Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 263 of 770
Found at i:79051653 original size:23 final size:23
Alignment explanation
Indices: 79051586--79051646 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 23
79051576 TGCTTTTTTA
79051586 ACAAAAGAAAA-ACAAAAAG--AT
1 ACAAAAGAAAAGA-AAAAAGAAAT
79051607 GA-AAAAGAAAAGAAAAAAGAAAT
1 -ACAAAAGAAAAGAAAAAAGAAAT
*
79051630 ACAAAAGTAAAATAAAA
1 ACAAAAG-AAAAGAAAA
79051647 TAAAATAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
21 15 0.45
22 3 0.09
23 7 0.21
24 8 0.24
ACGTcount: A:0.77, C:0.05, G:0.11, T:0.07
Consensus pattern (23 bp):
ACAAAAGAAAAGAAAAAAGAAAT
Found at i:79051657 original size:15 final size:16
Alignment explanation
Indices: 79051632--79051661 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
79051622 AAAGAAATAC
79051632 AAAAGTAAAATAAAAT
1 AAAAGTAAAATAAAAT
79051648 AAAA-TAAAATAAAA
1 AAAAGTAAAATAAAA
79051662 GACCACCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (16 bp):
AAAAGTAAAATAAAAT
Found at i:79059348 original size:39 final size:39
Alignment explanation
Indices: 79059294--79059372 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
79059284 GCCAGGTTTT
79059294 CCAAACTATTGGATGGTTCAACTTAGATTGGTTCTTGAA
1 CCAAACTATTGGATGGTTCAACTTAGATTGGTTCTTGAA
79059333 CCAAACTATTGGATGGTTCAACTTAGATTGGTTCTTGAA
1 CCAAACTATTGGATGGTTCAACTTAGATTGGTTCTTGAA
79059372 C
1 C
79059373 TTATTGGATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.35
Consensus pattern (39 bp):
CCAAACTATTGGATGGTTCAACTTAGATTGGTTCTTGAA
Found at i:79063311 original size:114 final size:115
Alignment explanation
Indices: 79063117--79063336 Score: 284
Period size: 114 Copynumber: 1.9 Consensus size: 115
79063107 TGAAAAAACA
* * * *
79063117 CCGCTAAAAGATTAAGCCGAACGACATCGTTTATTTTGAGCTTTAGTGGCATTAACGGCGCTTAA
1 CCGCTAAAAGATTAAGCCAAACGACATCGTTTACTTTGAGATTTAGTGGCATTAACGGCACTTAA
*
79063182 TAAAAAACACTGCAATAG-TTGAGCT-TTAGCGGCG-TTTTTCAAAAAGCG
66 TAAAAAACACCGCAATAGATTGAG-TATTAGCGGCGCTTTTTCAAAAAGCG
* * * *
79063230 CCGCTAAAAGATTAAGCCAAACGACGTCATTTTACTTTGAGATTTAGTGGCATTAGCGGCACTTT
1 CCGCTAAAAGATTAAGCCAAACGACATC-GTTTACTTTGAGATTTAGTGGCATTAACGGCACTTA
* ** *
79063295 GTCGAAAACGCCGCAATAGATTGAGTATTAGCGGCGCTTTTT
65 ATAAAAAACACCGCAATAGATTGAGTATTAGCGGCGCTTTTT
79063337 GAAACACACC
Statistics
Matches: 90, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
113 26 0.29
114 45 0.50
115 14 0.16
116 5 0.06
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (115 bp):
CCGCTAAAAGATTAAGCCAAACGACATCGTTTACTTTGAGATTTAGTGGCATTAACGGCACTTAA
TAAAAAACACCGCAATAGATTGAGTATTAGCGGCGCTTTTTCAAAAAGCG
Found at i:79063951 original size:14 final size:15
Alignment explanation
Indices: 79063929--79063973 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
79063919 AAACACTAGA
*
79063929 CCTTAACCCATAAAT
1 CCTTAACCCATAAAC
*
79063944 CC-TAACCCATTAAC
1 CCTTAACCCATAAAC
79063958 CCTTAAACCCATAAAC
1 CCTT-AACCCATAAAC
79063974 TATAAGCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 12 0.48
15 3 0.12
16 10 0.40
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.22
Consensus pattern (15 bp):
CCTTAACCCATAAAC
Found at i:79064028 original size:22 final size:22
Alignment explanation
Indices: 79063991--79064044 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
79063981 TTTAAATCTC
79063991 AAAC-CTTAAACTATAAACCCT
1 AAACTCTTAAACTATAAACCCT
79064012 AAACTCTTAAA-TCATAAACCCT
1 AAACTCTTAAACT-ATAAACCCT
*
79064034 AAAATCTTAAA
1 AAACTCTTAAA
79064045 AATAAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 5 0.17
22 25 0.83
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (22 bp):
AAACTCTTAAACTATAAACCCT
Found at i:79064535 original size:35 final size:34
Alignment explanation
Indices: 79064474--79064545 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 34
79064464 TAAGGGTTAA
*
79064474 GGTTTAAAATTTAGGTTCAAGGTTTAGGGTATTG
1 GGTTCAAAATTTAGGTTCAAGGTTTAGGGTATTG
* *
79064508 GGTTCAAAATTTAGTTTATAAGGTTTAGGGTATTG
1 GGTTCAAAATTTAGGTT-CAAGGTTTAGGGTATTG
79064543 GGT
1 GGT
79064546 ATTGGGTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 15 0.44
35 19 0.56
ACGTcount: A:0.26, C:0.03, G:0.29, T:0.42
Consensus pattern (34 bp):
GGTTCAAAATTTAGGTTCAAGGTTTAGGGTATTG
Found at i:79064573 original size:21 final size:21
Alignment explanation
Indices: 79064517--79064626 Score: 81
Period size: 21 Copynumber: 5.5 Consensus size: 21
79064507 GGGTTCAAAA
* *
79064517 TTTAGTTTATAAGGTTTAGGG
1 TTTAGTCTATAGGGTTTAGGG
** *
79064538 TATT-GGGTATTGGGTTTAGGG
1 T-TTAGTCTATAGGGTTTAGGG
79064559 TTTAGTCTATAGGGTTTA---
1 TTTAGTCTATAGGGTTTAGGG
79064577 --TAGTCTATAGGGTTTAGGG
1 TTTAGTCTATAGGGTTTAGGG
* * *
79064596 TATT-GTGTATTGGGTTTAGCG
1 T-TTAGTCTATAGGGTTTAGGG
79064617 TTTAGTCTAT
1 TTTAGTCTAT
79064627 TGGTTTTGGG
Statistics
Matches: 69, Mismatches: 11, Indels: 18
0.70 0.11 0.18
Matches are distributed among these distances:
16 16 0.23
20 4 0.06
21 46 0.67
22 3 0.04
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (21 bp):
TTTAGTCTATAGGGTTTAGGG
Found at i:79064582 original size:16 final size:16
Alignment explanation
Indices: 79064561--79064592 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
79064551 GTTTAGGGTT
79064561 TAGTCTATAGGGTTTA
1 TAGTCTATAGGGTTTA
79064577 TAGTCTATAGGGTTTA
1 TAGTCTATAGGGTTTA
79064593 GGGTATTGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.25, T:0.44
Consensus pattern (16 bp):
TAGTCTATAGGGTTTA
Found at i:79067502 original size:79 final size:80
Alignment explanation
Indices: 79067359--79067566 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
79067349 ACCTTCGGAG
* * ** * * * *
79067359 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
79067423 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
79067438 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
79067500 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
79067517 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
79067567 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:79067511 original size:40 final size:40
Alignment explanation
Indices: 79067459--79067566 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
79067449 TATCACGATT
** *
79067459 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
79067499 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
79067539 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
79067567 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:79075607 original size:39 final size:40
Alignment explanation
Indices: 79075545--79075648 Score: 113
Period size: 40 Copynumber: 2.6 Consensus size: 40
79075535 CCGCACCAAG
* * * *
79075545 GCCTACGGGACTTAACCCGGATATCA-CGA-TTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATAT-AGCCACTAGCACAAAT
* * *
79075584 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACCATT
1 GCCTTCGGGTCTTAACCCGGATATAGCCACTAGCACAAAT
*
79075624 GCCTTCGGGTCTTAACCCGGTTATA
1 GCCTTCGGGTCTTAACCCGGATATA
79075649 ATTTCCAGCA
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
38 1 0.02
39 23 0.43
40 30 0.56
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAACCCGGATATAGCCACTAGCACAAAT
Found at i:79080806 original size:47 final size:47
Alignment explanation
Indices: 79080753--79081151 Score: 644
Period size: 47 Copynumber: 8.6 Consensus size: 47
79080743 TATTTGAATA
79080753 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
79080800 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
79080847 AATGTGAAAGTATATCTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
79080894 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA--TG-TG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
79080938 -ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
79080984 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
79081031 AATGTGAAAGTGTATATATTTGATAAGGCCGAATGGCCAATGTGACG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
79081078 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
79081125 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
79081152 TCCCGAAGGG
Statistics
Matches: 330, Mismatches: 18, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
43 39 0.12
44 2 0.01
45 4 0.01
46 2 0.01
47 283 0.86
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:79081068 original size:184 final size:187
Alignment explanation
Indices: 79080754--79081151 Score: 658
Period size: 184 Copynumber: 2.1 Consensus size: 187
79080744 ATTTGAATAA
79080754 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
79080819 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTATATCTATGTGATAAGGCCTAATGGC
66 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATGGC
* * * *
79080884 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-TG-T-G
131 CAATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACTGATGG
79080938 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * *
79081003 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATTTGATAAGGCCGAATGGC
66 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATGGC
* *
79081068 CAATGTGACGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGG
131 CAATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAC-TGATGG
*
79081126 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
79081152 TCCCGAAGGG
Statistics
Matches: 198, Mismatches: 12, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
184 169 0.85
186 2 0.01
187 1 0.01
188 26 0.13
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (187 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATGGC
CAATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACTGATGG
Found at i:79081206 original size:48 final size:48
Alignment explanation
Indices: 79081154--79081267 Score: 165
Period size: 48 Copynumber: 2.4 Consensus size: 48
79081144 GTGATAAGTC
* * *
79081154 CCGAAGGGCCAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
1 CCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAG
* * * *
79081202 CCGAATAGCTAATATGAAATATATGTGTGATATGTATATGTGGTAAAG
1 CCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAG
79081250 CCGAATGGCTAATGTGAA
1 CCGAATGGCTAATGTGAA
79081268 TGTTGTACCA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (48 bp):
CCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAG
Found at i:79083564 original size:40 final size:40
Alignment explanation
Indices: 79083519--79083686 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
79083509 CGGAATACAA
79083519 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
79083559 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
79083599 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
79083639 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
79083679 CCGGATAT
1 CCGGATAT
79083687 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:79085609 original size:29 final size:29
Alignment explanation
Indices: 79085576--79085706 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
79085566 GTGACGAGAT
79085576 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
79085605 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
79085634 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
79085663 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
79085692 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
79085707 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:79090664 original size:25 final size:25
Alignment explanation
Indices: 79090630--79090681 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
79090620 GGATTCGGAA
79090630 CTTGTTTCGATGATTTTGAACGAGG
1 CTTGTTTCGATGATTTTGAACGAGG
*
79090655 CTTGTTTCGATGATTTTGAGCGAGG
1 CTTGTTTCGATGATTTTGAACGAGG
79090680 CT
1 CT
79090682 CACAGTAGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.17, C:0.13, G:0.29, T:0.40
Consensus pattern (25 bp):
CTTGTTTCGATGATTTTGAACGAGG
Found at i:79092675 original size:40 final size:40
Alignment explanation
Indices: 79092567--79092736 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
79092557 CGGGATTTAA
* * * * *
79092567 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
79092607 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79092647 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79092687 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79092727 CCGGATATAT
1 CCGGATATAT
79092737 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79100766 original size:40 final size:40
Alignment explanation
Indices: 79100658--79100867 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
79100648 CGGGATTTAA
* * * * *
79100658 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
79100698 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79100738 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79100778 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79100818 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79100858 CCGGATATAT
1 CCGGATATAT
79100868 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79107353 original size:13 final size:13
Alignment explanation
Indices: 79107335--79107361 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79107325 TAACCAAGGG
79107335 AACCAAAAGTACT
1 AACCAAAAGTACT
79107348 AACCAAAAGTACT
1 AACCAAAAGTACT
79107361 A
1 A
79107362 GTAATAACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.22, G:0.07, T:0.15
Consensus pattern (13 bp):
AACCAAAAGTACT
Found at i:79112155 original size:13 final size:13
Alignment explanation
Indices: 79112137--79112163 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79112127 TTGCCACGGC
79112137 CGTGTTGTACGAT
1 CGTGTTGTACGAT
79112150 CGTGTTGTACGAT
1 CGTGTTGTACGAT
79112163 C
1 C
79112164 ATGTCTAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.19, G:0.30, T:0.37
Consensus pattern (13 bp):
CGTGTTGTACGAT
Found at i:79112234 original size:20 final size:20
Alignment explanation
Indices: 79112186--79112237 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
79112176 GTTCGCTTCT
*
79112186 CCCACGCCAGTGTGTTCTAC
1 CCCACGCCCGTGTGTTCTAC
*
79112206 CCCACGCCCGTTTGTTCTAC
1 CCCACGCCCGTGTGTTCTAC
79112226 CCCACGCCCGTG
1 CCCACGCCCGTG
79112238 GACATTTGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.12, C:0.46, G:0.19, T:0.23
Consensus pattern (20 bp):
CCCACGCCCGTGTGTTCTAC
Found at i:79115725 original size:24 final size:24
Alignment explanation
Indices: 79115698--79115768 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
79115688 ATCATAGAAA
79115698 GTGTACAT-TGGCACTATGTGTGCG
1 GTGTA-ATATGGCACTATGTGTGCG
*
79115722 GTGTAGTATGGCACTATGTGTGCG
1 GTGTAATATGGCACTATGTGTGCG
*
79115746 GAGTTGAATA--GCACTATGTGTGC
1 GTG-T-AATATGGCACTATGTGTGC
79115769 TGATTTGAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 1 0.02
24 36 0.88
25 1 0.02
26 3 0.07
ACGTcount: A:0.20, C:0.14, G:0.34, T:0.32
Consensus pattern (24 bp):
GTGTAATATGGCACTATGTGTGCG
Found at i:79115789 original size:26 final size:24
Alignment explanation
Indices: 79115708--79115778 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 24
79115698 GTGTACATTG
* * * *
79115708 GCACTATGTGTGCGGTGTAGTATG
1 GCACTATGTGTGCGGAGTTGAATA
79115732 GCACTATGTGTGCGGAGTTGAATA
1 GCACTATGTGTGCGGAGTTGAATA
* *
79115756 GCACTATGTGTGCTGATTTGAAT
1 GCACTATGTGTGCGGAGTTGAAT
79115779 GTCAACATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGAGTTGAATA
Found at i:79119925 original size:28 final size:28
Alignment explanation
Indices: 79119856--79119956 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
79119846 GACAAGATTG
* * * *
79119856 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
79119886 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
79119914 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
79119943 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79119957 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:79122530 original size:37 final size:37
Alignment explanation
Indices: 79122471--79122579 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
79122461 AGCTCAGACG
* * *
79122471 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
79122508 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
79122545 TAATCTCCACACATAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79122580 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79122863 original size:50 final size:50
Alignment explanation
Indices: 79122728--79122874 Score: 226
Period size: 50 Copynumber: 3.0 Consensus size: 50
79122718 CATCGCCTAC
*
79122728 ATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACA-TAGACCATTCGGCTTTACCACATATGCATATCTCATATAT
*
79122778 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATAGACCATTCGGCTTTACCACATATGCATATCTCATATAT
* * *
79122828 ATATTTCACATGGACCATTCGGATTTACCACATATGCATGT-TCATAT
1 ATATTTCACATAGACCATTCGGCTTTACCACATATGCATATCTCATAT
79122875 TCACCACATT
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
49 8 0.09
50 83 0.91
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.37
Consensus pattern (50 bp):
ATATTTCACATAGACCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:79122924 original size:47 final size:47
Alignment explanation
Indices: 79122856--79122977 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
79122846 TCGGATTTAC
* *
79122856 CACATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCA
1 CACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
*
79122903 CACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCA
1 CACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
*
79122950 CATATATGCATGTTCACATTCATCACAT
1 CACATATGCATGTTCACATTCATCACAT
79122978 AAAATCCAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
CACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
Found at i:79130905 original size:24 final size:24
Alignment explanation
Indices: 79130878--79130948 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
79130868 ATCATAGAAA
79130878 GTGTACAT-TGGCACTATGTGTGCG
1 GTGTA-ATATGGCACTATGTGTGCG
*
79130902 GTGTAGTATGGCACTATGTGTGCG
1 GTGTAATATGGCACTATGTGTGCG
*
79130926 GAGTTGAATA--GCACTATGTGTGC
1 GTG-T-AATATGGCACTATGTGTGC
79130949 TGATTTGAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 1 0.02
24 36 0.88
25 1 0.02
26 3 0.07
ACGTcount: A:0.20, C:0.14, G:0.34, T:0.32
Consensus pattern (24 bp):
GTGTAATATGGCACTATGTGTGCG
Found at i:79130969 original size:26 final size:24
Alignment explanation
Indices: 79130888--79130958 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 24
79130878 GTGTACATTG
* * * *
79130888 GCACTATGTGTGCGGTGTAGTATG
1 GCACTATGTGTGCGGAGTTGAATA
79130912 GCACTATGTGTGCGGAGTTGAATA
1 GCACTATGTGTGCGGAGTTGAATA
* *
79130936 GCACTATGTGTGCTGATTTGAAT
1 GCACTATGTGTGCGGAGTTGAAT
79130959 GTCAACATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGAGTTGAATA
Found at i:79143198 original size:22 final size:19
Alignment explanation
Indices: 79143167--79143213 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
79143157 AAAGATGATA
79143167 ATTATTAATATATAATTATATCT
1 ATTA-TAATATAT-ATTA-AT-T
79143190 ATTATAATATATATTAATT
1 ATTATAATATATATTAATT
79143209 ATTAT
1 ATTAT
79143214 CAACTTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 4 0.17
22 8 0.33
23 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATAATATATATTAATT
Found at i:79143209 original size:16 final size:15
Alignment explanation
Indices: 79143169--79143210 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
79143159 AGATGATAAT
79143169 TATTAATATATAATTA
1 TATTAAT-TATAATTA
79143185 TATCT-ATTATAATATA
1 TAT-TAATTATAAT-TA
79143201 TATTAATTAT
1 TATTAATTAT
79143211 TATCAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 15 0.65
17 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:79145662 original size:71 final size:72
Alignment explanation
Indices: 79145580--79145741 Score: 238
Period size: 71 Copynumber: 2.3 Consensus size: 72
79145570 CATCATGTGT
* * * **
79145580 ACAAGAAAGCTACGAGACACCCTGTA-GTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
79145644 CATGTAG
66 CATGTAG
* * *
79145651 ACAAGAGAGCTACGTGA-AAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
79145715 CATGTAG
66 CATGTAG
79145722 ACAAGAGAGCTACGAGACAA
1 ACAAGAGAGCTACGAGACAA
79145742 ATCGGTTAGG
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
70 3 0.04
71 75 0.94
72 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.17
Consensus pattern (72 bp):
ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
CATGTAG
Found at i:79145932 original size:14 final size:15
Alignment explanation
Indices: 79145913--79145946 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
79145903 CCTACACTTA
79145913 TGGTG-AATGAAATG
1 TGGTGAAATGAAATG
79145927 TGGTGAAAATGAAATG
1 TGGTG-AAATGAAATG
79145943 TGGT
1 TGGT
79145947 ATATACATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
16 13 0.72
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (15 bp):
TGGTGAAATGAAATG
Found at i:79148344 original size:58 final size:58
Alignment explanation
Indices: 79148274--79148396 Score: 221
Period size: 58 Copynumber: 2.1 Consensus size: 58
79148264 CTAGCAGGCT
* *
79148274 ATAAT-TCCGGTGAAATAATATCGTGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAA
1 ATAATATCAGGTGAAATAATATCGGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAA
79148331 ATAATATCAGGTGAAATAATATCGGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAA
1 ATAATATCAGGTGAAATAATATCGGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAA
79148389 ATAATATC
1 ATAATATC
79148397 GGGCTTCAAG
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
57 5 0.08
58 58 0.92
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (58 bp):
ATAATATCAGGTGAAATAATATCGGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAA
Found at i:79148345 original size:15 final size:15
Alignment explanation
Indices: 79148325--79148353 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
79148315 CTATAATGCC
79148325 GGTGAAATAATATCA
1 GGTGAAATAATATCA
79148340 GGTGAAATAATATC
1 GGTGAAATAATATC
79148354 GGGCCTCGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.28
Consensus pattern (15 bp):
GGTGAAATAATATCA
Found at i:79148393 original size:43 final size:43
Alignment explanation
Indices: 79148340--79148431 Score: 132
Period size: 43 Copynumber: 2.1 Consensus size: 43
79148330 AATAATATCA
* *
79148340 GGTGAAATAATATCGGGCCTCGAGCCTAGCAGGCTATAATGCC-
1 GGTGAAATAATATCGGGCCTCAAGCCTAGCAGGCGA-AATGCCG
* *
79148383 GGTGAAATAATATCGGGCTTCAAGCCTAGTAGGCGAAATGCCG
1 GGTGAAATAATATCGGGCCTCAAGCCTAGCAGGCGAAATGCCG
79148426 GGTGAA
1 GGTGAA
79148432 TGAATTTAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 6 0.14
43 38 0.86
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (43 bp):
GGTGAAATAATATCGGGCCTCAAGCCTAGCAGGCGAAATGCCG
Found at i:79149711 original size:26 final size:24
Alignment explanation
Indices: 79149678--79149735 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 24
79149668 TTTTTCTCCT
79149678 AAATTTTAATTTTATTTAATAATTTA
1 AAATTTTAA-TTTATTTAATAA-TTA
*
79149704 AAATTTTAATTTATTTAATTATTA
1 AAATTTTAATTTATTTAATAATTA
*
79149728 ATATTTTA
1 AAATTTTA
79149736 TATTAATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 10 0.33
25 11 0.37
26 9 0.30
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
AAATTTTAATTTATTTAATAATTA
Found at i:79159996 original size:23 final size:23
Alignment explanation
Indices: 79159970--79160018 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
79159960 TCTATGATTG
79159970 CAGCCTCGATAACGAAGCTATTA
1 CAGCCTCGATAACGAAGCTATTA
79159993 CAGCCTCGATAACGAAGCTATTA
1 CAGCCTCGATAACGAAGCTATTA
79160016 CAG
1 CAG
79160019 AAAGATGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (23 bp):
CAGCCTCGATAACGAAGCTATTA
Found at i:79162254 original size:55 final size:53
Alignment explanation
Indices: 79162146--79162341 Score: 200
Period size: 55 Copynumber: 3.6 Consensus size: 53
79162136 ATTAGGGTTC
** * *
79162146 AAGGATACCATGTAAGACCATG-CTAAGGTATGGAAATTGGTAAGGTTTC-TAAGGA
1 AAGGATACCATGTAAGACCATGTC-AAGACATGG-CATTGATAA-G-TTCATAAGGA
* *
79162201 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGG-A
* * * * * *
79162257 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGA
79162309 AAGGATACCATGTAAGACCATGTCAAGACATGG
1 AAGGATACCATGTAAGACCATGTCAAGACATGG
79162342 TGTGACATCC
Statistics
Matches: 118, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
52 6 0.05
53 33 0.28
54 8 0.07
55 65 0.55
56 6 0.05
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGA
Found at i:79164039 original size:29 final size:28
Alignment explanation
Indices: 79163972--79164043 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
79163962 AAAATTGTAC
* * *
79163972 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
79164000 AGCACTAAGTGTGCGAG-CTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG--AATATAT
79164029 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79164044 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:79165715 original size:16 final size:16
Alignment explanation
Indices: 79165694--79165724 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79165684 ATAAATTTGA
79165694 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
79165710 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
79165725 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:79168515 original size:26 final size:26
Alignment explanation
Indices: 79168465--79168517 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
79168455 AATGGTAGTC
*
79168465 AAATGTTAAATATATATGTTGTTATG
1 AAATGTTAAATATATATATTGTTATG
79168491 AAATGTTAGAAT-T-TATATTGCTTATG
1 AAATGTTA-AATATATATATTG-TTATG
79168517 A
1 A
79168518 CTAAATATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 6 0.25
26 15 0.62
27 3 0.12
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.45
Consensus pattern (26 bp):
AAATGTTAAATATATATATTGTTATG
Found at i:79171517 original size:48 final size:48
Alignment explanation
Indices: 79171461--79171557 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 48
79171451 TGGTTGGATT
** * *
79171461 CCAATGCCATATCCTGGATATGGTCTTACATAGGATTACATATCAATG
1 CCAATGCCATATCCCAGACATGGTCTTACATAGGATCACATATCAATG
* * *
79171509 CCAATGCCATGTCCCAGACATGGTCTTACCTGGGATCACATATCAATG
1 CCAATGCCATATCCCAGACATGGTCTTACATAGGATCACATATCAATG
79171557 C
1 C
79171558 TGATAACCCA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (48 bp):
CCAATGCCATATCCCAGACATGGTCTTACATAGGATCACATATCAATG
Found at i:79184048 original size:28 final size:27
Alignment explanation
Indices: 79184008--79184077 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 27
79183998 ATAGTAAGTC
79184008 CGCACACTTAGTGCTTAAT-AATCAAACT
1 CGCACACTTAGTGC-T-ATCAATCAAACT
*
79184036 CGCACACTTAGTGCTATGCAATTAAACT
1 CGCACACTTAGTGCTAT-CAATCAAACT
79184064 CGCACACTTAGTGC
1 CGCACACTTAGTGC
79184078 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 2 0.05
27 1 0.03
28 36 0.92
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATCAATCAAACT
Found at i:79185518 original size:29 final size:29
Alignment explanation
Indices: 79185457--79185604 Score: 235
Period size: 29 Copynumber: 5.1 Consensus size: 29
79185447 ACATACATGT
* * *
79185457 ATATGGGCCACTAGGCCC-AATCTCATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
79185485 ATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
79185514 GTATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
79185543 ATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
79185572 ATATGGCCTATTAGGCCCAAATCACGTTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
79185601 ATAT
1 ATAT
79185605 TCATACTTTC
Statistics
Matches: 112, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
28 16 0.14
29 96 0.86
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:79189989 original size:29 final size:29
Alignment explanation
Indices: 79189924--79190042 Score: 168
Period size: 29 Copynumber: 4.1 Consensus size: 29
79189914 ACATACATGT
* *
79189924 ATATGGCCCACTAGGCCC-AATCTCATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
79189952 ATATGGCCCATTAGGCCCAAGTCATATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
79189981 GTATGGCCCATTAGGCCGAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
79190010 ATATGGCCCATTAGGTCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
79190039 ATAT
1 ATAT
79190043 TCATGCTTTC
Statistics
Matches: 79, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 17 0.22
29 62 0.78
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:79192002 original size:29 final size:29
Alignment explanation
Indices: 79191969--79192041 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
79191959 ATGACGAGAT
79191969 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
79191998 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
79192027 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
79192042 GAGCTCGAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:79192057 original size:29 final size:29
Alignment explanation
Indices: 79192025--79192101 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
79192015 GCTGGAAATA
* *
79192025 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
** * * *
79192054 TATGGCACTGTGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
*
79192083 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
79192102 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.18, G:0.35, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCAAAGCG
Found at i:79192058 original size:58 final size:59
Alignment explanation
Indices: 79191969--79192101 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
79191959 ATGACGAGAT
* * *
79191969 TGGCACTAAGTGTGC-ATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCT-GAAATCACA
*** * * * *
79192027 TGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
79192085 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
79192102 AATCGAGTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.25
Consensus pattern (59 bp):
TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
Found at i:79201164 original size:23 final size:23
Alignment explanation
Indices: 79201137--79201180 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
79201127 TAAACTTATT
*
79201137 CACTTTAATTTTAAATTAATATA
1 CACTTTAATATTAAATTAATATA
79201160 CACTTTAATATTAAATTAATA
1 CACTTTAATATTAAATTAATA
79201181 AAATATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (23 bp):
CACTTTAATATTAAATTAATATA
Found at i:79203390 original size:46 final size:44
Alignment explanation
Indices: 79203278--79203401 Score: 160
Period size: 46 Copynumber: 2.7 Consensus size: 44
79203268 TGTGTGTGCT
* *
79203278 AGTGTAAGACATGTCTGGGACATGTATCGGCCACATTATGAAATGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-G--ACATTAAGAAATGCC
79203325 AGTGTAAGACATGTCTGGGACATGCATCGACATTAAGACGAGA-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACATTAAGA--A-ATGCC
*
79203371 AGTGTAAGACATGTTTGGGACATGCATCGAC
1 AGTGTAAGACATGTCTGGGACATGCATCGAC
79203402 TACGAGATGT
Statistics
Matches: 71, Mismatches: 3, Indels: 7
0.88 0.04 0.09
Matches are distributed among these distances:
44 8 0.11
46 35 0.49
47 28 0.39
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATTAAGAAATGCC
Found at i:79207569 original size:68 final size:70
Alignment explanation
Indices: 79207497--79207694 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
79207487 ACACCCTGTA
* * * *
79207497 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
79207559 ATAAAT
65 ATAAAT
*
79207565 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
79207630 ATAAAT
65 ATAAAT
*
79207636 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
79207695 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:79207608 original size:41 final size:41
Alignment explanation
Indices: 79207563--79207680 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
79207553 TGAAAGATAA
79207563 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
79207604 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79207634 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79207675 ATGTAG
1 ATGTAG
79207681 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:79207620 original size:71 final size:71
Alignment explanation
Indices: 79207531--79207694 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
79207521 GAGATGTATC
79207531 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79207596 AGGACA
66 AGGACA
79207602 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79207667 AGGACA
66 AGGACA
79207673 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
79207695 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:79215131 original size:68 final size:70
Alignment explanation
Indices: 79215059--79215256 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
79215049 ACACCCTGTA
* * * *
79215059 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
79215121 ATAAAT
65 ATAAAT
*
79215127 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
79215192 ATAAAT
65 ATAAAT
*
79215198 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
79215257 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:79215170 original size:41 final size:41
Alignment explanation
Indices: 79215125--79215242 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
79215115 TGAAAGATAA
79215125 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
79215166 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79215196 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
79215237 ATGTAG
1 ATGTAG
79215243 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:79215182 original size:71 final size:71
Alignment explanation
Indices: 79215093--79215256 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
79215083 GAGATGTATC
79215093 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79215158 AGGACA
66 AGGACA
79215164 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79215229 AGGACA
66 AGGACA
79215235 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
79215257 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:79218947 original size:14 final size:14
Alignment explanation
Indices: 79218928--79218965 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
79218918 AGTGCATAAA
*
79218928 AATTTTGGTGAATT
1 AATTTTGGCGAATT
79218942 AATTTTGGCGAATT
1 AATTTTGGCGAATT
79218956 AATTTTGGCG
1 AATTTTGGCG
79218966 TTTGAGTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (14 bp):
AATTTTGGCGAATT
Found at i:79219657 original size:30 final size:30
Alignment explanation
Indices: 79219623--79219679 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
79219613 TTTACGAGCC
*
79219623 TAGGGGCAAAAGTATAATTTTGGCAAAGTT
1 TAGGGGCAAAAGTATAAATTTGGCAAAGTT
* *
79219653 TAGGGGCAAAATTATAAATTTGTCAAA
1 TAGGGGCAAAAGTATAAATTTGGCAAA
79219680 ATATGATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTATAAATTTGGCAAAGTT
Found at i:79220450 original size:49 final size:48
Alignment explanation
Indices: 79220389--79220515 Score: 150
Period size: 47 Copynumber: 2.6 Consensus size: 48
79220379 TGAGAGCTAG
* * * *
79220389 TGTAAGACCATGTCTGGGAGATGGCGTCGACCTCGATTTTGAT-AGTCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGACCTCGA--TGGATGAGCCAA
* * *
79220438 TGTAAGACCATGTCTAGGACATGGCATCGA-CTTGATGGATGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGGATGAGCCAA
*
79220485 TGTAAGACCATGTTTGGGACATGGCATCGAC
1 TGTAAGACCATGTCTGGGACATGGCATCGAC
79220516 ATTATACCCT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
46 4 0.06
47 32 0.48
48 4 0.06
49 27 0.40
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGGATGAGCCAA
Found at i:79220515 original size:96 final size:94
Alignment explanation
Indices: 79220200--79220515 Score: 258
Period size: 96 Copynumber: 3.3 Consensus size: 94
79220190 TGTGTGTGCT
* * * *
79220200 AGTGTAAGACATGCTTGGGACATGCATCGACCAC-ATTATGAAACG-CTAGTGTAAGA-CATGTC
1 AGTGTAAGACATGTTTGGGACATGCATCGACCTCGATTATGATA-GTC-AATGTAAGACCATGTC
* *
79220262 TGGGACAT-GCATCGGCATTGA-GACGAGAGCC
64 TAGGACATGGCATCGAC-TTGATGA-GAGAGCC
* * * * *
79220293 AGTGTAAGACATGTTTGGGACATGCATC-AACTACGA-GATG-T-GTTAGTATAAGACCATGTCT
1 AGTGTAAGACATGTTTGGGACATGCATCGACCT-CGATTATGATAGTCAATGTAAGACCATGTCT
* * * *
79220354 AGGACATGACATCGGAAC-GGATATGTGAGAGCT
65 AGGACATGGCATC-G-ACTTG--ATGAGAGAGCC
* * * *
79220387 AGTGTAAGACCATGTCTGGGAGATGGCGTCGACCTCGATTTTGATAGTCAATGTAAGACCATGTC
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGACCTCGATTATGATAGTCAATGTAAGACCATGTC
79220452 TAGGACATGGCATCGACTTGATG-GATGAGCC
64 TAGGACATGGCATCGACTTGATGAGA-GAGCC
79220483 AGTGTAAGACCATGTTTGGGACATGGCATCGAC
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGAC
79220516 ATTATACCCT
Statistics
Matches: 177, Mismatches: 28, Indels: 33
0.74 0.12 0.14
Matches are distributed among these distances:
90 9 0.05
91 13 0.07
92 7 0.04
93 32 0.18
94 18 0.10
95 15 0.08
96 44 0.25
97 7 0.04
98 3 0.02
99 29 0.16
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTTTGGGACATGCATCGACCTCGATTATGATAGTCAATGTAAGACCATGTCTA
GGACATGGCATCGACTTGATGAGAGAGCC
Found at i:79223297 original size:40 final size:39
Alignment explanation
Indices: 79223132--79223315 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
79223122 AAATTGAATG
* * *
79223132 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
79223172 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
79223212 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
79223252 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
79223291 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
79223316 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:79223340 original size:80 final size:81
Alignment explanation
Indices: 79223172--79223360 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
79223162 GCTGGAAATT
* * * *
79223172 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
79223237 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
79223253 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
79223316 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
79223332 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
79223361 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:79231389 original size:40 final size:39
Alignment explanation
Indices: 79231224--79231407 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
79231214 AAATTGAATG
* * *
79231224 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
79231264 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
79231304 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
79231344 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
79231383 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
79231408 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:79231432 original size:80 final size:81
Alignment explanation
Indices: 79231264--79231452 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
79231254 GCTGGAAATT
* * * *
79231264 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
79231329 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
79231345 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
79231408 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
79231424 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
79231453 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:79240779 original size:40 final size:40
Alignment explanation
Indices: 79240678--79240888 Score: 329
Period size: 40 Copynumber: 5.3 Consensus size: 40
79240668 TATTCGAATG
*
79240678 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
79240718 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
79240757 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
79240797 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
79240837 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
79240877 ATATCC-GGCTAA
1 ATATCCGGGCTAA
79240889 ATCTTGAAGG
Statistics
Matches: 158, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 44 0.28
40 112 0.71
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:79247548 original size:33 final size:33
Alignment explanation
Indices: 79247493--79247570 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
79247483 TGGCCCTACC
* *
79247493 ATGGTCTTACATTCGTAGTGCCATAACCTGGCT
1 ATGGTCTTACATTCGTAATGCCATAACCTAGCT
* *
79247526 ATGGTCTTATCATTTG-AATGCCATAGCCTAGCT
1 ATGGTCTTA-CATTCGTAATGCCATAACCTAGCT
79247559 ATGGTCTTACAT
1 ATGGTCTTACAT
79247571 ACAAATACTG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
32 3 0.08
33 32 0.80
34 5 0.12
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (33 bp):
ATGGTCTTACATTCGTAATGCCATAACCTAGCT
Found at i:79253340 original size:357 final size:352
Alignment explanation
Indices: 79252677--79253470 Score: 812
Period size: 348 Copynumber: 2.2 Consensus size: 352
79252667 TATTATTTTT
* **
79252677 AAATTGTGCTAATTTTATTGATGTAAAATAGAGTAATTA-TTAAATAGAATTCTAAGTTTTTTAA
1 AAATTGTGCTAATTTTATTGATGTAAAATAGAATAATTACTTAAATAGAATTCTAAGAATTTTAA
* ** * *
79252741 TTATTACTTAATTAATAATAATGTTATATACCAAATAAATTTTAAGTTAGCTTTATAAGTAATAT
66 TTA-T-C---ACT--T-AGCA--TTATATACCAAATAAATTTTAAGTTAGCTTCATAAATAATAT
** *
79252806 TCAATAGTTAGCATACTCAATCAAGGAACATTTTAAAAAATTACCGATAAAAAATGAATAGAACT
121 TCAATAGTTAGCATACTCAATCAAGGAACATTACAAAAAATTACAGATAAAAAATGAATAGAACT
* *
79252871 CTAAACATAAAAAAGAAAATACATAGCAAAAAATTGTGATAATTATAATTATAATTTAATTTACA
186 CTAAACAT-AAAAAGAAAATACATA-CAAAAAATTCTAATAATTATAATTATAATTTAATTTACA
* *
79252936 GTTATTAATTAAAAAATTGTATGTACAAAATATGATAATTATAATTTAATTTACATTTATTAATT
249 GTTATTAATTAAAAAATTGTATCTACAAAATATG-T-A--ATAATTTAATTTACAATTATTAATT
* * * * *
79253001 AAAAATTT-TTGGCCTAAAGAAAGTTGTGTTAAATTTTTTTTAAAA
310 -AAAATTTATTGACCTAAAAAAAGTTATGGT-AA-TATTTTTAAAA
*
79253046 AATATTGTGCTAATTTTTTTTGATGTAAAATA-AAGTAATTACTTAAATAGAATTCTAA-ACATT
1 AA-ATTGTGCTAA-TTTTATTGATGTAAAATAGAA-TAATTACTTAAATAGAATTCTAAGA-ATT
* *
79253109 TTAATTATCGCTTAGCATTATATTCCAAATAAATTTTAAGTTAGCTTCATAAATAACT-TTCAAT
62 TTAATTATCACTTAGCATTATATACCAAATAAATTTTAAGTTAGCTTCATAAATAA-TATTCAAT
* * * * *
79253173 AGTTTGACATATTCAATCAAGTAATATCTACAAAAAATTA-ATAGTAAAAAAATGAATAGAACTC
126 AGTTAG-CATACTCAATCAAGGAACAT-TACAAAAAATTACAGA-T-AAAAAATGAATAGAACTC
* * * * *
79253237 T-AA-GT-ATAA-AACATAGA-A-AAAAAATTCTAATAATTATAATTATAATTTAATTTATAGTT
187 TAAACATAAAAAGAAAATACATACAAAAAATTCTAATAATTATAATTATAATTTAATTTACAGTT
* * * *
79253296 ATTAGTT-GAAAA-T-TA-CTA-AAAATGTGATAGTTATAATTTAATTTACAATTATTAGTTAAA
252 ATTAATTAAAAAATTGTATCTACAAAA--T-AT-GTAATAATTTAATTTACAATTATTAATTAAA
79253356 ATTTATTGACCTAAAAAAAGTTATGGTAATATTTTTAAAA
313 ATTTATTGACCTAAAAAAAGTTATGGTAATATTTTTAAAA
* * * *
79253396 GAATTGTGTTAATTTTATTGATGTAAAATAGAATAATTATTTGAATAGAATTCTAAGAATTTTAA
1 AAATTGTGCTAATTTTATTGATGTAAAATAGAATAATTACTTAAATAGAATTCTAAGAATTTTAA
79253461 TTATCACTTA
66 TTATCACTTA
79253471 ATTAATATTA
Statistics
Matches: 365, Mismatches: 43, Indels: 55
0.79 0.09 0.12
Matches are distributed among these distances:
348 54 0.15
349 12 0.03
350 11 0.03
351 9 0.02
352 45 0.12
353 2 0.01
354 3 0.01
355 4 0.01
356 5 0.01
357 44 0.12
359 1 0.00
360 6 0.02
361 3 0.01
362 47 0.13
363 20 0.05
364 15 0.04
365 20 0.05
367 1 0.00
369 2 0.01
370 12 0.03
371 24 0.07
372 25 0.07
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (352 bp):
AAATTGTGCTAATTTTATTGATGTAAAATAGAATAATTACTTAAATAGAATTCTAAGAATTTTAA
TTATCACTTAGCATTATATACCAAATAAATTTTAAGTTAGCTTCATAAATAATATTCAATAGTTA
GCATACTCAATCAAGGAACATTACAAAAAATTACAGATAAAAAATGAATAGAACTCTAAACATAA
AAAGAAAATACATACAAAAAATTCTAATAATTATAATTATAATTTAATTTACAGTTATTAATTAA
AAAATTGTATCTACAAAATATGTAATAATTTAATTTACAATTATTAATTAAAATTTATTGACCTA
AAAAAAGTTATGGTAATATTTTTAAAA
Found at i:79263479 original size:48 final size:48
Alignment explanation
Indices: 79263413--79263644 Score: 277
Period size: 48 Copynumber: 4.8 Consensus size: 48
79263403 GGGTTATGTA
* * *
79263413 TGAGCCAGTGTAAGACCATATTTGGAACATGGCATTGGCATTATTATG
1 TGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTATTATG
* * * * *
79263461 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCAATATG
1 TGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTATTATG
* * * *
79263509 CGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATG
1 TGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTATTATG
*
79263557 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGT-TGTATG
1 TGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCA-T-TAT-TATG
* * * *
79263607 AGAGCCAGTGTAAGACAATGTCCGGGACATGGCATCGG
1 TGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGG
79263645 TATTTTACCC
Statistics
Matches: 157, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
48 115 0.73
49 2 0.01
50 40 0.25
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
TGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTATTATG
Found at i:79263583 original size:96 final size:96
Alignment explanation
Indices: 79263414--79263593 Score: 324
Period size: 96 Copynumber: 1.9 Consensus size: 96
79263404 GGTTATGTAT
*
79263414 GAGCCAGTGTAAGACCATATTTGGAACATGGCATTGGCATTATTATGTGAGCCAGTGTAAGACCA
1 GAGCCAGTGTAAGACCATATTTGGAACATGGCATCGGCATTATTATGTGAGCCAGTGTAAGACCA
79263479 TGTCTGGGACATGGCATCGACCTCAATATGC
66 TGTCTGGGACATGGCATCGACCTCAATATGC
* * *
79263510 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGTGAGCCAGTGTAAGACCA
1 GAGCCAGTGTAAGACCATATTTGGAACATGGCATCGGCATTATTATGTGAGCCAGTGTAAGACCA
79263575 TGTCTGGGACATGGCATCG
66 TGTCTGGGACATGGCATCG
79263594 GCACTGTTGT
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 80 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (96 bp):
GAGCCAGTGTAAGACCATATTTGGAACATGGCATCGGCATTATTATGTGAGCCAGTGTAAGACCA
TGTCTGGGACATGGCATCGACCTCAATATGC
Found at i:79264372 original size:70 final size:70
Alignment explanation
Indices: 79264260--79264401 Score: 248
Period size: 70 Copynumber: 2.0 Consensus size: 70
79264250 TAGAAACAAT
* * * *
79264260 CAAGAACATCATCTGAATCTCGTATTGTGAGATAATTTATTTTTAGTAAAGAACGGTCGAAGCTG
1 CAAGAACATCATCCGAATCCCGTACTGTGAGATAATTAATTTTTAGTAAAGAACGGTCGAAGCTG
79264325 TCAAA
66 TCAAA
79264330 CAAGAACATCATCCGAATCCCGTACTGTGAGATAATTAATTTTTAGTAAAGAACGGTCGAAGCTG
1 CAAGAACATCATCCGAATCCCGTACTGTGAGATAATTAATTTTTAGTAAAGAACGGTCGAAGCTG
79264395 TCAAA
66 TCAAA
79264400 CA
1 CA
79264402 GCAGAACAGG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (70 bp):
CAAGAACATCATCCGAATCCCGTACTGTGAGATAATTAATTTTTAGTAAAGAACGGTCGAAGCTG
TCAAA
Found at i:79276134 original size:16 final size:16
Alignment explanation
Indices: 79276113--79276144 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
79276103 GTATGGTAAG
79276113 TATTTATATAATTAAT
1 TATTTATATAATTAAT
*
79276129 TATTTATATCATTAAT
1 TATTTATATAATTAAT
79276145 GAGATGTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTTATATAATTAAT
Found at i:79278835 original size:35 final size:35
Alignment explanation
Indices: 79278756--79278895 Score: 140
Period size: 35 Copynumber: 4.0 Consensus size: 35
79278746 TTGAGGACAA
* * *
79278756 ATCCCACCACAACACCAATACTTC-TTTCATAACAT
1 ATCCCACCACAACATCAATACTTCATTT-ATCACAC
* * *
79278791 ATCCTACCACAACATCGATACTTCATTTATCATAC
1 ATCCCACCACAACATCAATACTTCATTTATCACAC
*
79278826 ATCCCACCACAACA-CTAATACTTCACTTATCACAC
1 ATCCCACCACAACATC-AATACTTCATTTATCACAC
*** **
79278861 ATCTTGCCACAACATCAATACTTCATCCATCACAC
1 ATCCCACCACAACATCAATACTTCATTTATCACAC
79278896 TTCTTTCATA
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
34 1 0.01
35 81 0.94
36 4 0.05
ACGTcount: A:0.36, C:0.36, G:0.01, T:0.26
Consensus pattern (35 bp):
ATCCCACCACAACATCAATACTTCATTTATCACAC
Found at i:79278871 original size:70 final size:70
Alignment explanation
Indices: 79278756--79278886 Score: 183
Period size: 70 Copynumber: 1.9 Consensus size: 70
79278746 TTGAGGACAA
* * *
79278756 ATCCCACCACAACACCAATACTTCTTTCATAACATATCCTACCACAACATCGATACTTCATTTAT
1 ATCCCACCACAACACCAATACTTCCTTCATAACACATCCTACCACAACATCAATACTTCATTTAT
79278821 CATAC
66 CATAC
* * * *
79278826 ATCCCACCACAACACTAATACTTCACTT-ATCACACATCTTGCCACAACATCAATACTTCAT
1 ATCCCACCACAACACCAATACTTC-CTTCATAACACATCCTACCACAACATCAATACTTCAT
79278887 CCATCACACT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
70 51 0.96
71 2 0.04
ACGTcount: A:0.36, C:0.35, G:0.02, T:0.27
Consensus pattern (70 bp):
ATCCCACCACAACACCAATACTTCCTTCATAACACATCCTACCACAACATCAATACTTCATTTAT
CATAC
Found at i:79282676 original size:68 final size:66
Alignment explanation
Indices: 79282604--79282751 Score: 165
Period size: 67 Copynumber: 2.2 Consensus size: 66
79282594 CATCATGTGT
* * * *
79282604 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC-AG-CA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
79282667 TGTAG
62 TGTAG
* * * *
79282672 ACAAGAGAGCTACAGGATATATGTTGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
79282737 AG
65 AG
79282739 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
79282752 GAGATAAACT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 23 0.33
65 3 0.04
66 3 0.04
67 27 0.39
68 13 0.19
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:79286928 original size:20 final size:20
Alignment explanation
Indices: 79286834--79286940 Score: 60
Period size: 20 Copynumber: 5.3 Consensus size: 20
79286824 TTGTATGGGA
79286834 TTTGCACTTCGGTGCCTCTG
1 TTTGCACTTCGGTGCCTCTG
* * * *
79286854 -TTACACTTCGATGTCTTTG
1 TTTGCACTTCGGTGCCTCTG
** * *
79286873 ATTCACACTACGATGCCTCT-
1 -TTTGCACTTCGGTGCCTCTG
79286893 TCTTGCACAATT--GTGCCTCTG
1 T-TTGCAC--TTCGGTGCCTCTG
*
79286914 TTTGCACTTCGGTGCTTCTG
1 TTTGCACTTCGGTGCCTCTG
79286934 TATTGCA
1 T-TTGCA
79286941 TCAATGATGC
Statistics
Matches: 65, Mismatches: 13, Indels: 17
0.68 0.14 0.18
Matches are distributed among these distances:
18 2 0.03
19 16 0.25
20 26 0.40
21 20 0.31
22 1 0.02
ACGTcount: A:0.14, C:0.27, G:0.19, T:0.40
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCTCTG
Found at i:79288111 original size:44 final size:44
Alignment explanation
Indices: 79288043--79288128 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 44
79288033 TGTGTTTTCC
*
79288043 TGAGTAAAGCCTTAACCTGACCTAAAGGGATTAAGTTTAATTAT
1 TGAGTAAAGCATTAACCTGACCTAAAGGGATTAAGTTTAATTAT
* *
79288087 TGAGTAAAGCATTAACCTGGCCTAAAGGGCTTAAGTTTAATT
1 TGAGTAAAGCATTAACCTGACCTAAAGGGATTAAGTTTAATT
79288129 TTTGTATTTG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (44 bp):
TGAGTAAAGCATTAACCTGACCTAAAGGGATTAAGTTTAATTAT
Found at i:79299042 original size:43 final size:43
Alignment explanation
Indices: 79298984--79299118 Score: 164
Period size: 43 Copynumber: 3.1 Consensus size: 43
79298974 TATCGAAATG
*
79298984 TGATATTCGGGCTTTGGGCTTAGCAGGCTATAATGCCGGTGAAA
1 TGATA-TCGGGCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
* *
79299028 TGATATCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATCGGGCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
* * * *
79299071 T-ATTAATCGAGCCTTTGAGCCTAGCAAGCTATAATGTCGGTGAAA
1 TGA-T-ATCG-GGCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
79299116 TGA
1 TGA
79299119 AATGTTATGT
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
42 1 0.01
43 37 0.47
44 9 0.12
45 30 0.38
46 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (43 bp):
TGATATCGGGCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
Found at i:79299446 original size:38 final size:38
Alignment explanation
Indices: 79299423--79299584 Score: 227
Period size: 38 Copynumber: 4.3 Consensus size: 38
79299413 ATACTGGAAT
79299423 TATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
*
79299461 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
* * * *
79299499 TATATCCAGGTTAATTCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
* * *
79299537 TATATCCGGGTTAAATCCCACAGGCCT-AGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGTAA
*
79299575 TATATTCGGG
1 TATATCCGGG
79299585 CCTTTGAGCC
Statistics
Matches: 113, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 113 1.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
Found at i:79299628 original size:45 final size:45
Alignment explanation
Indices: 79299577--79299702 Score: 200
Period size: 45 Copynumber: 2.8 Consensus size: 45
79299567 GCTGGTATTA
*
79299577 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* *
79299622 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
*
79299667 TATTCGAG-CTTTCGAGCCTAGCAGGCTATAATGCCG
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCG
79299703 ATGAATTGAT
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
44 4 0.05
45 71 0.95
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:79304416 original size:42 final size:41
Alignment explanation
Indices: 79304343--79304464 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 41
79304333 TTTTATTTTG
*
79304343 GAGCCACACGGACAAAGGACACGAGCATGTGTCTAGGCCATGA
1 GAGCCACACGG-C-AAGGACACGAGCATGTGTCCAGGCCATGA
* * * *
79304386 GAGCCACACGGCTAAGGACACGGGCGTGTGTCCAGGCCGTGT
1 GAGCCACACGGC-AAGGACACGAGCATGTGTCCAGGCCATGA
* *
79304428 GAGCCACACAGGCAAGGACA-TAGGCAAGTGTCCAGGC
1 GAGCCACAC-GGCAAGGACACGA-GCATGTGTCCAGGC
79304465 TGTATGGCAT
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 53 0.79
43 14 0.21
ACGTcount: A:0.28, C:0.27, G:0.34, T:0.11
Consensus pattern (41 bp):
GAGCCACACGGCAAGGACACGAGCATGTGTCCAGGCCATGA
Found at i:79314229 original size:2 final size:2
Alignment explanation
Indices: 79314222--79314252 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
79314212 TGATGCTTAT
79314222 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
79314253 GCATGTGTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:79316472 original size:47 final size:47
Alignment explanation
Indices: 79316418--79316796 Score: 535
Period size: 47 Copynumber: 8.1 Consensus size: 47
79316408 CTAGGATTTT
** * * *
79316418 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
79316465 ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
79316512 ATGTGATGAATGTGAACATGCATATGTGTGTTAAGGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
79316559 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
79316606 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
79316653 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* **
79316700 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCAAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * * *
79316747 ATGAGACGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
79316794 ATG
1 ATG
79316797 CGAAATGTGT
Statistics
Matches: 304, Mismatches: 27, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 301 0.99
48 3 0.01
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:79316612 original size:22 final size:22
Alignment explanation
Indices: 79316585--79316706 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
79316575 CATGCATATG
79316585 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
79316607 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
79316630 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
* * *
79316654 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
79316679 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
79316701 TGTGAT
1 TGTGAT
79316707 GAATGTGAAC
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
22 23 0.31
23 17 0.23
24 17 0.23
25 17 0.23
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:79316828 original size:46 final size:46
Alignment explanation
Indices: 79316776--79316888 Score: 190
Period size: 46 Copynumber: 2.5 Consensus size: 46
79316766 GTATATATGT
*
79316776 GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATACGA
1 GGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATACGA
* *
79316822 GGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGT
1 GGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATACGA
*
79316868 GGTAAAGCCAAATGGCTAATG
1 GGTAAAGCCGAATGGCTAATG
79316889 TGAGAGATGT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 63 1.00
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.22
Consensus pattern (46 bp):
GGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATACGA
Found at i:79318258 original size:13 final size:13
Alignment explanation
Indices: 79318232--79318261 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
79318222 GAAAAAGAAG
79318232 AATTAGTAATAAA
1 AATTAGTAATAAA
79318245 AATTA-TAATAAA
1 AATTAGTAATAAA
79318257 AATTA
1 AATTA
79318262 AATTGCAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (13 bp):
AATTAGTAATAAA
Found at i:79328253 original size:93 final size:94
Alignment explanation
Indices: 79328128--79328367 Score: 437
Period size: 93 Copynumber: 2.6 Consensus size: 94
79328118 GATTTTATGA
79328128 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
79328193 TATACGTGATAAGGCCGAATGGCCAATGT
66 TATACGTGATAAGGCCGAATGGCCAATGT
*
79328222 GATGAATGTGAAC-TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
*
79328286 TATATGTGATAAGGCCGAATGGCCAATGT
66 TATACGTGATAAGGCCGAATGGCCAATGT
**
79328315 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGTGATGAA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
79328368 CGTGGAAGTG
Statistics
Matches: 140, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
93 91 0.65
94 49 0.35
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (94 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
TATACGTGATAAGGCCGAATGGCCAATGT
Found at i:79328267 original size:24 final size:24
Alignment explanation
Indices: 79328198--79328268 Score: 62
Period size: 24 Copynumber: 3.0 Consensus size: 24
79328188 ATGCATATAC
79328198 GTGATAAGGCCGAATGGCCAA--T
1 GTGATAAGGCCGAATGGCCAATGT
* *
79328220 GTGATGAATG-TGAACT-G-CATATGT
1 GTGAT-AAGGCCGAA-TGGCCA-ATGT
79328244 GTGATAAGGCCGAATGGCCAATGT
1 GTGATAAGGCCGAATGGCCAATGT
79328268 G
1 G
79328269 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 14
0.67 0.07 0.25
Matches are distributed among these distances:
21 2 0.05
22 10 0.27
23 8 0.22
24 15 0.41
25 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.24
Consensus pattern (24 bp):
GTGATAAGGCCGAATGGCCAATGT
Found at i:79328402 original size:47 final size:47
Alignment explanation
Indices: 79328128--79328367 Score: 437
Period size: 47 Copynumber: 5.1 Consensus size: 47
79328118 GATTTTATGA
79328128 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
79328175 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
79328222 GATGAATGTGAAC-TGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
79328268 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
79328315 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
79328362 GATGAA
1 GATGAA
79328368 CGTGGAAGTG
Statistics
Matches: 186, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
46 44 0.24
47 142 0.76
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:79328441 original size:46 final size:46
Alignment explanation
Indices: 79328391--79328517 Score: 218
Period size: 46 Copynumber: 2.8 Consensus size: 46
79328381 ATATGTGGCG
79328391 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
*
79328437 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
* * *
79328483 AAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
79328518 TGTATATATA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
Found at i:79328448 original size:140 final size:139
Alignment explanation
Indices: 79328131--79328416 Score: 414
Period size: 140 Copynumber: 2.1 Consensus size: 139
79328121 TTTATGAGAT
*
79328131 GAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATAT
1 GAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATAT
* * * *
79328196 ACGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTGCATATGTGTGATAAGGCCGAATGG
66 ACGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACTGCATATATGTGAGAAGGCCGAATGG
*
79328261 CCAATGTGA
131 CCAATGCGA
*
79328270 TGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATA
1 -GAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATA
* * * * *
79328335 TATGTGATAAGGTAGAATGGCCAATGTGATGAACGTGGAAGTGTATATATGTGGCGAA-GCCGAA
65 TACGTGATAAGGCAGAATGGCCAATGTGATGAACGT-GAACTGCATATATGT-GAGAAGGCCGAA
*
79328399 TGGCTAATGCGA
128 TGGCCAATGCGA
79328411 -AATGTG
1 GAATGTG
79328417 TATGAGATGG
Statistics
Matches: 133, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
139 6 0.05
140 96 0.72
141 28 0.21
142 3 0.02
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (139 bp):
GAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATAT
ACGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACTGCATATATGTGAGAAGGCCGAATGG
CCAATGCGA
Found at i:79334562 original size:40 final size:39
Alignment explanation
Indices: 79334517--79334646 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
79334507 CGGAATATAA
79334517 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
79334557 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
79334597 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
79334637 CCGGATATAA
1 CCGGATATAA
79334647 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:79334661 original size:40 final size:40
Alignment explanation
Indices: 79334533--79334684 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
79334523 ATAACCATGT
* * *
79334533 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
79334573 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
79334613 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
79334653 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
79334685 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:79334667 original size:80 final size:80
Alignment explanation
Indices: 79334533--79334682 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
79334523 ATAACCATGT
*
79334533 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
79334597 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
79334613 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
79334676 CCCGGAT
64 CCCGGAT
79334683 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:79349579 original size:37 final size:37
Alignment explanation
Indices: 79349529--79349618 Score: 162
Period size: 37 Copynumber: 2.4 Consensus size: 37
79349519 TATTACGACA
79349529 TCTTACCCGGACATAATCTCCACACGTAGTCATCGGG
1 TCTTACCCGGACATAATCTCCACACGTAGTCATCGGG
79349566 TCTTACCCGGACATAATCTCCACACGTAGTCATCGGG
1 TCTTACCCGGACATAATCTCCACACGTAGTCATCGGG
*
79349603 TCTCACCCGGAACATA
1 TCTTACCCGG-ACATA
79349619 TTTCCAAGTT
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 46 0.90
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
TCTTACCCGGACATAATCTCCACACGTAGTCATCGGG
Found at i:79349716 original size:48 final size:48
Alignment explanation
Indices: 79349658--79349761 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
79349648 TGTTACAACA
79349658 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
*
79349706 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
79349754 TTCACATT
1 TTCACATT
79349762 CATCACATCG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
Found at i:79349810 original size:49 final size:49
Alignment explanation
Indices: 79349753--79350135 Score: 657
Period size: 49 Copynumber: 7.9 Consensus size: 49
79349743 CACACATATA
*
79349753 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
79349802 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
79349849 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
79349898 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
79349945 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
79349994 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATACATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
79350043 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
79350092 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
79350136 CATCTCATAC
Statistics
Matches: 316, Mismatches: 14, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
47 89 0.28
49 227 0.72
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:79349854 original size:96 final size:96
Alignment explanation
Indices: 79349753--79350136 Score: 687
Period size: 96 Copynumber: 4.0 Consensus size: 96
79349743 CACACATATA
* *
79349753 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
79349818 TCGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACTC
*
79349849 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
79349914 TTGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACTC
*
79349945 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
79350010 TTGGCCATTAGGCCTTATCACATATACATACAC
66 TTGGCCATTAGGCCTTATCACATAT--ATACTC
79350043 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
79350108 TTGGCCATTAGGCCGTATCACATATATAC
66 TTGGCCATTAGGCCTTATCACATATATAC
79350137 ATCTCATACA
Statistics
Matches: 279, Mismatches: 7, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
96 186 0.67
98 93 0.33
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACATATATACTC
Found at i:79349907 original size:145 final size:145
Alignment explanation
Indices: 79349753--79350137 Score: 666
Period size: 145 Copynumber: 2.7 Consensus size: 145
79349743 CACACATATA
* *
79349753 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* *
79349818 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
66 TTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTAT
* *
79349883 CACATGTATATACAC
131 CACATATACATACAC
*
79349898 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTCTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
79349961 TTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
66 TTGGCCATTAGGCCTTATCACA--TATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
79350026 ATCACATATACATACAC
129 ATCACATATACATACAC
79350043 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
79350108 TTGGCCATTAGGCCGTATCACATATATACA
66 TTGGCCATTAGGCCTTATCACATATATACA
79350138 TCTCATACAT
Statistics
Matches: 227, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
143 45 0.20
145 136 0.60
147 46 0.20
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (145 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTAT
CACATATACATACAC
Found at i:79353355 original size:50 final size:48
Alignment explanation
Indices: 79353150--79353468 Score: 197
Period size: 46 Copynumber: 6.7 Consensus size: 48
79353140 ATTTGTATGC
* *
79353150 TAGTGTAAGACCATGTCTGGGACATGGCATC-G-AC-ATTGAAACGAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATTG---TGAGAGT
* * * * *
79353198 TAGTGTGAGA-CATGTTTGGGACAT-GCATTGG--C-ATCGTGACGTAAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATTGTGA-G--AGT
* * * *
79353244 CAGTGTAAGA-CATGTCTAGAACAT-GCATCGGCTACGA----GATGTGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGATTGTGA-GAGT
* *
79353288 CAGTGTAAGACCCTGTCTGGGACATGGCATCGGCACGGATATGTGAGAGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GAT-TGTGAGAGT
* * * **
79353338 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTTAACTGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGATTGTGAGAGT
* * *
79353387 TACTGTAAGACCATGTCTGGGGCATGGCATC-G-AC--TTGATGAATGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATTG-TG-A-GAGT
79353434 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
79353469 TTACACCCTG
Statistics
Matches: 214, Mismatches: 35, Indels: 43
0.73 0.12 0.15
Matches are distributed among these distances:
43 2 0.01
44 14 0.07
45 14 0.07
46 51 0.24
47 44 0.21
48 11 0.05
49 36 0.17
50 38 0.18
51 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATTGTGAGAGT
Found at i:79353413 original size:49 final size:50
Alignment explanation
Indices: 79353291--79353468 Score: 172
Period size: 49 Copynumber: 3.6 Consensus size: 50
79353281 GATGTGTCAG
* * * * *
79353291 TGTAAGACCCTGTCTGGGACATGGCATCGGCACGGATATGTGAGAGTTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGTAACAGTTAC
* *
79353341 TGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAT-TTTAACTGTTAC
1 TGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATATGTAACAGTTAC
* * * * *
79353390 TGTAAGACCATGTCTGGGGCATGGCATC-G-A-C-TTGATG-AATGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACCGAT-ATGTAA-CAGTTAC
79353437 TGTAAGACCATGTCTGGGACATGGCATCGGCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCA
79353469 TTACACCCTG
Statistics
Matches: 106, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 3 0.03
47 31 0.29
48 2 0.02
49 36 0.34
50 33 0.31
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGTAACAGTTAC
Found at i:79358437 original size:27 final size:26
Alignment explanation
Indices: 79358384--79358437 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
79358374 TTGCATGACA
* *
79358384 TTTTCTGTACATATCTATATTTTTAT
1 TTTTCTGTACATATCTATATATATAT
*
79358410 TTTTCTGTTACATATCTGTATATATAT
1 TTTTCTG-TACATATCTATATATATAT
79358437 T
1 T
79358438 GAGGACAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.24, C:0.11, G:0.06, T:0.59
Consensus pattern (26 bp):
TTTTCTGTACATATCTATATATATAT
Found at i:79361353 original size:19 final size:19
Alignment explanation
Indices: 79361329--79361369 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
79361319 ATACTTTTTT
79361329 TCATAAAATATTGATACCA
1 TCATAAAATATTGATACCA
79361348 TCATAAAATATTGATACCA
1 TCATAAAATATTGATACCA
79361367 TCA
1 TCA
79361370 ACTAGTTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.46, C:0.17, G:0.05, T:0.32
Consensus pattern (19 bp):
TCATAAAATATTGATACCA
Found at i:79362689 original size:2 final size:2
Alignment explanation
Indices: 79362682--79362715 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
79362672 AGTATAGTTG
* *
79362682 AT AT AT AT AT AT AT AT AT AT AT AG AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79362716 TCGGCCATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (2 bp):
AT
Found at i:79365091 original size:40 final size:39
Alignment explanation
Indices: 79364923--79365093 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
79364913 AGAAATTGAA
* *
79364923 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
79364963 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
79365003 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
79365043 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
79365083 TGATATCCGGG
1 TGATATCCGGG
79365094 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:79373168 original size:40 final size:39
Alignment explanation
Indices: 79373000--79373170 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
79372990 AGAAATTGAA
* *
79373000 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
79373040 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
79373080 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
79373120 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
79373160 TGATATCCGGG
1 TGATATCCGGG
79373171 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:79376619 original size:40 final size:39
Alignment explanation
Indices: 79376525--79376673 Score: 135
Period size: 39 Copynumber: 3.8 Consensus size: 39
79376515 AATTGAATGA
* * * ** *
79376525 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCATC
* * *
79376564 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CAT-C
79376605 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATC
*
79376643 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
79376674 AAATCGTGAT
Statistics
Matches: 89, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
38 2 0.02
39 57 0.64
40 30 0.34
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATC
Found at i:79376688 original size:79 final size:79
Alignment explanation
Indices: 79376567--79376750 Score: 181
Period size: 79 Copynumber: 2.3 Consensus size: 79
79376557 GGAAATTTAA
* * * *
79376567 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
79376632 TGCGAGTCATCTAT
66 TGCGAGTCATCTAT
* * * * * * *
79376646 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTC
* * * *
79376710 GTGCGGGTTACCATAA
65 GTGCGAGTCATC-TAT
* * *
79376726 CCGGGCTATGTCCCGAAGGCGATTG
1 CCGGGCTAAGACCCGAAGGCAATTG
79376751 ATCGAGTAGC
Statistics
Matches: 84, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
78 1 0.01
79 60 0.71
80 23 0.27
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.22
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATCTAT
Found at i:79384709 original size:40 final size:39
Alignment explanation
Indices: 79384622--79384771 Score: 130
Period size: 40 Copynumber: 3.8 Consensus size: 39
79384612 AATTGAATGA
* * * **
79384622 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAAT-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCATC
* *
79384660 TATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TAT--CCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CAT-C
79384703 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATC
*
79384741 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
79384772 AAATCGTGAT
Statistics
Matches: 91, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
38 5 0.05
39 30 0.33
40 53 0.58
41 1 0.01
42 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATC
Found at i:79384756 original size:39 final size:38
Alignment explanation
Indices: 79384665--79384771 Score: 128
Period size: 39 Copynumber: 2.7 Consensus size: 38
79384655 GAAATTATAA
* *
79384665 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCGAGT-GCTACAT
79384705 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-C-ATCTAT
1 CCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGCTA-C-AT
79384744 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCA-TTGTGC
79384772 AAATCGTGAT
Statistics
Matches: 61, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
37 1 0.02
38 2 0.03
39 30 0.49
40 28 0.46
ACGTcount: A:0.23, C:0.26, G:0.30, T:0.21
Consensus pattern (38 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCGAGTGCTACAT
Found at i:79384786 original size:79 final size:79
Alignment explanation
Indices: 79384665--79384848 Score: 181
Period size: 79 Copynumber: 2.3 Consensus size: 79
79384655 GAAATTATAA
* * * *
79384665 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
79384730 TGCGAGTCATCTAT
66 TGCGAGTCATCTAT
* * * * * * *
79384744 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTC
* * * *
79384808 GTGCGGGTTACCATAA
65 GTGCGAGTCATC-TAT
* * *
79384824 CCGGGCTATGTCCCGAAGGCGATTG
1 CCGGGCTAAGACCCGAAGGCAATTG
79384849 ATCGAGTAGC
Statistics
Matches: 84, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
78 1 0.01
79 60 0.71
80 23 0.27
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.22
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATCTAT
Found at i:79386295 original size:27 final size:27
Alignment explanation
Indices: 79386265--79386332 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 27
79386255 ATACTCCTAT
*
79386265 TAGGGTAAAGTGACCGTAA-AGCCCCTG
1 TAGGGTAAAATGACCGTAATA-CCCCTG
79386292 TAGGGTAAAATGACCGTAATACCCCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
*
79386319 TATGGTAAAATGAC
1 TAGGGTAAAATGAC
79386333 GAATATGCCC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (27 bp):
TAGGGTAAAATGACCGTAATACCCCTG
Found at i:79387519 original size:25 final size:25
Alignment explanation
Indices: 79387490--79387537 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79387480 TTATAACATG
* * *
79387490 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79387515 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79387538 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79387603 original size:20 final size:20
Alignment explanation
Indices: 79387580--79387620 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
79387570 ATAAACATTG
79387580 TATGGATGATATACACATGA
1 TATGGATGATATACACATGA
* *
79387600 TATGTATGATATGCACATGA
1 TATGGATGATATACACATGA
79387620 T
1 T
79387621 GTATTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGGATGATATACACATGA
Found at i:79387701 original size:23 final size:23
Alignment explanation
Indices: 79387671--79387790 Score: 168
Period size: 23 Copynumber: 5.1 Consensus size: 23
79387661 AGGAAGTGAA
*
79387671 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
79387694 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
79387717 AAAGGGCTTATGCCCTAGTTATAA
1 AAAGGGCTTATGCCCCAGTTAT-T
* *
79387741 AAAGGGCTTTTGCCCAAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
79387764 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
79387788 AAA
1 AAA
79387791 AGAGGCTAGG
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 46 0.52
24 42 0.48
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:79387738 original size:46 final size:47
Alignment explanation
Indices: 79387670--79387790 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
79387660 GAGGAAGTGA
*
79387670 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCAAGTTATT
* *
79387717 -AAAGGGCTTATGCCCTAGTTATAAAAAGGGCTTTTGCCCAAGTTATT
1 AAAAGGGCTTATGCCCTAGTTAT-TAAAGGGCTTATGCCCAAGTTATT
* *
79387764 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCTAGTTATTAAA
79387791 AGAGGCTAGG
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 22 0.33
47 24 0.36
48 20 0.30
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCAAGTTATT
Found at i:79387749 original size:24 final size:23
Alignment explanation
Indices: 79387670--79387812 Score: 162
Period size: 24 Copynumber: 6.0 Consensus size: 23
79387660 GAGGAAGTGA
*
79387670 AAAAGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
79387693 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
79387716 TAAAGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
79387739 AAAAAGGGCTTTTGCCCAAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
79387764 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
79387788 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
79387812 A
1 A
79387813 TGATAAAGCA
Statistics
Matches: 107, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
23 43 0.40
24 53 0.50
25 11 0.10
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:79395485 original size:40 final size:40
Alignment explanation
Indices: 79395436--79395579 Score: 148
Period size: 40 Copynumber: 3.6 Consensus size: 40
79395426 ATCCGGGCTA
79395436 AGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGG-TT
1 AGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGATT
* * * *
79395475 AATTCTCGAAGGCATTTGTGCGAGTTCCCAAATCCGGGATT
1 -AGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGATT
* * ** * *
79395516 AGTCCCGAAGGCATTTATGCGAGCTATTATAACCGGG-CT
1 AGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGATT
* *
79395555 ATGTCCCGAAGGCTTTTGAGCGAGT
1 A-GTCCCGAAGGCATTTGTGCGAGT
79395580 CGCTATATCT
Statistics
Matches: 84, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 2 0.02
40 80 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGATT
Done.