Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 256 of 770
Found at i:76813577 original size:23 final size:24
Alignment explanation
Indices: 76813546--76813590 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
76813536 CGCCCCAAAT
*
76813546 TTTGGGCCT-AGAAGTA-TTAGGTC
1 TTTGAGCCTGAGAA-TAGTTAGGTC
76813569 TTTGAGCCTGAGAATAGTTAGG
1 TTTGAGCCTGAGAATAGTTAGG
76813591 AGGATGCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.24, C:0.11, G:0.31, T:0.33
Consensus pattern (24 bp):
TTTGAGCCTGAGAATAGTTAGGTC
Found at i:76815438 original size:27 final size:27
Alignment explanation
Indices: 76815397--76815580 Score: 235
Period size: 27 Copynumber: 6.7 Consensus size: 27
76815387 TCTGAATTGA
* *
76815397 TAAAATGATTATTTTGCCCTT-TCGTGG
1 TAAAATGACTGTTTTGCCCTTAT-GTGG
* *
76815424 TAAAATGACTGTTTTGCCCTCAAGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
76815451 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
76815478 TAAGATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
76815505 TAAAATGACTGTTTTGCCCTATATATGA
1 TAAAATGACTGTTTTGCCCT-TATGTGG
* *
76815533 TAAAATGACTGTTTTGCCCTATATATGA
1 TAAAATGACTGTTTTGCCCT-TATGTGG
*
76815561 TAAAATGACTGTTTTTCCCT
1 TAAAATGACTGTTTTGCCCT
76815581 ATACATGTAT
Statistics
Matches: 142, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
27 90 0.63
28 52 0.37
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:76824414 original size:67 final size:64
Alignment explanation
Indices: 76824216--76824431 Score: 183
Period size: 68 Copynumber: 3.3 Consensus size: 64
76824206 TATAGATGGT
* ** *
76824216 ATGTAGCTAGGTCACATGTATGG--TGCTAAGTGCACATCATGT-GTACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCACATGTGTGGTATGGGAAG-G-ACACCATGTAG-ACAAGAGAGCTACGAGAT
76824278 ACTA
63 A--A
* * * * *
76824282 TGTGGTAGCTAGGTCACATGTGTGGTATGGGATGTATACCATGTAGACAAGAGAGTTAC-AGGAT
1 -AT-GTAGCTAGGTCACATGTGTGGTATGGGAAGGACACCATGTAGACAAGAGAGCTACGA-GAT
76824346 AA
63 AA
*
76824348 ATGTAGCTAGGTCGCATGTGTGGT-TCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCACATGTGTGGTAT---GG-GAAGGACACCATGTAGACAAGAGAGCTACGAGA
76824412 TAA
62 TAA
*
76824415 A-GTGGCTAGGTCACATG
1 ATGTAGCTAGGTCACATG
76824432 GGTAGTACTA
Statistics
Matches: 122, Mismatches: 17, Indels: 21
0.76 0.11 0.13
Matches are distributed among these distances:
63 1 0.01
64 21 0.17
65 1 0.01
66 17 0.14
67 33 0.27
68 44 0.36
69 1 0.01
70 4 0.03
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCACATGTGTGGTATGGGAAGGACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:76837032 original size:26 final size:25
Alignment explanation
Indices: 76836978--76837060 Score: 103
Period size: 26 Copynumber: 3.2 Consensus size: 25
76836968 ACATATTCTC
* *
76836978 TCAAAATTTTACTAGGGAAAAATCG
1 TCAAAATTTTACTAGGGTAAAATCA
*
76837003 TCAAATTTTTACTAGGGGTAAAATCA
1 TCAAAATTTTACTA-GGGTAAAATCA
*
76837029 TCAAAATTTTACCAAGGGTAAAATCA
1 TCAAAATTTTA-CTAGGGTAAAATCA
*
76837055 GCAAAA
1 TCAAAA
76837061 AATTTTAGGG
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
25 13 0.26
26 35 0.70
27 2 0.04
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.28
Consensus pattern (25 bp):
TCAAAATTTTACTAGGGTAAAATCA
Found at i:76842108 original size:24 final size:24
Alignment explanation
Indices: 76842076--76842162 Score: 174
Period size: 24 Copynumber: 3.6 Consensus size: 24
76842066 AATCTCAAAT
76842076 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
76842100 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
76842124 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
76842148 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
76842163 ACATAATAAG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:76842176 original size:48 final size:48
Alignment explanation
Indices: 76842076--76842184 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
76842066 AATCTCAAAT
** * *
76842076 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
76842124 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ACATAATATA
76842172 GCACTATGTGTGC
1 GCACTATGTGTGC
76842185 AACATTCGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 51 0.91
49 5 0.09
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
Found at i:76845082 original size:80 final size:80
Alignment explanation
Indices: 76844998--76845146 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
76844988 TATGGTAACC
* * * *
76844998 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
76845062 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
76845078 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
76845143 CCGG
66 CCGG
76845147 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:76845088 original size:40 final size:38
Alignment explanation
Indices: 76845039--76845146 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
76845029 ATCACGATTT
*
76845039 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
76845079 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
76845119 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
76845147 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:76848403 original size:21 final size:21
Alignment explanation
Indices: 76848378--76848455 Score: 59
Period size: 27 Copynumber: 3.4 Consensus size: 21
76848368 TGATTCATAT
76848378 TTTGAAAATAAAAACATGCCA
1 TTTGAAAATAAAAACATGCCA
76848399 TTTGAAGGCCAAAATAAAAACATGCCA
1 TTT----G--AAAATAAAAACATGCCA
* *
76848426 TTTTGAAATTAAAAACAAG-CA
1 -TTTGAAAATAAAAACATGCCA
*
76848447 TTTAAAAAT
1 TTTGAAAAT
76848456 GGCCAAAATG
Statistics
Matches: 46, Mismatches: 4, Indels: 15
0.71 0.06 0.23
Matches are distributed among these distances:
20 7 0.15
21 5 0.11
22 12 0.26
24 1 0.02
25 1 0.02
27 17 0.37
28 3 0.07
ACGTcount: A:0.51, C:0.13, G:0.10, T:0.26
Consensus pattern (21 bp):
TTTGAAAATAAAAACATGCCA
Found at i:76848438 original size:22 final size:22
Alignment explanation
Indices: 76848376--76848442 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 22
76848366 TGTGATTCAT
76848376 ATTTTGAAAATAAAAACATGCC
1 ATTTTGAAAATAAAAACATGCC
*
76848398 ATTTGAAGGCCAAAATAAAAACATGCC
1 ATTT---TG--AAAATAAAAACATGCC
*
76848425 ATTTTGAAATTAAAAACA
1 ATTTTGAAAATAAAAACA
76848443 AGCATTTAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
22 15 0.41
24 1 0.03
25 1 0.03
27 20 0.54
ACGTcount: A:0.51, C:0.13, G:0.10, T:0.25
Consensus pattern (22 bp):
ATTTTGAAAATAAAAACATGCC
Found at i:76850259 original size:70 final size:70
Alignment explanation
Indices: 76850100--76850266 Score: 237
Period size: 70 Copynumber: 2.4 Consensus size: 70
76850090 GGCTATATAC
*
76850100 GACACTTAGTGTGTGAAACATCGAGTAAGGCACTTAGTGTGCAGAATTATAATAGTTTTGACTAT
1 GACACTTAGTGTGTGAAACATCGAGTAAGGCACTTAGTGTGCAAAATTATAATAGTTTTGACTAT
* *
76850165 GCGTT
66 ACGAT
*** *
76850170 GACACTTAGTGTAAAAAACATCGAGTAAGGCACTTAGTGTGCAAAATTATATTAGCTTTTG-CTA
1 GACACTTAGTGTGTGAAACATCGAGTAAGGCACTTAGTGTGCAAAATTATAATAG-TTTTGACTA
76850234 TACGAT
65 TACGAT
* *
76850240 GGCACTTAGTGTGTGAAACATCAAGTA
1 GACACTTAGTGTGTGAAACATCGAGTA
76850267 TTCGACAGTG
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
70 79 0.94
71 5 0.06
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (70 bp):
GACACTTAGTGTGTGAAACATCGAGTAAGGCACTTAGTGTGCAAAATTATAATAGTTTTGACTAT
ACGAT
Found at i:76851899 original size:40 final size:39
Alignment explanation
Indices: 76851855--76852079 Score: 272
Period size: 40 Copynumber: 5.7 Consensus size: 39
76851845 GCCACTAGCT
*
76851855 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
76851895 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
76851934 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * *
76851974 CAAACGCCTTCGGGACTTAGTCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
76852014 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
*
76852054 CAAATG-CTCTCAGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
76852080 TATCATCCGA
Statistics
Matches: 164, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 40 0.24
40 124 0.76
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:76851953 original size:79 final size:80
Alignment explanation
Indices: 76851855--76852039 Score: 282
Period size: 79 Copynumber: 2.3 Consensus size: 80
76851845 GCCACTAGCT
* * * *
76851855 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
76851920 -TATAATAACTCGCA
66 ATATAATAACTCGCA
* *
76851934 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
76851999 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
76852014 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76852040 ATTAGCCACT
Statistics
Matches: 96, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 59 0.61
80 37 0.39
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:76859562 original size:40 final size:39
Alignment explanation
Indices: 76859525--76859706 Score: 221
Period size: 40 Copynumber: 4.7 Consensus size: 39
76859515 GCTACTCGTT
* *
76859525 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
* *
76859565 TAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
76859605 -AAATGCCTTCGGG-CTTA-CCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * *
76859641 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
76859682 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76859707 CATCATTCGA
Statistics
Matches: 126, Mismatches: 8, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
36 15 0.12
37 16 0.13
38 8 0.06
39 19 0.15
40 56 0.44
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:76859666 original size:76 final size:81
Alignment explanation
Indices: 76859525--76859706 Score: 234
Period size: 76 Copynumber: 2.3 Consensus size: 81
76859515 GCTACTCGTT
* * *
76859525 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
76859590 ATTTAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
**
76859605 -AAATGCCTTCGGG-CTTA-CCCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
*
76859665 GATATAGTCACTTAGCA
65 GATATAGTAACTTAGCA
76859682 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76859707 CATCATTCGA
Statistics
Matches: 89, Mismatches: 8, Indels: 11
0.82 0.07 0.10
Matches are distributed among these distances:
75 3 0.03
76 38 0.43
77 19 0.21
78 10 0.11
79 19 0.21
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:76863457 original size:40 final size:39
Alignment explanation
Indices: 76863413--76863637 Score: 263
Period size: 40 Copynumber: 5.7 Consensus size: 39
76863403 GCCACTAGCT
*
76863413 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
76863453 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* * * *
76863492 CTAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
76863532 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
76863572 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
*
76863612 CAAATG-CTCTCAGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
76863638 TATCATCCGA
Statistics
Matches: 162, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 39 0.24
40 123 0.76
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:76863511 original size:79 final size:80
Alignment explanation
Indices: 76863415--76863597 Score: 278
Period size: 79 Copynumber: 2.3 Consensus size: 80
76863405 CACTAGCTCA
* * ** *
76863415 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG-T
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAACGCCTTCGGGACTTAGCCCGGAT
*
76863479 ATAATAACTCGCACT
66 ATAATAACTCGCACG
*
76863494 AATGCCTTCGGGACTTAGCCCGGATATAATAGCTCACACAAACGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAACGCCTTCGGGACTTAGCCCGGAT
* *
76863559 ATAGTAGCTCGCACG
66 ATAATAACTCGCACG
76863574 AATGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
76863598 ATTAGCCACT
Statistics
Matches: 94, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 57 0.61
80 37 0.39
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAACGCCTTCGGGACTTAGCCCGGAT
ATAATAACTCGCACG
Found at i:76868063 original size:10 final size:10
Alignment explanation
Indices: 76868048--76868086 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
76868038 TGCTTTTGTA
76868048 CATGATATGC
1 CATGATATGC
76868058 CATGATATGC
1 CATGATATGC
76868068 ACATGATATGC
1 -CATGATATGC
76868079 CATGATAT
1 CATGATAT
76868087 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:76868072 original size:21 final size:21
Alignment explanation
Indices: 76868047--76868086 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
76868037 CTGCTTTTGT
76868047 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
76868068 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
76868087 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:76868191 original size:25 final size:25
Alignment explanation
Indices: 76868133--76868201 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
76868123 AGGAAGTTCT
*
76868133 AAAAGGGCTTTGCCCCAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
76868157 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
76868182 AAAAGGGCTTCGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
76868202 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 18 0.44
25 23 0.56
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:76868203 original size:24 final size:24
Alignment explanation
Indices: 76868133--76868208 Score: 107
Period size: 24 Copynumber: 3.1 Consensus size: 24
76868123 AGGAAGTTCT
* *
76868133 AAAAGGGCTTTGCCCCAGTTACCG
1 AAAAGGGCTTTGCCCCAGTTATCA
76868157 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAG-TTATCA
* *
76868182 AAAAGGGCTTCGCCCCAGTTATTA
1 AAAAGGGCTTTGCCCCAGTTATCA
76868206 AAA
1 AAA
76868209 GAGACTAGGC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
24 26 0.55
25 21 0.45
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTATCA
Found at i:76874038 original size:42 final size:42
Alignment explanation
Indices: 76873919--76874083 Score: 186
Period size: 42 Copynumber: 3.9 Consensus size: 42
76873909 TACCATTCCA
* * *
76873919 ATGCCATATCCCAGATATGGTCTTATATGTAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
* * * **
76873961 ATACCAATAGCCCAGCTATGGTCTTACACAAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
* * *
76874004 ATGCCATATCCCATATATGGTCTTATACGTAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
* * * *
76874046 ATGCCATAACCCAGATACGATCTTACACGTGGTCTCAT
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCAT
76874084 TAACCCTAAT
Statistics
Matches: 100, Mismatches: 22, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
42 66 0.66
43 34 0.34
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
Found at i:76878028 original size:27 final size:27
Alignment explanation
Indices: 76877990--76878049 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
76877980 TTAGTTTACC
76877990 AAATTATTGAAATGCCCTCAATTTGTA
1 AAATTATTGAAATGCCCTCAATTTGTA
76878017 AAATTATTGAAATGCCCTCAATTTGTA
1 AAATTATTGAAATGCCCTCAATTTGTA
76878044 AAATTA
1 AAATTA
76878050 CCGTTTTACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (27 bp):
AAATTATTGAAATGCCCTCAATTTGTA
Found at i:76878061 original size:27 final size:27
Alignment explanation
Indices: 76878031--76878239 Score: 274
Period size: 27 Copynumber: 7.7 Consensus size: 27
76878021 TATTGAAATG
** *
76878031 CCCTCAATTTGTAAAATTACCGTTTTA
1 CCCTCAATTTACAGAATTACCGTTTTA
* *
76878058 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCAATTTACAGAATTACCGTTTTA
76878085 CCCTCAATTTACAGAATTACCGTTTTA
1 CCCTCAATTTACAGAATTACCGTTTTA
76878112 CCCTCAATTTACAGAATTACCGTTTTA
1 CCCTCAATTTACAGAATTACCGTTTTA
* * * *
76878139 CCCTCGATTTATAAAATTATCGTTTTA
1 CCCTCAATTTACAGAATTACCGTTTTA
* * *
76878166 CCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCAATTTACAGAATTACCGTTTTA
*
76878193 CTCTCAATTTACAGAATTACCGTTTTA
1 CCCTCAATTTACAGAATTACCGTTTTA
** *
76878220 CCCTCGTTTTACAAAATTAC
1 CCCTCAATTTACAGAATTAC
76878240 TAAAATACCC
Statistics
Matches: 162, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 162 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCAATTTACAGAATTACCGTTTTA
Found at i:76878119 original size:81 final size:81
Alignment explanation
Indices: 76878031--76878239 Score: 310
Period size: 81 Copynumber: 2.6 Consensus size: 81
76878021 TATTGAAATG
** * *
76878031 CCCTCAATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTA
1 CCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTA
76878096 CAGAATTACCGTTTTA
66 CAGAATTACCGTTTTA
* * * *
76878112 CCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTATCGTTTTACCCTCGATTTA
1 CCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTA
* *
76878177 TAGAATTATCGTTTTA
66 CAGAATTACCGTTTTA
* *
76878193 CTCTCAATTTACAGAATTACCGTTTTACCCTCGTTTTACAAAATTAC
1 CCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTAC
76878240 TAAAATACCC
Statistics
Matches: 114, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 114 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTA
CAGAATTACCGTTTTA
Found at i:76878265 original size:54 final size:54
Alignment explanation
Indices: 76878031--76878267 Score: 249
Period size: 54 Copynumber: 4.4 Consensus size: 54
76878021 TATTGAAATG
* * *
76878031 CCCTCAATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCAATTTA
* * * * **
76878085 CCCTCAATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCAATTTA
* * * **
76878139 CCCTCGATTTATAAAATTATCGTTTTACCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCAATTTA
* * * * * * * **
76878193 CTCTCAATTTACAGAATTACCGTTTTACCCTCGTTTTACAAAATTACTAAAATA
1 CCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCAATTTA
* *
76878247 CCCTTGGTTTATAAAATTACC
1 CCCTCGATTTATAAAATTACC
76878268 AAAATACCCT
Statistics
Matches: 151, Mismatches: 32, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 151 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (54 bp):
CCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCAATTTA
Found at i:76878358 original size:27 final size:27
Alignment explanation
Indices: 76878232--76878382 Score: 187
Period size: 27 Copynumber: 5.6 Consensus size: 27
76878222 CTCGTTTTAC
* * *
76878232 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTGGTTTGT
* **
76878259 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
76878286 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
76878313 AAAATTACCAAAATACCCCTAGCTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
76878340 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
76878367 GAAATTATCAAAATAC
1 AAAATTACCAAAATAC
76878383 TCTCAATTTG
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 3 0.03
27 99 0.93
28 4 0.04
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:76878393 original size:81 final size:81
Alignment explanation
Indices: 76878232--76878412 Score: 197
Period size: 81 Copynumber: 2.2 Consensus size: 81
76878222 CTCGTTTTAC
* * * *
76878232 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACCAAAATACCCCTAGCTTATAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
**
76878297 AATACCCCTGGTTTGT
66 AATACCCCTAATTTGT
* ** * *
76878313 AAAATTACCAAAATACCCCTAGCTTGTAAAATTACCAAAATACCC-CTGATTTGTGAAATTATCA
1 AAAATTACCAAAATACCCCTAGCTTATAAAATTACCAAAATACCCTC-GATCAGTAAAATTACCA
*
76878377 AAATA-CTCTCAATTTGT
65 AAATACCCCT-AATTTGT
* *
76878394 AAAA-TATCGAAATACCCCT
1 AAAATTACCAAAATACCCCT
76878413 GTAGGGTAGA
Statistics
Matches: 84, Mismatches: 14, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
80 17 0.20
81 67 0.80
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTAGCTTATAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:76878394 original size:54 final size:53
Alignment explanation
Indices: 76878232--76878413 Score: 204
Period size: 54 Copynumber: 3.4 Consensus size: 53
76878222 CTCGTTTTAC
* * * * **
76878232 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCTCAATTTGT
* **
76878286 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGCTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCTC-AATTTGT
* * *
76878340 AAAATTACCAAAATACCCCTGATTTGTGAAATTATCAAAATACTCTCAATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATAC-CTCAATTTGT
* *
76878394 AAAA-TATCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
76878414 TAGGGTAGAA
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 17 0.16
54 90 0.83
55 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCTCAATTTGT
Found at i:76878478 original size:27 final size:27
Alignment explanation
Indices: 76878402--76878616 Score: 272
Period size: 27 Copynumber: 8.0 Consensus size: 27
76878392 GTAAAATATC
76878402 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
76878429 CAAATACCCC-GTAGGGTAGAATTA-T
1 GAAATACCCCTGTAGGGTAGAATTACT
*
76878454 CGAAATACCCCTATAGGGTAGAATTACT
1 -GAAATACCCCTGTAGGGTAGAATTACT
* *
76878482 AAAATAACCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
76878509 AAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
76878536 GAAATACCCGTGTAGGGTAAAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
76878563 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
76878590 GAGATACCCTTGTGGGGGTATAATTAC
1 GAAATACCCCTGT-AGGGTAGAATTAC
76878617 CATTTTGCCC
Statistics
Matches: 166, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
25 1 0.01
26 23 0.14
27 131 0.79
28 11 0.07
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:76878858 original size:25 final size:25
Alignment explanation
Indices: 76878820--76878914 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
76878810 AGGAAGTGCT
*
76878820 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
76878845 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
76878870 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
76878895 AAAAGGGCTTTTCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
76878915 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:76879171 original size:31 final size:31
Alignment explanation
Indices: 76879136--76879219 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
76879126 CGTTTGCAGT
76879136 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
76879167 AAAGGCTTCAGCCTAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
76879198 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
76879220 CTGAGATTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:76881430 original size:58 final size:58
Alignment explanation
Indices: 76881368--76881527 Score: 223
Period size: 58 Copynumber: 2.8 Consensus size: 58
76881358 ATTTAAGCCC
* * *
76881368 GCACACACAGTGCCATACCCTTCGAGC-TCGCAGACTTAGTGCCATATATTTCCAGCAT
1 GCACACTCAGTGCCATACCCTTCCAGCAT-GCACACTTAGTGCCATATATTTCCAGCAT
***
76881426 GCACACTCAGTGCCATATTTTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTCAGTGCCATACCCTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
***
76881484 GCACACTCAGTGCCATATTTTTCCAGCATGCACACTTAGTGCCA
1 GCACACTCAGTGCCATACCCTTCCAGCATGCACACTTAGTGCCA
76881528 ATCTCGTCAC
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
58 94 0.99
59 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (58 bp):
GCACACTCAGTGCCATACCCTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
Found at i:76881437 original size:29 final size:29
Alignment explanation
Indices: 76881405--76881527 Score: 210
Period size: 29 Copynumber: 4.2 Consensus size: 29
76881395 TCGCAGACTT
76881405 AGTGCCATATATTTCCAGCATGCACACTC
1 AGTGCCATATATTTCCAGCATGCACACTC
* *
76881434 AGTGCCATATTTTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTC
76881463 AGTGCCATATATTTCCAGCATGCACACTC
1 AGTGCCATATATTTCCAGCATGCACACTC
* *
76881492 AGTGCCATATTTTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTC
76881521 AGTGCCA
1 AGTGCCA
76881528 ATCTCGTCAC
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 88 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTC
Found at i:76885666 original size:45 final size:45
Alignment explanation
Indices: 76885572--76885666 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
76885562 AAACATGTAC
* ** **
76885572 CATATATATCACGAACTCAAACCACAACTCAATGAGTTCGGATGT
1 CATATATATCACGAACTCAAACCACAACTCAATAAGTTCAAATCA
*
76885617 CATATATATCATGAACTCAAACCACAACTCAATAAGTTCAAATCA
1 CATATATATCACGAACTCAAACCACAACTCAATAAGTTCAAATCA
76885662 CATAT
1 CATAT
76885667 CTCCTAGTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.25
Consensus pattern (45 bp):
CATATATATCACGAACTCAAACCACAACTCAATAAGTTCAAATCA
Found at i:76887355 original size:31 final size:31
Alignment explanation
Indices: 76887213--76887358 Score: 242
Period size: 31 Copynumber: 4.7 Consensus size: 31
76887203 TTAGTCTTGA
76887213 CATAT-ACTGGGCCGAAG-CTTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTT-CATAAAT
* *
76887243 CATATCACTAGGCCGAAACCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
76887274 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
76887305 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
76887336 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
76887359 ACTGTAAACG
Statistics
Matches: 108, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
30 5 0.05
31 98 0.91
32 5 0.05
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:76887429 original size:42 final size:42
Alignment explanation
Indices: 76887382--76887473 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
76887372 TAGCCCTTAG
76887382 GCCCATTTCAACATCACATGTAATGTCAAT-AGATGTATGCAA
1 GCCCATTTCAACATCACATGTAATGTCAATGA-ATGTATGCAA
*
76887424 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAACATCACATGTAATGTCAATGAATGTATGCAA
76887466 GCCCATTT
1 GCCCATTT
76887474 GAGGAGACTA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
42 47 0.98
43 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAACATCACATGTAATGTCAATGAATGTATGCAA
Found at i:76887661 original size:25 final size:25
Alignment explanation
Indices: 76887627--76887690 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
76887617 TAATAACCGG
76887627 GGCAAAGCCC-TTTCTGATAAACTGA
1 GGCAAAGCCCTTTTC-GATAAACTGA
* * *
76887652 GGCAAGGCCCTTTTCGGTAAACTGG
1 GGCAAAGCCCTTTTCGATAAACTGA
*
76887677 GGCAAAGCCTTTTT
1 GGCAAAGCCCTTTT
76887691 AGCACTTCCT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
25 29 0.88
26 4 0.12
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (25 bp):
GGCAAAGCCCTTTTCGATAAACTGA
Found at i:76888531 original size:27 final size:27
Alignment explanation
Indices: 76888501--76888565 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
76888491 GGGCATATTT
76888501 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
76888528 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
76888555 GTCTTTTTACC
1 GTCATTTTACC
76888566 TATTAGGGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:76888648 original size:27 final size:27
Alignment explanation
Indices: 76888618--76888725 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
76888608 GTAAATCTAC
76888618 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
76888645 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
** *
76888671 AAAAAGTTAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
76888701 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
76888726 ACAAATTGAG
Statistics
Matches: 66, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.02
27 40 0.61
28 7 0.11
29 17 0.26
30 1 0.02
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:76895145 original size:20 final size:22
Alignment explanation
Indices: 76895109--76895151 Score: 72
Period size: 20 Copynumber: 2.0 Consensus size: 22
76895099 TAGGAAAGGG
76895109 AAACGAACGAGAAATGGGCCAA
1 AAACGAACGAGAAATGGGCCAA
76895131 AAACGAA-GA-AAATGGGCCAA
1 AAACGAACGAGAAATGGGCCAA
76895151 A
1 A
76895152 GTATGAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 12 0.57
21 2 0.10
22 7 0.33
ACGTcount: A:0.53, C:0.16, G:0.26, T:0.05
Consensus pattern (22 bp):
AAACGAACGAGAAATGGGCCAA
Found at i:76911394 original size:40 final size:41
Alignment explanation
Indices: 76911305--76911454 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
76911295 CGCTGACTCA
* *
76911305 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
76911346 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
76911386 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
76911427 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
76911455 TAAACCCCGA
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 32 0.34
41 62 0.66
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:76913948 original size:40 final size:40
Alignment explanation
Indices: 76913904--76914089 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
76913894 GCTACACGTT
* * *
76913904 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
76913944 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
76913984 CAAATGCCTTC-GGATCTTAGTCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * ** *
76914024 CAAATGCCTTC-GGATCTTAGTCCGAATTTAGTCAGTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
76914065 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76914090 CATCATTCGA
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 111 0.87
41 14 0.11
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:76931242 original size:40 final size:39
Alignment explanation
Indices: 76931165--76931348 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 39
76931155 GCTACTCGTT
* * *
76931165 CAAATACCTTCGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCA
*
76931204 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
*
76931244 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * *
76931284 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
76931325 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG
76931349 CATCATTCGA
Statistics
Matches: 131, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
39 13 0.10
40 105 0.80
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:76932878 original size:40 final size:40
Alignment explanation
Indices: 76932770--76932879 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
76932760 ATTGAATGAT
* * * * *
76932770 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
76932810 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
76932850 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
76932880 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:76932894 original size:40 final size:39
Alignment explanation
Indices: 76932770--76932919 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
76932760 ATTGAATGAT
* * * * * * *
76932770 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
76932810 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
76932850 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
76932890 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
76932920 GGTTACCATA
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:76940912 original size:40 final size:40
Alignment explanation
Indices: 76940804--76940913 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
76940794 ATTGAATGAT
* * * * *
76940804 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
76940844 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
76940884 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
76940914 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:76940928 original size:40 final size:39
Alignment explanation
Indices: 76940804--76940953 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
76940794 ATTGAATGAT
* * * * * * *
76940804 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
76940844 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
76940884 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
76940924 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
76940954 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:76945714 original size:80 final size:80
Alignment explanation
Indices: 76945575--76945794 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 80
76945565 CCGAATCACG
* * * * * * * **
76945575 TGCCTTCGGGAT-TTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGCCTTAACCCGGATT
1 TGCCTTCGGG-TCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGAAA
*** *
76945638 TGGTAACTTGCA-CAA
65 TAACAACTCGCATCAA
* * *
76945653 TTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCATGAATGCCTTCGGGTCTTAGCCCGGAA
1 -TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGGAA
*
76945717 ATAACAACTCGCATGAA
64 ATAACAACTCGCATCAA
76945734 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
76945795 GTATAATTCA
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
79 14 0.12
80 100 0.85
81 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGAAAT
AACAACTCGCATCAA
Found at i:76945801 original size:40 final size:40
Alignment explanation
Indices: 76945654--76945800 Score: 233
Period size: 40 Copynumber: 3.7 Consensus size: 40
76945644 CTTGCACAAT
76945654 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCATGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCATGAA
*
76945694 TGCCTTCGGGTCTTAGCCCGGAAATAACAACTCGCATGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCATGAA
* *
76945734 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCATGAA
* *
76945774 TGCCTTCGGGACTTAGCCCGGGTATAA
1 TGCCTTCGGGTCTTAGCCCGGATATAA
76945801 TTCAAATGCT
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
40 99 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCATGAA
Found at i:76962433 original size:21 final size:21
Alignment explanation
Indices: 76962409--76962594 Score: 131
Period size: 21 Copynumber: 8.9 Consensus size: 21
76962399 TCGTGTTTGC
* *
76962409 TTTCCGTTTAGCTCTTATGAG
1 TTTCCGTTTAACCCTTATGAG
* * *
76962430 TTTCAG-TTAACTCATATGAG
1 TTTCCGTTTAACCCTTATGAG
* *
76962450 TTTCTGTTTAACCCTAATGAG
1 TTTCCGTTTAACCCTTATGAG
* *
76962471 TTTCCGTTTAACCCTAATGGG
1 TTTCCGTTTAACCCTTATGAG
* * *
76962492 TTTCCGTTTAGCTCTTTTGAG
1 TTTCCGTTTAACCCTTATGAG
* * *
76962513 CTTCAGTTTAACCCTTATGGG
1 TTTCCGTTTAACCCTTATGAG
* * * * *
76962534 TTTTCGTTCAGCTCTTCTGAG
1 TTTCCGTTTAACCCTTATGAG
* * * *
76962555 CTTCCGTTGAACCCTTACGGG
1 TTTCCGTTTAACCCTTATGAG
* *
76962576 TTTCCGTTTAGCACTTATG
1 TTTCCGTTTAACCCTTATG
76962595 TGCTTCTGTG
Statistics
Matches: 123, Mismatches: 41, Indels: 2
0.74 0.25 0.01
Matches are distributed among these distances:
20 17 0.14
21 106 0.86
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.42
Consensus pattern (21 bp):
TTTCCGTTTAACCCTTATGAG
Found at i:76962501 original size:42 final size:42
Alignment explanation
Indices: 76962409--76962600 Score: 181
Period size: 42 Copynumber: 4.6 Consensus size: 42
76962399 TCGTGTTTGC
* * *
76962409 TTTCCGTTTAGCTCTTATGAGTTTCAG-TTAACTC-ATATGAG
1 TTTCCGTTTAGCTCTTATGAGCTTCAGTTTAACCCTA-ATGGG
* * * * * *
76962450 TTTCTGTTTAACCCTAATGAGTTTCCGTTTAACCCTAATGGG
1 TTTCCGTTTAGCTCTTATGAGCTTCAGTTTAACCCTAATGGG
* *
76962492 TTTCCGTTTAGCTCTTTTGAGCTTCAGTTTAACCCTTATGGG
1 TTTCCGTTTAGCTCTTATGAGCTTCAGTTTAACCCTAATGGG
* * * * * * *
76962534 TTTTCGTTCAGCTCTTCTGAGCTTCCGTTGAACCCTTACGGG
1 TTTCCGTTTAGCTCTTATGAGCTTCAGTTTAACCCTAATGGG
* *
76962576 TTTCCGTTTAGCACTTATGTGCTTC
1 TTTCCGTTTAGCTCTTATGAGCTTC
76962601 TGTGCAGCCT
Statistics
Matches: 123, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
41 22 0.18
42 100 0.81
43 1 0.01
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.43
Consensus pattern (42 bp):
TTTCCGTTTAGCTCTTATGAGCTTCAGTTTAACCCTAATGGG
Found at i:76962577 original size:84 final size:83
Alignment explanation
Indices: 76962409--76962600 Score: 215
Period size: 84 Copynumber: 2.3 Consensus size: 83
76962399 TCGTGTTTGC
* * * *
76962409 TTTCCGTTTAGCTCTTATGAGTTTCAGTTAACTCATATGAGTTTCTGTTTAACCCTAATGAGTTT
1 TTTCCGTTTAGCTCTTATGAGCTTCAGTTAACCCATATGAGTTTCTGTTCAACCCTAATGAGCTT
* *
76962474 CCGTTTAACCCTAATGGG
66 CCGTTGAACCCTAACGGG
* * * * * **
76962492 TTTCCGTTTAGCTCTTTTGAGCTTCAGTTTAACCCTTATGGGTTT-TCGTTCAGCTCTTCTGAGC
1 TTTCCGTTTAGCTCTTATGAGCTTCAG-TTAACCCATATGAGTTTCT-GTTCAACCCTAATGAGC
*
76962556 TTCCGTTGAACCCTTACGGG
64 TTCCGTTGAACCCTAACGGG
* *
76962576 TTTCCGTTTAGCACTTATGTGCTTC
1 TTTCCGTTTAGCTCTTATGAGCTTC
76962601 TGTGCAGCCT
Statistics
Matches: 90, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
83 26 0.29
84 64 0.71
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.43
Consensus pattern (83 bp):
TTTCCGTTTAGCTCTTATGAGCTTCAGTTAACCCATATGAGTTTCTGTTCAACCCTAATGAGCTT
CCGTTGAACCCTAACGGG
Found at i:76967762 original size:25 final size:25
Alignment explanation
Indices: 76967688--76967765 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
76967678 CTCGGCCCTG
76967688 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
** *
76967713 TCACAT-T-GGCTA--TTCAGCCTT-A
1 TCACATATATAC-ACCTTCA-CATTCA
76967735 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
76967760 TCACAT
1 TCACAT
76967766 CTGCCATTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 11 0.28
23 6 0.15
24 6 0.15
25 17 0.43
ACGTcount: A:0.32, C:0.31, G:0.04, T:0.33
Consensus pattern (25 bp):
TCACATATATACACCTTCACATTCA
Found at i:76967811 original size:49 final size:47
Alignment explanation
Indices: 76967637--76967953 Score: 433
Period size: 47 Copynumber: 6.7 Consensus size: 47
76967627 CCCTTCGGGA
* * * * * *
76967637 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* * *
76967684 CCTGTCACATATATACACCTTCACATTCATCACATTGGCTATTCA-GC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATT-AGGC
76967731 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
76967778 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
76967827 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATT-AGGC
*
76967876 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
76967923 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
76967954 GCGTAAAATC
Statistics
Matches: 242, Mismatches: 18, Indels: 20
0.86 0.06 0.07
Matches are distributed among these distances:
46 2 0.01
47 150 0.62
48 2 0.01
49 87 0.36
50 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:76967834 original size:96 final size:94
Alignment explanation
Indices: 76967637--76967953 Score: 442
Period size: 96 Copynumber: 3.3 Consensus size: 94
76967627 CCCTTCGGGA
* * * * * * * *
76967637 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
* *
76967702 CTTCACATTCATCACATTGGCTATTCA-GC
66 CTTCACATTCATCACATCGGCCATT-AGGC
76967731 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGCCTTATCAC--ATATATA
*
76967795 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CACCTTCACATTCATCACATCGGCCATTAGGC
76967827 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCA-GCCTTATCACATATATA
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATT-AGGCCTTATCACATATATA
76967891 CACCTTCACATTCATCACATCGGCCATTAGGC
63 CACCTTCACATTCATCACATCGGCCATTAGGC
*
76967923 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
76967954 GCGTAAAATC
Statistics
Matches: 202, Mismatches: 13, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
94 57 0.28
95 2 0.01
96 108 0.53
97 2 0.01
98 32 0.16
99 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGC
Found at i:76971754 original size:43 final size:43
Alignment explanation
Indices: 76971693--76972040 Score: 601
Period size: 43 Copynumber: 8.1 Consensus size: 43
76971683 CCTTGCTCGA
** * *
76971693 ATCACCGGCATTAAGCCTGCTAAGCACGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
76971736 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* *
76971779 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
76971822 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCC-AATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
76971864 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGG-CCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
76971906 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
76971949 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
76971992 ATCACTGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
76972035 ATCACC
1 ATCACC
76972041 AGCATGACTG
Statistics
Matches: 291, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
41 2 0.01
42 76 0.26
43 213 0.73
ACGTcount: A:0.32, C:0.32, G:0.22, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:76971987 original size:170 final size:172
Alignment explanation
Indices: 76971693--76972040 Score: 601
Period size: 170 Copynumber: 2.0 Consensus size: 172
76971683 CCTTGCTCGA
**
76971693 ATCACCGGCATTAAGCCTGCTAAGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
1 ATCACCGGCACAAAGCCTGCTAAGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
* *
76971758 GGCTCGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCTCGAAGACCCGAATACATA
66 GGCACGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCACGAAGACCCGAATACATA
76971823 TCACCGGCACAAAGCCTGCTAGGCACGAAGGCCC-AATACAT
131 TCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* * *
76971864 ATCACCGGCACAAAGCCTGCTAGGCTCGAAG-GCCGAATACATATCACCGGCACAAAGCCTGCTA
1 ATCACCGGCACAAAGCCTGCTAAGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
*
76971928 GGCACGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACATA
66 GGCACGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCACGAAGACCCGAATACATA
*
76971993 TCACTGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
131 TCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
76972035 ATCACC
1 ATCACC
76972041 AGCATGACTG
Statistics
Matches: 167, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
170 127 0.76
171 40 0.24
ACGTcount: A:0.32, C:0.32, G:0.22, T:0.14
Consensus pattern (172 bp):
ATCACCGGCACAAAGCCTGCTAAGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
GGCACGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCACGAAGACCCGAATACATA
TCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:76972214 original size:42 final size:42
Alignment explanation
Indices: 76972023--76972234 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 42
76972013 AGGCACGAAG
* * * * * * *
76972023 GCCCGAATACATATCACCAGCATGACTGCTCTTCGGAACCTG
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * * * *
76972065 GTCCGG--ATACATCACTAGCATGAATGCTCTTCGGGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * *
76972105 GCCCGG--ATATATCACTAGCATGAATGCTCTTCGGGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
76972145 GCCCGGATGTA-A-CACCAGCACGAATGCTCTACGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
76972185 ACCCGGATATATATCGCCAGCACGAATGCTCTTCGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
76972227 GCCCGGAT
1 GCCCGGAT
76972235 CATCGTCGAG
Statistics
Matches: 144, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
40 103 0.72
41 2 0.01
42 39 0.27
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (42 bp):
GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
Found at i:76974283 original size:25 final size:25
Alignment explanation
Indices: 76974209--76974286 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
76974199 CTCGGCCCTG
76974209 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
** *
76974234 TCACAT-T-GGCTA--TTCAGCCTT-A
1 TCACATATATAC-ACCTTCA-CATTCA
76974256 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
76974281 TCACAT
1 TCACAT
76974287 CTGCCATTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 11 0.28
23 6 0.15
24 6 0.15
25 17 0.43
ACGTcount: A:0.32, C:0.31, G:0.04, T:0.33
Consensus pattern (25 bp):
TCACATATATACACCTTCACATTCA
Found at i:76974332 original size:49 final size:47
Alignment explanation
Indices: 76974158--76974474 Score: 433
Period size: 47 Copynumber: 6.7 Consensus size: 47
76974148 CCCTTCGGGA
* * * * * *
76974158 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* * *
76974205 CCTGTCACATATATACACCTTCACATTCATCACATTGGCTATTCA-GC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATT-AGGC
76974252 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
76974299 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
76974348 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATT-AGGC
*
76974397 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
76974444 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
76974475 GCGTAAAATC
Statistics
Matches: 242, Mismatches: 18, Indels: 20
0.86 0.06 0.07
Matches are distributed among these distances:
46 2 0.01
47 150 0.62
48 2 0.01
49 87 0.36
50 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:76974355 original size:96 final size:94
Alignment explanation
Indices: 76974158--76974474 Score: 442
Period size: 96 Copynumber: 3.3 Consensus size: 94
76974148 CCCTTCGGGA
* * * * * * * *
76974158 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
* *
76974223 CTTCACATTCATCACATTGGCTATTCA-GC
66 CTTCACATTCATCACATCGGCCATT-AGGC
76974252 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGCCTTATCAC--ATATATA
*
76974316 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CACCTTCACATTCATCACATCGGCCATTAGGC
76974348 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCA-GCCTTATCACATATATA
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATT-AGGCCTTATCACATATATA
76974412 CACCTTCACATTCATCACATCGGCCATTAGGC
63 CACCTTCACATTCATCACATCGGCCATTAGGC
*
76974444 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
76974475 GCGTAAAATC
Statistics
Matches: 202, Mismatches: 13, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
94 57 0.28
95 2 0.01
96 108 0.53
97 2 0.01
98 32 0.16
99 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGC
Found at i:76979528 original size:47 final size:47
Alignment explanation
Indices: 76979459--76980063 Score: 1012
Period size: 47 Copynumber: 12.9 Consensus size: 47
76979449 TAAGATCGAA
*
76979459 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
76979506 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
*
76979553 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
76979600 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
76979647 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
*
76979694 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAC
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
76979741 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
*
76979788 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
76979835 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
* *
76979882 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTTATAAGGCCGAA
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
* * * * * *
76979929 TGGCCAATGTGATGAATGTGAAAGTGTATATATGAGAAAAGACCTAA
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
* * * * * * *
76979976 TGGCCGATGTGGTGGATGTGAAGGTGTAAATATGTGATAAGGCCGAA
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
* * *
76980023 TGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAG
76980064 TCCCGAAGGG
Statistics
Matches: 529, Mismatches: 29, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 529 1.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (47 bp):
TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
Found at i:76981993 original size:40 final size:40
Alignment explanation
Indices: 76981938--76982173 Score: 445
Period size: 40 Copynumber: 5.9 Consensus size: 40
76981928 CTCGCCGATG
76981938 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
76981978 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
76982018 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
76982058 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
76982098 ATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
76982138 ATCCGGGCTAGGTCCCGAAGAGCATTCATGCTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
76982174 ATGTGTATTC
Statistics
Matches: 192, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 192 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
Found at i:76986372 original size:71 final size:71
Alignment explanation
Indices: 76986288--76986451 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76986278 CGATTTGTCT
76986288 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76986353 CTTTCA
66 CTTTCA
76986359 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76986424 CTTTCA
66 CTTTCA
76986430 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76986452 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:76986489 original size:71 final size:70
Alignment explanation
Indices: 76986288--76986485 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
76986278 CGATTTGTCT
* * * *
76986288 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76986353 CTTTCA
65 CTTTCA
* * * *
76986359 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76986424 CTTTCA
65 CTTTCA
* *
76986430 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
76986486 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:76993949 original size:71 final size:71
Alignment explanation
Indices: 76993865--76994028 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76993855 CGATTTGTCT
76993865 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76993930 CTTTCA
66 CTTTCA
76993936 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76994001 CTTTCA
66 CTTTCA
76994007 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76994029 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:76994066 original size:71 final size:70
Alignment explanation
Indices: 76993865--76994062 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
76993855 CGATTTGTCT
* * * *
76993865 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76993930 CTTTCA
65 CTTTCA
* * * *
76993936 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76994001 CTTTCA
65 CTTTCA
* *
76994007 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
76994063 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:76996152 original size:47 final size:47
Alignment explanation
Indices: 76996083--76996687 Score: 1003
Period size: 47 Copynumber: 12.9 Consensus size: 47
76996073 TAAGATCGAA
*
76996083 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
76996130 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
76996177 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
*
76996224 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
* *
76996271 TAGCCAAGGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
76996318 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
*
76996365 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTCATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
76996412 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
*
76996459 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
* *
76996506 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTTATAAGGCCGAA
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
* * * * * *
76996553 TGGCCAATGTGATGAATGTGAAAGTGTATATATGAGAAAAGACCTAA
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
* * * * * *
76996600 TGGCCGATGTGGTGGATGTGAAGGTGTATATATGTGATAAGGCCGAA
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
* * *
76996647 TGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAG
76996688 TCCCGAAGGG
Statistics
Matches: 527, Mismatches: 31, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 527 1.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (47 bp):
TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
Found at i:76999954 original size:42 final size:41
Alignment explanation
Indices: 76999901--77000381 Score: 342
Period size: 42 Copynumber: 11.4 Consensus size: 41
76999891 GAAGTCGATG
* * * *
76999901 GTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGCACTCGGAT
1 GTGCGGGAGCCTCG-GCACCATCGGCACCTTGGCGCTTGGAT
** * * *
76999943 GTGCGGGAGCCTCGAGCAGTATCAGCACCTTGGTGCCTCGGAT
1 GTGCGGGAGCCTCG-GCACCATCGGCACCTTGGCG-CTTGGAT
* * * * *
76999986 GTGTGGGAGCCTAGAGTAGCATCGGCACCTTGGGGCTTTGGAT
1 GTGCGGGAGCCTCG-GCACCATCGGCACCTTGGCGC-TTGGAT
* * * * *
77000029 GTGCAGGAGCCTCGGACACCATCGGAAAACTAGGTC-CTTGGTT
1 GTGCGGGAGCCTCGG-CACCATCGG-CACCTTGG-CGCTTGGAT
*** * * *
77000072 GT-CAAAAAGTCTCGGGCACCATTGGCACCTTGGTGCTTGGAT
1 GTGC-GGGAGCCTC-GGCACCATCGGCACCTTGGCGCTTGGAT
* * *
77000114 GTGCGGGAACCTCGAGCACCATCGGCACCTTGGTGCTTAGAT
1 GTGCGGGAGCCTCG-GCACCATCGGCACCTTGGCGCTTGGAT
* *
77000156 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGAC-CTTGG-T
1 GTGCGGGAGCCTCGGCACCATCGGC-ACCTTGG-CGCTTGGAT
* * *
77000197 CGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
1 -GTGCGGGAGCCTC-GGCACCATCGGC-ACCTTGGCGCTTGGAT
** *
77000240 CGTGCAAGAGCCTCGGCACCATCGGCACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGCACCATCGGCACCTTGGCGCTTGGAT
* *
77000282 GTGCTGGAGCCTCGGACACCATCGGCACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGG-CACCATCGGCACCTTGGCGCTTGGAT
* * * * * **
77000324 GTACGGGAACCTCGGACACCATTGGCAACCTAGGCCCTTGGCC
1 GTGCGGGAGCCTCGG-CACCATCGGC-ACCTTGGCGCTTGGAT
77000367 GTGCGGGAGCCTCGG
1 GTGCGGGAGCCTCGG
77000382 GGACCATCAG
Statistics
Matches: 359, Mismatches: 62, Indels: 35
0.79 0.14 0.08
Matches are distributed among these distances:
41 37 0.10
42 170 0.47
43 144 0.40
44 8 0.02
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (41 bp):
GTGCGGGAGCCTCGGCACCATCGGCACCTTGGCGCTTGGAT
Found at i:77000196 original size:126 final size:127
Alignment explanation
Indices: 76999967--77000308 Score: 390
Period size: 126 Copynumber: 2.7 Consensus size: 127
76999957 AGCAGTATCA
* * * * * *
76999967 GCACCTTGGTGCCTCGGATGTGTGGGAGCCTAGAGTAGCATCGGCACCTTGGGGCTTTGGATGTG
1 GCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGC-TTGGATGTG
* * * * *
77000032 C-AGGAGCCTCGGACACCATCGGAAAACTAGGTCCTTGGTTGT-CAAAAAGTCTCGGGCACCATT
64 CGA-GAGCCTCGGACACCATCGGCAAACTAGGACCTTGGTCGTGC-AAAAGCCTCGGGCACCATC
77000095 G
127 G
* *
77000096 GCACCTTGGTGCTTGGATGTGCGGGAACCTCGAGCACCATCGGCACCTTGGTGCTTAGATGTGCG
1 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCG
* **
77000161 AGAGCCTCGG-CACCATCGGCAACCTAGGACCTTGGTCGTGCAGGAGCCTCGGGCACCATCG
66 AGAGCCTCGGACACCATCGGCAAACTAGGACCTTGGTCGTGCAAAAGCCTCGGGCACCATCG
* ** **
77000222 GCAACCTAGGCCCTTGG-TCGTGCAAGAGCCTCG-GCACCATCGGCACCTTGGTGCTTGGATGTG
1 GC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTG
77000285 CTG-GAGCCTCGGACACCATCGGCA
64 C-GAGAGCCTCGGACACCATCGGCA
77000309 CCTTGGTGCT
Statistics
Matches: 184, Mismatches: 23, Indels: 14
0.83 0.10 0.06
Matches are distributed among these distances:
126 83 0.45
127 53 0.29
128 37 0.20
129 11 0.06
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.21
Consensus pattern (127 bp):
GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCG
AGAGCCTCGGACACCATCGGCAAACTAGGACCTTGGTCGTGCAAAAGCCTCGGGCACCATCG
Found at i:77000321 original size:126 final size:123
Alignment explanation
Indices: 77000005--77000381 Score: 418
Period size: 126 Copynumber: 3.0 Consensus size: 123
76999995 CCTAGAGTAG
* * *
77000005 CATCGGCACCTTGGGGCTTTGGATGTGCAGGAGCCTCGGACACCATCGGAAAACTAGGTCCTTGG
1 CATCGGCACCTTGGTGC-TTGGATGTGC-GGAGCCTCGGACACCATCGG-CACCTAGGTCCTTGG
** * * ** *
77000070 TTGTCAAAAAGTCTCGGGCACCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAACCTCGAGCAC
63 -TGTC-AGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG-GCAC
* *
77000133 CATCGGCACCTTGGTGCTTAGATGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGACCTTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCG-GAGCCTCGGACACCATCGGC-ACCTAGGTCCTTGGT
* **
77000197 CGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGCAC
64 -GT-CAGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCAC
* *
77000259 CATCGGCACCTTGGTGCTTGGATGTGCTGGAGCCTCGGACACCATCGGCACCTTGGTGCTTGGAT
1 CATCGGCACCTTGGTGCTTGGATGTGC-GGAGCCTCGGACACCATCGGCACCTAGGTCCTTGG-T
* * * *
77000324 GTACGGGAACCTCGGACACCATTGGCAACCTAGGCCCTTGGCCGTGCGGGAGCCTCGG
64 GT-CAGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
77000382 GGACCATCAG
Statistics
Matches: 213, Mismatches: 27, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
125 1 0.00
126 143 0.67
127 53 0.25
128 16 0.08
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (123 bp):
CATCGGCACCTTGGTGCTTGGATGTGCGGAGCCTCGGACACCATCGGCACCTAGGTCCTTGGTGT
CAGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCAC
Found at i:77000378 original size:169 final size:169
Alignment explanation
Indices: 76999908--77000401 Score: 519
Period size: 169 Copynumber: 2.9 Consensus size: 169
76999898 ATGGTGCGAG
* * ** * * ** *
76999908 AGCCTCGAGCAGCATCGGCACCTTGGCACTCGGATGTGCGGGAGCCTCGAGCAGTATCAGCACCT
1 AGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAACCTCGAGCACCATCGGCACCT
** ** * * * * * * * * **
76999973 TGGTGCCTCGGATGTGTGGGAGCCTAGAGTAGCATCGGC-ACCTTGGGGCTTTGGATGTGCAGGA
66 TGGTG-CTTAGATGTACGAGAACCTCG-GCACCATCGGCAACC-TAGGACCTTGGCCGTGCAGGA
* * * * *
77000037 GCCTCGGACACCATCGGAAAACTAGGTCCTTGGTTGTCAAAA
128 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTCAAAA
* *
77000079 AGTCTCGGGCACCATTGGCACCTTGGTGCTTGGATGTGCGGGAACCTCGAGCACCATCGGCACCT
1 AGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAACCTCGAGCACCATCGGCACCT
* * *
77000144 TGGTGCTTAGATGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGACCTTGGTCGTGCAGGAGCC
66 TGGTGCTTAGATGTACGAGAACCTCGGCACCATCGGCAACCTAGGACCTTGGCCGTGCAGGAGCC
*
77000209 TCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC-AAG
131 TCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT-CAAAA
* *
77000248 AGCCTC-GGCACCATCGGCACCTTGGTGCTTGGATGTGCTGGAGCCTCG-GACACCATCGGCACC
1 AGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAACCTCGAG-CACCATCGGCACC
* * * * *
77000311 TTGGTGCTTGGATGTACGGGAACCTCGGACACCATTGGCAACCTAGGCCCTTGGCCGTGCGGGAG
65 TTGGTGCTTAGATGTACGAGAACCTCGG-CACCATCGGCAACCTAGGACCTTGGCCGTGCAGGAG
* *
77000376 CCTCGGGGACCATCAGCAACCTAGGC
129 CCTCGGGCACCATCGGCAACCTAGGC
77000402 ACGTCTTTCT
Statistics
Matches: 276, Mismatches: 43, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
167 1 0.00
168 76 0.28
169 120 0.43
170 20 0.07
171 59 0.21
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (169 bp):
AGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAACCTCGAGCACCATCGGCACCT
TGGTGCTTAGATGTACGAGAACCTCGGCACCATCGGCAACCTAGGACCTTGGCCGTGCAGGAGCC
TCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTCAAAA
Found at i:77003599 original size:30 final size:30
Alignment explanation
Indices: 77003563--77003624 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
77003553 CCAAAGGGTA
77003563 TGAGAGGTCTTAGCATTCGTGATGTCCGAT
1 TGAGAGGTCTTAGCATTCGTGATGTCCGAT
77003593 TGAGAGGTCTTAGCATTCGTGATGTCCGAT
1 TGAGAGGTCTTAGCATTCGTGATGTCCGAT
77003623 TG
1 TG
77003625 TTCAACTTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.19, C:0.16, G:0.31, T:0.34
Consensus pattern (30 bp):
TGAGAGGTCTTAGCATTCGTGATGTCCGAT
Found at i:77008104 original size:54 final size:53
Alignment explanation
Indices: 77008022--77008127 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 53
77008012 AGCGTCCTGG
* *
77008022 TGGCTATGCCATAACTATCTGATCTGGTGGCTCTGCCACATATATCCGTTCTGA
1 TGGCTATGCCACAACTATCTGATCTGGTGACTCTGCCACAT-TATCCGTTCTGA
* * * * *
77008076 TGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTTCTG
1 TGGCTATGCCACAACTATCTGATCTGGTGACTCTGCCACATTATCCGTTCTG
77008128 GCAGTCATGC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 10 0.22
54 35 0.78
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (53 bp):
TGGCTATGCCACAACTATCTGATCTGGTGACTCTGCCACATTATCCGTTCTGA
Found at i:77008125 original size:26 final size:26
Alignment explanation
Indices: 77008018--77008128 Score: 123
Period size: 27 Copynumber: 4.2 Consensus size: 26
77008008 AGGAAGCGTC
* * * *
77008018 CTGGTGGCTATGCCATAACTATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGTT
*
77008045 CTGGTGGCTCTGCCACATATATCCGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
77008072 CTGATGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
77008099 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
77008125 CTGG
1 CTGG
77008129 CAGTCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 15 0.21
27 55 0.76
28 2 0.03
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:77014450 original size:25 final size:24
Alignment explanation
Indices: 77014411--77014462 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 24
77014401 GTAAGGAGGG
*
77014411 GATAAGGGAGAAGATTTAGGAGTT
1 GATAAGGGAGAAGATTTAGGAGCT
77014435 GATAAGGGGAGAAGATTTAGGAGCT
1 GATAA-GGGAGAAGATTTAGGAGCT
77014460 GAT
1 GAT
77014463 CAAAGAGCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.37, C:0.02, G:0.38, T:0.23
Consensus pattern (24 bp):
GATAAGGGAGAAGATTTAGGAGCT
Found at i:77015920 original size:27 final size:27
Alignment explanation
Indices: 77015871--77015981 Score: 118
Period size: 27 Copynumber: 4.1 Consensus size: 27
77015861 AGGAAGCATC
* * *
77015871 CTGGTGGCTATGCGACAACTATCTGAT
1 CTGGTGGCTCTGCCACAACTATCTGTT
77015898 CTGGTGGCTCTGCCACATA-TATCTGTT
1 CTGGTGGCTCTGCCACA-ACTATCTGTT
* * *
77015925 CTGGTGGCTCTGCCATAATTATCTGTC
1 CTGGTGGCTCTGCCACAACTATCTGTT
* * *
77015952 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAACTATCTGTT
77015978 CTGG
1 CTGG
77015982 AAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 14 0.19
27 58 0.79
28 1 0.01
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAACTATCTGTT
Found at i:77015956 original size:54 final size:53
Alignment explanation
Indices: 77015871--77015981 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 53
77015861 AGGAAGCATC
* *
77015871 CTGGTGGCTATGCGACAACTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAACTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * *
77015925 CTGGTGGCTCTGCCATAATTATCTG-TCCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAACTATCTGAT-CTGGTGACTCTGCCACATTATCTGTT
77015978 CTGG
1 CTGG
77015982 AAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 13 0.26
54 37 0.74
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAACTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:77021775 original size:182 final size:182
Alignment explanation
Indices: 77021467--77021999 Score: 721
Period size: 175 Copynumber: 3.0 Consensus size: 182
77021457 GTAAGAAGTT
* * * * * *
77021467 AGTTAAACACTTGGCCGTGCCACTCCCTCAGAAAATATGGCATAAC-GGGGCCGTGGTGGTGCGG
1 AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCTG
* *
77021531 GTGCGAGCTCCCAACTGTTGGTGGTCC-AGGCACTTGTTTAATTTTCTGCCGTGCCGTGCCATGC
66 GTGCGAGCTCCCAACTGTTGGTGGTCCGA-GCACTTGTTCAATTTTCTGCCGTGCCATGCCATGC
* *
77021595 CATACTTCATTCGGCTTCTTGTATTTGTTTTGGGCCAATAGAAAAAATTTCTA
130 CATACTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAATAGAAAAAATTTATA
* * *
77021648 GGTTAAACACTTGGCCGTGCTGCCCCCTCAGGAAACATGGCACAACGGGGGCCATGGTGGTGCTG
1 AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCTG
* *
77021713 GTGCGAGCTCCTAACTGTTGGTGGTCCGAGCACTTGTTCAATTTTCTGCCATGCCATGCCATGCC
66 GTGCGAGCTCCCAACTGTTGGTGGTCCGAGCACTTGTTCAATTTTCTGCCGTGCCATGCCATGCC
* * *
77021778 ATAC-T--TT---ATTCTTGTATTTTTTTTGGGCCAACAG-AAAAATTTATA
131 ATACTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAATAGAAAAAATTTATA
* *
77021823 AGTTAAACACTTGGCCGTACCGCCCCCTCAGGAAACATGGCACAATGGGGGCCGTGGTGGTG-TG
1 AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCT-
* * ** *
77021887 GGTACAAGCTCCCAACTGTTGGTGGTTTGAGCACTTGTTCAATTTTCTTCCGTGCCAT--CATGC
65 GGTGCGAGCTCCCAACTGTTGGTGGTCCGAGCACTTGTTCAATTTTCTGCCGTGCCATGCCATGC
* *
77021950 CATATTTCATTCGGCTTATTGTATTTCTTTTGGGCCAATAGAAAAAATTT
130 CATACTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAATAGAAAAAATTT
77022000 TCAGCTAAAA
Statistics
Matches: 308, Mismatches: 34, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
173 9 0.03
174 2 0.01
175 118 0.38
176 26 0.08
179 25 0.08
180 8 0.03
181 40 0.13
182 79 0.26
183 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (182 bp):
AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCTG
GTGCGAGCTCCCAACTGTTGGTGGTCCGAGCACTTGTTCAATTTTCTGCCGTGCCATGCCATGCC
ATACTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAATAGAAAAAATTTATA
Found at i:77023677 original size:15 final size:18
Alignment explanation
Indices: 77023644--77023681 Score: 55
Period size: 15 Copynumber: 2.3 Consensus size: 18
77023634 TTTGTTGCGT
77023644 TTTTGTTTTTGTCTCTTG
1 TTTTGTTTTTGTCTCTTG
77023662 TTTT-TTTTT-TCT-TTG
1 TTTTGTTTTTGTCTCTTG
77023677 TTTTG
1 TTTTG
77023682 CTAGGTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 7 0.37
16 3 0.16
17 5 0.26
18 4 0.21
ACGTcount: A:0.00, C:0.08, G:0.13, T:0.79
Consensus pattern (18 bp):
TTTTGTTTTTGTCTCTTG
Found at i:77024944 original size:20 final size:20
Alignment explanation
Indices: 77024919--77024958 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
77024909 TGGGAACCCT
77024919 GCGACAGTTCGTGATTTGAA
1 GCGACAGTTCGTGATTTGAA
77024939 GCGACAGTTCGTGATTTGAA
1 GCGACAGTTCGTGATTTGAA
77024959 CCAACTTCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (20 bp):
GCGACAGTTCGTGATTTGAA
Found at i:77029467 original size:42 final size:43
Alignment explanation
Indices: 77029416--77029693 Score: 185
Period size: 43 Copynumber: 6.6 Consensus size: 43
77029406 GTCGGTGGTC
*
77029416 CGAGAGCCTCGAGCAGCATCGACACCTTAGTG-CTCAGATGTG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCAGATGTG
* *
77029458 CGAGAGCCTCGAGCAGCATCGGTACCTTGGTGCCTCAGATGTG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCAGATGTG
* * * *
77029501 TGAGAGCCTCGAGCAGCATTGGCACCTTAGGGCCT-TGCATGTG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCAG-ATGTG
* * * * * *
77029544 CGGGAGCCTCG-GACACCATCGGCAAAC-TAG-GCCCTTAGTTGTC
1 CGAGAGCCTCGAG-CAGCATCGGC-ACCTTAGTG-CCTCAGATGTG
* * * * * ** *
77029587 CGAGAGCCTGGGGCACCATCGGCACCCTGGTG-CTTGGATATG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCAGATGTG
* * * * * ** *
77029629 CGGGAGCCTTGGGCACCATCGGCACCTTGGTG-CTTGGATGTA
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCAGATGTG
* *
77029671 CGAGATCCTCG-GCACCATCGGCA
1 CGAGAGCCTCGAGCAGCATCGGCA
77029694 ACCTAGGCTC
Statistics
Matches: 194, Mismatches: 33, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
41 12 0.06
42 85 0.44
43 92 0.47
44 5 0.03
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (43 bp):
CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCAGATGTG
Found at i:77029509 original size:43 final size:42
Alignment explanation
Indices: 77029416--77029693 Score: 179
Period size: 42 Copynumber: 6.6 Consensus size: 42
77029406 GTCGGTGGTC
*
77029416 CGAGAGCCTCGAGCAGCATCGACACCTTAGTGCTCAGATGTG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCTCAGATGTG
* *
77029458 CGAGAGCCTCGAGCAGCATCGGTACCTTGGTGCCTCAGATGTG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTG-CTCAGATGTG
* * * *
77029501 TGAGAGCCTCGAGCAGCATTGGCACCTTAGGGC-CTTGCATGTG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCTC-AG-ATGTG
* * * * * *
77029544 CGGGAGCCTCG-GACACCATCGGCAAAC-TAG-GCCCTTAGTTGTC
1 CGAGAGCCTCGAG-CAGCATCGGC-ACCTTAGTG--CTCAGATGTG
* * * * * ** *
77029587 CGAGAGCCTGGGGCACCATCGGCACCCTGGTGCTTGGATATG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCTCAGATGTG
* * * * * ** *
77029629 CGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTTGGATGTA
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCTCAGATGTG
* *
77029671 CGAGATCCTCG-GCACCATCGGCA
1 CGAGAGCCTCGAGCAGCATCGGCA
77029694 ACCTAGGCTC
Statistics
Matches: 191, Mismatches: 34, Indels: 23
0.77 0.14 0.09
Matches are distributed among these distances:
41 13 0.07
42 86 0.45
43 86 0.45
44 6 0.03
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (42 bp):
CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCTCAGATGTG
Found at i:77029734 original size:43 final size:43
Alignment explanation
Indices: 77029541--77031304 Score: 1429
Period size: 43 Copynumber: 41.5 Consensus size: 43
77029531 GGCCTTGCAT
* * * *
77029541 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTAGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * **
77029584 GTCCGAGAGCCTGGGGCACCATCGGCACCCT-GGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * **
77029626 ATGCGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
77029668 GTACGAGATCCTC-GGCACCATCGGCAACCTAGGCTCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
77029710 GTACAGGAGCCTCGGGCACCATCGGCAACCCAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
77029753 GTACGGGAGCCTCGGGTACCATTGGCAACCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
77029796 GTGCGGGAGCCTCGGGCACAATCAGG-AACCTAGACACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATC-GGCAACCTAGGCCCTTGGTC
* * * * * **
77029839 GTGCGAGAGCCTC-GACACCATTGG--TCCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * ***
77029879 GTGCGGGAGCCTCAGACACCATCGGC-ACCTCGTTACTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
77029921 GTGCGAGAGCCTCGGACACCATCGGCAACCTAGGCCTTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
77029964 GTACGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * ** *
77030007 ATGCGGGAACTTCGGGCACTATCGAAAACCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
77030050 GTGCGGGAGCCTTGGGCGCCATCTGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
77030093 GTAG-GAGAGCCTC-GGCACCGCCGGC-ACCTTGG-ACTTGGAT-
1 GT-GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
77030133 GTGCGGGAGCCTCAGACACCACCGG-TACCTTAGTG--CTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TC
**
77030175 GTATGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * **
77030218 GTGTGAGAGCCAC-GGCACCATCGAC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * ** * * * **
77030259 GTACGAGTTCCTCAGACACCATCGG-AACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
77030301 GTGCGGGAGCCTTGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
77030344 GTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
77030387 GTGCAGGAGCCTCTGGCACCATCGGCAACCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
77030430 GTACGGGAGCCTCGGGCACTATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
77030473 GTGTGGGAGCCTTGAGCACCATTGGCAACCTAGGCCATTGCTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * * * *
77030516 CTGCGGGAGCCTCGGGCACCATTAGTAATCTAGGCCCTTGATT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
77030559 GTGTGGGGGCCTCGGGCACCATCGGTAACC-AGGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GGCCCTTGGTC
* * *
77030602 GTGCGAGAGCCT-AGGCACCATCGGCAACC-AGGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GGCCCTTGGTC
* * * * **
77030644 GTGCGAGAGTCT-AGGCACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * ** * **
77030685 GTACAGGAGCCTCGTACACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
77030727 GTACGGAAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
77030770 GTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
77030813 GTGTGGAAGCCTTGGGCACCATCGGCAACATAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
77030856 GTGCTGGAGCCTCTGGCACCATCAGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** *
77030899 ATGCGGGAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
77030942 GTGCGGGAGCCTCGAGCACCATCGGTAGCCTAGGCCCTTGATA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
77030985 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * **
77031028 GTGCGAGAGCCTC-GGCACCATTGGC-ACATTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
77031069 GTGCGGGAGCCTCGGACACCATCGGC-CCCTTAGTG--CTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGGTC
* * *
77031111 GTGCGGGAGCCTCGGGCACTATCGGCAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * *
77031154 GTGTAGGAGCCTCGGGCATCATCGGCAACCTAGGCCATTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
77031197 GTGCGGGAGCCTCGGGCACCTTTGGC-ACCTTAGTG-CC-TGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TC
* * * *
77031239 GTGCGGGAACCTCGGTCACCATCAGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* **
77031282 ATGCTAGAGCCTCGGGCACCATC
1 GTGCGGGAGCCTCGGGCACCATC
77031305 AACACCTTGG
Statistics
Matches: 1401, Mismatches: 272, Indels: 96
0.79 0.15 0.05
Matches are distributed among these distances:
39 1 0.00
40 36 0.03
41 110 0.08
42 398 0.28
43 851 0.61
44 5 0.00
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.20
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:77031302 original size:426 final size:424
Alignment explanation
Indices: 77029504--77031305 Score: 1593
Period size: 426 Copynumber: 4.2 Consensus size: 424
77029494 AGATGTGTGA
* * * * *
77029504 GAGCCTCGAGCAGCATTGGC-ACCTTAGGGCCTTGCAT-GTGCGGGAGCCTCGGACACCATCGGC
1 GAGCCTCGGGCACCATCGGCAACC-TA-GGCCTTGGATCGTGCGGGAGCCTCGGGCACCATCGGC
* * * * * * * * **
77029567 AAACTAGGCCCTTAGTTGTCCGAGAGCCTGGGGCACCATCGGCACCCT-GGTGCTTGGAT-ATGC
64 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGG-TCATGC
* ** * *
77029630 GGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTACGAGATCCTCGGCACCATCGGC
128 GGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGCACCATCGGC
* * * * * *
77029693 AACCTAGGCTCTTGGTCGTACAGGAGCCTCGGGCACCATCGGCAACCCAGGCCCTTGATCGTACG
192 AACCTAGGCCCTTGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACG
* * * * * * * *
77029758 GGAGCCTCGGGTACCATTGGCAACCTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACAATCAGGA
256 AGAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATC-GGC
** * * * * *
77029823 ACC-TAGACACTTGG-TCGTGCGAGAGCCTC-GACACCATTGGTCCTTGGTGCTTGGATGTGCGG
319 ACCTTAG-TGCTTGGAT-GTACGAGAGCCTCGGACACCATCGGACCTTGGTGCCTGGATGTGCAG
* * ** *
77029885 GAGCCTCAGACACCATCGGC-ACCT-CGTTACTTGGAT-GTGCGA
382 GAGCCTCGGACACCATCGGCAACCTAGGCCA-TTGG-TCGTGCGG
* * * *
77029927 GAGCCTCGGACACCATCGGCAACCTAGGCCTTTGATCGTACGGGAGCCTCGGGCACCATCGGTAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAA
* * * * * * *
77029992 CCTAGGCCCTTGGTCATGCGGGAACTTCGGGCACTATC-GAAAACCTAGGCCCTTGATCGTGCGG
66 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAG-CAACCTAGGCCCTTGGTCATGCGG
* * **
77030056 GAGCCTTGGGCGCCATCTGCAACCTAGGCCCTTGGTCGTAG-GAGAGCCTCGGCACCGCCGGC-A
130 GAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTCGT-GCGAGAGCCTCGGCACCATCGGCAA
* * * * * * *
77030119 CCTTGG-ACTTGGATGTGCGGGAGCCTCAGACACCACCGG-TACCTTAGTG--CTTGGAT-GTAT
194 CCTAGGCCCTT-GATGTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTAC
* * * * *
77030179 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCCACGGCACCATCGACA
255 GAGAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCA
* ** * * *
77030244 CCTTGGTGCTTGGATGTACGAGTTCCTCAGACACCATCGGAACCTTGGTGCTTGGATGTGCGGGA
320 CCTTAGTGCTTGGATGTACGAGAGCCTCGGACACCATCGG-ACCTTGGTGCCTGGATGTGCAGGA
* * * *
77030309 GCCTTGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGG
384 GCCTCGGACACCATCGGCAACCTAGGCCATTGGTCGTGCGG
* * * *
77030350 GAGCCTCAGACACCATCGGCAACCTAGGCCCTT-GATCGTGCAGGAGCCTCTGGCACCATCGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCA
* * * * * *
77030414 ACCTAGGCCCTTGATCGTACGGGAGCCTCGGGCACTATCGGCAACCTAGGCCCTTGGTCGTGTGG
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCATGCGG
* * * * * * ** *
77030479 GAGCCTTGAGCACCATTGGCAACCTAGGCCATTGCTCCTGCGGGAGCCTCGGGCACCATTAGTAA
130 GAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAA
* * * * * *
77030544 TCTAGGCCCTTGATTGTGTGGGGGCCTCGGGCACCATCGGTAACC-AGGGCCTTTGGTCGTGCGA
194 CCTAGGCCCTTGA-TGTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GGCCCTTGGTCGTACGA
* * * * *
77030608 GAGCCT-AGGCACCATCGGCAACCA-GGGCCTTTGGTCGTGCGAGAGTCTAGGCACCATCGGCAC
257 GAGCCTCGGGCACCATCGGCAA-CATAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAC
* * * *
77030671 CTTGGTGCTTGGATGTAC-AGGAGCCTCGTACACCATCGGCACCTTGGTGCTTGGATGTAC-GGA
321 CTTAGTGCTTGGATGTACGA-GAGCCTCGGACACCATCGG-ACCTTGGTGCCTGGATGTGCAGG-
*
77030734 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
383 AGCCTCGGACACCATCGGCAACCTAGGCCATTGGTCGTGCGG
* * * *
77030776 GAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGTGGAAGCCTTGGGCACCATCGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCA
* * * * *
77030840 ACATAGGCCCTTGATCGTGCTGGAGCCTCTGGCACCATCAGTAACCTAGGCCCTTGGTCATGCGG
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCATGCGG
* * * * *
77030905 GAGCCTTAGGCACCATCGGCAACCTAGGCCCTTGGTTGTGCGGGAGCCTCGAGCACCATCGGTAG
130 GAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCAA
* *
77030970 CCTAGGCCCTTGATAGTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAG
194 CCTAGGCCCTTGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGAG
* * ** * *
77031035 AGCCTC-GGCACCATTGGC-ACATTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCCC
258 AGCCTCGGGCACCATCGGCAACATAGGCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGGCAC
* * * * * * ** * *
77031097 CTTAGTGCTTGGTTGTGCGGGAGCCTCGGGCACTATCGGCAACCTAGGCCCCTAG-TCGTGTAGG
321 CTTAGTGCTTGGATGTACGAGAGCCTCGGACACCATCGG--ACCTTGGTGCCTGGAT-GTGCAGG
* *
77031161 AGCCTCGGGCATCATCGGCAACCTAGGCCATTGGTCGTGCGG
383 AGCCTCGGACACCATCGGCAACCTAGGCCATTGGTCGTGCGG
* * * * * *
77031203 GAGCCTCGGGCACCTTTGGC-ACCTTAGTGCC-TGGAT-GTGCGGGAACCTCGGTCACCATCAGT
1 GAGCCTCGGGCACCATCGGCAACC-TAG-GCCTTGGATCGTGCGGGAGCCTCGGGCACCATCGGC
* **
77031265 AACCTAGGCCCTTGGTCATGCTAGAGCCTCGGGCACCATCA
64 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCA
77031306 ACACCTTGGT
Statistics
Matches: 1126, Mismatches: 204, Indels: 95
0.79 0.14 0.07
Matches are distributed among these distances:
420 19 0.02
421 21 0.02
422 104 0.09
423 264 0.23
424 57 0.05
425 64 0.06
426 502 0.45
427 92 0.08
428 3 0.00
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.20
Consensus pattern (424 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAA
CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCATGCGGG
AGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACC
TAGGCCCTTGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGC
CTCGGGCACCATCGGCAACATAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCACCTTAG
TGCTTGGATGTACGAGAGCCTCGGACACCATCGGACCTTGGTGCCTGGATGTGCAGGAGCCTCGG
ACACCATCGGCAACCTAGGCCATTGGTCGTGCGG
Found at i:77059425 original size:58 final size:59
Alignment explanation
Indices: 77059333--77059447 Score: 178
Period size: 58 Copynumber: 2.0 Consensus size: 59
77059323 TCTTTCCCCA
* * *
77059333 ATCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAGTGAACC
1 ATCCCAAAAGGTAGAATTCAGATACCATTACATGTTCGGTACCCAACAATGAATGAACC
* *
77059392 ATCCC-AAAGGTAGAATTCGGATACCATTGCATGTTCGGTACCCAACAATGAATGAA
1 ATCCCAAAAGGTAGAATTCAGATACCATTACATGTTCGGTACCCAACAATGAATGAA
77059448 TCGTCCCTGT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
58 46 0.90
59 5 0.10
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (59 bp):
ATCCCAAAAGGTAGAATTCAGATACCATTACATGTTCGGTACCCAACAATGAATGAACC
Found at i:77065122 original size:30 final size:30
Alignment explanation
Indices: 77065067--77065229 Score: 249
Period size: 30 Copynumber: 5.5 Consensus size: 30
77065057 ATAGTGAATC
77065067 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
77065096 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
77065126 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
77065156 CGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* * * * *
77065185 CGCACACTTAGTGCTGTACAATTTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTTTCAGCT
77065216 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77065230 CAATCTTGTC
Statistics
Matches: 124, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
29 45 0.36
30 60 0.48
31 19 0.15
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.36
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:77066984 original size:85 final size:85
Alignment explanation
Indices: 77066829--77067197 Score: 318
Period size: 85 Copynumber: 4.4 Consensus size: 85
77066819 GGCTGTCACA
* * * *
77066829 ACCTAGGCCCTT-GGTCGCGCGAGAGCCTCGGG-ACCATCGGC-ACCTATGCCCTTGGTTGTGCG
1 ACCTAGGCCCTTAGAT-GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
77066891 GCAGCCTCGGCCACCATCGGC
65 GGAGCCTCGGGCACCATCGGC
* * *
77066912 ACCTAGGCCCTTAGATGTGCTAGAGACTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
1 ACCTAGGCCCTTAGATGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
77066977 GAGCCTCGGGCACCATCGGC
66 GAGCCTCGGGCACCATCGGC
* * ** * * ** * *
77066997 ACTTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCTTTGGTCGTGCGG
1 ACCTAGGCCCTTAGATGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
77067062 GAGCCTCGGGCACCATCGGC
66 GAGCCTCGGGCACCATCGGC
* * * * * * * ** * **
77067082 ACCTTGGTGCCTTGGATGTAC-AGGAGCCTCGAGCAGCATTGGC-ATTTTGGTGCTTGGAT-GTG
1 ACCTAGG-CCCTTAGATGTGCGA-GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTG
*
77067144 CGGGAGCCTCGGACACCATCGGC
63 CGGGAGCCTCGGGCACCATCGGC
* * * * *
77067167 AACCTAGGACGTTGGATGTGCGGGTGCCTCG
1 -ACCTAGGCCCTTAGATGTGCGAGAGCCTCG
77067198 AGCAGCAGGG
Statistics
Matches: 235, Mismatches: 43, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
83 25 0.11
84 11 0.05
85 165 0.70
86 34 0.14
ACGTcount: A:0.15, C:0.31, G:0.33, T:0.20
Consensus pattern (85 bp):
ACCTAGGCCCTTAGATGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
GAGCCTCGGGCACCATCGGC
Found at i:77066985 original size:43 final size:43
Alignment explanation
Indices: 77066827--77067197 Score: 296
Period size: 43 Copynumber: 8.7 Consensus size: 43
77066817 TGGGCTGTCA
* *
77066827 CAACCTAGGCCCTTGGTCGCGCGAGAGCCTCGGG-ACCATCGG
1 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* * * *
77066869 C-ACCTATGCCCTTGGTTGTGCGGCAGCCTCGGCCACCATCGG
1 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* ** *
77066911 C-ACCTAGGCCCTTAGAT-GTGCTAGAGACTCGGGCACCATCGG
1 CAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGG
*
77066953 CAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGG
1 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* * ** **
77066996 C-ACTTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGG
1 CAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
* *
77067038 CAACCTCGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
1 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* * * * * * *
77067081 C-ACCTTGGTGCCTTGGAT-GTACAGGAGCCTCGAGCAGCATTGG
1 CAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
** * ** *
77067124 C-ATTTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGG
1 CAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
* * *
77067166 CAACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
1 CAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
77067198 AGCAGCAGGG
Statistics
Matches: 262, Mismatches: 57, Indels: 19
0.78 0.17 0.06
Matches are distributed among these distances:
41 26 0.10
42 111 0.42
43 124 0.47
44 1 0.00
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.20
Consensus pattern (43 bp):
CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
Found at i:77067131 original size:128 final size:127
Alignment explanation
Indices: 77066827--77067197 Score: 376
Period size: 128 Copynumber: 2.9 Consensus size: 127
77066817 TGGGCTGTCA
* ** * * ** *
77066827 CAACCTAGGCCCTTGGTCGCGC-GAGAGCCTCG-GGACCATCGGCACCTAT-GCCCTTGGTTGTG
1 CAACCTAGGCCCCTGGTCGTACAG-GAGCCTCGAGCACCATCGGCA-CTTTGGTGCTTGGATGTG
* * * * ** *
77066889 CGGCAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTAGATGTGCTAGAGACTCGGGCACCATCGG
64 CGGGAGCCTCGGACACCATCGGCAACCTAGG-CCTTTGGTGTGCGGGAGCCTCGGGCACCATCGG
* * *
77066953 CAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTGCTTGGATGTGCG
1 CAACCTAGGCCCCTGGTCGTACAGGAGCCTCGAGCACCATCGGCACTTTGGTGCTTGGATGTGCG
* *
77067018 GGAGCCTCGAACACCATCGGCAACCTCGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
66 GGAGCCTCGGACACCATCGGCAACCTAGGCCTTTGGT-GTGCGGGAGCCTCGGGCACCATCGG
* * * * * *
77067081 C-ACCTTGGTGCCTTGGAT-GTACAGGAGCCTCGAGCAGCATTGGCATTTTGGTGCTTGGATGTG
1 CAACCTAGG-CCCCTGG-TCGTACAGGAGCCTCGAGCACCATCGGCACTTTGGTGCTTGGATGTG
* * *
77067144 CGGGAGCCTCGGACACCATCGGCAACCTAGGACGTTGGATGTGCGGGTGCCTCG
64 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCTTTGG-TGTGCGGGAGCCTCG
77067198 AGCAGCAGGG
Statistics
Matches: 207, Mismatches: 30, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
126 31 0.15
127 54 0.26
128 120 0.58
129 2 0.01
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.20
Consensus pattern (127 bp):
CAACCTAGGCCCCTGGTCGTACAGGAGCCTCGAGCACCATCGGCACTTTGGTGCTTGGATGTGCG
GGAGCCTCGGACACCATCGGCAACCTAGGCCTTTGGTGTGCGGGAGCCTCGGGCACCATCGG
Found at i:77067211 original size:128 final size:128
Alignment explanation
Indices: 77066976--77067228 Score: 346
Period size: 128 Copynumber: 2.0 Consensus size: 128
77066966 TGGTCGTGCG
*
77066976 GGAGCCTCGGGCACCATCGGCACTTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAA
1 GGAGCCTCGAGCACCATCGGCACTTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAA
* * * * * * *
77067041 CCTCGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTACA
66 CCTAGGACGTTGGTCGTGCGGGAGCCTCGAGCACCAGCGGCACCCTGGTGCCTCGGATGTACA
* * * *
77067104 GGAGCCTCGAGCAGCATTGGCATTTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAA
1 GGAGCCTCGAGCACCATCGGCACTTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAA
* * * *
77067169 CCTAGGACGTTGGAT-GTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGATGT
66 CCTAGGACGTTGG-TCGTGCGGGAGCCTCGAGCACCAGCGGCACCCTGGTGCCTCGGATGT
77067229 GCGGGCTAAA
Statistics
Matches: 108, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
128 107 0.99
129 1 0.01
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (128 bp):
GGAGCCTCGAGCACCATCGGCACTTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAA
CCTAGGACGTTGGTCGTGCGGGAGCCTCGAGCACCAGCGGCACCCTGGTGCCTCGGATGTACA
Found at i:77067218 original size:85 final size:83
Alignment explanation
Indices: 77066879--77067233 Score: 284
Period size: 85 Copynumber: 4.2 Consensus size: 83
77066869 CACCTATGCC
* * * * * * ** * *
77066879 CTTGGTTGTGCGGCAGCCTCGGCCACCATCGGCACCTAGGCCCTTAGATGTGCTAGAGACTCGGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTTGG-CGTTGGATGTGCGGGAGCCTCGAG
* **
77066944 CACCATCGGCAACCTAGGCC
65 CAGCATCGGCAACCT-GGTG
* * *
77066964 CCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTGCTTGGATGTGCGGGAGCCTCGA
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGCG-TTGGATGTGCGGGAGCCTCGA
* * *
77067028 ACACCATCGGCAACCTCGG-C
64 GCAGCATCGGCAACCT-GGTG
* * *
77067048 CTTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTACAGGAGCCTC
1 C-TTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTT-G-GCGTTGGATGTGCGGGAGCCTC
* ***
77067112 GAGCAGCATTGGCATTTTGGTG
62 GAGCAGCATCGGCAACCTGGTG
* * *
77067134 CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTTGGATGTGCGGGTGCCTCGA
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGG-CGTTGGATGTGCGGGAGCCTCGA
** *
77067199 GCAGCAGGGGCACCCTGGTGG
64 GCAGCATCGGCAACCTGGT-G
*
77067220 CTCGGATGTGCGGG
1 CTTGGATGTGCGGG
77067234 CTAAAGAAAA
Statistics
Matches: 221, Mismatches: 39, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
84 4 0.02
85 166 0.75
86 50 0.23
87 1 0.00
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (83 bp):
CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGCGTTGGATGTGCGGGAGCCTCGAGC
AGCATCGGCAACCTGGTG
Found at i:77067346 original size:13 final size:13
Alignment explanation
Indices: 77067328--77067358 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
77067318 AGATCCACTG
77067328 CCCCCGACGTGGC
1 CCCCCGACGTGGC
77067341 CCCCCGACGTGGC
1 CCCCCGACGTGGC
77067354 CCCCC
1 CCCCC
77067359 TCGAACCCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.61, G:0.26, T:0.06
Consensus pattern (13 bp):
CCCCCGACGTGGC
Found at i:77072563 original size:24 final size:24
Alignment explanation
Indices: 77072526--77072572 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
77072516 GGTTAGGTTC
* * *
77072526 CCGGCGGTGCTCCGACGATCCATT
1 CCGGCGATGATCCGACGAACCATT
*
77072550 CCGGCGATGATCCGGCGAACCAT
1 CCGGCGATGATCCGACGAACCAT
77072573 CCTGGGATAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.17, C:0.36, G:0.30, T:0.17
Consensus pattern (24 bp):
CCGGCGATGATCCGACGAACCATT
Found at i:77072719 original size:58 final size:59
Alignment explanation
Indices: 77072611--77072729 Score: 152
Period size: 58 Copynumber: 2.0 Consensus size: 59
77072601 CCCTCCCCAA
* * *
77072611 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGATACCTAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGAGACCCAACAATGAATGAATCG
* * * *
77072670 TCCC-AAAGGTAGGATTCGGATACCGTTGCATG-TCTGGGACCCAACAATGACTGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTC-GAGACCCAACAATGAATGAATCG
77072728 TC
1 TC
77072730 TCTGTCCCTC
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 2 0.04
58 46 0.88
59 4 0.08
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGAGACCCAACAATGAATGAATCG
Found at i:77075063 original size:24 final size:24
Alignment explanation
Indices: 77075036--77075112 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
77075026 CCGGTTAGGT
*
77075036 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
*
77075060 TCCCGGCGGTGCTCCGACGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
*
77075084 TCCTGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
77075108 TCCCG
1 TCCCG
77075113 AATATCGAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.09, C:0.42, G:0.34, T:0.16
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:77075381 original size:41 final size:42
Alignment explanation
Indices: 77075290--77076048 Score: 863
Period size: 42 Copynumber: 18.5 Consensus size: 42
77075280 GAGCATCCTG
* * * * * * *
77075290 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAACCTAGGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * *
77075332 GTTTGTCGTGCGGGAGCCTCGGGCACCATCGGC-CCTAGCCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
77075373 CTTGGTCGTGCGGGAGCCTC--GAACCATCGGCAACCTAGGCT
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * *
77075414 CTTGGTCGTACGAGAGCCTC-GGCACCATCGGAACCTAGTCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
77075455 CTTGGTCGTGC--GAGCCTCGGGCACCATCGGAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
77075495 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
77075537 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
77075578 C-TGGTC-TGTAGGAG-CTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
77075618 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
**
77075660 CTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACCTAGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
77075701 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
77075744 CCTGGTCGTGC-GGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
77075784 CTTGGTCGTGCGGGAGCCTC-GGCACCATCGG-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
77075824 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* **
77075867 C-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CTCGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
77075907 CTTGGAT-GTGCGGGAGCCTC-GACACCATCGGCACCTTGG-C
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * **
77075947 CTT-AT-GTGCGGGAGCCTC-GGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * * **
77075986 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
77076028 CTTGGAT-GTGCGGGAGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
77076049 ACACCATGAC
Statistics
Matches: 636, Mismatches: 51, Indels: 60
0.85 0.07 0.08
Matches are distributed among these distances:
38 48 0.08
39 33 0.05
40 106 0.17
41 188 0.30
42 214 0.34
43 47 0.07
ACGTcount: A:0.14, C:0.33, G:0.34, T:0.19
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:77075542 original size:123 final size:125
Alignment explanation
Indices: 77075290--77076055 Score: 834
Period size: 123 Copynumber: 6.2 Consensus size: 125
77075280 GAGCATCCTG
* * * * * * *
77075290 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGG
1 CTTGGTCGTGCGGGAGCCTCGG-CACCATCGGAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGG
* * *
77075355 CACCATCGGC--CCTAGCCCCTTGGTCGTGCGGGAGCCTC-GAACCATCGGCAACCTAGGCT
64 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCC
* * *
77075414 CTTGGTCGTACGAGAGCCTCGGCACCATCGGAACCTAGTCCCTTGGTCGTGC-GAGCCTCGGGCA
1 CTTGGTCGTGCGGGAGCCTCGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGCA
77075478 CCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGG-C
66 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCC
* * *
77075537 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGG-CC-TGGTC-TGTAGGAG-CTCGGC
1 CTTGGTCGTGCGGGAGCCTCGG-CACCATCGGAACCTAGGCCCTTGGTCGTG-CGGAGCCTCGGG
*
77075598 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCC
64 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCC
* **
77075660 CTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTC-GGCACCATCGGAACCTAGGCCCTTGG-TCGTGC-GGAGCCTCGG
* *
77075723 GCACCATCGGCAACCTAGGCCCCTGGTCGTGC-GGAGCCTCGGGACCATCGGC-ACCTAGGCC
63 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCC
77075784 CTTGGTCGTGCGGGAGCCTCGGCACCATCGG-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGG
1 CTTGGTCGTGCGGGAGCCTCGGCACCATCGGAACCTAGGCCCTTGG-TCGTGC-GGAGCCTCGGG
* **
77075847 CACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A-CTCGGTG
64 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCC
* * * *
77075907 CTTGGAT-GTGCGGGAGCCTCGACACCATCGGCACCTTGG-CCTT-AT-GTGCGGGAGCCTC-GG
1 CTTGG-TCGTGCGGGAGCCTCGGCACCATCGGAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGG
* ** * * * **
77075967 CACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTG
64 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCC
*
77076028 CTTGGAT-GTGCGGGAGCCTCGACACCAT
1 CTTGG-TCGTGCGGGAGCCTCGGCACCAT
77076056 GACCTAGGAT
Statistics
Matches: 575, Mismatches: 41, Indels: 55
0.86 0.06 0.08
Matches are distributed among these distances:
119 8 0.01
120 38 0.07
121 70 0.12
122 87 0.15
123 200 0.35
124 115 0.20
125 22 0.04
126 35 0.06
ACGTcount: A:0.15, C:0.33, G:0.34, T:0.19
Consensus pattern (125 bp):
CTTGGTCGTGCGGGAGCCTCGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGCA
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCC
Found at i:77075731 original size:206 final size:208
Alignment explanation
Indices: 77075288--77076006 Score: 933
Period size: 206 Copynumber: 3.5 Consensus size: 208
77075278 GGGAGCATCC
* * * * * *
77075288 TGCTTGGACGTGCTGGAGCCTTGGACGCCATCGG-AACCTAGGACGTTTGTCGTGCGGGAGCCTC
1 TGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTC
* * *
77075352 GGGCACCATCGGC-CCTAGCCCCTTGGTCGTGCGGGAGCCTC-GAACCATCGGCAACCTAGGCTC
66 -GGCACCATCGGCACCTAG-GCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCC
* * *
77075415 TTGGTCGTACGAGAGCCTC-GGCACCATCGGAACCTAGTCCCTTGGTCGTGC-GAGCCTCGGGCA
129 TTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGCA
*
77075478 CCATCGGAACCTAGG
194 CCATCGGCACCTAGG
** *
77075493 CCCTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAGCCT
1 TGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCT
**
77075556 CGGCCACCATCGGCACCTAGGCC-TGGTC-TGTAGGAG-CTCGGCCACCATCGGCAACCTAGGCC
65 CGG-CACCATCGGCACCTAGGCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCC
77075618 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGC
128 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGC
77075683 ACCATCGGCACCTAGG
193 ACCATCGGCACCTAGG
* * *
77075699 TGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGC-GGAGCCTC
1 TGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTC
*
77075763 GGGACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGG--ACCTAGGCCCT
66 GGCACCATCGGCACCTAGG-CCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCT
*
77075826 TGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGGG
130 TGG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGG
*
77075889 CACCATCGGCA-CTCGG
192 CACCATCGGCACCTAGG
* *
77075905 TGCTTGGATGTGCGGGAGCCTC-GACACCATCGGC-ACCTTGG-CCTT-AT-GTGCGGGAGCCTC
1 TGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTC
* *
77075965 GGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
66 GGCACCATCGGCACCTAGG-CCTTGG-TCGTGCGGGAGCCTCG
77076007 AGCAGCATTG
Statistics
Matches: 460, Mismatches: 35, Indels: 41
0.86 0.07 0.08
Matches are distributed among these distances:
201 4 0.01
202 48 0.10
203 11 0.02
204 50 0.11
205 114 0.25
206 163 0.35
207 50 0.11
208 15 0.03
209 5 0.01
ACGTcount: A:0.14, C:0.33, G:0.34, T:0.18
Consensus pattern (208 bp):
TGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTC
GGCACCATCGGCACCTAGGCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTT
GGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGCACC
ATCGGCACCTAGG
Found at i:77076114 original size:121 final size:119
Alignment explanation
Indices: 77075502--77076120 Score: 374
Period size: 123 Copynumber: 5.1 Consensus size: 119
77075492 GCCCTTGGTC
* * *
77075502 GTGCGGGAGCCTCG-GCCACCATCGGCAACCTAGG-CCTTGG-TCGTGCGGGAGCCTCGGCCACC
1 GTGCGGGAGCCTCGAG-CACCATCGGC-A-CTCGGTGCTTGGAT-GTGCGGGAGCCTC-GACACC
* ** * ** * * ** *
77075564 ATCGGCACCTAGGCCTGGTCTGTAGGAG-CTCGGCCACCATCGGCAACCTAGGCCCTTGG-T
61 ATC-GCACCTAGGCATTATGTGCGGGAGCCTCGG-CACCAGCGGCACCCT-GGTGCTCGGAT
* * * ** *
77075624 CGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGC-GGAGCCTCGGGCACCA
1 -GTGCGGGAGCCTCGAGCACCATCGGCA-CTCGGTGCTTGGAT-GTGCGGGAGCCTC-GACACCA
* * * *
77075687 TCGGCACCTAGGTGC-TTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCCTGG-
62 TC-GCACCTA-G-GCATT--ATGTGCGGGAGCCTC-GGCACCAGCGGCACCCT-GGTGCTC-GGA
77075749 T
119 T
* * ** *
77075750 CGTGC-GGAGCCTCG-GGACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGCACCAT
1 -GTGCGGGAGCCTCGAGCACCATCGGCA-CTCGGTGCTTGGAT-GTGCGGGAGCCTCGACACCAT
* * * * * *
77075812 CGGACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTGG-T
63 CGCACCTAGG-CATT--ATGTGCGGGAGCCTC-GGCACCAGCGGCACCCTGGTGCTC-GGAT
*
77075872 CGTGCGGGAGCCTCGGGCACCATCGGCACTCGGTGCTTGGATGTGCGGGAGCCTCGACACCATCG
1 -GTGCGGGAGCCTCGAGCACCATCGGCACTCGGTGCTTGGATGTGCGGGAGCCTCGACACCATC-
* * * * *
77075937 GCACCTTGGCCTTATGTGCGGGAGCCTCGGCACCATCGGCACCTTGGTGCTTGGAT
64 GCACCTAGGCATTATGTGCGGGAGCCTCGGCACCAGCGGCACCCTGGTGCTCGGAT
* * *
77075993 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACACCAT-G
1 GTGCGGGAGCCTCGAGCACCATCGGCA-CTCGGTGCTTGGATGTGCGGGAGCCTCGACACCATCG
* * *
77076057 -ACCTAGG-ATGTGATGTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGAT
65 CACCTAGGCAT-T-ATGTGCGGGAGCCTCG-GCACCAGCGGCACCCTGGT-GCTCGGAT
77076114 GTGCGGG
1 GTGCGGG
77076121 CTAAAGAAAA
Statistics
Matches: 435, Mismatches: 38, Indels: 48
0.83 0.07 0.09
Matches are distributed among these distances:
117 1 0.00
118 7 0.02
119 16 0.04
120 57 0.13
121 67 0.15
122 47 0.11
123 123 0.28
124 61 0.14
125 25 0.06
126 29 0.07
127 2 0.00
ACGTcount: A:0.14, C:0.32, G:0.36, T:0.18
Consensus pattern (119 bp):
GTGCGGGAGCCTCGAGCACCATCGGCACTCGGTGCTTGGATGTGCGGGAGCCTCGACACCATCGC
ACCTAGGCATTATGTGCGGGAGCCTCGGCACCAGCGGCACCCTGGTGCTCGGAT
Found at i:77076118 original size:162 final size:160
Alignment explanation
Indices: 77075339--77076120 Score: 515
Period size: 165 Copynumber: 4.8 Consensus size: 160
77075329 GACGTTTGTC
* *
77075339 GTGCGGGAGCCTCGGGCACCATCGGC--CCTAGCCCCTTGGTCGTGCGGGAGCCTC-GA-ACCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGGACACCAT
* * * * * * * *
77075400 CGGCAACCTAGGCT-CTTGG-TCGTACGAGAGCCTCGGCACCATCGGAACCTAGTCCCTTGG-TC
65 CGAC-A-CTAGG-TGC-TGGAT-GTGCGGGAGCCTCGACACCAGCGGCACCTTG-GCC--GGAT-
77075462 GTGC--GAGCCTCGGGCACCATCGGAACCTAGGCCCTTGG-T
121 GTGCGGGAGCCTC-GGCACCATCGG-ACCTAGGCCCTTGGAT
* *
77075501 CGTGCGGGAGCCTCG-GCCACCATCGGCAACCTAGGCCTTGGTCGTGCGGGAGCCTCGGCCACCA
1 -GTGCGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGACACCA
* * * ** * * *
77075565 TCGGCACCTAGG-CCTGG-TCTGTAGGAG-CTCGGCCACCATCGGCAACCTAGGCCCTTGG-TCG
64 TCGACA-CTAGGTGCTGGATGTGCGGGAGCCTC-GACACCAGCGGC-ACCTTGG-CC--GGAT-G
*
77075626 TGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-T
122 TGCGGGAGCCTC-GGCACCATCGG-ACCTAGGCCCTTGGAT
* * * *
77075666 CGTGC-GGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACC
1 -GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGG-CCCTGG-TCGTGCGGGAGCCTCGGACACC
* ** ** * *
77075728 ATCGGCAACCTAGGCCCCTGG-TCGTGC-GGAGCCTCGGGACCATCGGCACCTAGGCCCTTGG-T
63 ATCGAC-A-CTAGG-TGCTGGAT-GTGCGGGAGCCTCGACACCAGCGGCACCTTGG-CC--GGAT
77075790 CGTGCGGGAGCCTCGGCACCATCGGACCTAGGCCCTTGGAT
121 -GTGCGGGAGCCTCGGCACCATCGGACCTAGGCCCTTGGAT
* *
77075831 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGACACCATC
* * * **
77075896 GGCACTCGGTGCTTGGATGTGCGGGAGCCTCGACACCATCGGCACCTTGGCCTTATGTGCGGGAG
66 GACACTAGGTGC-TGGATGTGCGGGAGCCTCGACACCAGCGGCACCTTGGCCGGATGTGCGGGAG
* **
77075961 CCTCGGCACCATCGGCACCTTGGTGCTTGGAT
130 CCTCGGCACCATCGG-ACCTAGGCCCTTGGAT
* * * * *
77075993 GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC-GACACCA
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGG-CCCTGG-TCGTGCGGGAGCCTCGGACACCA
* * *
77076055 T-GAC-CTAGGATG-T-GATGTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGATGT
64 TCGACACTAGG-TGCTGGATGTGCGGGAGCCTCGA-CACCAGCGGCA-CCT--TGGC-CGGATGT
77076116 GCGGG
123 GCGGG
77076121 CTAAAGAAAA
Statistics
Matches: 536, Mismatches: 47, Indels: 73
0.82 0.07 0.11
Matches are distributed among these distances:
157 17 0.03
158 9 0.02
159 7 0.01
160 4 0.01
161 44 0.08
162 80 0.15
163 67 0.12
164 113 0.21
165 126 0.24
166 44 0.08
167 20 0.04
168 5 0.01
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (160 bp):
GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGACACCATC
GACACTAGGTGCTGGATGTGCGGGAGCCTCGACACCAGCGGCACCTTGGCCGGATGTGCGGGAGC
CTCGGCACCATCGGACCTAGGCCCTTGGAT
Found at i:77081842 original size:29 final size:29
Alignment explanation
Indices: 77081809--77081882 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
77081799 GTGACGAGAT
77081809 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
77081838 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
77081867 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77081883 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:77081898 original size:29 final size:28
Alignment explanation
Indices: 77081866--77081940 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
77081856 CTGGAAATAT
* *
77081866 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
77081895 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
77081923 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
77081941 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:77081909 original size:58 final size:57
Alignment explanation
Indices: 77081809--77081940 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
77081799 GTGACGAGAT
* * * * * *
77081809 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
77081867 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
77081924 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
77081941 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:77089718 original size:29 final size:29
Alignment explanation
Indices: 77089685--77089758 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
77089675 GTGACGAGAT
77089685 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
77089714 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
77089743 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77089759 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:77089774 original size:29 final size:28
Alignment explanation
Indices: 77089742--77089816 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
77089732 CTGGAAATAT
* *
77089742 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
77089771 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
77089799 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
77089817 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:77089785 original size:58 final size:57
Alignment explanation
Indices: 77089685--77089816 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
77089675 GTGACGAGAT
* * * * * *
77089685 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
77089743 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
77089800 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
77089817 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:77095081 original size:40 final size:39
Alignment explanation
Indices: 77095036--77095165 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
77095026 CGGAATACAA
77095036 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
77095076 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
77095116 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
77095156 CCGGATATAA
1 CCGGATATAA
77095166 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:77105513 original size:40 final size:39
Alignment explanation
Indices: 77105449--77105614 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 39
77105439 TCTTCAGAAT
* **
77105449 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTC
* * *** *
77105488 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
77105528 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
* * *
77105568 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
77105608 TTAGCCC
1 TTAGCCC
77105615 AGGTATCATT
Statistics
Matches: 105, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 99 0.94
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
Found at i:77105597 original size:80 final size:80
Alignment explanation
Indices: 77105449--77105614 Score: 210
Period size: 80 Copynumber: 2.1 Consensus size: 80
77105439 TCTTCAGAAT
* * ** *
77105449 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCAC
*
77105513 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGAC
** * *
77105528 TTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCA
1 TTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCA
*
77105592 TAAATGCCTTCGGGAC
65 CAAATGCCTTCGGGAC
77105608 TTAGCCC
1 TTAGCCC
77105615 AGGTATCATT
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
79 4 0.05
80 68 0.92
81 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCAC
AAATGCCTTCGGGAC
Found at i:77108119 original size:96 final size:96
Alignment explanation
Indices: 77107935--77108398 Score: 432
Period size: 96 Copynumber: 4.8 Consensus size: 96
77107925 TTATATCATT
* * * * ** *
77107935 CCAAAAATGGTCTTACACTAGCTCACATGTCGA-GGTCGATGCCATGTCCCAGATATGGTCTTAC
1 CCAAACATGGTCTTACACTGGCTCTCATATC-ATGACCGATGCCATGTCCCAGACATGGTCTTAC
* * * * *
77107999 ACTAGCTCTCGTCTCATTGTCGATGCAATGTC
65 ACTGGCTCTCATATCATTGCCGATGCCATGTC
* * *
77108031 CCAGACATGGTCTTACACTGGCTCTCATGAT-GTGACCGATGCCATGTCCCAAACATGGTCTTAC
1 CCAAACATGGTCTTACACTGGCTCTCAT-ATCATGACCGATGCCATGTCCCAGACATGGTCTTAC
* * * *
77108095 ACTAGCGCACATATCAATGCCGATGCCATGTC
65 ACTGGCTCTCATATCATTGCCGATGCCATGTC
* * * * * * * *
77108127 CCAGACATGGTCTTACACTGGCTCTCACAACATCACCAATGCCATGTTCCAAATATGGTCTTACA
1 CCAAACATGGTCTTACACTGGCTCTCATATCATGACCGATGCCATGTCCCAGACATGGTCTTACA
** * ** *
77108192 CTGGCTCTCATATTGTGGCTAATGTCATGTC
66 CTGGCTCTCATATCATTGCCGATGCCATGTC
* * * * * *
77108223 CCAAACATGGTCTTACATTAGCACACATATCCATG-CCGATGCCATCTCCTAGACATGGTCTTAC
1 CCAAACATGGTCTTACACTGGCTCTCATAT-CATGACCGATGCCATGTCCCAGACATGGTCTTAC
* * *
77108287 ACTGGCTCTCACAACATTGCCGATGCCATGTT
65 ACTGGCTCTCATATCATTGCCGATGCCATGTC
* * * *
77108319 CCAAACATGGTCTTACATTGGCTCTCATATCGT-AGTCAATGCCATGTCCCAGACATGGTCTTAC
1 CCAAACATGGTCTTACACTGGCTCTCATATCATGA-CCGATGCCATGTCCCAGACATGGTCTTAC
* *
77108383 ACTGGCACACATATCA
65 ACTGGCTCTCATATCA
77108399 CCCAAATGTC
Statistics
Matches: 293, Mismatches: 69, Indels: 12
0.78 0.18 0.03
Matches are distributed among these distances:
95 3 0.01
96 286 0.98
97 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (96 bp):
CCAAACATGGTCTTACACTGGCTCTCATATCATGACCGATGCCATGTCCCAGACATGGTCTTACA
CTGGCTCTCATATCATTGCCGATGCCATGTC
Found at i:77108195 original size:144 final size:143
Alignment explanation
Indices: 77107935--77108398 Score: 590
Period size: 144 Copynumber: 3.2 Consensus size: 143
77107925 TTATATCATT
* * * * * * *
77107935 CCAAAAATGGTCTTACACTAGCTCACATGTCGAGGTCGATGCCATGTCCCAGATATGGTCTTACA
1 CCAAACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACA
* * * * * * *
77108000 CTAGCTCTCGTC-TCATTGTCGATGCAATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGT
66 CTGGCTCTC-ACAACATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATGT
*
77108064 GACCGATGCCATGTC
129 GACCAATGCCATGTC
*
77108079 CCAAACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACA
1 CCAAACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACA
** * *
77108144 CTGGCTCTCACAACATCACCAATGCCATGTTCCAAATATGGTCTTACACTGGCTCTCATATTGTG
66 CTGGCTCTCACAACATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATA-TGTG
* * *
77108209 GCTAATGTCATGTC
130 ACCAATGCCATGTC
* * * *
77108223 CCAAACATGGTCTTACATTAGCACACATATCCATGCCGATGCCATCTCCTAGACATGGTCTTACA
1 CCAAACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACA
*
77108288 CTGGCTCTCACAACATTGCCGATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCATATCGT-
66 CTGGCTCTCACAACATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAT-GTG
*
77108352 AGTCAATGCCATGTC
130 A-CCAATGCCATGTC
* *
77108367 CCAGACATGGTCTTACACTGGCACACATATCA
1 CCAAACATGGTCTTACACTAGCACACATATCA
77108399 CCCAAATGTC
Statistics
Matches: 276, Mismatches: 40, Indels: 8
0.85 0.12 0.02
Matches are distributed among these distances:
143 3 0.01
144 273 0.99
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (143 bp):
CCAAACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACA
CTGGCTCTCACAACATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATGTGA
CCAATGCCATGTC
Found at i:77108396 original size:48 final size:48
Alignment explanation
Indices: 77107941--77108397 Score: 386
Period size: 48 Copynumber: 9.5 Consensus size: 48
77107931 CATTCCAAAA
* * * * *
77107941 ATGGTCTTACACTAGCTCACATGTCG-AGGTCGATGCCATGTCCCAGAT
1 ATGGTCTTACACTGGCTCTCATATCGTA-GCCGATGCCATGTCCCAGAC
* * * * * * *
77107989 ATGGTCTTACACTAGCTCTCGTCTCATTGTCGATGCAATGTCCCAGAC
1 ATGGTCTTACACTGGCTCTCATATCGTAGCCGATGCCATGTCCCAGAC
*
77108037 ATGGTCTTACACTGGCTCTCATGAT-GT-GACCGATGCCATGTCCCAAAC
1 ATGGTCTTACACTGGCTCTCAT-ATCGTAG-CCGATGCCATGTCCCAGAC
* * * *
77108085 ATGGTCTTACACTAGCGCACATATC-AATGCCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTGGCTCTCATATCGTA-GCCGATGCCATGTCCCAGAC
* * * * * * *
77108133 ATGGTCTTACACTGGCTCTCACAACATCA-CCAATGCCATGTTCCAAAT
1 ATGGTCTTACACTGGCTCTCATATCGT-AGCCGATGCCATGTCCCAGAC
* * ** * *
77108181 ATGGTCTTACACTGGCTCTCATATTGTGGCTAATGTCATGTCCCAAAC
1 ATGGTCTTACACTGGCTCTCATATCGTAGCCGATGCCATGTCCCAGAC
* * * * * * *
77108229 ATGGTCTTACATTAGCACACATATC-CATGCCGATGCCATCTCCTAGAC
1 ATGGTCTTACACTGGCTCTCATATCGTA-GCCGATGCCATGTCCCAGAC
* * * * * *
77108277 ATGGTCTTACACTGGCTCTCACAACATTGCCGATGCCATGTTCCAAAC
1 ATGGTCTTACACTGGCTCTCATATCGTAGCCGATGCCATGTCCCAGAC
* * *
77108325 ATGGTCTTACATTGGCTCTCATATCGTAGTCAATGCCATGTCCCAGAC
1 ATGGTCTTACACTGGCTCTCATATCGTAGCCGATGCCATGTCCCAGAC
* *
77108373 ATGGTCTTACACTGGCACACATATC
1 ATGGTCTTACACTGGCTCTCATATC
77108398 ACCCAAATGT
Statistics
Matches: 323, Mismatches: 75, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
47 3 0.01
48 317 0.98
49 2 0.01
50 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGGTCTTACACTGGCTCTCATATCGTAGCCGATGCCATGTCCCAGAC
Found at i:77113905 original size:40 final size:40
Alignment explanation
Indices: 77113846--77114053 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
77113836 CAATTGAATG
* * * * *
77113846 ATATCCGGGATAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
77113886 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
77113926 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
77113966 AAATGCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
77114006 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
77114046 ATATCCGG
1 ATATCCGG
77114054 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
39 2 0.01
40 134 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:77113996 original size:80 final size:80
Alignment explanation
Indices: 77113891--77114038 Score: 210
Period size: 80 Copynumber: 1.9 Consensus size: 80
77113881 TAATTATATC
* *
77113891 CGGGTTAAGACCCGAAGGCCATTGTGCTAGT-GACCACATCCGGGCTAAGACCCGAAGGCATTCG
1 CGGGCTAAGACCCGAAGGCCATTGTGCAAGTCGACC-CATCCGGGCTAAGACCCGAAGGCATTCG
77113955 TGCAAGTTGTTAAATG
65 TGCAAGTTGTTAAATG
* ** *
77113971 CGGGCTAATACCCGAAGG-CATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATTCG
1 CGGGCTAAGACCCGAAGGCCA-TTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATTCG
77114035 TGCA
65 TGCA
77114039 TGTGGTTATA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
79 2 0.03
80 56 0.93
81 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (80 bp):
CGGGCTAAGACCCGAAGGCCATTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATTCGT
GCAAGTTGTTAAATG
Found at i:77124479 original size:21 final size:21
Alignment explanation
Indices: 77124455--77124496 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
77124445 TCATCAGATC
*
77124455 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
77124476 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
77124497 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:77126720 original size:30 final size:30
Alignment explanation
Indices: 77126667--77126726 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
77126657 ATTTAATAAG
* *
77126667 AACTTTGGCAAAATTACATTTTTGTCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* * *
77126697 AACTTTTGCATAATTACGCTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
77126727 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:77128272 original size:46 final size:47
Alignment explanation
Indices: 77128213--77128480 Score: 194
Period size: 47 Copynumber: 5.7 Consensus size: 47
77128203 GATTTCTTAT
* **
77128213 GTGCCAGTGTAAGATATGTTTGGGACATGCATCGGCCACA-TTATGA
1 GTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACAGAGATGA
* ** * *
77128259 GTGCCAGTATAAGACCACATCTGGGACATGGCATCGG-CATAGAGATGA
1 GTGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCACAGAGATGA
* * *
77128307 GTGCCAGTGTAAGAGATGTTTAGGACATGCATCGGCCTC-GATGATGA
1 GTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACAGA-GATGA
* * * * * * *
77128354 -TAGCTAGTGTAAGACGTGTCTAGGACACGCATCGGCTA-AGAG-T-T
1 GT-GCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACAGAGATGA
* * *
77128398 GTGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTC-GATGATG-
1 GTGCCAGTGTAAGACATGTTTGGGACAT-GCATCGGCCACAGA-GATGA
*
77128445 CTAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
1 GT-GCCAGTGTAAGA-CATGTTTGGGACAT-GCATC
77128481 AGCAACTTAT
Statistics
Matches: 175, Mismatches: 32, Indels: 27
0.75 0.14 0.12
Matches are distributed among these distances:
44 23 0.13
45 12 0.07
46 25 0.14
47 61 0.35
48 35 0.20
49 19 0.11
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (47 bp):
GTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACAGAGATGA
Found at i:77128380 original size:94 final size:93
Alignment explanation
Indices: 77128213--77128480 Score: 303
Period size: 94 Copynumber: 2.9 Consensus size: 93
77128203 GATTTCTTAT
* * * *
77128213 GTGCCAGTGTAAGATATGTTTGGGACATGCATCGGCCAC-ATTATGAGT-GCCAGTATAAGACCA
1 GTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGATGATGA-TAGCCAGTGTAAGACCA
**
77128276 CATCTGGGACATGGCATCGGC-ATAGAGATGA
65 TGTCTGGGACATGGCATCGGCTA-AGAG-T-A
* * * *
77128307 GTGCCAGTGTAAGAGATGTTTAGGACATGCATCGGCCTCGATGATGATAGCTAGTGTAAGA-CGT
1 GTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGACCAT
* * *
77128371 GTCTAGGACA-CGCATCGGCTAAGAGTT
66 GTCTGGGACATGGCATCGGCTAAGAGTA
* * *
77128398 GTGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGATGATGCTAGCCAGTGTAAGACCA
1 GTGCCAGTGTAAGACATGTTTGGGACAT-GCATCGGCCTCGATGATGATAGCCAGTGTAAGACCA
*
77128463 TGTTTGGGACATGGCATC
65 TGTCTGGGACATGGCATC
77128481 AGCAACTTAT
Statistics
Matches: 146, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
91 24 0.16
92 32 0.22
93 22 0.15
94 52 0.36
95 16 0.11
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (93 bp):
GTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGACCAT
GTCTGGGACATGGCATCGGCTAAGAGTA
Done.