACTGTACTAATTGGCCCGACTAAAAATTCTAGAAAACAATCTGTAGATGGACATATGAGTC
456 ATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATCTGTAGATGCACATATGAGTC
* * * *
76338476 TAGTTTCAGGGAAAAATTACGGAACTGATTTTCGAGTTTTGGAACTCAAGATATGATTTTTAAGG
521 TAGTTTCAGGGAAAAATCACGAAACTGATTTTCAAGTTGTGGAACTCAAGATATGATTTTTAAGG
* * *
76338541 TGACAGTGACGCAGTTAGCCAACTGCCTGAAAATTTTTAAATTGGACTGTGAAAGTAAGGGGATT
586 TGACAGTGACACAGTTAGCCAACTGCCTGAAAATTTTTAAAATGAACTGTGAAAGTAAGGGGATT
* *
76338606 AAGCCCGTTAACCCC-CGTGTCTGACTCCGGCGACGGTCTCGGGTACGGGGTGTTACA
651 AAGCCCGTTAACCCCTCGTGTCCGACTCCAGCGACGGTCTCGGGTACGGGGTGTTACA
* *
76338663 ATTTATGTTTATGGGCTAGTTGAATCATGGAAACTATGAAATAGGTAAAGCCTACCTTAAAGACA
1 ATTTATG-TTAAGGGCTAGTTGAAGCATGGAAACTATGAAATAGGTAAAGCCTACCTTAAAGACA
* * *
76338728 GATGCTGATAGCTGCAGTGATATGGATGTGAAAAATCCCTAAAAATAGTAGGAATAGAATTAAAT
65 GATGCTGACAGCTGCAGTGACATGGATGTGAAAAATCACTAAAAATA-TA-GAATAGAATTAAAT
* *
76338793 AGTGAATAAATTATGTAAACGAATCTTGACGAGTCTATTTTCATAGGAGAGTAACGAAATGATCA
128 AGTGAATAAATTATGTAAACGAACCTTGACGAGTCTATTTTCATAGGAGAGTAACGAAACGATCA
*
76338858 TATGAACAGTATGTTAAGAGAGATTTAAGTTTTTGTAAGACAGGGCCAGAACGGTTTCTGGAGTC
193 TATGAACAGTATGTTAAGAGAGATTTAAGTTTTCGTAAGACAGGGCCAGAACGGTTTCTGGAGTC
* * *
76338923 CCTATTCCAACTTTGGAAATTCATTATAAATTGATCAGAGATAATTAGAAGTCTTTCCATATATG
258 CCTATTCCAACTTTGGAAATTCATTATAAATTGACCAGAGATAATTAGAAGTCATGCCATATATG
* *
76338988 TACAAATTCCTTTTCGAGTCTAGTTTCTGTAGAAACAAACGGCATCAGTATTGAAGCCCTGTACA
323 TA-AAATT-CTTTTCGAGTATAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGCCCTGTACA
76339053 GGGAGATATCCAAATCGTAATGAAGGAAGGTCAGTGTAGTCGCACCCTGTAACAGGGGAGACTTT
386 GGGAGATATCCAAATCGTAATGAAGGAAGGTCAGTGTAGTCGCACCCTGTAACAGGGGAGACTTT
* * * *
76339118 AACTAATAAACTGTACTAATTGGCTCGACCAAAAATTCTAGAAAAAAATTTGTAGATTCATATAT
451 AACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATCTGTAGATGCACATAT
76339183 GAGTCTAGTTTCAGGGAAAAATCACGAAACTGATTTTCAAGTTGTGGAACTCAAGATATGATTTT
516 GAGTCTAGTTTCAGGGAAAAATCACGAAACTGATTTTCAAGTTGTGGAACTCAAGATATGATTTT
* * * * *
76339248 TAAGGTGACAGTGACACAGTTAGCCAGCTGTCTGGAAATTTTTAAAATGAACTGTGCAAGTAAGT
581 TAAGGTGACAGTGACACAGTTAGCCAACTGCCTGAAAATTTTTAAAATGAACTGTGAAAGTAAGG
*
76339313 GGATTAAGCCCGTTAACCCCTCGTGTCCGACTCTAGCGACGGTCTCGGGTACGGGGTGTTACA
646 GGATTAAGCCCGTTAACCCCTCGTGTCCGACTCCAGCGACGGTCTCGGGTACGGGGTGTTACA
76339376 GTTTTATTGG
Statistics
Matches: 661, Mismatches: 46, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
707 7 0.01
708 98 0.15
709 2 0.00
710 199 0.30
711 4 0.01
712 312 0.47
713 39 0.06
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (708 bp):
ATTTATGTTAAGGGCTAGTTGAAGCATGGAAACTATGAAATAGGTAAAGCCTACCTTAAAGACAG
ATGCTGACAGCTGCAGTGACATGGATGTGAAAAATCACTAAAAATATAGAATAGAATTAAATAGT
GAATAAATTATGTAAACGAACCTTGACGAGTCTATTTTCATAGGAGAGTAACGAAACGATCATAT
GAACAGTATGTTAAGAGAGATTTAAGTTTTCGTAAGACAGGGCCAGAACGGTTTCTGGAGTCCCT
ATTCCAACTTTGGAAATTCATTATAAATTGACCAGAGATAATTAGAAGTCATGCCATATATGTAA
AATTCTTTTCGAGTATAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGCCCTGTACAGGGAG
ATATCCAAATCGTAATGAAGGAAGGTCAGTGTAGTCGCACCCTGTAACAGGGGAGACTTTAACTA
ATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATCTGTAGATGCACATATGAGTC
TAGTTTCAGGGAAAAATCACGAAACTGATTTTCAAGTTGTGGAACTCAAGATATGATTTTTAAGG
TGACAGTGACACAGTTAGCCAACTGCCTGAAAATTTTTAAAATGAACTGTGAAAGTAAGGGGATT
AAGCCCGTTAACCCCTCGTGTCCGACTCCAGCGACGGTCTCGGGTACGGGGTGTTACA
Found at i:76346342 original size:24 final size:24
Alignment explanation
Indices: 76346315--76346453 Score: 260
Period size: 24 Copynumber: 5.8 Consensus size: 24
76346305 GCTGGAAATA
76346315 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
76346339 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
76346363 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
76346387 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
76346411 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
76346435 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
76346454 ACATAATAAG
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 113 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:76346467 original size:72 final size:72
Alignment explanation
Indices: 76346314--76346475 Score: 245
Period size: 72 Copynumber: 2.2 Consensus size: 72
76346304 TGCTGGAAAT
* *
76346314 ATATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTG
**
76346379 CGATTTA
66 CGACATA
* * *
76346386 CTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTG
76346451 CGAACATA
66 CG-ACATA
76346459 ATA-AGCACTATGTGTGC
1 ATATAGCACTATGTGTGC
76346476 CACTTCGGTT
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
72 77 0.94
73 5 0.06
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (72 bp):
ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTG
CGACATA
Found at i:76354119 original size:24 final size:24
Alignment explanation
Indices: 76354092--76354230 Score: 242
Period size: 24 Copynumber: 5.8 Consensus size: 24
76354082 GCTGGAAATA
76354092 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
76354116 TATGGCACTATGTGTGCGATCCAC
1 TATGGCACTATGTGTGCGATTTAC
76354140 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
76354164 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
76354188 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
76354212 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
76354231 ACATAATAAG
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 109 1.00
ACGTcount: A:0.20, C:0.19, G:0.27, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:76354244 original size:48 final size:48
Alignment explanation
Indices: 76354095--76354252 Score: 205
Period size: 48 Copynumber: 3.3 Consensus size: 48
76354085 GGAAATATAT
*
76354095 GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACT-AT-
1 GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA-ACA-TAATA
** *
76354143 GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTA
1 GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA
**
76354190 TGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATAATA
1 -GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA
*
76354239 AGCACTATGTGTGC
1 GGCACTATGTGTGC
76354253 CACTTCGGTT
Statistics
Matches: 96, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
45 1 0.01
46 1 0.01
48 89 0.93
49 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (48 bp):
GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA
Found at i:76354244 original size:72 final size:72
Alignment explanation
Indices: 76354091--76354252 Score: 245
Period size: 72 Copynumber: 2.2 Consensus size: 72
76354081 TGCTGGAAAT
*
76354091 ATATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTG
**
76354156 CGATTTA
66 CGACATA
* * * *
76354163 CTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTG
76354228 CGAACATA
66 CG-ACATA
76354236 ATA-AGCACTATGTGTGC
1 ATATAGCACTATGTGTGC
76354253 CACTTCGGTT
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
72 77 0.94
73 5 0.06
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (72 bp):
ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTG
CGACATA
Found at i:76357927 original size:26 final size:28
Alignment explanation
Indices: 76357874--76357941 Score: 113
Period size: 26 Copynumber: 2.5 Consensus size: 28
76357864 AATTTGTACG
76357874 GCACTAAGTGTGCGAGTTTGATCATATA
1 GCACTAAGTGTGCGAGTTTGATCATATA
*
76357902 GCACTAAGTG-GCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATCATATA
76357928 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
76357942 GACTCACTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
26 20 0.53
27 8 0.21
28 10 0.26
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATCATATA
Found at i:76365348 original size:80 final size:80
Alignment explanation
Indices: 76365264--76365412 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
76365254 TATGGTAACC
* * * *
76365264 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
76365328 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
76365344 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
76365409 CCGG
66 CCGG
76365413 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:76365354 original size:40 final size:38
Alignment explanation
Indices: 76365305--76365412 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
76365295 ATCACGATTT
*
76365305 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
76365345 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
76365385 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
76365413 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:76373377 original size:80 final size:80
Alignment explanation
Indices: 76373293--76373441 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
76373283 TATGGTAACC
* * * *
76373293 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
76373357 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
76373373 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
76373438 CCGG
66 CCGG
76373442 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:76373383 original size:40 final size:38
Alignment explanation
Indices: 76373334--76373441 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
76373324 ATCACGATTT
*
76373334 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
76373374 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
76373414 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
76373442 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:76383158 original size:571 final size:571
Alignment explanation
Indices: 76382076--76383215 Score: 2226
Period size: 571 Copynumber: 2.0 Consensus size: 571
76382066 TTGGAATATG
*
76382076 AATCGGCTAGGCTTGGGTAACCAAGAAAATGCATGCATTTCATTTTACGAGCTTAGGGACTAAAC
1 AATCGGCTAGGCTTGGGTAACCAAGAAAATGCATGCATTTCATTTTACGAGCCTAGGGACTAAAC
*
76382141 TGTAAATAAGTGAAAAGTTAGGAGTAAAAAGGTGATTTTACCAAAGTATGTGTTATGGGTCGATA
66 TATAAATAAGTGAAAAGTTAGGAGTAAAAAGGTGATTTTACCAAAGTATGTGTTATGGGTCGATA
76382206 TGAGCAATGTATGTATTAAACAAGTTGAATTTGACATTATAGATCAAGAAAAACGTGATTCGGGT
131 TGAGCAATGTATGTATTAAACAAGTTGAATTTGACATTATAGATCAAGAAAAACGTGATTCGGGT
76382271 CTTGATTAGGGGAAAATTAAAGTTTACGAGGATTAGACTCGTTTCTATCATTTTGTACCGAGGTA
196 CTTGATTAGGGGAAAATTAAAGTTTACGAGGATTAGACTCGTTTCTATCATTTTGTACCGAGGTA
76382336 AGTTCATTTGCAAATAATGCAACATGTACCATACTTTAAAAGCTTTAATATTGCATGCATGGTAA
261 AGTTCATTTGCAAATAATGCAACATGTACCATACTTTAAAAGCTTTAATATTGCATGCATGGTAA
76382401 GTATATATGTTATTAATGTGAGGTTATATCATGTGTTTATTGCCTAAATTTCATCATGAATTATG
326 GTATATATGTTATTAATGTGAGGTTATATCATGTGTTTATTGCCTAAATTTCATCATGAATTATG
76382466 CTTCGATTATTCCATGGATATGTGATTGGTGCTATGAGTATTGAAATTGACATTACGAGCAAGGT
391 CTTCGATTATTCCATGGATATGTGATTGGTGCTATGAGTATTGAAATTGACATTACGAGCAAGGT
76382531 CAACAAAAATTTGGTATCGAATAATCTCGTTTGAACCTTAGGAATAGTTTAGGATACAAATGACA
456 CAACAAAAATTTGGTATCGAATAATCTCGTTTGAACCTTAGGAATAGTTTAGGATACAAATGACA
76382596 TGTCACTAGGAACTTTGTAATCTGAACTCATTGAGTTGTGGTCTAAGTTGT
521 TGTCACTAGGAACTTTGTAATCTGAACTCATTGAGTTGTGGTCTAAGTTGT
76382647 AATCGGCTAGGCTTGGGTAACCAAGAAAATGCATGCATTTCATTTTACGAGCCTAGGGACTAAAC
1 AATCGGCTAGGCTTGGGTAACCAAGAAAATGCATGCATTTCATTTTACGAGCCTAGGGACTAAAC
76382712 TATAAATAAGTGAAAAGTTAGGAGTAAAAAGGTGATTTTACCAAAGTATGTGTTATGGGTCGATA
66 TATAAATAAGTGAAAAGTTAGGAGTAAAAAGGTGATTTTACCAAAGTATGTGTTATGGGTCGATA
76382777 TGAGCAATGTATGTATTAAACAAGTTGAATTTGACATTATAGATCAAGAAAAACGTGATTCGGGT
131 TGAGCAATGTATGTATTAAACAAGTTGAATTTGACATTATAGATCAAGAAAAACGTGATTCGGGT
76382842 CTTGATTAGGGGAAAATTAAAGTTTACGAGGATTAGACTCGTTTCTATCATTTTGTACCGAGGTA
196 CTTGATTAGGGGAAAATTAAAGTTTACGAGGATTAGACTCGTTTCTATCATTTTGTACCGAGGTA
*
76382907 AGTTCATTTGCAAATAATGCAACATGTACCATACTTTAAAAGCTTTAATATTGCATGTATGGTAA
261 AGTTCATTTGCAAATAATGCAACATGTACCATACTTTAAAAGCTTTAATATTGCATGCATGGTAA
76382972 GTATATATGTTATTAATGTGAGGTTATATCATGTGTTTATTGCCTAAATTTCATCATGAATTATG
326 GTATATATGTTATTAATGTGAGGTTATATCATGTGTTTATTGCCTAAATTTCATCATGAATTATG
*
76383037 CTTCGATTATTCCATGGATTTGTGATTGGTGCTATGAGTATTGAAATTGACATTACGAGCAAGGT
391 CTTCGATTATTCCATGGATATGTGATTGGTGCTATGAGTATTGAAATTGACATTACGAGCAAGGT
* *
76383102 CAACAAAAATTTGGTATCGAATAATCTGGTTTGAACCTTAGGAATAGTTTAGGATACAAGTGACA
456 CAACAAAAATTTGGTATCGAATAATCTCGTTTGAACCTTAGGAATAGTTTAGGATACAAATGACA
76383167 TGTCACTAGGAACTTTGTAATCTGAACTCATTGAGTTGTGGTCTAAGTT
521 TGTCACTAGGAACTTTGTAATCTGAACTCATTGAGTTGTGGTCTAAGTT
76383216 CATGATATAT
Statistics
Matches: 563, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
571 563 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (571 bp):
AATCGGCTAGGCTTGGGTAACCAAGAAAATGCATGCATTTCATTTTACGAGCCTAGGGACTAAAC
TATAAATAAGTGAAAAGTTAGGAGTAAAAAGGTGATTTTACCAAAGTATGTGTTATGGGTCGATA
TGAGCAATGTATGTATTAAACAAGTTGAATTTGACATTATAGATCAAGAAAAACGTGATTCGGGT
CTTGATTAGGGGAAAATTAAAGTTTACGAGGATTAGACTCGTTTCTATCATTTTGTACCGAGGTA
AGTTCATTTGCAAATAATGCAACATGTACCATACTTTAAAAGCTTTAATATTGCATGCATGGTAA
GTATATATGTTATTAATGTGAGGTTATATCATGTGTTTATTGCCTAAATTTCATCATGAATTATG
CTTCGATTATTCCATGGATATGTGATTGGTGCTATGAGTATTGAAATTGACATTACGAGCAAGGT
CAACAAAAATTTGGTATCGAATAATCTCGTTTGAACCTTAGGAATAGTTTAGGATACAAATGACA
TGTCACTAGGAACTTTGTAATCTGAACTCATTGAGTTGTGGTCTAAGTTGT
Found at i:76383218 original size:21 final size:21
Alignment explanation
Indices: 76383194--76383262 Score: 50
Period size: 21 Copynumber: 3.1 Consensus size: 21
76383184 TAATCTGAAC
76383194 TCATTGAGTTGTGGTCTAAGT
1 TCATTGAGTTGTGGTCTAAGT
* * * *
76383215 TCA-TGATATATATGACATCTAAGC
1 TCATTGA-GT-TGTG--GTCTAAGT
*
76383239 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTAAGT
76383260 TCA
1 TCA
76383263 AGATGTATGT
Statistics
Matches: 34, Mismatches: 9, Indels: 10
0.64 0.17 0.19
Matches are distributed among these distances:
20 3 0.09
21 12 0.35
22 3 0.09
23 3 0.09
24 10 0.29
25 3 0.09
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.39
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTAAGT
Found at i:76385422 original size:25 final size:24
Alignment explanation
Indices: 76385383--76385537 Score: 107
Period size: 25 Copynumber: 6.3 Consensus size: 24
76385373 CCGACACACC
**
76385383 ACAGCTCGTATGAGCTTGCCGTTAT
1 ACAGCTCACATGAGCTT-CCGTTAT
*
76385408 ACATCTCACATGAGCTTCTCGTTAT
1 ACAGCTCACATGAGCTTC-CGTTAT
* * *
76385433 ATAGCTCGCATGAGCTTCTCGATAT
1 ACAGCTCACATGAGCTTC-CGTTAT
* * *
76385458 TCAGCTCCCATGAGCTTCCCATTAT
1 ACAGCTCACATGAGCTT-CCGTTAT
* * *
76385483 TCAGTTCACATAAGCTTCCCGTTAT
1 ACAGCTCACATGAGCTT-CCGTTAT
* * *
76385508 TCAACTCGA-AGGAGCTTCCGTT-T
1 ACAGCTC-ACATGAGCTTCCGTTAT
76385531 ACAGCTC
1 ACAGCTC
76385538 GTATGAGCAT
Statistics
Matches: 105, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
23 6 0.06
24 6 0.06
25 91 0.87
26 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (24 bp):
ACAGCTCACATGAGCTTCCGTTAT
Found at i:76398535 original size:25 final size:25
Alignment explanation
Indices: 76398499--76398617 Score: 130
Period size: 25 Copynumber: 4.8 Consensus size: 25
76398489 GGACACACCA
*
76398499 CAGCTCGCATGAGCTTCCCGATATT
1 CAGCTCGAATGAGCTTCCCGATATT
*
76398524 CAGCTCAAATGAGCTTCCCGATATT
1 CAGCTCGAATGAGCTTCCCGATATT
* * ** *
76398549 CAACTTGTGTGAGCTTCCCGTTATT
1 CAGCTCGAATGAGCTTCCCGATATT
* * *
76398574 CAGCTCGCATGAGCTTTCCAATATT
1 CAGCTCGAATGAGCTTCCCGATATT
* *
76398599 CAGCTCGAAGGAGTTTCCC
1 CAGCTCGAATGAGCTTCCC
76398618 ATTTACAGCT
Statistics
Matches: 75, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 75 1.00
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (25 bp):
CAGCTCGAATGAGCTTCCCGATATT
Found at i:76398617 original size:50 final size:49
Alignment explanation
Indices: 76398499--76398636 Score: 127
Period size: 50 Copynumber: 2.8 Consensus size: 49
76398489 GGACACACCA
* *
76398499 CAGCTCGCATGAGCTTCCCGATATTCAGCTCAAATGAGCTTCCCGATATT
1 CAGCTCG-AGGAGCTTCCCGATATTCAGCTCAAATGAGCTTCCCAATATT
* * * * ** *
76398549 CAACTTGTGTGAGCTTCCCGTTATTCAGCTCGCATGAGCTTTCCAATATT
1 CAGCTCGAG-GAGCTTCCCGATATTCAGCTCAAATGAGCTTCCCAATATT
* *
76398599 CAGCTCGAAGGAGTTTCCC-AT-TTACAGCTCATATGAGC
1 CAGCTCG-AGGAGCTTCCCGATATT-CAGCTCAAATGAGC
76398637 ATACATGAAT
Statistics
Matches: 69, Mismatches: 16, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
48 2 0.03
49 13 0.19
50 53 0.77
51 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (49 bp):
CAGCTCGAGGAGCTTCCCGATATTCAGCTCAAATGAGCTTCCCAATATT
Found at i:76404143 original size:54 final size:54
Alignment explanation
Indices: 76404059--76404164 Score: 194
Period size: 54 Copynumber: 2.0 Consensus size: 54
76404049 AATATGAAAG
*
76404059 TATGGCATTAGGAGCATCGAATTCACCAATTTTAAGGAAAAGTCATCCATAACA
1 TATGGCATTAGGAGCATCGAATTCACCAATTTTAAGGAAAAATCATCCATAACA
*
76404113 TATGGCATTAGGAGCATCGAATTCATCAATTTTAAGGAAAAATCATCCATAA
1 TATGGCATTAGGAGCATCGAATTCACCAATTTTAAGGAAAAATCATCCATAA
76404165 AATGTGCTAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (54 bp):
TATGGCATTAGGAGCATCGAATTCACCAATTTTAAGGAAAAATCATCCATAACA
Found at i:76407014 original size:41 final size:41
Alignment explanation
Indices: 76406969--76407086 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
76406959 TGAAAGATAA
76406969 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
76407010 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76407040 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76407081 ATGTAG
1 ATGTAG
76407087 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:76407025 original size:71 final size:71
Alignment explanation
Indices: 76406937--76407100 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76406927 GAGATGTATC
76406937 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76407002 AGGACA
66 AGGACA
76407008 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76407073 AGGACA
66 AGGACA
76407079 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
76407101 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:76418308 original size:28 final size:28
Alignment explanation
Indices: 76418268--76418373 Score: 122
Period size: 28 Copynumber: 3.8 Consensus size: 28
76418258 GGAGGAAGCG
* *
76418268 TTCTGGTGGCTTTGCCACAAATATCTGT
1 TTCTGGTGACTCTGCCACAAATATCTGT
*
76418296 TTCTGGTGACTTTGCCACAAATATCTGT
1 TTCTGGTGACTCTGCCACAAATATCTGT
* * * * *
76418324 TTCTGATGGCCCTGCCACAATTATTTGT
1 TTCTGGTGACTCTGCCACAAATATCTGT
* *
76418352 ATCTGGTGACTCTGTCACAAAT
1 TTCTGGTGACTCTGCCACAAAT
76418374 CTATTCTAGC
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (28 bp):
TTCTGGTGACTCTGCCACAAATATCTGT
Found at i:76425778 original size:48 final size:48
Alignment explanation
Indices: 76425716--76425844 Score: 213
Period size: 48 Copynumber: 2.7 Consensus size: 48
76425706 TGAGTTATAA
* * *
76425716 CTTGATTTGGCTTCGGGCCATGGTATAGGTATTTCAGAGATGAGTTAC
1 CTTGATTTGGCTTCGGGCCATGGTATAGGTACTCCAGAGATAAGTTAC
*
76425764 CTTGATTTGGCTTCGGGCCATGGTATAGGTACTCCAGGGATAAGTTAC
1 CTTGATTTGGCTTCGGGCCATGGTATAGGTACTCCAGAGATAAGTTAC
*
76425812 CTTGATTTGGCTTCGGGCCATGGCATAGGTACT
1 CTTGATTTGGCTTCGGGCCATGGTATAGGTACT
76425845 TATCGTATGA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.33
Consensus pattern (48 bp):
CTTGATTTGGCTTCGGGCCATGGTATAGGTACTCCAGAGATAAGTTAC
Found at i:76433251 original size:38 final size:38
Alignment explanation
Indices: 76433180--76433345 Score: 154
Period size: 38 Copynumber: 4.3 Consensus size: 38
76433170 ATTCGATGTG
* **
76433180 TATCCGGGCTTAAAGACCCGCAGGCTTTA-TGCTGAAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGC-TTAGTGCTGGTATTA
* *
76433220 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
*
76433258 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
* * * * * *
76433296 TATCTGAGTTTAAAGACCCGTAGGCTTCGTGCTGGTGTTA
1 TATCCG-GGTTAAA-TCCCGCAGGCTTAGTGCTGGTATTA
* *
76433336 TGTTCGGGTT
1 TATCCGGGTT
76433346 TTATACCTTG
Statistics
Matches: 104, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
37 2 0.02
38 57 0.55
39 14 0.13
40 31 0.30
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
Found at i:76445875 original size:29 final size:29
Alignment explanation
Indices: 76445833--76445892 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
76445823 GGAACACTTA
76445833 AGGACTGTATGAAAAAACTAGAAACTGAT
1 AGGACTGTATGAAAAAACTAGAAACTGAT
* *
76445862 AGGACTGTATGAAAAAACTAGGAATTGAT
1 AGGACTGTATGAAAAAACTAGAAACTGAT
76445891 AG
1 AG
76445893 AAGAATAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.47, C:0.08, G:0.23, T:0.22
Consensus pattern (29 bp):
AGGACTGTATGAAAAAACTAGAAACTGAT
Found at i:76446218 original size:3 final size:3
Alignment explanation
Indices: 76446212--76446245 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
76446202 ATTTCATGTC
76446212 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
76446246 ATTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:76447618 original size:23 final size:22
Alignment explanation
Indices: 76447571--76447621 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
76447561 TTTGGTTTCC
76447571 TCTCTTTTCGACGTTCTTCTCT
1 TCTCTTTTCGACGTTCTTCTCT
76447593 TCTCTTTTC-ACGTT-TTCTTCT
1 TCTCTTTTCGACGTTCTTC-TCT
*
76447614 TTTCTTTT
1 TCTCTTTT
76447622 AATCTTTGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 3 0.11
21 15 0.56
22 9 0.33
ACGTcount: A:0.04, C:0.27, G:0.06, T:0.63
Consensus pattern (22 bp):
TCTCTTTTCGACGTTCTTCTCT
Found at i:76448810 original size:37 final size:37
Alignment explanation
Indices: 76448746--76448888 Score: 223
Period size: 37 Copynumber: 3.9 Consensus size: 37
76448736 AGCTCAGATG
* * *
76448746 AAATCTCCACACGAAGTTATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76448783 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76448820 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
76448857 TAATCTCCACACGTAGTCATCGGGCCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
76448889 AGAATATATT
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:76449067 original size:47 final size:47
Alignment explanation
Indices: 76448993--76449327 Score: 512
Period size: 47 Copynumber: 7.1 Consensus size: 47
76448983 CATACACATT
* ** * * *
76448993 TCACATTAGCCATTCGG-CTTCGCCACATATATACACT-TCCACGTTCA
1 TCACATTGGCCATTCGGCCTT-ATCACATATATGCA-TGTTCACATTCA
**
76449040 TCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
76449087 TCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
76449134 TCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
76449181 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
76449228 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
76449275 TCACATTGGCCATTCGGTCTTATCACATATTTGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
76449322 TCACAT
1 TCACAT
76449328 AGAATCCTAA
Statistics
Matches: 270, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 266 0.99
48 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:76449231 original size:25 final size:25
Alignment explanation
Indices: 76449202--76449279 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
76449192 ATTCGGCCTT
76449202 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
76449227 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
76449249 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
76449274 ATCACA
1 ATCACA
76449280 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:76453335 original size:27 final size:28
Alignment explanation
Indices: 76453278--76453347 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
76453268 AAACTTGTAC
*
76453278 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
76453306 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
76453333 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
76453348 GACACACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:76461673 original size:21 final size:21
Alignment explanation
Indices: 76461627--76461682 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
76461617 TATAGGCTAC
*
76461627 TCACACGAGCGTGTGTTCCCT
1 TCACACGAGCGTGTGTGCCCT
* * *
76461648 CCACACGAGTGTGTGTGGCCT
1 TCACACGAGCGTGTGTGCCCT
* *
76461669 TCACATGGGCGTGT
1 TCACACGAGCGTGT
76461683 AGATCCCACA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.14, C:0.29, G:0.30, T:0.27
Consensus pattern (21 bp):
TCACACGAGCGTGTGTGCCCT
Found at i:76461902 original size:97 final size:97
Alignment explanation
Indices: 76461731--76461926 Score: 331
Period size: 97 Copynumber: 2.0 Consensus size: 97
76461721 CACACGGCCG
**
76461731 TGTGGCCTTATGTTGCCAAATTTTGTATTGTGTCTATTTTTGATCTAATTGTGATTTTGTGTGTT
1 TGTGGCCTTATGTCACCAAATTTTGTATTGTGTCTATTTTTGATCTAATTGTGATTTTGTGTGTT
*
76461796 CCGATCCTTGGCTAGGTCTCTGTACA-GGTGGT
66 CCGACCCTTGGCTAGGTCTCTGTA-AGGGTGGT
*
76461828 TGTGGCCTTATGTCACCAAATTTTGTATTGTGTCTATTTTTGATCTGATTGTGATTTTGTGTGTT
1 TGTGGCCTTATGTCACCAAATTTTGTATTGTGTCTATTTTTGATCTAATTGTGATTTTGTGTGTT
*
76461893 CCGACCCTTGGTTAGGTCTCTGTAAGGGTGGT
66 CCGACCCTTGGCTAGGTCTCTGTAAGGGTGGT
76461925 TG
1 TG
76461927 GGAATTTGTT
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
96 1 0.01
97 92 0.99
ACGTcount: A:0.14, C:0.14, G:0.26, T:0.46
Consensus pattern (97 bp):
TGTGGCCTTATGTCACCAAATTTTGTATTGTGTCTATTTTTGATCTAATTGTGATTTTGTGTGTT
CCGACCCTTGGCTAGGTCTCTGTAAGGGTGGT
Found at i:76462721 original size:29 final size:29
Alignment explanation
Indices: 76462676--76462734 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
76462666 GGTCTCAGAC
76462676 AGCCATGTTTTAAAATCAACTTTAAAAGT
1 AGCCATGTTTTAAAATCAACTTTAAAAGT
*
76462705 AGCCATGTTTTAGAATCAACTTTAAAAGT
1 AGCCATGTTTTAAAATCAACTTTAAAAGT
76462734 A
1 A
76462735 TTTTCATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.34
Consensus pattern (29 bp):
AGCCATGTTTTAAAATCAACTTTAAAAGT
Found at i:76468429 original size:124 final size:124
Alignment explanation
Indices: 76468207--76468431 Score: 308
Period size: 124 Copynumber: 1.8 Consensus size: 124
76468197 GAATTATGTG
* * * ** * * *
76468207 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
76468272 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
76468331 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
*
76468396 GCTAAGTCCCGAAGATG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTGGAAATTATAT
76468432 CCGGGTTAAG
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
123 3 0.03
124 83 0.97
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:76468553 original size:40 final size:40
Alignment explanation
Indices: 76468426--76468555 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
76468416 TTGCTGGAAA
* *
76468426 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
76468466 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
76468506 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
76468546 TTATATCCGG
1 TTATATCCGG
76468556 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:76474145 original size:29 final size:29
Alignment explanation
Indices: 76474113--76474185 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
76474103 CTTCGAGCTC
*
76474113 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
76474142 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
76474171 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
76474186 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:76482274 original size:29 final size:29
Alignment explanation
Indices: 76482241--76482314 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
76482231 GTGACGAGAT
76482241 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76482270 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
76482299 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76482315 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:76482330 original size:29 final size:29
Alignment explanation
Indices: 76482298--76482371 Score: 89
Period size: 27 Copynumber: 2.6 Consensus size: 29
76482288 CTGGAAATAT
* *
76482298 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * *
76482327 ATGGCACT--GTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
76482354 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
76482372 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
27 22 0.59
29 15 0.41
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:76490137 original size:29 final size:29
Alignment explanation
Indices: 76490104--76490177 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
76490094 GTGACGAGAT
76490104 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76490133 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
76490162 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76490178 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:76490193 original size:29 final size:29
Alignment explanation
Indices: 76490161--76490236 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
76490151 CTGGAAATAT
* *
76490161 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
76490190 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
76490219 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
76490237 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:76490204 original size:58 final size:58
Alignment explanation
Indices: 76490104--76490236 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
76490094 GTGACGAGAT
* * * * * *
76490104 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
76490162 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
76490220 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
76490237 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:76492954 original size:70 final size:72
Alignment explanation
Indices: 76492871--76493034 Score: 289
Period size: 72 Copynumber: 2.3 Consensus size: 72
76492861 CGATTTGTCT
76492871 CGTAGCTCTCTTGTCTACATGGTGT-CTTCACTTGGAATC-A-CGCATGCGACCCAGCTACATTT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCAAGCGC-TGCGACCCAGCTACATTT
76492933 ATCTTTCA
65 ATCTTTCA
*
76492941 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCAAGCGCTGCGACCTAGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCAAGCGCTGCGACCCAGCTACATTTA
76493006 TCTTTCA
66 TCTTTCA
76493013 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76493035 GATACATCTT
Statistics
Matches: 90, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
70 25 0.28
71 14 0.16
72 48 0.53
73 3 0.03
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (72 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCAAGCGCTGCGACCCAGCTACATTTA
TCTTTCA
Found at i:76500489 original size:71 final size:71
Alignment explanation
Indices: 76500405--76500568 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
76500395 CGATTTGTCT
76500405 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
76500470 CTTTCA
66 CTTTCA
* *
76500476 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
76500541 CTTTCA
66 CTTTCA
76500547 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76500569 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:76500606 original size:71 final size:70
Alignment explanation
Indices: 76500405--76500602 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
76500395 CGATTTGTCT
* * * * *
76500405 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76500470 CTTTCA
65 CTTTCA
* * * *
76500476 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76500541 CTTTCA
65 CTTTCA
* *
76500547 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
76500603 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:76509692 original size:42 final size:43
Alignment explanation
Indices: 76509631--76509726 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 43
76509621 TGAGATTTAT
* *
76509631 GTGTAAGACCATGTCTGGGACATAGGCATCG-TATCT-AATTTC
1 GTGTAAGACCATGTCTGGGACAGAGGCATCGATA-CTAAATTAC
* *
76509673 GTGTAAGACCCTGTTTGGGACAGAGGCATCGATACTAAATTAC
1 GTGTAAGACCATGTCTGGGACAGAGGCATCGATACTAAATTAC
*
76509716 ATGTAAGACCA
1 GTGTAAGACCA
76509727 CGTCCGAGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 30 0.65
43 16 0.35
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGAGGCATCGATACTAAATTAC
Found at i:76512507 original size:38 final size:39
Alignment explanation
Indices: 76512455--76512597 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
76512445 GAATGTTCGA
76512455 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
76512494 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
76512532 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
76512571 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
76512598 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:76512543 original size:77 final size:79
Alignment explanation
Indices: 76512456--76512637 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
76512446 AATGTTCGAG
76512456 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
76512519 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
76512533 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
76512598 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
76512612 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
76512638 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:76520535 original size:39 final size:39
Alignment explanation
Indices: 76520481--76520624 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
76520471 GAATGTTCGA
76520481 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
76520520 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
76520559 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
76520598 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
76520625 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:76520571 original size:78 final size:79
Alignment explanation
Indices: 76520482--76520664 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
76520472 AATGTTCGAG
76520482 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
76520546 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
76520560 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
76520625 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
76520639 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
76520665 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Done.