Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 258 of 770
Found at i:77453592 original size:29 final size:30
Alignment explanation
Indices: 77453559--77453615 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
77453549 AAATTGATTT
*
77453559 TCAAA-CCTAGGGGTAAAATGGTCATTTTG
1 TCAAAGCCTAGGGGCAAAATGGTCATTTTG
*
77453588 TCAAAGTCTAGGGGCAAAATGGTCATTT
1 TCAAAGCCTAGGGGCAAAATGGTCATTT
77453616 CACATTGTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (30 bp):
TCAAAGCCTAGGGGCAAAATGGTCATTTTG
Found at i:77454048 original size:46 final size:46
Alignment explanation
Indices: 77453946--77454119 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
77453936 ACATTATCAG
* *
77453946 AGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCATTGAGAC-TA
1 AGCCAGTGTAAG-ACATGTCTGGGACAT-GCATCGGCCTCGAGACGTA
* * *
77453993 GTGCTAGTGTAAGACATGTCTGGGACATGCTTCGGCCTCGAGACGTA
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
*
77454040 AGCCAGTGTAAGACATGTCTAGGACATGCATCGG-CTACGAGACGT-
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTA
*
77454085 -GTCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
77454120 TACAAATATG
Statistics
Matches: 111, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
44 11 0.10
45 15 0.14
46 58 0.52
47 17 0.15
48 10 0.09
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
Found at i:77456777 original size:91 final size:92
Alignment explanation
Indices: 77456648--77456815 Score: 286
Period size: 91 Copynumber: 1.8 Consensus size: 92
77456638 GCCCCTAAGT
*
77456648 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGA-TCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
77456712 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* *
77456739 GAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77456803 CGAGTTCGGATGC
65 CGAGTTCGGATGC
77456816 TCAACCATCC
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
90 20 0.28
91 30 0.42
92 22 0.31
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77456795 original size:46 final size:45
Alignment explanation
Indices: 77456645--77456812 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
77456635 CCCGCCCCTA
* *
77456645 AGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
*
77456689 AAGTGAACTCGGA-TCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT
*
77456736 CA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
77456780 AGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 A-GTGAACTCGGACTCAACTCAACGAGTTCGGA
77456813 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 7, Indels: 25
0.76 0.05 0.19
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 3 0.03
44 18 0.17
45 20 0.19
46 47 0.46
47 2 0.02
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:77457269 original size:30 final size:29
Alignment explanation
Indices: 77457235--77457293 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
77457225 ATTTAATACG
77457235 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTT-CCCCTA
* * *
77457265 AACTTTTGCATAATTACACTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTCCCCTA
77457294 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTCCCCTA
Found at i:77463128 original size:46 final size:46
Alignment explanation
Indices: 77463061--77463232 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
77463051 AACCCGCCCC
*
77463061 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
77463107 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
77463155 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
77463200 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
77463233 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 60 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:77463173 original size:93 final size:93
Alignment explanation
Indices: 77463066--77463236 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
77463056 GCCCCTAAGT
* *
77463066 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77463131 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
77463159 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77463224 CGAGTTCGGATGC
66 CGAGTTCGGATGC
77463237 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77469739 original size:27 final size:28
Alignment explanation
Indices: 77469683--77469752 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
77469673 AAATTTGTAC
77469683 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
77469711 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
77469738 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
77469753 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:77469763 original size:27 final size:27
Alignment explanation
Indices: 77469683--77469764 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
77469673 AAATTTGTAC
* *
77469683 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
77469711 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
77469738 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
77469765 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:77477537 original size:27 final size:28
Alignment explanation
Indices: 77477481--77477550 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
77477471 AAATTTGTAC
77477481 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
77477509 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
77477536 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
77477551 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:77477561 original size:27 final size:27
Alignment explanation
Indices: 77477481--77477562 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
77477471 AAATTTGTAC
* *
77477481 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
77477509 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
77477536 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
77477563 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:77481593 original size:46 final size:44
Alignment explanation
Indices: 77481529--77481648 Score: 152
Period size: 46 Copynumber: 2.7 Consensus size: 44
77481519 ATTGAGACGA
* * *
77481529 GTGCTAGTGTAAGACATGTCTGGGACATGCTTTGGCCT-CAAGAT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACAAGAT
*
77481573 GTAAGCCAGTGTAAGACATGTCTGAGACATGCATCGGCTACAAGAT
1 GT--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGAT
*
77481619 GTGTCAGTGTAAGACCATGTCTGGGACATG
1 GTGCCAGTGTAAGA-CATGTCTGGGACATG
77481649 GCATACCCCA
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
44 13 0.20
45 16 0.24
46 37 0.56
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (44 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGAT
Found at i:77483477 original size:34 final size:35
Alignment explanation
Indices: 77483428--77483506 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
77483418 GAATAGCACA
*
77483428 TTCAAAATAACTTCACATAAAACCGAATATAT-AAG
1 TTCAATATAACTTCACATAAAACCGAATA-ATCAAG
** *
77483463 TTCAATATAA-TTCACATGTAATCGAATAATCAAG
1 TTCAATATAACTTCACATAAAACCGAATAATCAAG
77483497 TTCAATATAA
1 TTCAATATAA
77483507 GCTTACCTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
33 2 0.05
34 28 0.72
35 9 0.23
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.30
Consensus pattern (35 bp):
TTCAATATAACTTCACATAAAACCGAATAATCAAG
Found at i:77489161 original size:30 final size:30
Alignment explanation
Indices: 77489127--77489186 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
77489117 ATTTAATACG
77489127 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
77489157 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
77489187 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:77495031 original size:46 final size:46
Alignment explanation
Indices: 77494964--77495135 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
77494954 AACCCGCCCC
*
77494964 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
77495010 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
77495058 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
77495103 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
77495136 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 60 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:77495076 original size:93 final size:93
Alignment explanation
Indices: 77494969--77495139 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
77494959 GCCCCTAAGT
* *
77494969 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77495034 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
77495062 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77495127 CGAGTTCGGATGC
66 CGAGTTCGGATGC
77495140 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77501648 original size:27 final size:28
Alignment explanation
Indices: 77501592--77501661 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
77501582 AAATTCGTAC
77501592 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
77501620 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
77501647 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
77501662 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:77501672 original size:27 final size:27
Alignment explanation
Indices: 77501592--77501673 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
77501582 AAATTCGTAC
* *
77501592 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
77501620 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
77501647 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
77501674 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:77505703 original size:46 final size:44
Alignment explanation
Indices: 77505639--77505758 Score: 152
Period size: 46 Copynumber: 2.7 Consensus size: 44
77505629 ATTGAGACGA
* * *
77505639 GTGCTAGTGTAAGACATGTCTGGGACATGCTTTGGCCT-CAAGAT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACAAGAT
*
77505683 GTAAGCCAGTGTAAGACATGTCTGAGACATGCATCGGCTACAAGAT
1 GT--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGAT
*
77505729 GTGTCAGTGTAAGACCATGTCTGGGACATG
1 GTGCCAGTGTAAGA-CATGTCTGGGACATG
77505759 GCATACCCCA
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
44 13 0.20
45 16 0.24
46 37 0.56
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (44 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGAT
Found at i:77507587 original size:34 final size:35
Alignment explanation
Indices: 77507538--77507616 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
77507528 GAATAGCACA
*
77507538 TTCAAAATAACTTCACATAAAACCGAATATAT-AAG
1 TTCAATATAACTTCACATAAAACCGAATA-ATCAAG
** *
77507573 TTCAATATAA-TTCACATGTAATCGAATAATCAAG
1 TTCAATATAACTTCACATAAAACCGAATAATCAAG
77507607 TTCAATATAA
1 TTCAATATAA
77507617 GCTTACCTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
33 2 0.05
34 28 0.72
35 9 0.23
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.30
Consensus pattern (35 bp):
TTCAATATAACTTCACATAAAACCGAATAATCAAG
Found at i:77514443 original size:28 final size:28
Alignment explanation
Indices: 77514403--77514474 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
77514393 AAAATTGTAC
* *
77514403 AGCACTAAGTGTGCGAGCTTG-ATTCTAT
1 AGCACTAAGTGTGCGAGC-TGAAATATAT
77514431 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTG-AAATATAT
77514460 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
77514475 GATTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 20 0.50
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTGAAATATAT
Found at i:77518530 original size:40 final size:40
Alignment explanation
Indices: 77518485--77518652 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
77518475 CGGAATATAA
77518485 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
77518525 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
77518565 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77518605 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
77518645 CCGGATAT
1 CCGGATAT
77518653 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77518635 original size:80 final size:80
Alignment explanation
Indices: 77518501--77518650 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
77518491 ATAATCACGT
*
77518501 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
77518565 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
77518581 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
77518644 CCCGGAT
64 CCCGGAT
77518651 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:77528602 original size:27 final size:27
Alignment explanation
Indices: 77528562--77528648 Score: 106
Period size: 27 Copynumber: 3.2 Consensus size: 27
77528552 AGGAAGCGTC
*
77528562 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
77528589 CTGGTGGCTCTGCCAC-ATATATTTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
77528616 CTGGTGGCTCTACCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
77528643 CTGGTG
1 CTGGTG
77528649 ACTTCGTCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
26 7 0.14
27 43 0.84
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:77531748 original size:19 final size:20
Alignment explanation
Indices: 77531724--77531765 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
77531714 CTCAAGAAAA
**
77531724 CAAAATAAA-AATTACAACC
1 CAAAATAAATAAGAACAACC
77531743 CAAAATAAATAAGAACAACC
1 CAAAATAAATAAGAACAACC
77531763 CAA
1 CAA
77531766 TGAATGGACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.64, C:0.21, G:0.02, T:0.12
Consensus pattern (20 bp):
CAAAATAAATAAGAACAACC
Found at i:77534421 original size:15 final size:15
Alignment explanation
Indices: 77534379--77534424 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
77534369 TATAAAATCC
77534379 ATTTAAAATAAA-AA
1 ATTTAAAATAAATAA
* *
77534393 CTTAACAAAT-AATAA
1 ATTTA-AAATAAATAA
77534408 ATTTAAAATAAATAA
1 ATTTAAAATAAATAA
77534423 AT
1 AT
77534425 GAAACACATG
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (15 bp):
ATTTAAAATAAATAA
Found at i:77534884 original size:61 final size:58
Alignment explanation
Indices: 77534812--77534943 Score: 192
Period size: 61 Copynumber: 2.2 Consensus size: 58
77534802 CCAAAAATAA
* * *
77534812 TATTATTTTAATAGTTTTAATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATTC
1 TATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATATTC
* *
77534873 TATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTG
1 TATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTC
77534931 TATTAATTTAATA
1 TATTAATTTAATA
77534944 TTAAAGTGAT
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
58 22 0.33
59 1 0.02
60 1 0.02
61 42 0.64
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.52
Consensus pattern (58 bp):
TATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTC
Found at i:77534956 original size:58 final size:60
Alignment explanation
Indices: 77534812--77534963 Score: 168
Period size: 61 Copynumber: 2.5 Consensus size: 60
77534802 CCAAAAATAA
* * * *
77534812 TATTATTTTAATAGTTTTAATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATTC
1 TATTAATTTAATA-ATTAAATATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTC
* * *
77534873 TATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAGTATTG
1 TATTAATTTAATA-ATTAAATATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTC
*
77534931 TATTAATTTAAT-ATTAAAGTGATTAAGTTTAAT
1 TATTAATTTAATAATTAAA-T-ATTAAATTTAAT
77534964 TATAATTAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
56 5 0.06
57 1 0.01
58 32 0.39
59 1 0.01
60 1 0.01
61 42 0.51
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (60 bp):
TATTAATTTAATAATTAAATATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTC
Found at i:77536736 original size:27 final size:27
Alignment explanation
Indices: 77536698--77536756 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
77536688 AAGTCTAGGG
77536698 TTTGACCCATGTTAGACATGTGTGTAT
1 TTTGACCCATGTTAGACATGTGTGTAT
77536725 TTTGACCCATGTTAGACATGTGTGTAT
1 TTTGACCCATGTTAGACATGTGTGTAT
77536752 TTTGA
1 TTTGA
77536757 TGGCTAATGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.42
Consensus pattern (27 bp):
TTTGACCCATGTTAGACATGTGTGTAT
Found at i:77539573 original size:46 final size:46
Alignment explanation
Indices: 77539494--77539629 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
77539484 TATATACACA
* * *
77539494 CATCTCATACATATCTCACA-TAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* *
77539539 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* *
77539585 TATCTCATACACATTTCACATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
77539630 ATACATGTTC
Statistics
Matches: 81, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
45 17 0.21
46 64 0.79
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:77539663 original size:47 final size:47
Alignment explanation
Indices: 77539600--77539844 Score: 328
Period size: 47 Copynumber: 5.1 Consensus size: 47
77539590 CATACACATT
* *
77539600 TCACATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
* *
77539647 TCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
* * **
77539694 TCACATTGGCCATTCAGCCTTATCACACATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
*
77539741 TCACATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTAT--CAC--ATATATACATGTTCACATTCA
* * ** *
77539792 TCACATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTTA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
77539839 TCACAT
1 TCACAT
77539845 AAAATCCTAA
Statistics
Matches: 176, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
47 132 0.75
49 5 0.03
51 39 0.22
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
Found at i:77543203 original size:23 final size:23
Alignment explanation
Indices: 77543176--77543250 Score: 80
Period size: 23 Copynumber: 3.2 Consensus size: 23
77543166 TGATATTTCC
77543176 TATCACATACAACATCTCATACT
1 TATCACATACAACATCTCATACT
* ** * *
77543199 TATCACCTATTACATGCT-ATTTCC
1 TATCACATACAACAT-CTCA-TACT
77543223 TATCACATACAACATCTCATACT
1 TATCACATACAACATCTCATACT
77543246 TATCA
1 TATCA
77543251 TCTTAAACCA
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
23 22 0.56
24 17 0.44
ACGTcount: A:0.35, C:0.29, G:0.01, T:0.35
Consensus pattern (23 bp):
TATCACATACAACATCTCATACT
Found at i:77543214 original size:47 final size:47
Alignment explanation
Indices: 77543160--77543250 Score: 173
Period size: 47 Copynumber: 1.9 Consensus size: 47
77543150 CCACACATCA
77543160 ATTACATGATATTTCCTATCACATACAACATCTCATACTTATCACCT
1 ATTACATGATATTTCCTATCACATACAACATCTCATACTTATCACCT
*
77543207 ATTACATGCTATTTCCTATCACATACAACATCTCATACTTATCA
1 ATTACATGATATTTCCTATCACATACAACATCTCATACTTATCA
77543251 TCTTAAACCA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.34, C:0.27, G:0.02, T:0.36
Consensus pattern (47 bp):
ATTACATGATATTTCCTATCACATACAACATCTCATACTTATCACCT
Found at i:77556249 original size:47 final size:47
Alignment explanation
Indices: 77556189--77556382 Score: 309
Period size: 47 Copynumber: 4.1 Consensus size: 47
77556179 GGCCTTGCCT
* * *
77556189 CTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCGTAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
* *
77556236 CTTTTGATCACTGGGGCATAATCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
77556283 CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCC
*
77556331 C-TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
77556377 CTTTTG
1 CTTTTG
77556383 CACTTCCTCC
Statistics
Matches: 134, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
46 22 0.16
47 90 0.67
48 22 0.16
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (47 bp):
CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:77556261 original size:24 final size:24
Alignment explanation
Indices: 77556189--77556381 Score: 295
Period size: 23 Copynumber: 8.2 Consensus size: 24
77556179 GGCCTTGCCT
*
77556189 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
77556213 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* * *
77556236 CTTTTGATCACTGGGGCATAATCC
1 CTTTTAATAACTGGGGCATAAGCC
77556260 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
77556283 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
77556307 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
77556331 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
77556354 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
77556377 CTTTT
1 CTTTT
77556382 GCACTTCCTC
Statistics
Matches: 155, Mismatches: 11, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
23 86 0.55
24 69 0.45
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:77556455 original size:20 final size:20
Alignment explanation
Indices: 77556427--77556477 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
77556417 GCATTTATGA
*
77556427 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
77556447 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
77556467 ACATATCATGT
1 ACATATCATGT
77556478 TTATCAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:77556541 original size:24 final size:25
Alignment explanation
Indices: 77556514--77556560 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
77556504 ATATATAAAC
* *
77556514 CCTAGGGGTATAA-GGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
77556538 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
77556561 CACGTTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:77560092 original size:72 final size:72
Alignment explanation
Indices: 77560016--77560162 Score: 276
Period size: 72 Copynumber: 2.0 Consensus size: 72
77560006 GGACTTGGAG
77560016 TAAGAGAAATTTTAGTGTTTTAAGAAAATGACATTTTGGTCATTTGGTAATTAAATGAATTAAAA
1 TAAGAGAAATTTTAGTGTTTTAAGAAAATGACATTTTGGTCATTTGGTAATTAAATGAATTAAAA
77560081 AGCCAAA
66 AGCCAAA
*
77560088 TAAGAGAAATTTTGGTGTTTTAAGAAAATGACATTTTGGTCATTTGGTAATTAAATGAATTAAAA
1 TAAGAGAAATTTTAGTGTTTTAAGAAAATGACATTTTGGTCATTTGGTAATTAAATGAATTAAAA
*
77560153 ATCCAAA
66 AGCCAAA
77560160 TAA
1 TAA
77560163 AGCCAAAATT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.43, C:0.05, G:0.16, T:0.35
Consensus pattern (72 bp):
TAAGAGAAATTTTAGTGTTTTAAGAAAATGACATTTTGGTCATTTGGTAATTAAATGAATTAAAA
AGCCAAA
Found at i:77561217 original size:21 final size:21
Alignment explanation
Indices: 77561191--77561245 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
77561181 GTGTGAAGGG
77561191 AGGCACATGGCCGTGT-GACC
1 AGGCACATGGCCGTGTGGACC
77561211 AAGGCACAT-GCACGTGTGGACC
1 -AGGCACATGGC-CGTGTGGACC
*
77561233 AGGGACATGGCCG
1 AGGCACATGGCCG
77561246 CGGGAACAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 2 0.07
21 22 0.73
22 6 0.20
ACGTcount: A:0.24, C:0.27, G:0.36, T:0.13
Consensus pattern (21 bp):
AGGCACATGGCCGTGTGGACC
Found at i:77569569 original size:11 final size:11
Alignment explanation
Indices: 77569553--77569579 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
77569543 GAACTTGAAA
77569553 AACGGGGTTAG
1 AACGGGGTTAG
77569564 AACGGGGTTAG
1 AACGGGGTTAG
77569575 AACGG
1 AACGG
77569580 ACTTACAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.11, G:0.44, T:0.15
Consensus pattern (11 bp):
AACGGGGTTAG
Found at i:77580758 original size:40 final size:40
Alignment explanation
Indices: 77580703--77580912 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
77580693 AACATTGGAA
77580703 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77580743 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77580783 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
77580823 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
77580862 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
77580903 CTATATCCGG
1 ATATATCCGG
77580913 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:77588894 original size:40 final size:40
Alignment explanation
Indices: 77588839--77589008 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
77588829 AACATTGGAA
77588839 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77588879 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
77588919 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
77588958 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
77588999 CTATATCCGG
1 ATATATCCGG
77589009 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:77591184 original size:28 final size:28
Alignment explanation
Indices: 77591142--77591216 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
77591132 ATCTTCGATG
77591142 TCTTGCACACTAAGTGCCATACTCAATA
1 TCTTGCACACTAAGTGCCATACTCAATA
* * *
77591170 TCTTGAACACCAAGTGCCATTCTCAATA
1 TCTTGCACACTAAGTGCCATACTCAATA
77591198 T-TTCGCACACTAAGTGCCA
1 TCTT-GCACACTAAGTGCCA
77591217 CACATATATA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
27 2 0.05
28 39 0.95
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (28 bp):
TCTTGCACACTAAGTGCCATACTCAATA
Found at i:77596982 original size:40 final size:40
Alignment explanation
Indices: 77596932--77597099 Score: 295
Period size: 40 Copynumber: 4.2 Consensus size: 40
77596922 ACCTTCGGTT
*
77596932 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
77596971 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
77597011 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
77597051 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
77597091 TTAGCCCGG
1 TTAGCCCGG
77597100 TTATCATCCG
Statistics
Matches: 124, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
39 5 0.04
40 119 0.96
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:77598948 original size:40 final size:40
Alignment explanation
Indices: 77598758--77598963 Score: 216
Period size: 40 Copynumber: 5.2 Consensus size: 40
77598748 ATTGAATGAT
* * * * ** **
77598758 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTAA
* * * * *
77598798 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTAA
77598838 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTAA
* *
77598878 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTAG
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTAA
* * * * *
77598918 ATCCGGGCTAAGACCTGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTAA
77598958 ATCCGG
1 ATCCGG
77598964 TTGTATTCCG
Statistics
Matches: 141, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
40 139 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTAA
Found at i:77602519 original size:93 final size:93
Alignment explanation
Indices: 77602407--77602578 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
77602397 GCCCATAAGT
*
77602407 GAACTCGGACTCAACTCAACGAGCTCGGGCGT-TCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGAC-TCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
77602471 ATGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
77602500 GAACTCGGACTCAACTCAACGAGTTCGGACTCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACTCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77602565 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
77602579 CAAATATCCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 1 0.01
93 74 0.99
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACTCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77602574 original size:46 final size:46
Alignment explanation
Indices: 77602399--77602574 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
77602389 TGTAACCCGC
* *
77602399 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGT-TCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAC-TCTCGCAT
* *
77602445 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA-TGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACT--CTCG---CAT
* *
77602495 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACTCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTCTCGCAT
77602538 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77602575 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
43 3 0.03
44 2 0.02
45 2 0.02
46 66 0.60
47 30 0.27
48 3 0.03
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTCTCGCAT
Found at i:77607789 original size:37 final size:37
Alignment explanation
Indices: 77607739--77607815 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
77607729 TATTGAATAA
77607739 TTTATAGTTTTGACTATTTCATTACGAGAAATTATGC
1 TTTATAGTTTTGACTATTTCATTACGAGAAATTATGC
77607776 TTTATAGTTTTGACTATTTCATTACGAGAAATTATGC
1 TTTATAGTTTTGACTATTTCATTACGAGAAATTATGC
77607813 TTT
1 TTT
77607816 CTTATATTCC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48
Consensus pattern (37 bp):
TTTATAGTTTTGACTATTTCATTACGAGAAATTATGC
Found at i:77610900 original size:64 final size:64
Alignment explanation
Indices: 77610819--77611002 Score: 176
Period size: 67 Copynumber: 2.8 Consensus size: 64
77610809 AGACATTATG
* * * *
77610819 ATGTAGCTAGGTCGCATGGGTGATACTCTGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGAGTGGTACTCTGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
77610883 ATGTAGCTAGGTTGCATGCGTGGTTC-CAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGAGTGGTACTC---TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
77610947 TAA
62 TAA
* * ** *
77610950 AT-TGGCTAGGTCACATGAGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGAGTGGTACTCTGTGTACACCATGTAG-ACAAGAGAGC
77611003 CGAACTATAT
Statistics
Matches: 96, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 20 0.21
64 23 0.24
66 20 0.21
67 32 0.33
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGAGTGGTACTCTGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:77611910 original size:2 final size:2
Alignment explanation
Indices: 77611903--77611927 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
77611893 TCATGACATG
77611903 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
77611928 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:77614875 original size:32 final size:32
Alignment explanation
Indices: 77614839--77614901 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
77614829 CCCACCACAG
* *
77614839 TATTAATTGGGCCTAGCCTATCTCAGAATCAA
1 TATTAATTGGGCCTAGCCCATATCAGAATCAA
*
77614871 TATTAGTTGGGCCTAGCCCATATCAGAATCA
1 TATTAATTGGGCCTAGCCCATATCAGAATCA
77614902 GACCCATATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (32 bp):
TATTAATTGGGCCTAGCCCATATCAGAATCAA
Found at i:77619302 original size:2 final size:2
Alignment explanation
Indices: 77619295--77619338 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
77619285 CCACCAGAAC
77619295 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77619337 AT
1 AT
77619339 GTGGCGAAGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77628028 original size:46 final size:46
Alignment explanation
Indices: 77627961--77628089 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
77627951 GACAGGACAG
*
77627961 GACAGAAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
77628007 GACAGGAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
* *
77628053 GACAGGAATGAGCCATGTAAGCCCATATTAGATATAT
1 GACAGGAATGAGCCATGTAAGTCCATATCAGATATAT
77628090 ATGTGGCATT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.26
Consensus pattern (46 bp):
GACAGGAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
Found at i:77630128 original size:27 final size:27
Alignment explanation
Indices: 77630098--77630243 Score: 204
Period size: 27 Copynumber: 5.4 Consensus size: 27
77630088 GGGGCAAAAT
* * * *
77630098 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
77630125 GGTAATTCAACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
77630152 GGTATTTCTACCCTACTA-GGGTATTTC
1 GGTAATTCTACCCTAC-AGGGGTATTTC
* *
77630179 GGTAATTCTATCCTACTGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
77630206 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
77630233 GGTAATTCTAC
1 GGTAATTCTAC
77630244 AAGTTATCCA
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
27 104 0.99
28 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:77633090 original size:44 final size:44
Alignment explanation
Indices: 77633026--77633150 Score: 137
Period size: 44 Copynumber: 2.8 Consensus size: 44
77633016 ATAATCGAAT
* * * *
77633026 ATCGATGCCACTGTCCCAGACAG-GGTCTTACACGTAAATCTCAA
1 ATCGTTGCCACTGTCCCAGAC-GTGGTATTACAAGAAAATCTCAA
* *
77633070 ATCGTTGCCATTGTCTCAGACGTGGTATTACAAGAAAATCTCAA
1 ATCGTTGCCACTGTCCCAGACGTGGTATTACAAGAAAATCTCAA
* * *
77633114 ATCGTTGCCAACT-TCCCAGACGTCGTCTTACACGAAA
1 ATCGTTGCC-ACTGTCCCAGACGTGGTATTACAAGAAA
77633151 TCACATATCG
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 1 0.01
44 65 0.96
45 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (44 bp):
ATCGTTGCCACTGTCCCAGACGTGGTATTACAAGAAAATCTCAA
Found at i:77633267 original size:21 final size:22
Alignment explanation
Indices: 77633224--77633267 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
77633214 CTTTCGGATG
*
77633224 TCGTAACTCGATCGATTCATGC
1 TCGTAACACGATCGATTCATGC
77633246 TCGTAACAC-ATC-ATTCCATGC
1 TCGTAACACGATCGATT-CATGC
77633267 T
1 T
77633268 AAATTCAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 3 0.15
21 9 0.45
22 8 0.40
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.32
Consensus pattern (22 bp):
TCGTAACACGATCGATTCATGC
Found at i:77636908 original size:57 final size:58
Alignment explanation
Indices: 77636787--77636911 Score: 146
Period size: 57 Copynumber: 2.2 Consensus size: 58
77636777 CATTACAGAA
* * * * *
77636787 AGGATTTAGCCTAGACTGGTAATCCTGATATAAGCCCTCTTGAGCATATGTTATAGAT
1 AGGATTTAGCCCAGACGGGTAATCCTGATATAAGCCCTCTTGAGCATATGTTAGAAAC
* * *
77636845 AGGATTTAGCCCGGACGGGTAATCCTGAT-TAAGCTCT-TATGAGCATATGTTGGAAAC
1 AGGATTTAGCCCAGACGGGTAATCCTGATATAAGCCCTCT-TGAGCATATGTTAGAAAC
*
77636902 ATGATTTAGC
1 AGGATTTAGC
77636912 TTGGACAAGT
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
56 1 0.02
57 30 0.53
58 26 0.46
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (58 bp):
AGGATTTAGCCCAGACGGGTAATCCTGATATAAGCCCTCTTGAGCATATGTTAGAAAC
Found at i:77636924 original size:57 final size:58
Alignment explanation
Indices: 77636787--77636933 Score: 136
Period size: 57 Copynumber: 2.6 Consensus size: 58
77636777 CATTACAGAA
** ** * * *
77636787 AGGATTTAGCCTAGACTGGTAATCCTGATATAAGCCCTCTTGAGCATATGTTATAGAT
1 AGGATTTAGCCCGGACAAGTAATCCTGATATAAGCCCTCTTGAGCATATGTTAGAAAC
** * *
77636845 AGGATTTAGCCCGGACGGGTAATCCTGAT-TAAGCTCT-TATGAGCATATGTTGGAAAC
1 AGGATTTAGCCCGGACAAGTAATCCTGATATAAGCCCTCT-TGAGCATATGTTAGAAAC
* ** *
77636902 ATGATTTAGCTTGGACAAGTAATCCTGTTATA
1 AGGATTTAGCCCGGACAAGTAATCCTGATATA
77636934 TGATATATGG
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
56 1 0.01
57 44 0.60
58 28 0.38
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (58 bp):
AGGATTTAGCCCGGACAAGTAATCCTGATATAAGCCCTCTTGAGCATATGTTAGAAAC
Found at i:77640334 original size:21 final size:21
Alignment explanation
Indices: 77640309--77640380 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
77640299 TAAAAAGTTA
** *
77640309 TATGTTAAGTATGATTTGTGT
1 TATGTTAAGTATGATCAGTAT
*
77640330 TATGTTAAATATGATCAGTAT
1 TATGTTAAGTATGATCAGTAT
* * *
77640351 TATGTAAAGTATGACCTGTAT
1 TATGTTAAGTATGATCAGTAT
*
77640372 TATGGTAAG
1 TATGTTAAG
77640381 CATGTATGAA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.43
Consensus pattern (21 bp):
TATGTTAAGTATGATCAGTAT
Found at i:77641853 original size:31 final size:31
Alignment explanation
Indices: 77641818--77641885 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
77641808 GTGTAACATG
*
77641818 ACCGTGTGTAGCACACGTTTGAGACACACGC
1 ACCGTGTGTAGCACACGTCTGAGACACACGC
77641849 ACCGTGTGTAGCACACGTCTGAGACACACGC
1 ACCGTGTGTAGCACACGTCTGAGACACACGC
77641880 -CCGTGT
1 ACCGTGT
77641886 CCCTGCCCGT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 6 0.17
31 30 0.83
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (31 bp):
ACCGTGTGTAGCACACGTCTGAGACACACGC
Found at i:77646232 original size:23 final size:23
Alignment explanation
Indices: 77646203--77646266 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
77646193 AACTAATAAT
* *
77646203 AGTAAGCTTATACGAGCTGAAAC
1 AGTAAGCTCATACGAGCTAAAAC
*
77646226 AGTAAGCTCATACGAGCTAAAAT
1 AGTAAGCTCATACGAGCTAAAAC
* *
77646249 AGTAAGCTCTTATGAGCT
1 AGTAAGCTCATACGAGCT
77646267 GATATATTGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (23 bp):
AGTAAGCTCATACGAGCTAAAAC
Found at i:77653296 original size:2 final size:2
Alignment explanation
Indices: 77653289--77653330 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
77653279 AGTATAGTTG
* *
77653289 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77653331 TCGGCCATCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (2 bp):
AT
Found at i:77654004 original size:29 final size:29
Alignment explanation
Indices: 77653969--77654042 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
77653959 GTTGTGAGAT
* *
77653969 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
77653998 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
77654027 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77654043 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:77663057 original size:40 final size:40
Alignment explanation
Indices: 77663002--77663211 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
77662992 AACATTGGAA
77663002 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77663042 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77663082 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
77663122 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
77663161 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
77663202 CTATATCCGG
1 ATATATCCGG
77663212 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:77670419 original size:40 final size:40
Alignment explanation
Indices: 77670311--77670520 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
77670301 CGGGATTTAA
* * * * *
77670311 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
77670351 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77670391 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77670431 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77670471 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77670511 CCGGATATAT
1 CCGGATATAT
77670521 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:77672822 original size:40 final size:41
Alignment explanation
Indices: 77672739--77672842 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 41
77672729 TCAAATGATG
*
77672739 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAA
* * **
77672779 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCAAA
*
77672819 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
77672843 ATGCGAGCTA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.02
40 45 0.83
41 8 0.15
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAA
Found at i:77682644 original size:27 final size:27
Alignment explanation
Indices: 77682560--77682647 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
77682550 TAAGTTGTAG
* *
77682560 AATTATCGAAATACCCTTGTAGGGTAGA
1 AATTACCGAAATACCCTTGTGGGGTA-A
* * *
77682588 AA-TACAGAAATACCCCTGTGGGGTAG
1 AATTACCGAAATACCCTTGTGGGGTAA
*
77682614 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTGGGGTAA
77682641 AATTACC
1 AATTACC
77682648 ATTTTGCCCC
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
26 2 0.04
27 46 0.92
28 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTGGGGTAA
Found at i:77683329 original size:26 final size:26
Alignment explanation
Indices: 77683282--77683332 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
77683272 CTCGCTGCAA
*
77683282 TCTGGTGGCCTCGCACATATATCTGT
1 TCTGGTGACCTCGCACATATATCTGT
*
77683308 TCTGGTGACTTCGTCACA-ATATCTG
1 TCTGGTGACCTCG-CACATATATCTG
77683333 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCACATATATCTGT
Found at i:77683412 original size:27 final size:25
Alignment explanation
Indices: 77683373--77683431 Score: 64
Period size: 27 Copynumber: 2.3 Consensus size: 25
77683363 ATATATATAT
*
77683373 ATATCTGTTTGGTGGCCTAGCCACA
1 ATATCTGTTTGGTGACCTAGCCACA
* * *
77683398 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-T-TGGTGACCTAGCCACA
77683425 ATATCTG
1 ATATCTG
77683432 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 8 0.29
26 1 0.04
27 19 0.68
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (25 bp):
ATATCTGTTTGGTGACCTAGCCACA
Found at i:77686725 original size:17 final size:17
Alignment explanation
Indices: 77686686--77686725 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
77686676 GGAAAAGATT
77686686 TGGAGACATTACCTGTA
1 TGGAGACATTACCTGTA
**
77686703 CAGAGACATTACCTGTA
1 TGGAGACATTACCTGTA
77686720 TGGAGA
1 TGGAGA
77686726 AAGGTGTATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (17 bp):
TGGAGACATTACCTGTA
Found at i:77689299 original size:27 final size:27
Alignment explanation
Indices: 77689259--77689346 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
77689249 TGGATAAGTT
* *
77689259 GTAGAATTATCGAAATACCCTTGTAGG
1 GTAGAAATACCGAAATACCCTTGTAGG
*
77689286 GTAGAAATACCGAAAGACCCTTGTAGG
1 GTAGAAATACCGAAATACCCTTGTAGG
* * *
77689313 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAAATACCGAAATACCCTTGTAGG
77689340 GTA-AAAT
1 GTAGAAAT
77689347 TACTATTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 3 0.06
27 50 0.94
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (27 bp):
GTAGAAATACCGAAATACCCTTGTAGG
Found at i:77689367 original size:27 final size:27
Alignment explanation
Indices: 77689337--77689388 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
77689327 ATACCCTTGT
*
77689337 GGGGTAAAATTACTATTTTGCCCCTAG
1 GGGGTAAAATGACTATTTTGCCCCTAG
*
77689364 GGGGTTAAATGACTATTTTGCCCCT
1 GGGGTAAAATGACTATTTTGCCCCT
77689389 TGTGCGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (27 bp):
GGGGTAAAATGACTATTTTGCCCCTAG
Found at i:77691090 original size:54 final size:54
Alignment explanation
Indices: 77691025--77691129 Score: 183
Period size: 54 Copynumber: 1.9 Consensus size: 54
77691015 AGTGCGTCCC
*
77691025 AGCACCATGAAGGAGAATGATGGATGTGGCGGTTGAGAACATGTAAGTCATCCT
1 AGCACCATGAAGGAGAACGATGGATGTGGCGGTTGAGAACATGTAAGTCATCCT
* *
77691079 AGCACCGTGAAGGAGAACGATGGATGTGGCGGTTGAGAGCATGTAAGTCAT
1 AGCACCATGAAGGAGAACGATGGATGTGGCGGTTGAGAACATGTAAGTCAT
77691130 TGTCTTCCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.21
Consensus pattern (54 bp):
AGCACCATGAAGGAGAACGATGGATGTGGCGGTTGAGAACATGTAAGTCATCCT
Found at i:77699538 original size:40 final size:39
Alignment explanation
Indices: 77699373--77699556 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
77699363 AAATTGAATG
* * *
77699373 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
77699413 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
77699453 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
77699493 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
77699532 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
77699557 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:77699581 original size:80 final size:81
Alignment explanation
Indices: 77699413--77699601 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
77699403 GCTGGAAATT
* * * *
77699413 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
77699478 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
77699494 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
77699557 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
77699573 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
77699602 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:77707657 original size:40 final size:39
Alignment explanation
Indices: 77707492--77707675 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
77707482 AAATTGAATG
* * *
77707492 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
77707532 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
77707572 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
77707612 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
77707651 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
77707676 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:77707700 original size:80 final size:81
Alignment explanation
Indices: 77707532--77707720 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
77707522 GCTGGAAATT
* * * *
77707532 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
77707597 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
77707613 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
77707676 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
77707692 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
77707721 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:77717364 original size:44 final size:47
Alignment explanation
Indices: 77717310--77717477 Score: 143
Period size: 46 Copynumber: 3.7 Consensus size: 47
77717300 TATGCGTGTT
77717310 GATGCATGTCCCAGACATGTCTTACACTAGC-A-CAACTCTT-A-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTATC-ACTCTTGAGGCC
* * * * *
77717354 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTATCACTCTTGAGGCC
* * * ** *
77717401 AATGCATGTCCCAGACATGTCTTACTCTGGC-ACTCA-TAAT-ATGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTA-TCACTCTTGA-GGCC
* *
77717447 GAAGCATATCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
77717478 CCTCGTTTGG
Statistics
Matches: 100, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
44 28 0.28
45 6 0.06
46 34 0.34
47 32 0.32
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTATCACTCTTGAGGCC
Found at i:77717466 original size:46 final size:45
Alignment explanation
Indices: 77717265--77717571 Score: 196
Period size: 47 Copynumber: 6.6 Consensus size: 45
77717255 TTGTTGATAC
* * * * *
77717265 CATGTCCCAGACATGGTCTTACACTGGCTCACATATATGCGTGTTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCACTCATA-AT-TG-GCTGAAG
* * * * * *
77717314 CATGTCCCAGACATGTCTTACACTAGCAC-AACT-CTTAGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCACTCA-TAATTGGCTGAAG
* * * *
77717358 CGTGTCCCAGACACGTCTTACACTGGCTATCTC-T-GTTGAGGC-CAATG
1 CATGTCCCAGACATGTCTTACACTGGC-A-CTCATAATT--GGCTGAA-G
*
77717405 CATGTCCCAGACATGTCTTACTCTGGCACTCATAATATGGCTGAAG
1 CATGTCCCAGACATGTCTTACACTGGCACTCATAAT-TGGCTGAAG
* * * * * *
77717451 CATATCCCAGACATGTCTTACACTAGCCCTCGT--TTGGATATCGATG
1 CATGTCCCAGACATGTCTTACACTGGCACTCATAATTGG--CT-GAAG
* *
77717497 CCATGTCCTAAACATGGTCTTACACTGGCACTCATAATGTGGCTGAAG
1 -CATGTCCCAGACAT-GTCTTACACTGGCACTCATAAT-TGGCTGAAG
77717545 CATGTCCCAGACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
77717572 GCACAAATCA
Statistics
Matches: 201, Mismatches: 38, Indels: 41
0.72 0.14 0.15
Matches are distributed among these distances:
43 3 0.01
44 30 0.15
45 8 0.04
46 53 0.26
47 54 0.27
48 34 0.17
49 15 0.07
50 1 0.00
51 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCACTCATAATTGGCTGAAG
Found at i:77723767 original size:47 final size:47
Alignment explanation
Indices: 77723706--77723868 Score: 174
Period size: 47 Copynumber: 3.5 Consensus size: 47
77723696 AACGTTCGAA
* *
77723706 CTCGTTGAGTTGAGTCCGAGCTCGTGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAG
* * * *
77723753 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGGCATCCGAG
* *
77723799 CTCATTGAGTTGAGTTCGAGTTCATGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAG
*
77723846 CTCGTTGAGTTGAGTTCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
77723869 GCTTATGGGT
Statistics
Matches: 94, Mismatches: 13, Indels: 18
0.75 0.10 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 26 0.28
47 48 0.51
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAG
Found at i:77723809 original size:93 final size:93
Alignment explanation
Indices: 77723650--77723876 Score: 348
Period size: 93 Copynumber: 2.4 Consensus size: 93
77723640 CGGATATTTG
* * ** *
77723650 GGCATCCAAACTCGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAACGTTCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTTCGAACTCATTGAG
*
77723715 TTGAGTCCGAGCTCGTGAGATGTAACTA
66 TTGAGTCCGAGCTCATGAGATGTAACTA
77723743 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-TCTGAACTCATTGA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTTC-GAACTCATTGA
* *
77723807 GTTGAGTTCGAGTTCATGAGATGTAACTA
65 GTTGAGTCCGAGCTCATGAGATGTAACTA
* *
77723836 GGCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77723877 GTGGGTTACA
Statistics
Matches: 123, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
92 2 0.02
93 121 0.98
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTTCGAACTCATTGAG
TTGAGTCCGAGCTCATGAGATGTAACTA
Found at i:77726796 original size:15 final size:15
Alignment explanation
Indices: 77726778--77726835 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
77726768 GGGTTTCTGC
77726778 ATTCTGGATTTCTTT
1 ATTCTGGATTTCTTT
* *
77726793 ATTCTGGGTTTCTCT
1 ATTCTGGATTTCTTT
*
77726808 A-TCTTGAATTTCTTT
1 ATTC-TGGATTTCTTT
*
77726823 ATTC-GGTTTTCTT
1 ATTCTGGATTTCTT
77726836 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
14 9 0.26
15 23 0.68
16 2 0.06
ACGTcount: A:0.12, C:0.16, G:0.14, T:0.59
Consensus pattern (15 bp):
ATTCTGGATTTCTTT
Found at i:77729316 original size:46 final size:46
Alignment explanation
Indices: 77729257--77729479 Score: 201
Period size: 46 Copynumber: 4.8 Consensus size: 46
77729247 TATTTGGGCA
* *
77729257 TCCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
* * *
77729303 TCCGAACTCGTTGACTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---G
* *
77729348 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
* *
77729396 TCCGAACTCGTTGAGTTGACTCCGAGTTCA-TGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---G
* *
77729441 CATCCGACCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77729480 GCAGGTTACA
Statistics
Matches: 142, Mismatches: 18, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
42 6 0.04
43 9 0.06
45 6 0.04
46 54 0.38
47 54 0.38
48 5 0.04
50 5 0.04
51 3 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
Found at i:77729363 original size:47 final size:47
Alignment explanation
Indices: 77729303--77729472 Score: 197
Period size: 47 Copynumber: 3.6 Consensus size: 47
77729293 GATGTGAACG
*
77729303 TCCGAACTCGTTGACTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* * * *
77729350 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCA
* *
77729396 TCCGAACTCGTTGAGTTGACTCCGAGTTCATGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
*
77729443 TCCGACCTCGTTGAGTTGAGTCCGAGTTCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCG
77729473 CTTATGGGCA
Statistics
Matches: 101, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 27 0.27
47 54 0.53
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.28
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:77729365 original size:93 final size:93
Alignment explanation
Indices: 77729253--77729479 Score: 373
Period size: 93 Copynumber: 2.4 Consensus size: 93
77729243 TGGATATTTG
* * *
77729253 GGCATCCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACGTCCGAACTCGTTGAC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAC
* *
77729318 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGACTCCGAGTTCATGAGATGTAACTA
* *
77729346 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAC
77729411 TTGACTCCGAGTTCATGAGATGTAACTA
66 TTGACTCCGAGTTCATGAGATGTAACTA
* *
77729439 GGCATCCGACCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77729480 GCAGGTTACA
Statistics
Matches: 125, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 125 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAC
TTGACTCCGAGTTCATGAGATGTAACTA
Found at i:77734986 original size:16 final size:16
Alignment explanation
Indices: 77734965--77735023 Score: 109
Period size: 16 Copynumber: 3.7 Consensus size: 16
77734955 ATGTATCGGC
*
77734965 AAAAGCCGAAATGCCG
1 AAAAGCTGAAATGCCG
77734981 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATGCCG
77734997 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATGCCG
77735013 AAAAGCTGAAA
1 AAAAGCTGAAA
77735024 CTTTGGCTAC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.47, C:0.19, G:0.24, T:0.10
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:77735023 original size:8 final size:8
Alignment explanation
Indices: 77734965--77735023 Score: 64
Period size: 8 Copynumber: 7.4 Consensus size: 8
77734955 ATGTATCGGC
77734965 AAAAGCCG
1 AAAAGCCG
*
77734973 AAATGCCG
1 AAAAGCCG
*
77734981 AAAAGCTG
1 AAAAGCCG
*
77734989 AAATGCCG
1 AAAAGCCG
*
77734997 AAAAGCTG
1 AAAAGCCG
*
77735005 AAATGCCG
1 AAAAGCCG
*
77735013 AAAAGCTG
1 AAAAGCCG
77735021 AAA
1 AAA
77735024 CTTTGGCTAC
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
8 40 1.00
ACGTcount: A:0.47, C:0.19, G:0.24, T:0.10
Consensus pattern (8 bp):
AAAAGCCG
Found at i:77736594 original size:40 final size:39
Alignment explanation
Indices: 77736483--77736634 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
77736473 TATAACATGT
* ** *
77736483 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
77736523 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
77736563 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
77736603 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
77736635 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:77736617 original size:80 final size:80
Alignment explanation
Indices: 77736483--77736634 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
77736473 TATAACATGT
* *
77736483 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
77736548 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
77736563 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
77736626 CCCGGATAT
64 CCCGGATAT
77736635 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:77745374 original size:29 final size:28
Alignment explanation
Indices: 77745340--77745442 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
77745330 TACTCAATCA
*
77745340 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
77745369 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
77745398 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
77745427 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
77745443 ATCTTGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:77747523 original size:28 final size:28
Alignment explanation
Indices: 77747454--77747554 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
77747444 GACAAGATTG
* * * *
77747454 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
77747484 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77747512 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
77747541 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77747555 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77757617 original size:29 final size:28
Alignment explanation
Indices: 77757584--77757686 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
77757574 GGGACGAGAT
* *
77757584 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
77757613 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
77757642 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
77757671 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77757687 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:77760107 original size:46 final size:47
Alignment explanation
Indices: 77759963--77760179 Score: 157
Period size: 47 Copynumber: 4.6 Consensus size: 47
77759953 TTATGAGAGC
* *
77759963 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-TATTA-AGACGAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGAGA-TAGT
* * * * *
77760009 GCTAGTGTAAGA-CATATCTAGAACAT-GCATCGGCCT-CGAGA-AGTAAGC
1 -C-AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTATGAGAGA-T-AGT
*
77760057 CAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTATGAGATGATAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGA-GATAGT
* *** **
77760103 CAGTGTAAGACCATGTCTGGGATATGGCATCAAAT-TGAGATG-TGACC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGA-GAT-AGT
77760150 CAGTGTAAGACCATGTCTGGGACATGGCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCAT
77760180 TGACACTTTA
Statistics
Matches: 137, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
45 2 0.01
46 50 0.36
47 65 0.47
48 20 0.15
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGAGATAGT
Found at i:77760133 original size:94 final size:94
Alignment explanation
Indices: 77759915--77760179 Score: 240
Period size: 94 Copynumber: 2.8 Consensus size: 94
77759905 ACTTGCGTGA
* * * **
77759915 GCTAGTGTAAGACATATCTGGAACATGCATTGGCCAC-ATTA-TGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATATCTAGAACATGCATCGGCCTCGAGAAGT-A-AGCCAGTGTAAGACCATG
*
77759978 TCTGGGACATGGCATCGGTATTAAGACGAGT
64 TCTGGGACATGGCATCGGTATGAAGACGAGT
*
77760009 GCTAGTGTAAGACATATCTAGAACATGCATCGGCCTCGAGAAGTAAGCCAGTGTAAGA-CATGTT
1 GCTAGTGTAAGACATATCTAGAACATGCATCGGCCTCGAGAAGTAAGCCAGTGTAAGACCATGTC
*
77760073 TGGGACAT-GCATCGGCTATG-AGATGA-T
66 TGGGACATGGCATCGG-TATGAAGACGAGT
* * * * *** * * * *
77760100 AG-TCAGTGTAAGACCATGTCTGGGATATGGCATC-AAATTGAGATGTGACCCAGTGTAAGACCA
1 -GCT-AGTGTAAGA-CATATCTAGAACAT-GCATCGGCCTCGAGAAGTAAGCCAGTGTAAGACCA
77760163 TGTCTGGGACATGGCAT
62 TGTCTGGGACATGGCAT
77760180 TGACACTTTA
Statistics
Matches: 142, Mismatches: 20, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
91 2 0.01
92 22 0.15
93 45 0.32
94 65 0.46
95 7 0.05
96 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.25
Consensus pattern (94 bp):
GCTAGTGTAAGACATATCTAGAACATGCATCGGCCTCGAGAAGTAAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGTATGAAGACGAGT
Found at i:77767082 original size:91 final size:94
Alignment explanation
Indices: 77766922--77767176 Score: 241
Period size: 94 Copynumber: 2.7 Consensus size: 94
77766912 CCATCGAGGT
* * * ** * * *
77766922 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTGTAT-ACGTGCTGATGCATGTCCTA
1 CGATGCAATGTCCCAGACATCGTCTTACACTAGCTATCAT-AATGA-G-GCCGATGCATGTCCCA
*
77766986 GACATGCCTTACACTAGCACGAAACT-TA-AC
63 AACATGCCTTACACTAGCACGAAACTCTACAC
*
77767016 CGATGC-ATGTCCCAGACA-CGTCTTACACTAGCTATCATCATCGAGGCCGATGCATGTCCCAAA
1 CGATGCAATGTCCCAGACATCGTCTTACACTAGCTATCATAAT-GAGGCCGATGCATGTCCCAAA
* ** * *
77767079 CATGTCTTACACTAGCACTCATCTCTACGC
65 CATGCCTTACACTAGCACGAAACTCTACAC
* * * * * * *
77767109 CGATGCAATGTCCCAGACATGGTCTTACGCTGGCTATCATAATGTGGCTGAAGCATGACCCAAAC
1 CGATGCAATGTCCCAGACATCGTCTTACACTAGCTATCATAATGAGGCCGATGCATGTCCCAAAC
77767174 ATG
66 ATG
77767177 TCAACAAGTT
Statistics
Matches: 134, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
91 37 0.28
92 19 0.14
93 20 0.15
94 39 0.29
95 19 0.14
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (94 bp):
CGATGCAATGTCCCAGACATCGTCTTACACTAGCTATCATAATGAGGCCGATGCATGTCCCAAAC
ATGCCTTACACTAGCACGAAACTCTACAC
Found at i:77767086 original size:47 final size:47
Alignment explanation
Indices: 77766879--77767148 Score: 205
Period size: 47 Copynumber: 5.7 Consensus size: 47
77766869 TTATCGCTGC
* * * *
77766879 CATGTCCCAGACATGGTCTTACGCTGGCTATCACCATCGAGGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTATCATCATCGAGGCCGATG
* ** * * *
77766927 CCATGTCCCAGACATGGTCTTACACTAGCTCTTGTGTATACG-TGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTATCAT-CAT-CGAGGCCGATG
* * * * *
77766977 CATGTCCTAGACATGCCTTACACTAGC-A-CGA--AACTTA-ACCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTATC-ATCATC-GAGGCCGATG
*
77767021 CATGTCCCAGACACGTCTTACACTAGCTATCATCATCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTATCATCATCGAGGCCGATG
* * *
77767068 CATGTCCCAAACATGTCTTACACTAGC-ACTCATC-TCTACGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTA-TCATCATCGAGGCCGATG
* *
77767114 CAATGTCCCAGACATGGTCTTACGCTGGCTATCAT
1 C-ATGTCCCAGACAT-GTCTTACACTAGCTATCAT
77767149 AATGTGGCTG
Statistics
Matches: 175, Mismatches: 32, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
43 1 0.01
44 30 0.17
45 2 0.01
46 14 0.08
47 50 0.29
48 27 0.15
49 42 0.24
50 7 0.04
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTATCATCATCGAGGCCGATG
Found at i:77771230 original size:48 final size:48
Alignment explanation
Indices: 77771111--77771283 Score: 222
Period size: 48 Copynumber: 3.6 Consensus size: 48
77771101 ATATCGATGA
* ** **
77771111 CATGTCCTAGACATGGTCTTACACGAAATCACATATCGACACCAATGC
1 CATGTCCTAGACATGGTCTTACATGGGATCACATATCGATGCCAATGC
* * *
77771159 CATGTCCCAAACATGCTCTTACATGGGATCACATATCGATGCCAATGC
1 CATGTCCTAGACATGGTCTTACATGGGATCACATATCGATGCCAATGC
* *
77771207 CATGTCCTAGACATGGTCTTACATGGGATCAAATATCGATGCCAATTC
1 CATGTCCTAGACATGGTCTTACATGGGATCACATATCGATGCCAATGC
* *
77771255 CATATTCC-GGACATGGTCTTACATGGGAT
1 CAT-GTCCTAGACATGGTCTTACATGGGAT
77771284 TACACATAAC
Statistics
Matches: 109, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
48 106 0.97
49 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (48 bp):
CATGTCCTAGACATGGTCTTACATGGGATCACATATCGATGCCAATGC
Found at i:77776201 original size:71 final size:71
Alignment explanation
Indices: 77776117--77776280 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77776107 CGATTTGTCT
77776117 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77776182 CTTTCA
66 CTTTCA
77776188 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77776253 CTTTCA
66 CTTTCA
77776259 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77776281 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77776318 original size:71 final size:70
Alignment explanation
Indices: 77776117--77776314 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
77776107 CGATTTGTCT
* * * *
77776117 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77776182 CTTTCA
65 CTTTCA
* * * *
77776188 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77776253 CTTTCA
65 CTTTCA
* *
77776259 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
77776315 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:77788905 original size:2 final size:2
Alignment explanation
Indices: 77788898--77788922 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
77788888 TCATGACATG
77788898 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
77788923 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:77792933 original size:29 final size:29
Alignment explanation
Indices: 77792832--77792918 Score: 174
Period size: 29 Copynumber: 3.0 Consensus size: 29
77792822 GTGACGAGAT
77792832 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
77792861 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
77792890 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
77792919 CGGTACTGGG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:77792950 original size:58 final size:58
Alignment explanation
Indices: 77792832--77792962 Score: 167
Period size: 58 Copynumber: 2.3 Consensus size: 58
77792822 GTGACGAGAT
* *
77792832 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAATATA
* ** *
77792890 TGGCACTAAGTGTGCATGCTGGAAATATACGGTACTGGGTGTGCGA-GCTCGAAGA-GTA
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA-ATATA
*
77792948 TGGCACTATGTGTGC
1 TGGCACTAAGTGTGC
77792963 GGGCTTAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
58 62 0.97
59 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (58 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAATATA
Found at i:77796308 original size:66 final size:68
Alignment explanation
Indices: 77796232--77796418 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
77796222 TAGTACCACT
*
77796232 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
77796294 CACG
65 CACG
77796298 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
77796363 ATCACG
63 ATCACG
77796369 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
77796419 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:77796343 original size:71 final size:71
Alignment explanation
Indices: 77796255--77796418 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77796245 CGATTTGTCT
77796255 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77796320 CTTTCA
66 CTTTCA
77796326 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77796391 CTTTCA
66 CTTTCA
77796397 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77796419 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77796456 original size:71 final size:70
Alignment explanation
Indices: 77796255--77796452 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
77796245 CGATTTGTCT
* * *
77796255 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
77796320 CTTTCA
65 CTTTCA
* * *
77796326 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
77796391 CTTTCA
65 CTTTCA
* *
77796397 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
77796453 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:77803851 original size:66 final size:68
Alignment explanation
Indices: 77803775--77803961 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
77803765 TAGTACCACT
*
77803775 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
77803837 CACG
65 CACG
77803841 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
77803906 ATCACG
63 ATCACG
77803912 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
77803962 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:77803886 original size:71 final size:71
Alignment explanation
Indices: 77803798--77803961 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77803788 CGATTTGTCT
77803798 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77803863 CTTTCA
66 CTTTCA
77803869 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77803934 CTTTCA
66 CTTTCA
77803940 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77803962 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77803999 original size:71 final size:70
Alignment explanation
Indices: 77803798--77803995 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
77803788 CGATTTGTCT
* * *
77803798 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
77803863 CTTTCA
65 CTTTCA
* * *
77803869 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
77803934 CTTTCA
65 CTTTCA
* *
77803940 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
77803996 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:77808357 original size:40 final size:40
Alignment explanation
Indices: 77808291--77808441 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
77808281 AAATTGAATG
* * *
77808291 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
77808330 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
77808370 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
77808410 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
77808442 ACGGTTATAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:77816362 original size:40 final size:40
Alignment explanation
Indices: 77816296--77816399 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
77816286 AAATTGAATG
* ** *
77816296 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
* * ***
77816335 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
77816375 ATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
77816400 TTTGTGCACA
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 13 0.24
40 41 0.76
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
Found at i:77816405 original size:40 final size:40
Alignment explanation
Indices: 77816334--77816422 Score: 135
Period size: 40 Copynumber: 2.2 Consensus size: 40
77816324 TGCTGGAAAT
*
77816334 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCA-AGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCACA-TGGC
* *
77816374 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGGT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCACATGGC
77816414 TATATCCGG
1 TATATCCGG
77816423 TTATATTCCG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 44 0.98
41 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCACATGGC
Found at i:77817848 original size:40 final size:40
Alignment explanation
Indices: 77817791--77817994 Score: 277
Period size: 40 Copynumber: 5.1 Consensus size: 40
77817781 TGAATGATAC
* * *
77817791 CCGGGCTAAG-CCACGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACC-CGAAGGCATTTGTGCGAGTTG-TTATAT
*
77817831 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
77817871 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
77817911 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
77817951 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
77817991 CCGG
1 CCGG
77817995 CTAAATTCCG
Statistics
Matches: 147, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
40 143 0.97
41 4 0.03
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:77817924 original size:80 final size:80
Alignment explanation
Indices: 77817787--77817998 Score: 313
Period size: 80 Copynumber: 2.7 Consensus size: 80
77817777 CAATTGAATG
* * *
77817787 ATACCCGGGCTAAG-CCACGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGG
1 ATACCCGGGTTAAGACC-CGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGG
77817850 CATTTGTGCGAGTTGCT
64 CATTTGTGCGAGTTGCT
* *
77817867 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
77817932 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
77817947 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
77817999 ATTCCGAAGA
Statistics
Matches: 120, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
79 6 0.05
80 110 0.92
81 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:77826512 original size:31 final size:31
Alignment explanation
Indices: 77826477--77826538 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
77826467 AACTACTCGT
77826477 GATCTTTCAAAACCTCAAGTCTTTAACACTA
1 GATCTTTCAAAACCTCAAGTCTTTAACACTA
* *
77826508 GATCTTTCAATAGCTCAAGTCTTTAACACTA
1 GATCTTTCAAAACCTCAAGTCTTTAACACTA
77826539 TCTTAACTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (31 bp):
GATCTTTCAAAACCTCAAGTCTTTAACACTA
Found at i:77828406 original size:105 final size:99
Alignment explanation
Indices: 77828227--77828429 Score: 289
Period size: 105 Copynumber: 2.0 Consensus size: 99
77828217 GCCTCAAGTA
* * *
77828227 AAATTTTCTGAATCAACCCAGTGTCCTTAGGAATCCTACCTCGGAACCTCAAGCAACCATCGAAA
1 AAATTTTCTAAATCAACCCAGTGTCCTTAGAAATCCTACCCCGGAACCTCAAGCAACCATCGAAA
*
77828292 TCAACCCAAAAATCTGATTCAACACCCGATTCAT
66 TCAACCCAAAAATCCGATTCAACACCCGATTCAT
77828326 AAATTTTCTAAATCAACCCAGTGTCCTTCGGAACGCAAATCCTACCCCGGAACCTCAAGCAACCA
1 AAATTTTCTAAATCAACCCAGTGTCCTT----A-G-AAATCCTACCCCGGAACCTCAAGCAACCA
* * *
77828391 TCGGAATCAATCCAAAAATCCGATTCAACACCCTATTCA
60 TCGAAATCAACCCAAAAATCCGATTCAACACCCGATTCA
77828430 CACTGTGTTC
Statistics
Matches: 91, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
99 27 0.30
103 1 0.01
104 1 0.01
105 62 0.68
ACGTcount: A:0.35, C:0.32, G:0.11, T:0.22
Consensus pattern (99 bp):
AAATTTTCTAAATCAACCCAGTGTCCTTAGAAATCCTACCCCGGAACCTCAAGCAACCATCGAAA
TCAACCCAAAAATCCGATTCAACACCCGATTCAT
Found at i:77836227 original size:43 final size:42
Alignment explanation
Indices: 77836180--77836320 Score: 126
Period size: 44 Copynumber: 3.3 Consensus size: 42
77836170 TCCTAGACGT
* * *
77836180 GGTCTTACATGTAATCAAATATCGATGCCACTA-TCCCAGACAA
1 GGTCTTACACGAAATCAAATA-CGATGCCA-GAGTCCCAGACAA
**
77836223 GGTCTTACACGAAATCAAATACGATGCCAGAGTCCCAGACGT
1 GGTCTTACACGAAATCAAATACGATGCCAGAGTCCCAGACAA
* * **
77836265 GGTCTTACACTTAAATCATAAGT-CGATGCCA-ACGTCCTAGACGT
1 GGTCTTACAC-GAAATCA-AA-TACGATGCCAGA-GTCCCAGACAA
77836309 GGTCTTACACGA
1 GGTCTTACACGA
77836321 TAACACATAT
Statistics
Matches: 85, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
41 1 0.01
42 26 0.31
43 27 0.32
44 30 0.35
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGCCAGAGTCCCAGACAA
Found at i:77836261 original size:42 final size:41
Alignment explanation
Indices: 77836161--77836320 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 41
77836151 AGCTCGTACA
* * *
77836161 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAA-GTCCCAGACGTGGTCTTACACGAAATCAAATA-CG
**
77836204 ATGCCACTA-TCCCAGACAAGGTCTTACACGAAATCAAATACG
1 ATGCCA--AGTCCCAGACGTGGTCTTACACGAAATCAAATACG
*
77836246 ATGCCAGAGTCCCAGACGTGGTCTTACACTTAAATCATAAGT-CG
1 ATGCCA-AGTCCCAGACGTGGTCTTACAC-GAAATCA-AA-TACG
*
77836290 ATGCCAACGTCCTAGACGTGGTCTTACACGA
1 ATGCCAA-GTCCCAGACGTGGTCTTACACGA
77836321 TAACACATAT
Statistics
Matches: 99, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.26
43 40 0.40
44 30 0.30
45 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (41 bp):
ATGCCAAGTCCCAGACGTGGTCTTACACGAAATCAAATACG
Found at i:77839109 original size:38 final size:38
Alignment explanation
Indices: 77839058--77839134 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
77839048 ATGCTTCAAC
77839058 TAAATATTAACACAAAAAATCAATTCTTATACTTACTT
1 TAAATATTAACACAAAAAATCAATTCTTATACTTACTT
77839096 TAAATATTAACACAAAAAATCAATTCTTATACTTACTT
1 TAAATATTAACACAAAAAATCAATTCTTATACTTACTT
77839134 T
1 T
77839135 TTATACAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.38
Consensus pattern (38 bp):
TAAATATTAACACAAAAAATCAATTCTTATACTTACTT
Found at i:77839710 original size:31 final size:32
Alignment explanation
Indices: 77839672--77839772 Score: 118
Period size: 31 Copynumber: 3.2 Consensus size: 32
77839662 TTTAAAACCC
*
77839672 TAAAACCCCAAACAACCTAAAACCCT-AGTAA
1 TAAAACCCTAAACAACCTAAAACCCTAAGTAA
* *
77839703 TAAAACCCTAAAAAACCTAAAACCCTAATTAA
1 TAAAACCCTAAACAACCTAAAACCCTAAGTAA
*
77839735 TAAAACCCTAAACCA-CTAGAAAACCCTAA-TAA
1 TAAAACCCTAAACAACCT--AAAACCCTAAGTAA
*
77839767 AAAAAC
1 TAAAAC
77839773 AAAGAAAAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
31 26 0.43
32 25 0.41
33 10 0.16
ACGTcount: A:0.55, C:0.28, G:0.02, T:0.15
Consensus pattern (32 bp):
TAAAACCCTAAACAACCTAAAACCCTAAGTAA
Found at i:77839740 original size:15 final size:15
Alignment explanation
Indices: 77839689--77839746 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
77839679 CCAAACAACC
*
77839689 TAAAACCCT-AGTAA
1 TAAAACCCTAAATAA
*
77839703 TAAAACCCTAAAAAA
1 TAAAACCCTAAATAA
*
77839718 CCTAAAACCCTAATTAA
1 --TAAAACCCTAAATAA
77839735 TAAAACCCTAAA
1 TAAAACCCTAAA
77839747 CCACTAGAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
14 9 0.25
15 14 0.39
17 13 0.36
ACGTcount: A:0.55, C:0.24, G:0.02, T:0.19
Consensus pattern (15 bp):
TAAAACCCTAAATAA
Done.