Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 259 of 770
Found at i:77839746 original size:8 final size:8
Alignment explanation
Indices: 77839664--77839730 Score: 50
Period size: 8 Copynumber: 8.4 Consensus size: 8
77839654 TTTATCAATT
77839664 TAAAACCC
1 TAAAACCC
77839672 TAAAACCC
1 TAAAACCC
* *
77839680 CAAACAACC
1 TAAA-ACCC
77839689 TAAAACCC
1 TAAAACCC
*
77839697 TAGTAA---
1 TA-AAACCC
77839703 TAAAACCC
1 TAAAACCC
*
77839711 TAAAAAACC
1 T-AAAACCC
77839720 TAAAACCC
1 TAAAACCC
77839728 TAA
1 TAA
77839731 TTAATAAAAC
Statistics
Matches: 45, Mismatches: 8, Indels: 12
0.69 0.12 0.18
Matches are distributed among these distances:
5 2 0.04
6 2 0.04
8 26 0.58
9 15 0.33
ACGTcount: A:0.54, C:0.31, G:0.01, T:0.13
Consensus pattern (8 bp):
TAAAACCC
Found at i:77843992 original size:28 final size:28
Alignment explanation
Indices: 77843923--77844023 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
77843913 GACAAGATTG
* * * *
77843923 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
77843953 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77843981 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
77844010 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77844024 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77844017 original size:29 final size:28
Alignment explanation
Indices: 77843952--77844023 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
77843942 AAAATTGTAC
*
77843952 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
77843980 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
77844009 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
77844024 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:77849336 original size:28 final size:28
Alignment explanation
Indices: 77849292--77849357 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
77849282 TAAACTTTAA
* *
77849292 AAGATT-AAATTATTTTTCTTATAT-TT
1 AAGATTAAAATTAATTTTATTATATATT
77849318 AAGATTAAAATGTAATTTTATTATATATT
1 AAGATTAAAAT-TAATTTTATTATATATT
*
77849347 AA-TTTAAAATT
1 AAGATTAAAATT
77849358 TTTAAATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 6 0.18
27 5 0.15
28 19 0.56
29 4 0.12
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (28 bp):
AAGATTAAAATTAATTTTATTATATATT
Found at i:77856497 original size:15 final size:16
Alignment explanation
Indices: 77856477--77856514 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
77856467 ATTGAGTAGA
*
77856477 AAATAAATTAA-TATT
1 AAATAAATAAAGTATT
77856492 AAATAAATAAAGTATT
1 AAATAAATAAAGTATT
77856508 AATATAA
1 AA-ATAA
77856515 TGTGAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 10 0.50
16 6 0.30
17 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (16 bp):
AAATAAATAAAGTATT
Found at i:77858547 original size:40 final size:39
Alignment explanation
Indices: 77858503--77858671 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 39
77858493 AGGTTATATA
*
77858503 TGAATGCACATACATGCTCCCGTTTGTACTTCGGTACCCT
1 TGAATGCACATACGTGC-CCCGTTTGTACTTCGGTACCCT
* * *
77858543 TGAATGCACATACGTGCCCTTGTTTGTACTTCGATACCCC
1 TGAATGCACATACGTGCCC-CGTTTGTACTTCGGTACCCT
* * ** * *
77858583 TGAATGCATATATGTGCCGTTGTTTGTACTTCAGTGCCCT
1 TGAATGCACATACGTGCC-CCGTTTGTACTTCGGTACCCT
*
77858623 TGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCT
1 TGAATGCACATACGTGCCCC-GTTTGTACTTCGGTACCCT
*
77858663 CTAAATGCA
1 -TGAATGCA
77858672 TTTTAATGTC
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 97 0.92
41 7 0.07
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (39 bp):
TGAATGCACATACGTGCCCCGTTTGTACTTCGGTACCCT
Found at i:77858564 original size:20 final size:20
Alignment explanation
Indices: 77858539--77858641 Score: 57
Period size: 20 Copynumber: 5.2 Consensus size: 20
77858529 TACTTCGGTA
77858539 CCCTTGAATGCACATACGTG
1 CCCTTGAATGCACATACGTG
** * * *
77858559 CCCTTGTTTGTAC-TTCGATA
1 CCCTTGAATGCACATACG-TG
* * *
77858579 CCCCTGAATGCATATATGTG
1 CCCTTGAATGCACATACGTG
* ** * *
77858599 CCGTTGTTTGTAC-TTCAGTG
1 CCCTTGAATGCACATAC-GTG
77858619 CCCTTGAATGCACATACGTG
1 CCCTTGAATGCACATACGTG
77858639 CCC
1 CCC
77858642 CTGTTTGTAC
Statistics
Matches: 53, Mismatches: 26, Indels: 8
0.61 0.30 0.09
Matches are distributed among these distances:
19 4 0.08
20 45 0.85
21 4 0.08
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.33
Consensus pattern (20 bp):
CCCTTGAATGCACATACGTG
Found at i:77858623 original size:80 final size:81
Alignment explanation
Indices: 77858524--77858672 Score: 237
Period size: 80 Copynumber: 1.9 Consensus size: 81
77858514 ACATGCTCCC
* * *
77858524 GTTTGTACTTCGGTACCCTTGAATGCACATACGTGCCCTTGTTTGTACTTCGATACCC-CTGAAT
1 GTTTGTACTTCAGTACCCTTGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCTCTAAAT
77858588 GCATATATGTGCCGTT
66 GCATATATGTGCCGTT
* * *
77858604 GTTTGTACTTCAGTGCCCTTGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCTCTAAAT
1 GTTTGTACTTCAGTACCCTTGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCTCTAAAT
77858669 GCAT
66 GCAT
77858673 TTTAATGTCT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 53 0.85
81 9 0.15
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (81 bp):
GTTTGTACTTCAGTACCCTTGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCTCTAAAT
GCATATATGTGCCGTT
Found at i:77860450 original size:86 final size:86
Alignment explanation
Indices: 77860293--77860453 Score: 200
Period size: 86 Copynumber: 1.9 Consensus size: 86
77860283 TTTAAATTTG
* ** * *
77860293 GTGAATTCATCAAGTCCGTCTCACTAGGACCACTTAAACTATGGATATGAACTCATTAAGAGTAA
1 GTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTATGGACATGAACTAATTAAGAGTAA
77860358 TAAACTCAACCTCACATGTCA
66 TAAACTCAACCTCACATGTCA
** * *
77860379 GTGAATTCATCAAGTTTGTCTCAATAGGACCACCCAAACCT-TGGGCCATGAATTAATTAAGAGT
1 GTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAA-CTAT-GGACATGAACTAATTAAGAGT
*
77860443 AA-GAACTCAAC
64 AATAAACTCAAC
77860454 TGTAACACCC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
86 42 0.67
87 21 0.33
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (86 bp):
GTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTATGGACATGAACTAATTAAGAGTAA
TAAACTCAACCTCACATGTCA
Found at i:77868368 original size:93 final size:93
Alignment explanation
Indices: 77868258--77868428 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
77868248 GCCCCTAAGT
* *
77868258 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
77868323 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
77868351 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
77868416 CGAGTTCGGATGC
66 CGAGTTCGGATGC
77868429 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77868425 original size:46 final size:46
Alignment explanation
Indices: 77868253--77868425 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
77868243 AACCCGCCCC
* * * *
77868253 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
77868299 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
77868347 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
77868392 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77868426 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:77875918 original size:93 final size:93
Alignment explanation
Indices: 77875808--77875978 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
77875798 GCCCCTAAGT
* *
77875808 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
77875873 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
77875901 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
77875966 CGAGTTCGGATGC
66 CGAGTTCGGATGC
77875979 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77875975 original size:46 final size:46
Alignment explanation
Indices: 77875803--77875975 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
77875793 AACCCGCCCC
* * * *
77875803 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
77875849 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
77875897 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
77875942 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77875976 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:77881452 original size:27 final size:27
Alignment explanation
Indices: 77881414--77881469 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
77881404 GAGAAAAAGA
77881414 ATGGCTAATTTTTGGTTCATTTTTCCC
1 ATGGCTAATTTTTGGTTCATTTTTCCC
77881441 ATGGCTAATTTTTGGTTCATTTTTCCC
1 ATGGCTAATTTTTGGTTCATTTTTCCC
77881468 AT
1 AT
77881470 TTTATTTCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.16, C:0.18, G:0.14, T:0.52
Consensus pattern (27 bp):
ATGGCTAATTTTTGGTTCATTTTTCCC
Found at i:77887506 original size:27 final size:27
Alignment explanation
Indices: 77887468--77887523 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
77887458 GAGAAAAAGA
77887468 ATGGCTAATTTTTGGTTCATTTTTCCC
1 ATGGCTAATTTTTGGTTCATTTTTCCC
77887495 ATGGCTAATTTTTGGTTCATTTTTCCC
1 ATGGCTAATTTTTGGTTCATTTTTCCC
77887522 AT
1 AT
77887524 TTTATTTCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.16, C:0.18, G:0.14, T:0.52
Consensus pattern (27 bp):
ATGGCTAATTTTTGGTTCATTTTTCCC
Found at i:77893065 original size:40 final size:40
Alignment explanation
Indices: 77893020--77893186 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
77893010 CGGAATATAA
77893020 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** * * *
77893060 CCGGATCGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
77893100 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77893140 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
77893179 CCGGATAT
1 CCGGATAT
77893187 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77903150 original size:61 final size:61
Alignment explanation
Indices: 77903080--77903201 Score: 199
Period size: 61 Copynumber: 2.0 Consensus size: 61
77903070 CTTATGATGA
77903080 CACAATCAAAACCAAACATCTTAGAATACATACATGCATATACACTATTAAAAATAAAACC
1 CACAATCAAAACCAAACATCTTAGAATACATACATGCATATACACTATTAAAAATAAAACC
* * * * *
77903141 CACAATCAAAACCAAACATCTTAGTATACATTCATGTATCTACACTATTAACAATAAAACC
1 CACAATCAAAACCAAACATCTTAGAATACATACATGCATATACACTATTAAAAATAAAACC
77903202 AAAACTGAGA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.49, C:0.24, G:0.03, T:0.24
Consensus pattern (61 bp):
CACAATCAAAACCAAACATCTTAGAATACATACATGCATATACACTATTAAAAATAAAACC
Found at i:77904954 original size:43 final size:44
Alignment explanation
Indices: 77904873--77904965 Score: 116
Period size: 43 Copynumber: 2.1 Consensus size: 44
77904863 GATCACCTAT
* * * * *
77904873 GGGACGTTGGCATCGATATATGTGTTTTCGTGTGAGACCATGTCA
1 GGGACGTTGGCATC-AGATATGTGGTTACGAGTAAGACCATGTCA
*
77904918 GGGACGTTGGCAT-AGATATGTGGTTACGAGTAAGACCATGTCC
1 GGGACGTTGGCATCAGATATGTGGTTACGAGTAAGACCATGTCA
77904961 GGGAC
1 GGGAC
77904966 ATCAACATCG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 29 0.69
45 13 0.31
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.28
Consensus pattern (44 bp):
GGGACGTTGGCATCAGATATGTGGTTACGAGTAAGACCATGTCA
Found at i:77906584 original size:45 final size:45
Alignment explanation
Indices: 77906520--77906610 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
77906510 AGGATTATGC
* *
77906520 TATGTGTTTTTGTGTAAGACCACATCTAGGACGTTGGCACCGATA
1 TATGTGTTTTCGTGTAAGACCACATCTAAGACGTTGGCACCGATA
** * *
77906565 TATGTGTTTTCGTGTAAGACCATGTCTAAGATGTTGGCATCGATA
1 TATGTGTTTTCGTGTAAGACCACATCTAAGACGTTGGCACCGATA
77906610 T
1 T
77906611 GTGGTTACGA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (45 bp):
TATGTGTTTTCGTGTAAGACCACATCTAAGACGTTGGCACCGATA
Found at i:77906647 original size:43 final size:41
Alignment explanation
Indices: 77906564--77906718 Score: 123
Period size: 43 Copynumber: 3.7 Consensus size: 41
77906554 TGGCACCGAT
* * **
77906564 ATATGTGTTTTCGTGTAAGACCATGTCTAAGATGTTGGCATCG
1 ATATGTG-ATTCGTGTAAGACCATGTCTGAGA-CATGGCATCG
* * *
77906607 ATATGTGGTTACGAGTAAGACCATGTATGAGACATCGGCATC-
1 ATATGTGATT-CGTGTAAGACCATGTCTGAGACAT-GGCATCG
* * *
77906649 ATATTTGATTCGTGTAAGACCTTGTCTGGGACAGTGGCATCG
1 ATATGTGATTCGTGTAAGACCATGTCTGAGACA-TGGCATCG
* * * *
77906691 ATATGAGATAGCATGTAAGACCACGTCT
1 ATATGTGAT-TCGTGTAAGACCATGTCT
77906719 AGGACGTTGG
Statistics
Matches: 89, Mismatches: 18, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
41 25 0.28
42 19 0.21
43 45 0.51
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (41 bp):
ATATGTGATTCGTGTAAGACCATGTCTGAGACATGGCATCG
Found at i:77906731 original size:84 final size:89
Alignment explanation
Indices: 77906532--77906731 Score: 193
Period size: 84 Copynumber: 2.3 Consensus size: 89
77906522 TGTGTTTTTG
* * * *
77906532 TGTAAGACCACATCTAGGACGTTGGCACCGATATATGTGTTTTCGTGTAAGACCATGTCTAAGAT
1 TGTAAGACCACGTCTAGGACGTTGGCATCGATATATGTGTATTCGTGTAAGACCATGTCTAAGAA
* *
77906597 GTTGGCATCGATATGTGGTTACGA
66 GTTGGCATCGATATGTAGATACGA
* * * * * **
77906621 -GTAAGACCATGTAT-GAGACATCGGCATC-ATAT-T-TG-ATTCGTGTAAGACCTTGTCTGGGA
1 TGTAAGACCACGTCTAG-GACGTTGGCATCGATATATGTGTATTCGTGTAAGACCATGTCTAAGA
77906680 CAG-TGGCATCGATATG-AGATA-GCA
65 -AGTTGGCATCGATATGTAGATACG-A
77906704 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTAGGACGTTGGCAT
77906732 TGTTTGATAT
Statistics
Matches: 89, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
82 1 0.01
83 4 0.04
84 54 0.61
85 4 0.04
86 1 0.01
87 5 0.06
88 20 0.22
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (89 bp):
TGTAAGACCACGTCTAGGACGTTGGCATCGATATATGTGTATTCGTGTAAGACCATGTCTAAGAA
GTTGGCATCGATATGTAGATACGA
Found at i:77908337 original size:38 final size:38
Alignment explanation
Indices: 77908286--77908362 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
77908276 CCTTGTCATG
77908286 AAGTGTCACACGCCCGCGTAGACGGGCTGTGTGGACTC
1 AAGTGTCACACGCCCGCGTAGACGGGCTGTGTGGACTC
* *
77908324 AAGTGTCACACGCCTGTGTAGACGGGCTGTGTGGACTC
1 AAGTGTCACACGCCCGCGTAGACGGGCTGTGTGGACTC
77908362 A
1 A
77908363 CACGCTCATG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.19, C:0.26, G:0.34, T:0.21
Consensus pattern (38 bp):
AAGTGTCACACGCCCGCGTAGACGGGCTGTGTGGACTC
Found at i:77912121 original size:27 final size:27
Alignment explanation
Indices: 77912066--77912127 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
77912056 GCATAATCAC
* *
77912066 CATTCTACCATACAGGGGTATTATAGT
1 CATTTTACCATACAGGGGTATTACAGT
* *
77912093 CATTTTACCCTACAGGGGTATTACGGT
1 CATTTTACCATACAGGGGTATTACAGT
77912120 CATTTTAC
1 CATTTTAC
77912128 AAACCGAGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
CATTTTACCATACAGGGGTATTACAGT
Found at i:77912692 original size:51 final size:51
Alignment explanation
Indices: 77912616--77912718 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
77912606 ATGTTTCACG
*
77912616 ACGTACAGTTACACACCTGTTATGGATTGTAGTCGAACCGCTTCCAAGATT
1 ACGTACAATTACACACCTGTTATGGATTGTAGTCGAACCGCTTCCAAGATT
77912667 ACGTACAATTACACACCTGTTATGGATTGTAGTCGAACCGCTTCCAAGATT
1 ACGTACAATTACACACCTGTTATGGATTGTAGTCGAACCGCTTCCAAGATT
77912718 A
1 A
77912719 AGCACCTATG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (51 bp):
ACGTACAATTACACACCTGTTATGGATTGTAGTCGAACCGCTTCCAAGATT
Found at i:77922688 original size:13 final size:13
Alignment explanation
Indices: 77922670--77922694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77922660 AAAATTATTA
77922670 TATATATATTTTT
1 TATATATATTTTT
77922683 TATATATATTTT
1 TATATATATTTT
77922695 AAGTTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TATATATATTTTT
Found at i:77922871 original size:25 final size:25
Alignment explanation
Indices: 77922838--77922885 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
77922828 TTAAATTAAC
77922838 TATTATATATTA-CTTATTTTAAAAT
1 TATTATATA-TACCTTATTTTAAAAT
*
77922863 TATTTTATATACCTTATTTTAAA
1 TATTATATATACCTTATTTTAAA
77922886 CCCATTTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (25 bp):
TATTATATATACCTTATTTTAAAAT
Found at i:77927224 original size:15 final size:15
Alignment explanation
Indices: 77927204--77927236 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
77927194 TTTACTTTCC
77927204 AGAGAGAGGTAGAAA
1 AGAGAGAGGTAGAAA
77927219 AGAGAGAGGTAGAAA
1 AGAGAGAGGTAGAAA
77927234 AGA
1 AGA
77927237 AAATCTGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.06
Consensus pattern (15 bp):
AGAGAGAGGTAGAAA
Found at i:77935509 original size:205 final size:205
Alignment explanation
Indices: 77935135--77935828 Score: 1018
Period size: 205 Copynumber: 3.4 Consensus size: 205
77935125 ACAAATCTGG
*
77935135 CCTTCAGATG-TTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAGCAA
1 CCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAA
* * *
77935199 ATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATGATTTGTCA
66 ATCGAAGACATAGCTGATTTGGCTTTCACGTTATTACGATGAAACAAATCTAAGATGATTTGTCG
77935264 TCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATA
131 TCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATA
77935329 GCAGATCTCA
196 GCAGATCTCA
* * * * *
77935339 CCTTCAGATGATTT-CACTAAAGTAGATCCAAGATGGTTTGGCATCTTTGTGTTTATAAGGAACA
1 CCTTCAGATG-TTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACA
* *
77935403 AATCGAAGACATAGCTGATTTGGCTTTCACGTTATTACAATGAACCAAATCTAAGATGATTTGTC
65 AATCGAAGACATAGCTGATTTGGCTTTCACGTTATTACGATGAAACAAATCTAAGATGATTTGTC
*
77935468 GTCTCTGTATTGTCAGAGAACGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACAT
130 GTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACAT
*
77935533 AGCAGATCTCG
195 AGCAGATCTCA
* * *
77935544 CCTTCGGATGTTTATACTGAAGCGGATCCAAGATGGTTTGGAATCCTTGTGTTTACAAGGAACAA
1 CCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAA
* *
77935609 ATCGAAGACATAGCTGATTTGGTTTTCACGTGT-TTACGTTGAAACAAATCTAAGATGATTTGTC
66 ATCGAAGACATAGCTGATTTGGCTTTCACGT-TATTACGATGAAACAAATCTAAGATGATTTGTC
* * ** * * * *
77935673 GTCGCTGTATTGTCAGAGAACAAATCGAAGCCTGGCATCTCCA-TTTCAATAGAGAGCAGATACA
130 GTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT-GATGGAGAGCAGACACA
* *
77935737 TAGTAGATCTGA
194 TAGCAGATCTCA
* * * *
77935749 TCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAAGAACA
1 CCTTCAGATGTTTATACTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACA
**
77935814 AATTAAAGACATAGC
65 AATCGAAGACATAGC
77935829 AAATTTGACT
Statistics
Matches: 439, Mismatches: 45, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
204 16 0.04
205 371 0.85
206 52 0.12
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (205 bp):
CCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAA
ATCGAAGACATAGCTGATTTGGCTTTCACGTTATTACGATGAAACAAATCTAAGATGATTTGTCG
TCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATA
GCAGATCTCA
Found at i:77937859 original size:25 final size:25
Alignment explanation
Indices: 77937826--77937873 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
77937816 TTAAATTAAC
*
77937826 TATTATATATTA-TTTATTTTAAAAT
1 TATTATATA-TACCTTATTTTAAAAT
*
77937851 TATTTTATATACCTTATTTTAAA
1 TATTATATATACCTTATTTTAAA
77937874 CCCATTTACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (25 bp):
TATTATATATACCTTATTTTAAAAT
Found at i:77939891 original size:39 final size:38
Alignment explanation
Indices: 77939769--77939897 Score: 159
Period size: 40 Copynumber: 3.3 Consensus size: 38
77939759 CGGAATATAA
*
77939769 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCA-CTGCAC-AATGCCTTCGGGTCTTAGC
* **
77939809 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-GCAC-AATGCCTTCGGGTCTTAGC
* *
77939849 CCGGATATAGCCACTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTGCACAA-TGCCTTCGGGTCTTAGC
77939888 CCGGATATAA
1 CCGGATATAA
77939898 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.03
39 30 0.39
40 44 0.58
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (38 bp):
CCGGATATAACCACTGCACAATGCCTTCGGGTCTTAGC
Found at i:77944819 original size:68 final size:70
Alignment explanation
Indices: 77944747--77944944 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
77944737 ACACCCTGTA
* * * *
77944747 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
77944809 ATAAAT
65 ATAAAT
*
77944815 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
77944880 ATAAAT
65 ATAAAT
*
77944886 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
77944945 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:77944858 original size:41 final size:41
Alignment explanation
Indices: 77944813--77944930 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
77944803 TGAAAGATAA
77944813 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
77944854 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77944884 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77944925 ATGTAG
1 ATGTAG
77944931 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:77944870 original size:71 final size:71
Alignment explanation
Indices: 77944781--77944944 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77944771 GAGATGTATC
77944781 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77944846 AGGACA
66 AGGACA
77944852 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77944917 AGGACA
66 AGGACA
77944923 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
77944945 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:77954755 original size:41 final size:41
Alignment explanation
Indices: 77954710--77954827 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
77954700 TGAAAGATAA
77954710 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
77954751 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77954781 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77954822 ATGTAG
1 ATGTAG
77954828 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:77954766 original size:71 final size:71
Alignment explanation
Indices: 77954678--77954841 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77954668 GAGATGTATC
77954678 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77954743 AGGACA
66 AGGACA
77954749 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77954814 AGGACA
66 AGGACA
77954820 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
77954842 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:77956221 original size:40 final size:40
Alignment explanation
Indices: 77956161--77956492 Score: 601
Period size: 40 Copynumber: 8.3 Consensus size: 40
77956151 GTTACAAGGT
*
77956161 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
77956201 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
77956241 TTAGCCCGGATACATTACTAGCACGAATGCTTTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
77956281 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
77956321 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
77956361 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
77956401 TTAGCCCGGATTCATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
77956441 TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
77956481 TTAGCCCGGATA
1 TTAGCCCGGATA
77956493 TATATAACTC
Statistics
Matches: 283, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 283 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
Found at i:77957846 original size:37 final size:37
Alignment explanation
Indices: 77957779--77957916 Score: 222
Period size: 37 Copynumber: 3.7 Consensus size: 37
77957769 TGAATAGTCC
* *
77957779 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
* * *
77957816 CCATACGTTGTCATCGAGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
77957853 CCACACGTAGTCACCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
77957890 CCACACGTAGTCATCGGGTCTTACCCG
1 CCACACGTAGTCATCGGGTCTTACCCG
77957917 AAATATATTT
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 91 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:77958121 original size:48 final size:48
Alignment explanation
Indices: 77958059--77958292 Score: 432
Period size: 48 Copynumber: 4.9 Consensus size: 48
77958049 ATATACACAC
* *
77958059 ATCTCCTACGTATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77958107 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77958155 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77958203 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
77958251 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACACACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTAC-CACA
77958293 AAAACCATTG
Statistics
Matches: 182, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
48 178 0.98
49 4 0.02
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:77958336 original size:96 final size:96
Alignment explanation
Indices: 77958059--77958321 Score: 334
Period size: 96 Copynumber: 2.8 Consensus size: 96
77958049 ATATACACAC
* * * * * * **
77958059 ATCTCCTACGTATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAAAAACACATCTCATACAAAAGTCA
77958124 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* * * * **
77958155 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAAAAACACATCTCATACAAAAGTCA
77958220 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* * *
77958251 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACACACAAAAAC-CAT-TGATA-AAAAGTG
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTAC-CACAAAAACACATCTCATACAAAAGTC
77958313 ATCACTAGC
65 A-CACTAGC
77958322 TCTTCGGTTA
Statistics
Matches: 154, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
94 4 0.03
95 11 0.07
96 132 0.86
97 7 0.05
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (96 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAAAAACACATCTCATACAAAAGTCA
CACTAGCCATTCGGCTTTACCACATATACAT
Found at i:77958336 original size:144 final size:144
Alignment explanation
Indices: 77958059--77958321 Score: 388
Period size: 144 Copynumber: 1.8 Consensus size: 144
77958049 ATATACACAC
* *
77958059 ATCTCCTACGTATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * * * **
77958124 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACAAAAACACATCTCATACAAAAGTCACACTAGCCATTCGGCTT
77958189 TACCACATATACAT
131 TACCACATATACAT
77958203 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * *
77958268 CATTAGCCATTCGGCTTTACACACAAAAAC-CAT-TGATA-AAAAGTGATCACTAGC
66 CACTAGCCATTCGGCTTTAC-CACAAAAACACATCTCATACAAAAGTCA-CACTAGC
77958322 TCTTCGGTTA
Statistics
Matches: 106, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
142 4 0.04
143 11 0.10
144 84 0.79
145 7 0.07
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (144 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACAAAAACACATCTCATACAAAAGTCACACTAGCCATTCGGCTT
TACCACATATACAT
Found at i:77961944 original size:25 final size:26
Alignment explanation
Indices: 77961916--77961970 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
77961906 ATGTGTTACA
* *
77961916 AATTTTAATGCTTTAA-TGTTAT-ATG
1 AATTTAAATGC-TTAATTGCTATCATG
77961941 AATTTAAATGCTTAATTGCTATCATG
1 AATTTAAATGCTTAATTGCTATCATG
77961967 AATT
1 AATT
77961971 ATACCCATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 4 0.15
25 15 0.58
26 7 0.27
ACGTcount: A:0.35, C:0.07, G:0.11, T:0.47
Consensus pattern (26 bp):
AATTTAAATGCTTAATTGCTATCATG
Found at i:77964600 original size:46 final size:45
Alignment explanation
Indices: 77964508--77964682 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 45
77964498 AATATTCACA
* * * * **
77964508 TATTCTCAATTCCACAACATATTCAAGAGCT-TAAAACCTAAACTTG
1 TATTCTC-GTTCCGCAACATATGCAGGAGCTCT-AAACCTATTCTTG
*
77964554 TATTCTCGTGTCCGCAACATATGCAGGAGCTC-AGAATCTATTCTTG
1 TATTCTCGT-TCCGCAACATATGCAGGAGCTCTA-AACCTATTCTTG
* * * *
77964600 TATTCTTGAATCCGCAACATGTGCAGGAGCTCTAAACCTATTCATG
1 TATTCTCG-TTCCGCAACATATGCAGGAGCTCTAAACCTATTCTTG
* * *
77964646 TATCCTCGATTCCACAACATATGCAGGAGCTCGAAAC
1 TATTCTCG-TTCCGCAACATATGCAGGAGCTCTAAAC
77964683 ATGGGCAAAA
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 2 0.02
46 103 0.97
47 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (45 bp):
TATTCTCGTTCCGCAACATATGCAGGAGCTCTAAACCTATTCTTG
Found at i:77966768 original size:46 final size:46
Alignment explanation
Indices: 77966701--77966875 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
77966691 TGTAACCCGC
* * *
77966701 CCATAAGCAAACTCAGACTCAACTCAACGAACTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
77966747 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* * *
77966797 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* * * * *
77966840 CCACAAGTGAACTCGGACCCAAATCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
77966876 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 1 0.01
46 58 0.55
47 27 0.26
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:77966818 original size:93 final size:93
Alignment explanation
Indices: 77966710--77966880 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
77966700 CCCATAAGCA
* * * *
77966710 AACTCAGACTCAACTCAACGAACTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAACTCGGACATTCGCATCCACAAGTGAACTCGGACCCAAATCAAC
77966775 GAGCTCGGATGCCTAGTTACATCTCACG
66 GAGCTCGGATGCCTAGTTACATCTCACG
* **
77966803 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGTGAACTCGGACCCAAATCAAC
1 AACTCAGACTCAACTCAACGAACTCGGACATTCGCATCCACAAGTGAACTCGGACCCAAATCAAC
*
77966868 GAGTTCGGATGCC
66 GAGCTCGGATGCC
77966881 CAAATATCCT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.19
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAACTCGGACATTCGCATCCACAAGTGAACTCGGACCCAAATCAAC
GAGCTCGGATGCCTAGTTACATCTCACG
Found at i:77968697 original size:22 final size:22
Alignment explanation
Indices: 77968649--77968726 Score: 122
Period size: 22 Copynumber: 3.6 Consensus size: 22
77968639 CATTTTCCAA
* *
77968649 AACCACTTG-ACTTTACGATCG
1 AACCACTTGTACTTTAGGATTG
*
77968670 AGCCACTTGTACTTTAGGATTG
1 AACCACTTGTACTTTAGGATTG
77968692 AACCACTTGTACTTTAGGATTG
1 AACCACTTGTACTTTAGGATTG
77968714 AACCACTTGTACT
1 AACCACTTGTACT
77968727 AAACTAATTA
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
21 8 0.15
22 44 0.85
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (22 bp):
AACCACTTGTACTTTAGGATTG
Found at i:77969137 original size:18 final size:19
Alignment explanation
Indices: 77969104--77969169 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
77969094 TAGGAAATAC
*
77969104 AAAAAATAAA-AT-AAAAG
1 AAAAAATAAATTTAAAAAG
*
77969121 -AAAAATAGATTTAAAAAG
1 AAAAAATAAATTTAAAAAG
77969139 AAAAAATAAATTTAAGAAA-
1 AAAAAATAAATTTAA-AAAG
*
77969158 ATAAAATAAATT
1 AAAAAATAAATT
77969170 GGTAAATAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
16 8 0.20
17 1 0.02
18 5 0.12
19 24 0.59
20 3 0.07
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (19 bp):
AAAAAATAAATTTAAAAAG
Found at i:77970041 original size:13 final size:13
Alignment explanation
Indices: 77970023--77970055 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
77970013 TAGATTTTTC
77970023 CTAAATATTATCA
1 CTAAATATTATCA
77970036 CTAAATATTATCA
1 CTAAATATTATCA
77970049 CTAAATA
1 CTAAATA
77970056 ACTTAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.36
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:77970644 original size:15 final size:15
Alignment explanation
Indices: 77970624--77970657 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
77970614 CAATATATAC
77970624 TTTTATTTATATATT
1 TTTTATTTATATATT
* *
77970639 TTTTATTTTTTTATT
1 TTTTATTTATATATT
77970654 TTTT
1 TTTT
77970658 TCAAACTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTATTTATATATT
Found at i:77978182 original size:40 final size:40
Alignment explanation
Indices: 77978138--77978321 Score: 144
Period size: 40 Copynumber: 4.6 Consensus size: 40
77978128 GCTACTCGTT
* *
77978138 CAAATGCCTTTAGGACATAGCCCGGTTATAGTAACTCTCA
1 CAAATGCCTTTAGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
77978178 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTACCTCGCA
1 CAAATGCCTTTAGGACTTAGCCCGG-TTATAGTAACTCGCA
* * * *
77978218 CCAATGCC-TTCGGGCTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTTAGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
77978257 CAAATGCC-TTCGGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTTAGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
*
77978298 CAAA-GCCTTTGGGACTTAGCCCGG
1 CAAATGCCTTTAGGACTTAGCCCGG
77978322 ACATCATTCG
Statistics
Matches: 114, Mismatches: 23, Indels: 14
0.75 0.15 0.09
Matches are distributed among these distances:
39 35 0.31
40 63 0.55
41 16 0.14
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTTAGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:77978255 original size:39 final size:40
Alignment explanation
Indices: 77978166--77978269 Score: 156
Period size: 39 Copynumber: 2.6 Consensus size: 40
77978156 AGCCCGGTTA
* *
77978166 TAGTAACTCTCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
* * *
77978206 TAGTACCTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
77978245 TAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
77978270 ATCTTAGTCT
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
39 34 0.60
40 23 0.40
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
Found at i:77978306 original size:79 final size:80
Alignment explanation
Indices: 77978166--77978322 Score: 194
Period size: 79 Copynumber: 2.0 Consensus size: 80
77978156 AGCCCGGTTA
* * * *
77978166 TAGTAACTCTCACAAATGCCTTCGGGACTTAACCCGGATTTAGTACCTCGCACCAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTACCTAGCACCAAAGCCTTCGG
77978231 G-CTTAGCCCGGAAT
66 GACTTAGCCCGGAAT
** * * *
77978245 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCA-CAAAGCCTTT
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGT-ACCTAGCACCAAAGCCTTC
77978308 GGGACTTAGCCCGGA
64 GGGACTTAGCCCGGA
77978323 CATCATTCGA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
78 3 0.05
79 46 0.70
80 17 0.26
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTACCTAGCACCAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:77985260 original size:28 final size:27
Alignment explanation
Indices: 77985197--77985266 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
77985187 ATAGTGAGTC
77985197 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
77985224 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
77985252 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77985267 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:77994921 original size:15 final size:15
Alignment explanation
Indices: 77994901--77994969 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
77994891 GTATCTTGGG
77994901 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
77994916 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
77994931 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
77994946 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
77994961 TTTCTTTAT
1 TTTCTTTAT
77994970 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:77994970 original size:30 final size:30
Alignment explanation
Indices: 77994892--77994979 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
77994882 CATAGTATCG
* * * *
77994892 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
77994922 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
77994952 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
77994980 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:78001440 original size:28 final size:27
Alignment explanation
Indices: 78001377--78001446 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
78001367 ATAGTGAGTC
78001377 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
78001404 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
78001432 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78001447 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:78005740 original size:79 final size:81
Alignment explanation
Indices: 78005631--78005813 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
78005621 TACTCGTTCA
* *
78005631 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
78005694 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
78005711 AATGCCTTC-GGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
78005774 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
78005790 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
78005814 CATCGTTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:78005813 original size:40 final size:40
Alignment explanation
Indices: 78005610--78005813 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
78005600 CGGAATTTAA
** *
78005610 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78005650 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78005690 CCGGATTTAGTAACTCGCACCAATGCCTTC-GGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
78005729 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
78005769 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
78005809 CCGGA
1 CCGGA
78005814 CATCGTTCGA
Statistics
Matches: 143, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
39 39 0.27
40 92 0.64
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:78011001 original size:17 final size:17
Alignment explanation
Indices: 78010976--78011017 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
78010966 ATTGATTAAG
*
78010976 ATAATAAAATAAGAA-AAT
1 ATAA-AAAATAA-AATAAA
78010994 ATAAAAAATAAAATAAA
1 ATAAAAAATAAAATAAA
78011011 ATAAAAA
1 ATAAAAA
78011018 TAGATTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 16 0.73
18 4 0.18
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (17 bp):
ATAAAAAATAAAATAAA
Found at i:78011048 original size:19 final size:19
Alignment explanation
Indices: 78011008--78011062 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
78010998 AAAATAAAAT
* *
78011008 AAAATAAAAATAGATTTGA
1 AAAAAAAAAATAAATTTGA
*
78011027 AAAGGAAAAAATAAATTT-A
1 AAA-AAAAAAATAAATTTGA
78011046 AAAAAATAAAATAAATT
1 AAAAAA-AAAATAAATT
78011063 GGTAAATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 2 0.07
19 17 0.57
20 11 0.37
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (19 bp):
AAAAAAAAAATAAATTTGA
Found at i:78011049 original size:20 final size:18
Alignment explanation
Indices: 78010996--78011062 Score: 57
Period size: 19 Copynumber: 3.7 Consensus size: 18
78010986 AAGAAAATAT
*
78010996 AAAAAATAAA-AT-AAAA
1 AAAAAATAAATTTAAAAA
* * *
78011012 TAAAAATAGATTTGAAAAGG
1 AAAAAATAAATTT-AAAA-A
78011032 AAAAAATAAATTTAAAAA
1 AAAAAATAAATTTAAAAA
78011050 AATAAAATAAATT
1 AA-AAAATAAATT
78011063 GGTAAATAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
16 8 0.21
17 1 0.03
18 2 0.05
19 17 0.44
20 11 0.28
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (18 bp):
AAAAAATAAATTTAAAAA
Found at i:78011957 original size:13 final size:13
Alignment explanation
Indices: 78011916--78011971 Score: 57
Period size: 13 Copynumber: 4.5 Consensus size: 13
78011906 TAGGTTTTTC
*
78011916 CTAAATATTATCT
1 CTAAATATTATCA
*
78011929 C-AAA-ATAATC-
1 CTAAATATTATCA
78011939 CTAAATATT-TCCA
1 CTAAATATTAT-CA
78011952 CTAAATATTATCA
1 CTAAATATTATCA
78011965 CTAAATA
1 CTAAATA
78011972 ATTTAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
10 1 0.03
11 9 0.25
12 6 0.17
13 19 0.53
14 1 0.03
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:78012670 original size:5 final size:5
Alignment explanation
Indices: 78012660--78012692 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
78012650 TTGTGTGTTC
78012660 TTTAT TTTAT TTTA- TTTAT TTTATT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTT
78012693 TTTCACAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
5 17 0.65
6 5 0.19
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:78012679 original size:14 final size:15
Alignment explanation
Indices: 78012660--78012695 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
78012650 TTGTGTGTTC
78012660 TTTATTTTA-TTTTA
1 TTTATTTTATTTTTA
78012674 TTTATTTTATTTTTA
1 TTTATTTTATTTTTA
78012689 TTT-TTTT
1 TTTATTTT
78012696 CACAAATTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTATTTTATTTTTA
Found at i:78017766 original size:39 final size:38
Alignment explanation
Indices: 78017714--78017797 Score: 96
Period size: 39 Copynumber: 2.2 Consensus size: 38
78017704 TAACGGATAA
* * *
78017714 CAAAATTTTTAATGGATTCCAAAATATTTAACCAAACAC
1 CAAAATCTCTAATGGATACCAAAATATTTAA-CAAACAC
* * * *
78017753 CAAAATCTCTAATGGATACCAAATTTTTTGACAAATAC
1 CAAAATCTCTAATGGATACCAAAATATTTAACAAACAC
78017791 CAAAATC
1 CAAAATC
78017798 ACAGAAAATC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
38 13 0.34
39 25 0.66
ACGTcount: A:0.45, C:0.19, G:0.06, T:0.30
Consensus pattern (38 bp):
CAAAATCTCTAATGGATACCAAAATATTTAACAAACAC
Found at i:78019881 original size:2 final size:2
Alignment explanation
Indices: 78019872--78019900 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
78019862 AAAAACATAG
78019872 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78019901 GTATTATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:78020978 original size:30 final size:29
Alignment explanation
Indices: 78020930--78020987 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
78020920 GATTTTTGAA
* *
78020930 AATTGAATCAAATTAAAATTTAATATATAC
1 AATTGAATAAAATCAAAATTT-ATATATAC
*
78020960 AATTGCATAAAATCAAAATTTATATATA
1 AATTGAATAAAATCAAAATTTATATATA
78020988 ATATTACACG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.36
Consensus pattern (29 bp):
AATTGAATAAAATCAAAATTTATATATAC
Found at i:78028881 original size:47 final size:47
Alignment explanation
Indices: 78028790--78028944 Score: 283
Period size: 47 Copynumber: 3.3 Consensus size: 47
78028780 ATTTTGTTAC
78028790 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGT
78028839 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
*
78028886 GATGAATGTGAAAGTGTATGTATGTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
78028933 GATGAATGTGAA
1 GATGAATGTGAA
78028945 GGCCGAATGG
Statistics
Matches: 105, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
47 85 0.81
49 20 0.19
ACGTcount: A:0.33, C:0.07, G:0.32, T:0.28
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
Found at i:78028944 original size:22 final size:22
Alignment explanation
Indices: 78028873--78028953 Score: 60
Period size: 22 Copynumber: 3.5 Consensus size: 22
78028863 TGATAAGGCC
78028873 GAATGGCCAATGTGATGAATGT
1 GAATGGCCAATGTGATGAATGT
* * *
78028895 GAAAGTG-TATGTATGTGAT-AAGGCT
1 GAATG-GCCA---ATGTGATGAATG-T
78028920 GAATGGCCAATGTGATGAATGT
1 GAATGGCCAATGTGATGAATGT
78028942 GAA-GGCCGAATG
1 GAATGGCC-AATG
78028954 GCCAATGTGA
Statistics
Matches: 45, Mismatches: 6, Indels: 16
0.67 0.09 0.24
Matches are distributed among these distances:
21 4 0.09
22 20 0.44
23 4 0.09
24 4 0.09
25 13 0.29
ACGTcount: A:0.32, C:0.09, G:0.33, T:0.26
Consensus pattern (22 bp):
GAATGGCCAATGTGATGAATGT
Found at i:78028955 original size:29 final size:29
Alignment explanation
Indices: 78028914--78028973 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
78028904 TGTATGTGAT
*
78028914 AAGGCTGAATGGCCAATGTGATGAATGTG
1 AAGGCCGAATGGCCAATGTGATGAATGTG
78028943 AAGGCCGAATGGCCAATGTGATGAATGTG
1 AAGGCCGAATGGCCAATGTGATGAATGTG
78028972 AA
1 AA
78028974 AGTGTATGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.33, T:0.22
Consensus pattern (29 bp):
AAGGCCGAATGGCCAATGTGATGAATGTG
Found at i:78028960 original size:76 final size:76
Alignment explanation
Indices: 78028867--78029020 Score: 299
Period size: 76 Copynumber: 2.0 Consensus size: 76
78028857 TGTATGTGAT
*
78028867 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCTGAATGGCCAATG
1 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
78028932 TGATGAATGTG
66 TGATGAATGTG
78028943 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
1 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
78029008 TGATGAATGTG
66 TGATGAATGTG
78029019 AA
1 AA
78029021 AGTGTATGTA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.25
Consensus pattern (76 bp):
AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
TGATGAATGTG
Found at i:78029055 original size:96 final size:96
Alignment explanation
Indices: 78028943--78029123 Score: 301
Period size: 96 Copynumber: 1.9 Consensus size: 96
78028933 GATGAATGTG
* * *
78028943 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
1 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGCCAATG
78029008 TGAT-GAATGTGAAAGTGTATGTATATGTGAT
66 TGATGGAA-GTGAAAGTGTATGTATATGTGAT
*
78029039 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGTCAATG
1 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGCCAATG
*
78029104 TGATGGAAGTGGAAGTGTAT
66 TGATGGAAGTGAAAGTGTAT
78029124 AACTGTGATA
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
96 76 0.96
97 3 0.04
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (96 bp):
AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGCCAATG
TGATGGAAGTGAAAGTGTATGTATATGTGAT
Found at i:78029088 original size:172 final size:171
Alignment explanation
Indices: 78028790--78029108 Score: 559
Period size: 172 Copynumber: 1.9 Consensus size: 171
78028780 ATTTTGTTAC
78028790 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTATG-ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * *
78028855 TATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCT
65 TATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCC
78028920 GAATGGCCAATGTGATGAATGTGAAGGCCGAATGGCCAATGT
130 GAATGGCCAATGTGATGAATGTGAAGGCCGAATGGCCAATGT
78028962 GATGAATGTGAAAGTGTATG-TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
1 GATGAATGTGAAAGTGTATGATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
78029026 ATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGC
66 ATG--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGC
*
78029091 CGAATGGTCAATGTGATG
129 CGAATGGCCAATGTGATG
78029109 GAAGTGGAAG
Statistics
Matches: 140, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
170 47 0.34
172 93 0.66
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (171 bp):
GATGAATGTGAAAGTGTATGATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
ATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCCG
AATGGCCAATGTGATGAATGTGAAGGCCGAATGGCCAATGT
Found at i:78029133 original size:47 final size:47
Alignment explanation
Indices: 78028943--78029135 Score: 291
Period size: 47 Copynumber: 4.1 Consensus size: 47
78028933 GATGAATGTG
*
78028943 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGAT
1 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
78028990 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGAT
1 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA--TATATGTGAT
* *
78029039 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGAT
1 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
* *
78029086 AAGGCCGAATGGTCAATGTGATGGAA-GTGGAAGTGTATA-ACTGTGAT
1 AAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTGTATATA-TGTGAT
78029133 AAG
1 AAG
78029136 TCCCGAAGGA
Statistics
Matches: 135, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
46 1 0.01
47 86 0.64
48 3 0.02
49 45 0.33
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (47 bp):
AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
Found at i:78031030 original size:40 final size:40
Alignment explanation
Indices: 78030975--78031128 Score: 265
Period size: 40 Copynumber: 3.9 Consensus size: 40
78030965 TTTAGTATGT
78030975 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
78031015 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* *
78031055 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGTTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* *
78031095 TGTATCCGGGCTAAGCCCCGAAG-GCATTCGTGCT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
78031129 TGGACAAAAT
Statistics
Matches: 110, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 10 0.09
40 100 0.91
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
Found at i:78031424 original size:25 final size:25
Alignment explanation
Indices: 78031374--78031424 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
78031364 TGTGTGACAA
* *
78031374 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
78031399 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
78031424 C
1 C
78031425 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:78035268 original size:47 final size:47
Alignment explanation
Indices: 78035177--78035434 Score: 401
Period size: 47 Copynumber: 5.4 Consensus size: 47
78035167 ATTTTGTTAC
78035177 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGT
*
78035226 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATAT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
78035273 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
*
78035320 GATGAATGTAAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGT
* * * *
78035369 GATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGTCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
*
78035416 GATGGAA-GTGGAAGTGTAT
1 GAT-GAATGTGAAAGTGTAT
78035435 AACTGTGATA
Statistics
Matches: 196, Mismatches: 10, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
47 129 0.66
48 3 0.02
49 64 0.33
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.28
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
Found at i:78035355 original size:96 final size:94
Alignment explanation
Indices: 78035177--78035419 Score: 396
Period size: 96 Copynumber: 2.5 Consensus size: 94
78035167 ATTTTGTTAC
*
78035177 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAAGTG
78035242 TATGTATGTGATAAGGCCGAATGGCCAATAT
64 TATGTATGTGATAAGGCCGAATGGCCAATAT
78035273 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAAGTGTA
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAAGTGTA
*
78035338 TGTATATGTGATAAGGCCGAATGGCCAATGT
66 TG--TATGTGATAAGGCCGAATGGCCAATAT
* * * *
78035369 GATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGTCAATGTGATG
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATG
78035420 GAAGTGGAAG
Statistics
Matches: 139, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
94 46 0.33
96 93 0.67
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (94 bp):
GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAAGTGTA
TGTATGTGATAAGGCCGAATGGCCAATAT
Found at i:78035442 original size:143 final size:143
Alignment explanation
Indices: 78035177--78035446 Score: 436
Period size: 143 Copynumber: 1.9 Consensus size: 143
78035167 ATTTTGTTAC
* *
78035177 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 GATGAATGTAAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTA
* * *
78035242 TATGTATGTGATAAGGCCGAATGGCCAATATGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
66 TATATATATGATAAGGCCGAATGGCCAATATGATGAATGTGAAAGTGTATGAATGTGATAAGGCC
78035307 GAATGGCCAATGT
131 GAATGGCCAATGT
78035320 GATGAATGTAAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTA
1 GATGAATGTAAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTA
* * *
78035385 TATATATATGATAAGGCCGAATGGTCAATGTGATGGAA-GTGGAAGTGTAT-AACTGTGATAAG
66 TATATATATGATAAGGCCGAATGGCCAATATGAT-GAATGTGAAAGTGTATGAA-TGTGATAAG
78035447 TCCCGAAGGA
Statistics
Matches: 117, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
142 1 0.01
143 113 0.97
144 3 0.03
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.28
Consensus pattern (143 bp):
GATGAATGTAAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTA
TATATATATGATAAGGCCGAATGGCCAATATGATGAATGTGAAAGTGTATGAATGTGATAAGGCC
GAATGGCCAATGT
Found at i:78038276 original size:29 final size:30
Alignment explanation
Indices: 78038211--78038284 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 30
78038201 CCCATATGTC
*
78038211 TGTGTGGCCTACACAGCCTAACTAGCTCAT
1 TGTGTGGCCTACACAGCCTAACTAGCACAT
*
78038241 TCGTGTGGCCCACACAGCCTAAC-ATGCAC-T
1 T-GTGTGGCCTACACAGCCTAACTA-GCACAT
78038271 TGTGTGGCCTACAC
1 TGTGTGGCCTACAC
78038285 GACCCATTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
29 12 0.31
30 4 0.10
31 23 0.59
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (30 bp):
TGTGTGGCCTACACAGCCTAACTAGCACAT
Found at i:78041179 original size:25 final size:25
Alignment explanation
Indices: 78041162--78041218 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
78041152 CAGTTCGAGA
*
78041162 GAGCTTACCAGTATTCAGCTCACAT
1 GAGCTTACCAATATTCAGCTCACAT
**
78041187 GAGCTTACCAATATTCAGCTCGTAT
1 GAGCTTACCAATATTCAGCTCACAT
78041212 GAGCTTA
1 GAGCTTA
78041219 TCGTTTACAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (25 bp):
GAGCTTACCAATATTCAGCTCACAT
Found at i:78048624 original size:29 final size:28
Alignment explanation
Indices: 78048571--78048638 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
78048561 AAGAATAAGA
*
78048571 AATTTCATTAGGTTATTTCAGGTTAATT
1 AATTTCATTAGATTATTTCAGGTTAATT
*
78048599 AATTTCCATTAGATTAATTT-ATGTTAATT
1 AATTT-CATTAGATT-ATTTCAGGTTAATT
*
78048628 AATTTAATTAG
1 AATTTCATTAG
78048639 TAATTTTGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 10 0.29
29 21 0.60
30 4 0.11
ACGTcount: A:0.34, C:0.06, G:0.10, T:0.50
Consensus pattern (28 bp):
AATTTCATTAGATTATTTCAGGTTAATT
Found at i:78053232 original size:24 final size:23
Alignment explanation
Indices: 78053134--78053234 Score: 139
Period size: 24 Copynumber: 4.2 Consensus size: 23
78053124 AAAGGCTGTC
*
78053134 AGGAGAAGATTTAGGAGCTGCTA
1 AGGAGAAGATTTAGGAGCTGATA
*
78053157 AGAGAGAGGATTTAGGAGCTGATA
1 AG-GAGAAGATTTAGGAGCTGATA
*
78053181 AGGGAGAGGATTTAGGAGCTGATAA
1 A-GGAGAAGATTTAGGAGCTGAT-A
78053206 AGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTGAT-A
78053230 AGGAG
1 AGGAG
78053235 CAGGAGTTGG
Statistics
Matches: 71, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
23 2 0.03
24 66 0.93
25 3 0.04
ACGTcount: A:0.37, C:0.06, G:0.38, T:0.20
Consensus pattern (23 bp):
AGGAGAAGATTTAGGAGCTGATA
Found at i:78053600 original size:45 final size:45
Alignment explanation
Indices: 78053551--78053638 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
78053541 CTTTTCCATC
*
78053551 ATTCTTGACCGATTCTCTAGTTCTCTAAACCTCAAGGTTCTGTTG
1 ATTCTTAACCGATTCTCTAGTTCTCTAAACCTCAAGGTTCTGTTG
** *
78053596 ATTCTTAATTGATTCTCTAGTTCTCTAAACCTTAAGGTTCTGT
1 ATTCTTAACCGATTCTCTAGTTCTCTAAACCTCAAGGTTCTGT
78053639 CGACAAGACC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.43
Consensus pattern (45 bp):
ATTCTTAACCGATTCTCTAGTTCTCTAAACCTCAAGGTTCTGTTG
Found at i:78055662 original size:77 final size:81
Alignment explanation
Indices: 78055542--78055722 Score: 232
Period size: 77 Copynumber: 2.3 Consensus size: 81
78055532 TACTCGTTCA
* *
78055542 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAGACCGG
* *
78055604 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
*
78055621 AATGCCTTC-GG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGGA
*
78055683 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
78055699 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
78055723 CATCATTCGA
Statistics
Matches: 89, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
76 3 0.03
77 36 0.40
78 24 0.27
79 15 0.17
80 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGGA
TATAGTAACTTAGCAC
Found at i:78055722 original size:40 final size:40
Alignment explanation
Indices: 78055521--78055722 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
78055511 TCGAATTTAA
** *
78055521 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78055561 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA-A
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78055600 CCGGATTTAGTAACTCGCACCAATGCCTTC-GG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
78055638 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
78055678 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
78055718 CCGGA
1 CCGGA
78055723 CATCATTCGA
Statistics
Matches: 139, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
37 4 0.03
38 31 0.22
39 28 0.20
40 64 0.46
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:78063798 original size:78 final size:81
Alignment explanation
Indices: 78063681--78063862 Score: 232
Period size: 78 Copynumber: 2.3 Consensus size: 81
78063671 TACTCGTTCA
* *
78063681 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
78063744 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
78063761 AATGCCTTC-GG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
78063823 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
78063839 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
78063863 CATCATTCGA
Statistics
Matches: 89, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
77 3 0.03
78 57 0.64
79 9 0.10
80 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:78063862 original size:40 final size:40
Alignment explanation
Indices: 78063660--78063862 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
78063650 CGGAATTTAA
** *
78063660 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78063700 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78063740 CCGGATTTAGTAACTCGCACCAATGCCTTC-GG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
78063778 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
78063818 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
78063858 CCGGA
1 CCGGA
78063863 CATCATTCGA
Statistics
Matches: 141, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 34 0.24
39 3 0.02
40 92 0.65
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:78069318 original size:79 final size:81
Alignment explanation
Indices: 78069227--78069410 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
78069217 ACGACTCGCT
** * *
78069227 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGC-CGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
78069289 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
78069306 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
78069370 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
78069386 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78069411 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 20 0.22
79 52 0.58
80 18 0.20
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:78069410 original size:40 final size:39
Alignment explanation
Indices: 78069220--78069410 Score: 154
Period size: 39 Copynumber: 4.8 Consensus size: 39
78069210 GGATATAACG
* ** * *
78069220 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
78069260 ACTCGC-CGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
78069299 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
78069338 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
78069378 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
78069411 CATCATTCGA
Statistics
Matches: 120, Mismatches: 23, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
38 2 0.02
39 58 0.48
40 52 0.43
41 8 0.07
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:78073496 original size:49 final size:49
Alignment explanation
Indices: 78073394--78073731 Score: 554
Period size: 49 Copynumber: 6.9 Consensus size: 49
78073384 GTATGAGATG
* *
78073394 TATATATATGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TA
78073445 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
78073494 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
78073543 TATACATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
78073590 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
78073639 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
78073688 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
78073732 CATATGTGTG
Statistics
Matches: 274, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 42 0.15
49 187 0.68
51 45 0.16
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:78073570 original size:98 final size:98
Alignment explanation
Indices: 78073394--78073731 Score: 554
Period size: 96 Copynumber: 3.4 Consensus size: 98
78073384 GTATGAGATG
* *
78073394 TATATATATGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATATGTGATAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATATGTGATAA
78073459 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
64 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
78073494 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
* *
78073559 CCTAATAGCCAATGTGATGAATGTGAAAGAG--
66 CCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
78073590 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
* *
78073655 CCTAATGGCCGATGTGATGAATGTGAAGGTGTA
66 CCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
78073688 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
78073732 CATATGTGTG
Statistics
Matches: 223, Mismatches: 13, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
96 89 0.40
98 89 0.40
100 45 0.20
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (98 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
CCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:78073657 original size:145 final size:148
Alignment explanation
Indices: 78073402--78073731 Score: 549
Period size: 145 Copynumber: 2.2 Consensus size: 148
78073392 TGTATATATA
*
78073402 TGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAAT
1 TGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG-GTATATATATATGTGATAAGGCCTAAT
78073467 GGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAAT
65 GGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAAT
78073532 GTGAAAGTGTATATACATG
130 GTGAAAGTGTATATACATG
* *
78073551 TGATAAGGCCTAATAGCCAATGTGATGAATGTGAAA-G-A-GTATATATGTGATAAGGCCTAATG
1 TGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGGTATATATATATGTGATAAGGCCTAATG
* * *
78073613 GCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
66 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
* *
78073678 TGAAGGTGTATATATATG
131 TGAAAGTGTATATACATG
*
78073696 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
78073732 CATATGTGTG
Statistics
Matches: 171, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
145 135 0.79
146 1 0.01
147 1 0.01
149 34 0.20
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (148 bp):
TGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGGTATATATATATGTGATAAGGCCTAATG
GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
TGAAAGTGTATATACATG
Found at i:78073815 original size:123 final size:123
Alignment explanation
Indices: 78073688--78073933 Score: 474
Period size: 123 Copynumber: 2.0 Consensus size: 123
78073678 TGAAGGTGTA
78073688 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
*
78073753 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATTTATATGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
78073811 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
*
78073876 TGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
78073934 GAATGGCTAA
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 121 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.33
Consensus pattern (123 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
Found at i:78073818 original size:18 final size:18
Alignment explanation
Indices: 78073795--78073830 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
78073785 GTGTGATATT
*
78073795 TATATGTGGTAAAGCCTA
1 TATATGTGATAAAGCCTA
*
78073813 TATATGTGATAAGGCCTA
1 TATATGTGATAAAGCCTA
78073831 ATGGCCGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (18 bp):
TATATGTGATAAAGCCTA
Found at i:78073834 original size:66 final size:69
Alignment explanation
Indices: 78073747--78073885 Score: 167
Period size: 75 Copynumber: 2.0 Consensus size: 69
78073737 GTGTGATATG
* *
78073747 TATATGTGGTAAAGCCGAATGG-C-T-AATGTGAAACATATGTGTGATATTTATATGTGGTAAAG
1 TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
78073809 CCTA
66 CCTA
* *
78073813 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTG
1 TATATGTGATAAAGCCGAATGGCC-----G-TGAATGTGAAACATATGTGTGATATGTATATGTG
78073878 GTAAAGCC
60 GTAAAGCC
78073886 GAATGGCTAA
Statistics
Matches: 60, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
66 19 0.32
67 1 0.02
74 1 0.02
75 39 0.65
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.32
Consensus pattern (69 bp):
TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
CCTA
Found at i:78073900 original size:48 final size:48
Alignment explanation
Indices: 78073846--78073997 Score: 277
Period size: 48 Copynumber: 3.2 Consensus size: 48
78073836 CGATGTGATG
*
78073846 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
78073894 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
78073942 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCTGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
78073990 AATGTGAA
1 AATGTGAA
78073998 TGTTGTAACA
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 101 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.33
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:78073937 original size:171 final size:172
Alignment explanation
Indices: 78073639--78073980 Score: 496
Period size: 171 Copynumber: 2.0 Consensus size: 172
78073629 TGAAGGTGTA
** *
78073639 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAACATATATATATATGTGATAAGG
*
78073704 CCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGG
66 CCTAATAGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGG
*
78073769 CTAATGTGAAACATATGTGTGATATTTATATGTGGTAAAGCC
131 CTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
* * *
78073811 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGT-ATAT
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AACATATATAT-ATATGTGATAA
* * *
78073875 GTG-GTAA-AGCCGAATG-GCT-AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
64 G-GCCTAATAGCCG-ATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGA
* *
78073936 ATGGCTAATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGC
127 ATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGC
78073981 TGAATGGCTA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
171 83 0.54
172 47 0.31
173 16 0.10
174 7 0.05
ACGTcount: A:0.32, C:0.08, G:0.27, T:0.32
Consensus pattern (172 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAACATATATATATATGTGATAAGG
CCTAATAGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGG
CTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
Found at i:78074091 original size:37 final size:37
Alignment explanation
Indices: 78074037--78074164 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
78074027 AACTTGGAAA
*
78074037 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
78074075 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
78074112 TATGTCCGGATAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
78074149 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
78074165 TTCGTAATAA
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
37 83 0.95
38 4 0.05
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:78080518 original size:24 final size:23
Alignment explanation
Indices: 78080420--78080520 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 23
78080410 AAAGACTGTC
78080420 AGGAGAAGATTTAGGAGCTGATA
1 AGGAGAAGATTTAGGAGCTGATA
*
78080443 AGAGAGAGGATTTAGGAGCTGATA
1 AG-GAGAAGATTTAGGAGCTGATA
*
78080467 AGGGAGAGGATTTAGGAGCTGATAA
1 A-GGAGAAGATTTAGGAGCTGAT-A
78080492 AGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTGAT-A
78080516 AGGAG
1 AGGAG
78080521 CAGGAGTTGG
Statistics
Matches: 72, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
23 2 0.03
24 67 0.93
25 3 0.04
ACGTcount: A:0.38, C:0.05, G:0.38, T:0.20
Consensus pattern (23 bp):
AGGAGAAGATTTAGGAGCTGATA
Found at i:78083331 original size:47 final size:47
Alignment explanation
Indices: 78083259--78083400 Score: 241
Period size: 47 Copynumber: 3.0 Consensus size: 47
78083249 GTTAAATTTA
*
78083259 AAGCTTGTTAAA-TTGCTCTTAATATTTCTGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
78083305 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
* * *
78083352 AAGCTTGTTAAATTTACCCTTATTATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
78083399 AA
1 AA
78083401 AGAAAATTTT
Statistics
Matches: 91, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 12 0.13
47 79 0.87
ACGTcount: A:0.29, C:0.13, G:0.14, T:0.44
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
Found at i:78084269 original size:45 final size:44
Alignment explanation
Indices: 78084205--78084467 Score: 266
Period size: 45 Copynumber: 6.0 Consensus size: 44
78084195 ATATCGTACA
78084205 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTC-GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* **
78084250 ATACTATTCGAGCCTTTGAGCCTAGCAAGCTATAATGCATGTGAG
1 ATACTATTCG-GCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* * ** *
78084295 ATACTATTTGGGCTTCAAGCCTAGCAGGC-AAAATGCCGGTGAG
1 ATACTATTCGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* * * *
78084338 ATACTATTCGGGCTTTCGAGCCTAGCAGGC-AAAATACCGATGAG
1 ATACTATTCGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAG
* * * *
78084382 ATACTATTCGAGCTTTTGAGCCTAGCAGGCTATAATACTGGTGAA
1 ATACTATTCG-GCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* * * *
78084427 ATGA-TA-TCGGGCTTCGAGCCTAGCAGGCGA-AAGGCCGGTGA
1 AT-ACTATTCGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
78084468 ATGAATTCGG
Statistics
Matches: 184, Mismatches: 29, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
42 8 0.04
43 42 0.23
44 66 0.36
45 67 0.36
46 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (44 bp):
ATACTATTCGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
Found at i:78084360 original size:44 final size:45
Alignment explanation
Indices: 78084205--78084467 Score: 274
Period size: 44 Copynumber: 6.0 Consensus size: 45
78084195 ATATCGTACA
*
78084205 ATACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGG-CTTTCGAGCCTAGCAGGCTAAAATGCCGGTGAG
* * * **
78084250 ATACTATTCGAGCCTTT-GAGCCTAGCAAGCTATAATGCATGTGAG
1 ATACTATTCG-GGCTTTCGAGCCTAGCAGGCTAAAATGCCGGTGAG
* *
78084295 ATACTATTTGGGC-TTCAAGCCTAGCAGGC-AAAATGCCGGTGAG
1 ATACTATTCGGGCTTTCGAGCCTAGCAGGCTAAAATGCCGGTGAG
* *
78084338 ATACTATTCGGGCTTTCGAGCCTAGCAGGC-AAAATACCGATGAG
1 ATACTATTCGGGCTTTCGAGCCTAGCAGGCTAAAATGCCGGTGAG
* * * * * *
78084382 ATACTATTCGAGCTTTTGAGCCTAGCAGGCTATAATACTGGTGAA
1 ATACTATTCGGGCTTTCGAGCCTAGCAGGCTAAAATGCCGGTGAG
* *
78084427 ATGA-TA-TCGGGC-TTCGAGCCTAGCAGGC-GAAAGGCCGGTGA
1 AT-ACTATTCGGGCTTTCGAGCCTAGCAGGCTAAAATGCCGGTGA
78084468 ATGAATTCGG
Statistics
Matches: 185, Mismatches: 28, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
42 8 0.04
43 40 0.22
44 73 0.39
45 62 0.34
46 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (45 bp):
ATACTATTCGGGCTTTCGAGCCTAGCAGGCTAAAATGCCGGTGAG
Found at i:78086792 original size:40 final size:40
Alignment explanation
Indices: 78086722--78086929 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
78086712 CGGGATTTAA
** * *
78086722 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
78086761 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
78086801 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
78086841 CCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
78086881 CCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
78086922 CCGGATAT
1 CCGGATAT
78086930 CATTCGAATA
Statistics
Matches: 138, Mismatches: 27, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
39 15 0.11
40 95 0.69
41 28 0.20
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:78097565 original size:40 final size:40
Alignment explanation
Indices: 78097484--78097705 Score: 351
Period size: 40 Copynumber: 5.6 Consensus size: 40
78097474 TATTCGAATG
*
78097484 ATATCCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTATTGACT
78097525 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
78097565 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
78097604 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
78097644 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
78097684 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
78097706 TACTTGGGTT
Statistics
Matches: 170, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 52 0.31
40 90 0.53
41 28 0.16
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:78097617 original size:79 final size:79
Alignment explanation
Indices: 78097484--78097705 Score: 358
Period size: 79 Copynumber: 2.8 Consensus size: 79
78097474 TATTCGAATG
78097484 ATATCCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGT-CCGAAGGCA-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
78097549 ATTTGTGCTATTGACT
64 ATTTGTGCTATTGACT
*
78097565 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCTT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCAT
78097630 TTGTGCTATTGACT
66 TTGTGCTATTGACT
* * *
78097644 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
78097706 TACTTGGGTT
Statistics
Matches: 135, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
79 83 0.61
80 35 0.26
81 17 0.13
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCTATTGACT
Found at i:78097703 original size:119 final size:120
Alignment explanation
Indices: 78097484--78097705 Score: 369
Period size: 119 Copynumber: 1.9 Consensus size: 120
78097474 TATTCGAATG
*
78097484 ATATCCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGC
* *
78097549 ATTTGTGCTATTGACTATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
66 ATTTGTGCGATTGACTATATCCGGGCTAAATCCGAAGGCATTTGTGCTAGTGACT
*
78097604 ATATCCGGGCTAAGTCCCGAAGGC-TTTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGC
78097668 ATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
66 ATTTGTGCGA-TTGACTATATCCGGGCTAAAT-CCGAAGG
78097706 TACTTGGGTT
Statistics
Matches: 96, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
118 7 0.07
119 62 0.65
120 27 0.28
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (120 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGC
ATTTGTGCGATTGACTATATCCGGGCTAAATCCGAAGGCATTTGTGCTAGTGACT
Found at i:78106151 original size:40 final size:40
Alignment explanation
Indices: 78106063--78106281 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
78106053 TATTCGAATG
78106063 ATATCC-GGCTAAGTCCCGAAGGCTTTTGTGCTA-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
78106101 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
* *
78106141 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
78106181 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
* * *
78106221 ATATCCGGGCTAAGACCCGAA-GCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTA-TTGACT
*
78106260 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
78106282 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
38 18 0.11
39 46 0.27
40 104 0.62
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
Found at i:78109468 original size:42 final size:43
Alignment explanation
Indices: 78109366--78109483 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 43
78109356 GTAACAATGT
* * *
78109366 CATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGAC
1 CATATCCCAGATATGGTCTTACACGTAATCTCATATAGATGAC
* * *
78109409 AATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATAGATG-C
1 CATATCCCAGATATGGTCTTACACGTAA-TCTCATATAGATGAC
* *
78109451 CATATCCCAGATATGGTCTTAAAGGTAATCTCA
1 CATATCCCAGATATGGTCTTACACGTAATCTCA
78109484 GTAACCCTAA
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (43 bp):
CATATCCCAGATATGGTCTTACACGTAATCTCATATAGATGAC
Found at i:78110827 original size:55 final size:55
Alignment explanation
Indices: 78110762--78110873 Score: 197
Period size: 55 Copynumber: 2.0 Consensus size: 55
78110752 AAAAGAGATT
*
78110762 ATGGTAACGTTCTCATAATTTTCTCTACCTCATCAAAGAGTCCTTTTCGAGGGCA
1 ATGGTAACGTTCTCATAATTTTCTCTACCTCATCAAAGAGTCCTCTTCGAGGGCA
**
78110817 ATGGTAACGTTCTTGTAATTTTCTCTACCTCATCAAAGAGTCCTCTTCGAGGGCA
1 ATGGTAACGTTCTCATAATTTTCTCTACCTCATCAAAGAGTCCTCTTCGAGGGCA
78110872 AT
1 AT
78110874 ACTTTCAAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (55 bp):
ATGGTAACGTTCTCATAATTTTCTCTACCTCATCAAAGAGTCCTCTTCGAGGGCA
Found at i:78113159 original size:66 final size:68
Alignment explanation
Indices: 78113083--78113269 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
78113073 TAGTACCACT
*
78113083 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
78113145 CACG
65 CACG
78113149 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
78113214 ATCACG
63 ATCACG
78113220 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
78113270 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:78113194 original size:71 final size:71
Alignment explanation
Indices: 78113106--78113269 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78113096 CGATTTGTCT
78113106 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78113171 CTTTCA
66 CTTTCA
78113177 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78113242 CTTTCA
66 CTTTCA
78113248 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78113270 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78113307 original size:71 final size:70
Alignment explanation
Indices: 78113106--78113303 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
78113096 CGATTTGTCT
* * *
78113106 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
78113171 CTTTCA
65 CTTTCA
* * *
78113177 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
78113242 CTTTCA
65 CTTTCA
* *
78113248 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
78113304 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78120216 original size:66 final size:68
Alignment explanation
Indices: 78120140--78120326 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
78120130 TAGTACCACT
*
78120140 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
78120202 CACG
65 CACG
78120206 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
78120271 ATCACG
63 ATCACG
78120277 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
78120327 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:78120251 original size:71 final size:71
Alignment explanation
Indices: 78120163--78120326 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78120153 CGATTTGTCT
78120163 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78120228 CTTTCA
66 CTTTCA
78120234 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78120299 CTTTCA
66 CTTTCA
78120305 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78120327 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78120364 original size:71 final size:70
Alignment explanation
Indices: 78120163--78120360 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
78120153 CGATTTGTCT
* * *
78120163 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
78120228 CTTTCA
65 CTTTCA
* * *
78120234 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
78120299 CTTTCA
65 CTTTCA
* *
78120305 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
78120361 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78122846 original size:19 final size:20
Alignment explanation
Indices: 78122822--78122859 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
78122812 GGTACCACCA
78122822 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
78122841 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
78122860 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:78125450 original size:18 final size:18
Alignment explanation
Indices: 78125429--78125538 Score: 123
Period size: 18 Copynumber: 6.1 Consensus size: 18
78125419 AGTCACTCTT
78125429 TAACAGTCAGTTATTCAG
1 TAACAGTCAGTTATTCAG
* *
78125447 TAAC-GATAAATTATTCAG
1 TAACAG-TCAGTTATTCAG
* *
78125465 TAACAGTCAATTATTTAG
1 TAACAGTCAGTTATTCAG
* * *
78125483 TAGCAATCAGTTATCCAG
1 TAACAGTCAGTTATTCAG
*
78125501 TAACAATCAGTTATTCAG
1 TAACAGTCAGTTATTCAG
*
78125519 TAGCAGTCAGTTATTCAG
1 TAACAGTCAGTTATTCAG
78125537 TA
1 TA
78125539 CCTTTATTTA
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
17 1 0.01
18 75 0.97
19 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (18 bp):
TAACAGTCAGTTATTCAG
Found at i:78125493 original size:54 final size:54
Alignment explanation
Indices: 78125435--78125538 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
78125425 TCTTTAACAG
* * *
78125435 TCAGTTATTCAGTAACGATAAATTATTCAGTAACAGTCAATTATTTAGTAGCAA
1 TCAGTTATCCAGTAACAATAAATTATTCAGTAACAGTCAATTATTCAGTAGCAA
* * * *
78125489 TCAGTTATCCAGTAACAATCAGTTATTCAGTAGCAGTCAGTTATTCAGTA
1 TCAGTTATCCAGTAACAATAAATTATTCAGTAACAGTCAATTATTCAGTA
78125539 CCTTTATTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (54 bp):
TCAGTTATCCAGTAACAATAAATTATTCAGTAACAGTCAATTATTCAGTAGCAA
Found at i:78125521 original size:36 final size:36
Alignment explanation
Indices: 78125429--78125538 Score: 139
Period size: 36 Copynumber: 3.1 Consensus size: 36
78125419 AGTCACTCTT
* * * *
78125429 TAACAGTCAGTTATTCAGTAACGATAAATTATTCAG
1 TAACAGTCAGTTATTCAGTAGCAATCAGTTATTCAG
* * *
78125465 TAACAGTCAATTATTTAGTAGCAATCAGTTATCCAG
1 TAACAGTCAGTTATTCAGTAGCAATCAGTTATTCAG
* *
78125501 TAACAATCAGTTATTCAGTAGCAGTCAGTTATTCAG
1 TAACAGTCAGTTATTCAGTAGCAATCAGTTATTCAG
78125537 TA
1 TA
78125539 CCTTTATTTA
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 62 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (36 bp):
TAACAGTCAGTTATTCAGTAGCAATCAGTTATTCAG
Found at i:78126524 original size:12 final size:11
Alignment explanation
Indices: 78126484--78126524 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
78126474 TTAATATTTA
78126484 AATTTCTTATTC
1 AATTTC-TATTC
78126496 AATTTCTATTC
1 AATTTCTATTC
*
78126507 AATTTCTACTTT
1 AATTTCTA-TTC
78126519 AATTTC
1 AATTTC
78126525 AATTTTGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 13 0.48
12 14 0.52
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.56
Consensus pattern (11 bp):
AATTTCTATTC
Done.