Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 264 of 770
Found at i:79395565 original size:80 final size:80
Alignment explanation
Indices: 79395426--79395579 Score: 193
Period size: 80 Copynumber: 1.9 Consensus size: 80
79395416 TTTGAATGGT
* * * * *
79395426 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAATTCTCGAAGGCATT
1 ATCCGGGATAAGTCCCGAAGGCATTTATGCGAGCTACCAAAACCGGGCTAATTCCCGAAGGCATT
*
79395491 TGTGCGAGTTCCCAA
66 TGAGCGAGTTCCCAA
* ** * *
79395506 ATCCGGGATTAGTCCCGAAGGCATTTATGCGAGCTATTATAACCGGGCT-ATGTCCCGAAGGCTT
1 ATCCGGGATAAGTCCCGAAGGCATTTATGCGAGCTACCAAAACCGGGCTAAT-TCCCGAAGGCAT
79395570 TTGAGCGAGT
65 TTGAGCGAGT
79395580 CGCTATATCT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
79 2 0.03
80 60 0.97
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
ATCCGGGATAAGTCCCGAAGGCATTTATGCGAGCTACCAAAACCGGGCTAATTCCCGAAGGCATT
TGAGCGAGTTCCCAA
Found at i:79396603 original size:15 final size:15
Alignment explanation
Indices: 79396583--79396612 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
79396573 AGAAAGAAAA
79396583 AAAATTGTTCATCCT
1 AAAATTGTTCATCCT
79396598 AAAATTGTTCATCCT
1 AAAATTGTTCATCCT
79396613 TTCTTTGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (15 bp):
AAAATTGTTCATCCT
Found at i:79397890 original size:40 final size:40
Alignment explanation
Indices: 79397835--79398042 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
79397825 TGAATGATAC
* *
79397835 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
79397875 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
79397915 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
79397955 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
79397995 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
79398035 CC-GGCTAA
1 CCGGGCTAA
79398043 ATTCCGAAGA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 6 0.04
40 138 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:79405941 original size:40 final size:39
Alignment explanation
Indices: 79405886--79406037 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 39
79405876 TGAATGGTAT
79405886 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * *
79405926 CCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTCCCAAAT
1 CCGGGCT-AGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * ** *
79405966 CCGGGATTAGTCCCGAAGGCATTTATGCGAGCTATTATAA
1 CCGGG-CTAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
79406006 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTA-GTCCCGAAGGCATTTGTGCGAGT
79406038 CGCTATATCT
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:79406020 original size:80 final size:80
Alignment explanation
Indices: 79405884--79406037 Score: 202
Period size: 80 Copynumber: 1.9 Consensus size: 80
79405874 TTTGAATGGT
* * * *
79405884 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAATTCCCGAAGGCATT
1 ATCCGGGATAAGTCCCGAAGGCATTTATGCGAGCTACCAAAACCGGGCTAATTCCCGAAGGCATT
*
79405949 TGTGCGAGTTCCCAA
66 TGAGCGAGTTCCCAA
* ** * *
79405964 ATCCGGGATTAGTCCCGAAGGCATTTATGCGAGCTATTATAACCGGGCT-ATGTCCCGAAGGCTT
1 ATCCGGGATAAGTCCCGAAGGCATTTATGCGAGCTACCAAAACCGGGCTAAT-TCCCGAAGGCAT
79406028 TTGAGCGAGT
65 TTGAGCGAGT
79406038 CGCTATATCT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.03
80 61 0.97
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGATAAGTCCCGAAGGCATTTATGCGAGCTACCAAAACCGGGCTAATTCCCGAAGGCATT
TGAGCGAGTTCCCAA
Found at i:79409338 original size:48 final size:48
Alignment explanation
Indices: 79409263--79409535 Score: 229
Period size: 48 Copynumber: 5.7 Consensus size: 48
79409253 TGATATGTTT
* *
79409263 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCATATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCATATTATGAGA
* *** *
79409311 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGATGTTGA-TATGTGCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAT-ATTATGAG-A
* * *
79409360 -CTAGTGTAAGACCATGTCTGGGACATGGCATCG-GCAT-TGATATGTGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCATAT--TATGAGA
* * * *
79409407 GCTAGTGTAAGACCATGTCTAGGACATGGCGTC-AGCCACAATATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCATATTATGAGA
** * * * *
79409455 GCCGGTGTAAGACCATGTTTGGAACATGGCATCG-GCAT-TGA-GACGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCATATTATGA-G--A
*
79409503 GCTAGTGTAAGACCATGACTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
79409536 AGTAATTTAC
Statistics
Matches: 178, Mismatches: 34, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
45 2 0.01
46 2 0.01
47 3 0.02
48 167 0.94
49 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCATATTATGAGA
Found at i:79409417 original size:96 final size:95
Alignment explanation
Indices: 79409263--79409537 Score: 306
Period size: 96 Copynumber: 2.9 Consensus size: 95
79409253 TGATATGTTT
* *
79409263 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCA-T-ATTATGAGAGCCAGTGTAAGACCA
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCG-GCATTGA-TATGAGAGCTAGTGTAAGACCA
*** *
79409326 TGTCTGGGACATGGCATCGATG-TTGATATGTGCA
64 TGTCTGGGACATGGCATC-A-GCACAATATGAG-A
* * * *
79409360 -CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATG
* *
79409424 TCTAGGACATGGCGTCAGCCACAATATGAGA
66 TCTGGGACATGGCATCAG-CACAATATGAGA
** * * *
79409455 GCCGGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAAAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATG
*
79409520 ACTGGGACATGGCATCAG
66 TCTGGGACATGGCATCAG
79409538 TAATTTACTC
Statistics
Matches: 149, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
94 1 0.01
95 4 0.03
96 143 0.96
97 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (95 bp):
GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATG
TCTGGGACATGGCATCAGCACAATATGAGA
Found at i:79409513 original size:144 final size:144
Alignment explanation
Indices: 79409253--79409535 Score: 365
Period size: 144 Copynumber: 2.0 Consensus size: 144
79409243 GAGATTTGAA
** * * *
79409253 TGATATGTTTGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCATATTATGAGAGCCAGTG
1 TGATATGTGCGCTAGTGTAAGACCATGTTAGGAACATGGCATCGACCACAATATGAGAGCCAGTG
* ** * * ** *
79409318 TAAGACCATGTCTGGGACATGGCATCGATGTTGATATGTGCACTAGTGTAAGACCATGTCTGGGA
66 TAAGACCATGTCTGGAACATGGCATCGACATTGAGACGTAAACTAGTGTAAGACCATGACTGGGA
79409383 CATGGCATCGGCAT
131 CATGGCATCGGCAT
* *
79409397 TGATATGTGCGCTAGTGTAAGACCATGTCTAGG-ACATGGCGTC-AGCCACAATATGAGAGCCGG
1 TGATATGTGCGCTAGTGTAAGACCATGT-TAGGAACATGGCATCGA-CCACAATATGAGAGCCAG
* *
79409460 TGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACG-AAAGCTAGTGTAAGACCATGACTG
64 TGTAAGACCATGTCTGGAACATGGCATCGACATTGAGACGTAAA-CTAGTGTAAGACCATGACTG
79409524 GGACATGGCATC
128 GGACATGGCATC
79409536 AGTAATTTAC
Statistics
Matches: 119, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
143 2 0.02
144 114 0.96
145 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (144 bp):
TGATATGTGCGCTAGTGTAAGACCATGTTAGGAACATGGCATCGACCACAATATGAGAGCCAGTG
TAAGACCATGTCTGGAACATGGCATCGACATTGAGACGTAAACTAGTGTAAGACCATGACTGGGA
CATGGCATCGGCAT
Found at i:79415395 original size:29 final size:29
Alignment explanation
Indices: 79415362--79415435 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
79415352 CCTTCGAGCT
79415362 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
79415391 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
79415420 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
79415436 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:79415396 original size:58 final size:58
Alignment explanation
Indices: 79415303--79415435 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
79415293 ATACTCGATT
* * * * *
79415303 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
79415361 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
79415419 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
79415436 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:79418658 original size:27 final size:27
Alignment explanation
Indices: 79418628--79418973 Score: 336
Period size: 27 Copynumber: 12.4 Consensus size: 27
79418618 GGCATAATCT
*
79418628 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
79418655 TCATTTTACCCTATAGGGGCATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
79418682 TCATTTTACCCTACAGGGTTATTATGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
79418709 TCATTTTACCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
79418736 TCATTTTACCCTATAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
79418763 TTATTTTACCCTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * ** *
79418790 TCACTTTACCTTATGGGGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
79418817 TCATTTTATCCTA-AGGGGAATTACTG
1 TCATTTTACCCTACAGGGGTATTACGG
** *
79418843 TCATTTTACCCTAC-GGTCATTTTACCTACAGGGG
1 TCATTTTACCCTACAGG----GGTA-TTAC---GG
* *
79418877 CATTACTGTATTTACCCTACAGGGGCATTACGG
1 --TCA---T-TTTACCCTACAGGGGTATTACGG
* *
79418910 TCATTTTATCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
79418937 TCATTTTACCCTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
79418964 TCATTTTACC
1 TCATTTTACC
79418974 TATTTTAGGG
Statistics
Matches: 260, Mismatches: 43, Indels: 32
0.78 0.13 0.10
Matches are distributed among these distances:
26 24 0.09
27 207 0.80
28 1 0.00
30 1 0.00
31 5 0.02
33 2 0.01
34 1 0.00
36 5 0.02
37 1 0.00
39 1 0.00
40 10 0.04
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:79418686 original size:54 final size:54
Alignment explanation
Indices: 79418628--79418973 Score: 416
Period size: 54 Copynumber: 6.7 Consensus size: 54
79418618 GGCATAATCT
* * *
79418628 TCATTTTACCATACAGGGGTATTACGGTCATTTTACCCTATAGGGGCATTACAG
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGG
* *
79418682 TCATTTTACCCTACAGGGTTATTATGGTCATTTTACCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGG
* * *
79418736 TCATTTTACCCTATAGGGGTATTACGGTTATTTTACCCTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGG
* * ** * * * *
79418790 TCACTTTACCTTATGGGGGTATTACAGTCATTTTATCCTA-AGGGGAATTACTG
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGG
*
79418843 TCATTTTA-CC--C--------TACGGTCATTTTA-CCTACAGGGGCATTACTG
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGG
* *
79418885 T-A-TTTACCCTACAGGGGCATTACGGTCATTTTATCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGG
79418937 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACC
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACC
79418974 TATTTTAGGG
Statistics
Matches: 251, Mismatches: 26, Indels: 30
0.82 0.08 0.10
Matches are distributed among these distances:
40 4 0.02
41 7 0.03
42 25 0.10
43 1 0.00
51 13 0.05
52 19 0.08
53 19 0.08
54 163 0.65
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.35
Consensus pattern (54 bp):
TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGG
Found at i:79418733 original size:81 final size:81
Alignment explanation
Indices: 79418628--79418973 Score: 407
Period size: 81 Copynumber: 4.5 Consensus size: 81
79418618 GGCATAATCT
* *
79418628 TCATTTTACCATACAGGGGTATTACGGTCATTTTACCCTATAGGGGCATTACAGTCATTTTACCC
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAGGGGCATTACGGTCATTTTACCC
* *
79418693 TACAGGGTTATTATGG
66 TACAGGGGTATTACGG
* * *
79418709 TCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTACGGTTATTTTACCC
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAGGGGCATTACGGTCATTTTACCC
79418774 TACAGGGGTATTACGG
66 TACAGGGGTATTACGG
* * ** * * * *
79418790 TCACTTTACCTTATGGGGGTATTACAGTCATTTTATCCTA-AGGGGAATTACTGTCATTTTA-CC
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAGGGGCATTACGGTCATTTTACCC
79418853 --C--------TACGG
66 TACAGGGGTATTACGG
* * * *
79418859 TCATTTTA-CCTACAGGGGCATTACTGT-A-TTTACCCTACAGGGGCATTACGGTCATTTTATCC
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAGGGGCATTACGGTCATTTTACCC
*
79418921 TACAGGGGCATTACGG
66 TACAGGGGTATTACGG
79418937 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACC
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACC
79418974 TATTTTAGGG
Statistics
Matches: 222, Mismatches: 28, Indels: 30
0.79 0.10 0.11
Matches are distributed among these distances:
66 8 0.04
67 20 0.09
68 16 0.07
69 12 0.05
70 1 0.00
77 1 0.00
78 13 0.06
79 19 0.09
80 19 0.09
81 113 0.51
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.35
Consensus pattern (81 bp):
TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAGGGGCATTACGGTCATTTTACCC
TACAGGGGTATTACGG
Found at i:79418876 original size:42 final size:40
Alignment explanation
Indices: 79418816--79418896 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 40
79418806 GGGTATTACA
79418816 GTCATTTTATCCTAAGGGGAATTACTGTCATTTTACCCTACG
1 GTCATTTTATCCTAAGGGGAATTACTGT-A-TTTACCCTACG
*
79418858 GTCATTTTA-CCTACAGGGGCATTACTGTATTTACCCTAC
1 GTCATTTTATCCTA-AGGGGAATTACTGTATTTACCCTAC
79418897 AGGGGCATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
40 10 0.27
41 5 0.14
42 22 0.59
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.37
Consensus pattern (40 bp):
GTCATTTTATCCTAAGGGGAATTACTGTATTTACCCTACG
Found at i:79427783 original size:39 final size:40
Alignment explanation
Indices: 79427670--79427826 Score: 280
Period size: 40 Copynumber: 4.0 Consensus size: 40
79427660 TGGAAAAAAA
79427670 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
79427710 TATAACCGGGTTAAGTCCAGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
79427750 TATAACCGGGTTAAGT-CCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
79427789 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
79427827 GTTACATCCG
Statistics
Matches: 112, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
39 38 0.34
40 74 0.66
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:79427802 original size:79 final size:80
Alignment explanation
Indices: 79427670--79427826 Score: 280
Period size: 79 Copynumber: 2.0 Consensus size: 80
79427660 TGGAAAAAAA
79427670 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCAGAAGGC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCAGAAGGC
79427735 ATTCGTGCGGGTTAT
66 ATTCGTGCGGGTTAT
*
79427750 TATAACCGGGTTAAGT-CCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCAGAAGGC
* *
79427814 ATTTGTGCTGGTT
66 ATTCGTGCGGGTT
79427827 GTTACATCCG
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
79 58 0.78
80 16 0.22
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (80 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCAGAAGGC
ATTCGTGCGGGTTAT
Found at i:79435476 original size:40 final size:40
Alignment explanation
Indices: 79435421--79435528 Score: 207
Period size: 40 Copynumber: 2.7 Consensus size: 40
79435411 TGGAAAAAAA
79435421 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
*
79435461 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
79435501 TATAACCGGGTTAAGTCCCGAAGGCATT
1 TATAACCGGGTTAAGTCCCGAAGGCATT
79435529 TGTGCTGGTT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
Found at i:79441438 original size:48 final size:48
Alignment explanation
Indices: 79441378--79441490 Score: 122
Period size: 48 Copynumber: 2.3 Consensus size: 48
79441368 GTCCAACTAT
* * * *
79441378 GGTCTTATACTAGCTCTGCTCT-GCCCGTGCTGATGCCTATTCCC-GATA
1 GGTCTTACACTAGCACT-CACTGGCCCGTGCCGATGCCTA-TCCCAGATA
* *
79441426 GGTCTTACACTAGCACTCACTGGGCTGTGCCGATGCCTATCCCAGATA
1 GGTCTTACACTAGCACTCACTGGCCCGTGCCGATGCCTATCCCAGATA
*
79441474 GGTCTTACGCTTAGCAC
1 GGTCTTACAC-TAGCAC
79441491 AAGTCAAGCT
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
47 7 0.13
48 42 0.76
49 6 0.11
ACGTcount: A:0.18, C:0.31, G:0.22, T:0.29
Consensus pattern (48 bp):
GGTCTTACACTAGCACTCACTGGCCCGTGCCGATGCCTATCCCAGATA
Found at i:79444014 original size:29 final size:30
Alignment explanation
Indices: 79443972--79444035 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 30
79443962 CCGTGACAGA
*
79443972 GTATGAGCAGAAATTTTTGAGACTT-GTCG
1 GTATGAGCAGAAATTTGTGAGACTTAGTCG
* *
79444001 GTATGAGCTGAAATTTGTGAGGCTTAGTCG
1 GTATGAGCAGAAATTTGTGAGACTTAGTCG
*
79444031 ATATG
1 GTATG
79444036 CCCGAGAGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 22 0.73
30 8 0.27
ACGTcount: A:0.27, C:0.09, G:0.30, T:0.34
Consensus pattern (30 bp):
GTATGAGCAGAAATTTGTGAGACTTAGTCG
Found at i:79453550 original size:42 final size:40
Alignment explanation
Indices: 79453487--79453605 Score: 139
Period size: 42 Copynumber: 2.9 Consensus size: 40
79453477 TCGACTTCTA
*
79453487 TTTTGCGTGTAAGACCATGTCTGGGACATTGGCATCGTATCC
1 TTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCG-AT-C
* * *
79453529 TTTTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATG
1 TTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATC
* *
79453569 TTTGATTACATGTAAGACCATGTCTGGGACGTTGGCA
1 TTT--TT-CGTGTAAGACCATGTCTGGGACATTGGCA
79453606 CTATATACGC
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
40 3 0.05
41 2 0.03
42 36 0.55
43 25 0.38
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (40 bp):
TTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATC
Found at i:79456610 original size:46 final size:47
Alignment explanation
Indices: 79456552--79456719 Score: 134
Period size: 46 Copynumber: 3.6 Consensus size: 47
79456542 TCTCGTAGCT
* *
79456552 GATGC-ATGTCCCAGACATGTCTTACACTGGCTTAC-GTCTCGAGGTC
1 GATGCAATATCCCAGACATGTCTTACACTGGC-TACTGTCTCGAGGCC
* * *
79456598 GATG-AATATCCCAAACATGTCTTACACTAGC-ACTTGTCTCGATGCC
1 GATGCAATATCCCAGACATGTCTTACACTGGCTAC-TGTCTCGAGGCC
* * * * * *
79456644 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-CTCATAAT-GTGGCT
1 GATGCAATATCCCAGACAT-GTCTTACACTGGCTACT-GT-CTCGAGGCC
*
79456692 GATGC-ATGTCCCAGACATGTCTTACACT
1 GATGCAATATCCCAGACATGTCTTACACT
79456720 AGCCTACAAT
Statistics
Matches: 100, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
44 2 0.02
46 50 0.50
47 25 0.25
48 22 0.22
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
GATGCAATATCCCAGACATGTCTTACACTGGCTACTGTCTCGAGGCC
Found at i:79456704 original size:94 final size:92
Alignment explanation
Indices: 79456552--79456722 Score: 222
Period size: 94 Copynumber: 1.8 Consensus size: 92
79456542 TCTCGTAGCT
* *
79456552 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCGATGAATATCCCAAACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGTCGATGAATATCCCAAACATG
79456617 TCTTACACTAGCACTTGTCTCGATGCC
66 TCTTACACTAGCACTTGTCTCGATGCC
* * * *
79456644 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGG-CTGATGCATGTCCCAG
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGTC-GATGAATATCCCAA
79456706 ACATGTCTTACACTAGC
61 ACATGTCTTACACTAGC
79456723 CTACAATAAC
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
92 4 0.06
93 15 0.22
94 47 0.69
95 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGTCGATGAATATCCCAAACATG
TCTTACACTAGCACTTGTCTCGATGCC
Found at i:79463879 original size:27 final size:27
Alignment explanation
Indices: 79463814--79463992 Score: 254
Period size: 27 Copynumber: 6.7 Consensus size: 27
79463804 TTTGGTTTAC
79463814 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * * *
79463840 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
79463867 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
79463894 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
79463921 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
79463948 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
79463975 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
79463993 TCGACCTGTA
Statistics
Matches: 138, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
26 14 0.10
27 123 0.89
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:79463935 original size:81 final size:80
Alignment explanation
Indices: 79463814--79464046 Score: 272
Period size: 81 Copynumber: 2.9 Consensus size: 80
79463804 TTTGGTTTAC
* *
79463814 AAAATTACCAAAATACCCTGCTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACCAA
1 AAAATTACCAAAATACCCTGATTTGTAAAATTATC-AAAATACCCTTGGTTTGTAAAATTACCAA
*
79463878 AATACCCCTAGTTTGT
65 AATACCCCTAATTTGT
* *
79463894 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAAATTACCAAAATA-CCCTGA-TTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCA
79463958 AAATACCCCTAATTTGT
64 AAATACCCCTAATTTGT
* ** ** ** * **
79463975 GAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCT-GATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAA
*
79464040 AGTACCC
65 AATACCC
79464047 TCAATTTATA
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 19 0.15
81 109 0.84
82 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAAA
ATACCCCTAATTTGT
Found at i:79464045 original size:27 final size:27
Alignment explanation
Indices: 79463814--79464091 Score: 233
Period size: 27 Copynumber: 10.3 Consensus size: 27
79463804 TTTGGTTTAC
*
79463814 AAAATTACCAAAATACCCT-GCTTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * * *
79463840 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
*
79463867 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
*
79463894 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
* *
79463921 AAAATTATCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
*
79463948 AAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACCAAAATACCCTC-GATTTGT
* ** **
79463975 GAAATTACTGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCTCGATTTGT
*** *
79464002 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * *
79464029 AAAATTACCAAAGTACCCTCAATTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
* * ****
79464056 AGAATTATCGTTTTACCCTCGATTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
79464083 AAAATTACC
1 AAAATTACC
79464092 GTTTTACCCC
Statistics
Matches: 211, Mismatches: 37, Indels: 7
0.83 0.15 0.03
Matches are distributed among these distances:
26 18 0.09
27 191 0.91
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTGT
Found at i:79464094 original size:27 final size:27
Alignment explanation
Indices: 79464042--79464357 Score: 277
Period size: 27 Copynumber: 11.8 Consensus size: 27
79464032 ATTACCAAAG
* *
79464042 TACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
79464069 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
79464096 TACCC-CAATTTACATAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
79464122 TACCC-CTAATTTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* * *
79464149 TACCC-CTGA-TTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* * *
79464175 TACCC-CTGA-TTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* * *
79464201 TATCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
79464228 TACCCTCGATTTACT-GAATTACTGTTT
1 TACCCTCGATTTA-TAGAATTACCGTTT
* **
79464255 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
79464282 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
79464309 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
79464336 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
79464358 TAAAATACCT
Statistics
Matches: 261, Mismatches: 23, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
26 73 0.28
27 188 0.72
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:79464366 original size:27 final size:27
Alignment explanation
Indices: 79464336--79464505 Score: 89
Period size: 27 Copynumber: 6.2 Consensus size: 27
79464326 ATTACTGTTT
79464336 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * * *** *
79464363 TACCTTTGGTTTGTGAAATTACCGAAAA
1 TACCCTCGATTTACAAAATTA-CTAAAA
* ** *
79464391 -ACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
79464417 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
79464444 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
79464473 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
79464500 TACCCT
1 TACCCT
79464506 TAGTTTGTAG
Statistics
Matches: 109, Mismatches: 23, Indels: 22
0.71 0.15 0.14
Matches are distributed among these distances:
26 7 0.06
27 71 0.65
28 12 0.11
29 19 0.17
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:79464613 original size:27 final size:27
Alignment explanation
Indices: 79464565--79464629 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
79464555 ACCCCTATTA
79464565 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAGTGACCGTAAAGCCCCTGTAG
* *
79464592 GGTAAAGTGACCGTGATA-CCCCTGTAT
1 GGTAAAGTGACCGT-AAAGCCCCTGTAG
*
79464619 GGTAAAATGAC
1 GGTAAAGTGAC
79464630 GAATATGCCC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 32 0.94
28 2 0.06
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.22
Consensus pattern (27 bp):
GGTAAAGTGACCGTAAAGCCCCTGTAG
Found at i:79465817 original size:25 final size:25
Alignment explanation
Indices: 79465788--79465835 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79465778 ATATAACATG
* * *
79465788 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79465813 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79465836 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79465904 original size:20 final size:20
Alignment explanation
Indices: 79465879--79465937 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
79465869 TAAATATGGT
79465879 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
79465899 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
79465919 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
79465938 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:79466015 original size:24 final size:24
Alignment explanation
Indices: 79465988--79466106 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
79465978 GAGGAAGTGA
*
79465988 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
79466012 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
79466035 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
79466059 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
79466083 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
79466107 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:79466057 original size:47 final size:48
Alignment explanation
Indices: 79465988--79466106 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
79465978 GAGGAAGTGA
79465988 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
79466035 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
79466083 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
79466107 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:79466341 original size:38 final size:37
Alignment explanation
Indices: 79466298--79466398 Score: 115
Period size: 31 Copynumber: 2.8 Consensus size: 37
79466288 TGTTTACAGT
79466298 AATATGAAATATCAAAAGGCTTCGGCCCAGTAATATGA
1 AATATGAAATAT-AAAAGGCTTCGGCCCAGTAATATGA
*
79466336 AATATG------AAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATAAAAGGCTTCGGCCCAGTAATATGA
*
79466367 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATAT-AAAA-GGCTTCGGCCCAGT
79466399 GCATGATTGA
Statistics
Matches: 53, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
31 30 0.57
38 10 0.19
39 13 0.25
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.23
Consensus pattern (37 bp):
AATATGAAATATAAAAGGCTTCGGCCCAGTAATATGA
Found at i:79466372 original size:31 final size:31
Alignment explanation
Indices: 79466294--79466375 Score: 146
Period size: 31 Copynumber: 2.6 Consensus size: 31
79466284 ATACTGTTTA
*
79466294 CAGTAATATGAAATATCAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
79466325 CAGTAATATGAAATATGAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
*
79466356 CAGTATTATGAAATATGAAA
1 CAGTAATATGAAATATGAAA
79466376 TATGAAAAGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (31 bp):
CAGTAATATGAAATATGAAAAGGCTTCGGCC
Found at i:79472556 original size:27 final size:27
Alignment explanation
Indices: 79472537--79472826 Score: 237
Period size: 27 Copynumber: 10.8 Consensus size: 27
79472527 TTTTACACTA
*
79472537 CAAGGGTATTTCGATAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
*** ***
79472564 TTGGGGTATTTTACTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
*** * * *
79472591 TGTGGGTATTTCGATAATTCTAC-ACT
1 CAAGGGTATTTCGGTAATTTTACAAAT
*
79472617 ACAAGGGTATTTCGGTAGTTTTACAAAT
1 -CAAGGGTATTTCGGTAATTTTACAAAT
** * * *
79472645 CGGGGGTATTTTGTTAATTTTGCAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
*
79472672 C-AGGAGTATTTTGGTAATTTTACAAAT
1 CAAGG-GTATTTCGGTAATTTTACAAAT
* * *
79472699 CAAGGGTATTTAGGTAATTCTAC-ACT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
79472725 GCAAGGGTATTTTGGTAATTTTAAAAAT
1 -CAAGGGTATTTCGGTAATTTTACAAAT
** * *
79472753 CAAGAATATTTTGATAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
79472780 TAGGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
*
79472807 CGAGGGT-TTTCGGTAATTTT
1 CAAGGGTATTTCGGTAATTTT
79472827 GCTAATCGAG
Statistics
Matches: 208, Mismatches: 49, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
26 19 0.09
27 182 0.88
28 7 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAT
Found at i:79472681 original size:81 final size:81
Alignment explanation
Indices: 79472537--79472826 Score: 293
Period size: 81 Copynumber: 3.6 Consensus size: 81
79472527 TTTTACACTA
* * ** * *
79472537 CAAGGGTATTTCGATAATTTTACAAATTTG-GGGTATTTTACTAATTTTACAAAT-TGTGGGTAT
1 CAAGGGTATTTCGGTAATTTTACAAA-TCGAGGGTATTTTGGTAATTTTACAAATCAG-GAGTAT
* * *
79472600 TTCGATAATTCTAC-ACT
64 TTTGATAATTTTACAAAT
* * * *
79472617 ACAAGGGTATTTCGGTAGTTTTACAAATCGGGGGTATTTTGTTAATTTTGCAAATCAGGAGTATT
1 -CAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAATCAGGAGTATT
*
79472682 TTGGTAATTTTACAAAT
65 TTGATAATTTTACAAAT
* * * * * * *
79472699 CAAGGGTATTTAGGTAATTCTAC-ACTGCAAGGGTATTTTGGTAATTTTAAAAATCAAGAATATT
1 CAAGGGTATTTCGGTAATTTTACAAAT-CGAGGGTATTTTGGTAATTTTACAAATCAGGAGTATT
79472763 TTGATAATTTTACAAAT
65 TTGATAATTTTACAAAT
* * *
79472780 TAGGGGTATTTCGGTAATTTTACAAATCGAGGGT-TTTCGGTAATTTT
1 CAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTT
79472827 GCTAATCGAG
Statistics
Matches: 173, Mismatches: 31, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
80 16 0.09
81 152 0.88
82 5 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAATCAGGAGTATTT
TGATAATTTTACAAAT
Found at i:79477094 original size:44 final size:42
Alignment explanation
Indices: 79477044--79477182 Score: 149
Period size: 44 Copynumber: 3.2 Consensus size: 42
79477034 TGTGTTTTTG
* *
79477044 TGTAAGACCACGTCTGGGACATTGGCATTGACTTATGATTTACA
1 TGTAAGACCACATCTGGGACATTGGCATCGA-TT-TGATTTACA
* *
79477088 TGTAAGACCACATCTGGGACGTTGGCATCGTATTTGATTT-CG
1 TGTAAGACCACATCTGGGACATTGGCATCG-ATTTGATTTACA
* *
79477130 TGTAAGACC-CTATCTGGGACAGTGACATCGATATTTGA-TTACA
1 TGTAAGACCAC-ATCTGGGACATTGGCATCG--ATTTGATTTACA
79477173 TGTAAGACCA
1 TGTAAGACCA
79477183 TGTCTAGGAC
Statistics
Matches: 82, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.01
42 28 0.34
43 23 0.28
44 29 0.35
45 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGACATTGGCATCGATTTGATTTACA
Found at i:79477367 original size:18 final size:18
Alignment explanation
Indices: 79477344--79477379 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
79477334 AAAAGGTAAG
79477344 TATATG-TATAAGTGATGA
1 TATATGTTATAAGT-ATGA
79477362 TATATGTTATAAGTATGA
1 TATATGTTATAAGTATGA
79477380 GAAAATATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (18 bp):
TATATGTTATAAGTATGA
Found at i:79491524 original size:43 final size:41
Alignment explanation
Indices: 79491419--79491536 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 41
79491409 TGTGTTTTCG
*
79491419 TGTAAGACCACGTCTGGGAC-GTTGGCATCGTATTTGATTTCA
1 TGTAAGACCAC-TCTGGGACAG-TGGCATCGTATTTGATTACA
*
79491461 TGTAAGACC-CTGTGTAGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCACTCTG--GGACAGTGGCATCG-TATTTGATTACA
* *
79491504 TGTAAGACCACATCTGGGACATTGGCATTGTAT
1 TGTAAGACCAC-TCTGGGACAGTGGCATCGTAT
79491537 GAGCTTTCCG
Statistics
Matches: 65, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
40 3 0.05
41 1 0.02
42 24 0.37
43 33 0.51
44 1 0.02
45 3 0.05
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (41 bp):
TGTAAGACCACTCTGGGACAGTGGCATCGTATTTGATTACA
Found at i:79493329 original size:41 final size:39
Alignment explanation
Indices: 79493280--79493413 Score: 160
Period size: 41 Copynumber: 3.3 Consensus size: 39
79493270 CGACGACAAA
*
79493280 TCAGCTATATATGGCACTTAGTGTACGAGATTGAGATAGGT
1 TCAGCTATATATGGCACTTAGTGT--GAGATTGAGATAGCT
* * *
79493321 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
1 TCAGCTATATATGGCACTTAGTGTGAGATT-GAGATAGCT
* *
79493361 TCAGCTATATATGGAAATTAGTGTGTGAGATTGAGATAGCT
1 TCAGCTATATATGGCACTTA--GTGTGAGATTGAGATAGCT
*
79493402 TCTGCTATATAT
1 TCAGCTATATAT
79493414 AACACTTTGT
Statistics
Matches: 80, Mismatches: 10, Indels: 6
0.83 0.10 0.06
Matches are distributed among these distances:
39 5 0.06
40 24 0.30
41 42 0.52
42 9 0.11
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (39 bp):
TCAGCTATATATGGCACTTAGTGTGAGATTGAGATAGCT
Found at i:79494159 original size:7 final size:7
Alignment explanation
Indices: 79494148--79494180 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
79494138 ACATTTCTAT
*
79494148 TCATCCT
1 TCATCCC
79494155 TCATCCC
1 TCATCCC
79494162 TCATCCC
1 TCATCCC
79494169 TCATCCC
1 TCATCCC
79494176 TCATC
1 TCATC
79494181 ATTCATCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.15, C:0.52, G:0.00, T:0.33
Consensus pattern (7 bp):
TCATCCC
Found at i:79494165 original size:14 final size:14
Alignment explanation
Indices: 79494148--79494187 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
79494138 ACATTTCTAT
79494148 TCATCCTTCATCCC
1 TCATCCTTCATCCC
*
79494162 TCATCCCTCATCCC
1 TCATCCTTCATCCC
*
79494176 TCATCATTCATC
1 TCATCCTTCATC
79494188 ATTCTCTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.17, C:0.47, G:0.00, T:0.35
Consensus pattern (14 bp):
TCATCCTTCATCCC
Found at i:79494186 original size:21 final size:21
Alignment explanation
Indices: 79494148--79494187 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
79494138 ACATTTCTAT
* *
79494148 TCATCCTTCATCCCTCATCCC
1 TCATCCCTCATCACTCATCCC
*
79494169 TCATCCCTCATCATTCATC
1 TCATCCCTCATCACTCATC
79494188 ATTCTCTCCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.17, C:0.47, G:0.00, T:0.35
Consensus pattern (21 bp):
TCATCCCTCATCACTCATCCC
Found at i:79497869 original size:40 final size:40
Alignment explanation
Indices: 79497824--79497990 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
79497814 CGGAATACAA
79497824 CCGGATATAACTACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACTACGTGCACGAATGCCTTCGGGTCTTAGC
* * *
79497864 CCGGATAGAA-GACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACTACGTGCACGAATGCCTTCGGGTCTTAGC
* * *
79497903 CCGGATGTAGC--CGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACTACG-T-GCACGAA-TGCCTTCGGGTCTTAGC
* * ** ** * *
79497943 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACTACGTGCACGAATGCCTTCGGGTCTTAGC
79497983 CCGGATAT
1 CCGGATAT
79497991 CATTCAATTG
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
38 1 0.01
39 37 0.36
40 62 0.60
41 2 0.02
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
CCGGATATAACTACGTGCACGAATGCCTTCGGGTCTTAGC
Found at i:79497882 original size:39 final size:40
Alignment explanation
Indices: 79497839--79497949 Score: 147
Period size: 39 Copynumber: 2.8 Consensus size: 40
79497829 TATAACTACG
79497839 TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAG-ACT
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACT
* *
79497878 TGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCGCT
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACT
* *
79497918 AGCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 TGCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
79497950 TAATTTCCAG
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
38 3 0.05
39 33 0.52
40 28 0.44
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (40 bp):
TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACT
Found at i:79500911 original size:29 final size:29
Alignment explanation
Indices: 79500878--79500951 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
79500868 CCTTCGAGCT
79500878 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
79500907 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
79500936 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
79500952 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:79500912 original size:58 final size:58
Alignment explanation
Indices: 79500819--79500951 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
79500809 ATACTCGATT
* * * * *
79500819 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
79500877 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
79500935 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
79500952 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:79508773 original size:29 final size:29
Alignment explanation
Indices: 79508740--79508813 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
79508730 CCTTCGAGCT
79508740 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
79508769 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
79508798 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
79508814 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:79508774 original size:58 final size:58
Alignment explanation
Indices: 79508681--79508813 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
79508671 ATACTCGATT
* * * * *
79508681 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
79508739 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
79508797 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
79508814 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:79514572 original size:29 final size:29
Alignment explanation
Indices: 79514539--79514612 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
79514529 GTGACGAGAT
79514539 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
79514568 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
79514597 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79514613 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:79514628 original size:29 final size:29
Alignment explanation
Indices: 79514596--79514672 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 29
79514586 CTGGAAATAT
* *
79514596 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
79514625 ATGGCACTGTGTTGTGCGGGCCTAAATCGC
1 ATGGCACTAAG-TGTGCGAGCCTAAAGCGC
79514655 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
79514673 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
29 15 0.41
30 20 0.54
31 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.35, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:79517260 original size:27 final size:28
Alignment explanation
Indices: 79517230--79517329 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
79517220 ATAGTGAGTC
79517230 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
79517257 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
79517285 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
79517316 CGCACACTTAGTGC
1 CGCACACTTAGTGC
79517330 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:79518179 original size:7 final size:7
Alignment explanation
Indices: 79518169--79518193 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
79518159 TCATCACCAC
79518169 AACATCA
1 AACATCA
79518176 AACATCA
1 AACATCA
79518183 AACATCA
1 AACATCA
79518190 AACA
1 AACA
79518194 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:79525077 original size:27 final size:28
Alignment explanation
Indices: 79525047--79525146 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
79525037 ATAGTGAGTC
79525047 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
79525074 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
79525102 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
79525133 CGCACACTTAGTGC
1 CGCACACTTAGTGC
79525147 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:79525998 original size:7 final size:7
Alignment explanation
Indices: 79525988--79526012 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
79525978 TCATCACCAC
79525988 AACATCA
1 AACATCA
79525995 AACATCA
1 AACATCA
79526002 AACATCA
1 AACATCA
79526009 AACA
1 AACA
79526013 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:79527195 original size:56 final size:56
Alignment explanation
Indices: 79527155--79527341 Score: 295
Period size: 56 Copynumber: 3.3 Consensus size: 56
79527145 ACACATATTA
* *
79527155 GAATCACATATCGATACCAACGTATGAAACGTGGACTTACTCGCACACATATATCG
1 GAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGCACACATATATCG
* *
79527211 GAATCACATATCGATGCAAACGTATTAAATGTGGACTTACTCGCACACATATATCG
1 GAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGCACACATATATCG
* *
79527267 GAATCAAATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATC-
1 GAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGCACACATATATCG
*
79527322 AAAGTCACATATCGATGCCA
1 GAA-TCACATATCGATGCCA
79527342 CATATTCTTC
Statistics
Matches: 120, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
55 2 0.02
56 118 0.98
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.25
Consensus pattern (56 bp):
GAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGCACACATATATCG
Found at i:79537048 original size:30 final size:29
Alignment explanation
Indices: 79537014--79537077 Score: 119
Period size: 30 Copynumber: 2.2 Consensus size: 29
79537004 ATGAATCGGA
79537014 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
79537044 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
79537073 AGCTT
1 AGCTT
79537078 CGGCTACTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:79539138 original size:5 final size:5
Alignment explanation
Indices: 79539128--79539152 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
79539118 AAAAATCAGT
79539128 TTTTC TTTTC TTTTC TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC
79539153 GTATAGCTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:79542750 original size:27 final size:27
Alignment explanation
Indices: 79542719--79542887 Score: 230
Period size: 27 Copynumber: 6.3 Consensus size: 27
79542709 TTGATTGATC
*
79542719 AAAATGACTATTTTGCCCTTATGTGGT
1 AAAATGACTGTTTTGCCCTTATGTGGT
*
79542746 AAAATGATTGTTTTGCCCTTATGTGGT
1 AAAATGACTGTTTTGCCCTTATGTGGT
* * *
79542773 AACATGACTGTTTTGCCCTTATATTGT
1 AAAATGACTGTTTTGCCCTTATGTGGT
* * **
79542800 AAAATAATTGTTTTGCTTTTATGTGGT
1 AAAATGACTGTTTTGCCCTTATGTGGT
* *
79542827 AAAATGATTGTTTTTCCCTTATGTGGT
1 AAAATGACTGTTTTGCCCTTATGTGGT
*
79542854 AAAATGACTGTTTTGCCTTTATGTGGT
1 AAAATGACTGTTTTGCCCTTATGTGGT
79542881 AAAATGA
1 AAAATGA
79542888 TTGAAAAGCC
Statistics
Matches: 122, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 122 1.00
ACGTcount: A:0.25, C:0.11, G:0.19, T:0.44
Consensus pattern (27 bp):
AAAATGACTGTTTTGCCCTTATGTGGT
Found at i:79542825 original size:81 final size:81
Alignment explanation
Indices: 79542737--79542890 Score: 254
Period size: 81 Copynumber: 1.9 Consensus size: 81
79542727 TATTTTGCCC
* *
79542737 TTATGTGGTAAAATGATTGTTTTGCCCTTATGTGGTAACATGACTGTTTTGCCCTTATATTGTAA
1 TTATGTGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATATGGTAA
79542802 AATAATTGTTTTGCTT
66 AATAATTGTTTTGCTT
* * *
79542818 TTATGTGGTAAAATGATTGTTTTTCCCTTATGTGGTAAAATGACTGTTTTGCCTTTATGTGGTAA
1 TTATGTGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATATGGTAA
*
79542883 AATGATTG
66 AATAATTG
79542891 AAAAGCCCCT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.24, C:0.10, G:0.20, T:0.46
Consensus pattern (81 bp):
TTATGTGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATATGGTAA
AATAATTGTTTTGCTT
Found at i:79542908 original size:81 final size:81
Alignment explanation
Indices: 79542742--79542910 Score: 203
Period size: 81 Copynumber: 2.1 Consensus size: 81
79542732 TGCCCTTATG
* *
79542742 TGGTAAAATGATTGTTTTGCCCTTATGTGGTAACATGACTGTTTTGCCCTTATATTGTAAAATAA
1 TGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATATGGTAAAATAA
**** *** **
79542807 TTGTTTTGCTTTTATG
66 TTGAAAAGCCCCTACA
* * * *
79542823 TGGTAAAATGATTGTTTTTCCCTTATGTGGTAAAATGACTGTTTTGCCTTTATGTGGTAAAATGA
1 TGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATATGGTAAAATAA
79542888 TTGAAAAGCCCCTACA
66 TTGAAAAGCCCCTACA
79542904 TGGTAAA
1 TGGTAAA
79542911 TTTACTGTTT
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.42
Consensus pattern (81 bp):
TGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATATGGTAAAATAA
TTGAAAAGCCCCTACA
Found at i:79542918 original size:54 final size:54
Alignment explanation
Indices: 79542742--79542921 Score: 144
Period size: 54 Copynumber: 3.3 Consensus size: 54
79542732 TGCCCTTATG
* * * * **** * *
79542742 TGGTAAAATGATTGTTTTGCCCTTATGTGGTAACATGACTGTTTTGCCCTTATA
1 TGGTAAAATGACTGTTTTGCCTTTATGTGGTAAAATGATTGAAAAGCCCCTACA
* * * * ***** * **
79542796 TTGTAAAATAATTGTTTTGCTTTTATGTGGTAAAATGATTGTTTTTCCCTTATG
1 TGGTAAAATGACTGTTTTGCCTTTATGTGGTAAAATGATTGAAAAGCCCCTACA
79542850 TGGTAAAATGACTGTTTTGCCTTTATGTGGTAAAATGATTGAAAAGCCCCTACA
1 TGGTAAAATGACTGTTTTGCCTTTATGTGGTAAAATGATTGAAAAGCCCCTACA
* *
79542904 TGGTAAATTTACTGTTTT
1 TGGTAAAATGACTGTTTT
79542922 TATTTTAGCA
Statistics
Matches: 104, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 104 1.00
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.44
Consensus pattern (54 bp):
TGGTAAAATGACTGTTTTGCCTTTATGTGGTAAAATGATTGAAAAGCCCCTACA
Found at i:79547816 original size:27 final size:27
Alignment explanation
Indices: 79547763--79547818 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
79547753 CATGTCCCAC
79547763 ATGGGTCAAATTTCATACATGAACCCT
1 ATGGGTCAAATTTCATACATGAACCCT
79547790 ATGGGTCAAATTTCATACATGAACCCT
1 ATGGGTCAAATTTCATACATGAACCCT
79547817 AT
1 AT
79547819 CTCGAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.30
Consensus pattern (27 bp):
ATGGGTCAAATTTCATACATGAACCCT
Found at i:79552417 original size:18 final size:19
Alignment explanation
Indices: 79552389--79552424 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
79552379 TATATATGAC
79552389 ATTGATTATTACAAAATAT
1 ATTGATTATTACAAAATAT
*
79552408 ATTG-TTATTATAAAATA
1 ATTGATTATTACAAAATA
79552425 AATTTCTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (19 bp):
ATTGATTATTACAAAATAT
Found at i:79554800 original size:51 final size:49
Alignment explanation
Indices: 79554680--79554820 Score: 183
Period size: 51 Copynumber: 2.8 Consensus size: 49
79554670 AAGGTTATTT
* * * *
79554680 GGTACGCATAGTAGCCTGCATTTAGTACTACACATGCGACCAATTATCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCC
* * * *
79554729 AGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCC
*
79554780 GGTACACATAGTAGCATGCACTTAGTACTACACACGTGACC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
79554821 TCACAATAGA
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
49 33 0.42
50 4 0.05
51 41 0.53
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.25
Consensus pattern (49 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCC
Found at i:79562049 original size:40 final size:40
Alignment explanation
Indices: 79561975--79562075 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 40
79561965 AATTATACTT
* * * *
79561975 CTGAATTGCACATATGTGCTCGTATTTGTCCTTCGGTA-CC
1 CTGAATTGCACATACGTGC-CCTATTAGTACTTCGGTACCC
*
79562015 TTGAATTGCACATACGTGACCCTATTAGTACTTCGGTACCC
1 CTGAATTGCACATACGTG-CCCTATTAGTACTTCGGTACCC
79562056 CT-AATTG-ACATACGTGCCCT
1 CTGAATTGCACATACGTGCCCT
79562076 TGTTTACACT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
38 4 0.08
39 9 0.17
40 36 0.68
41 4 0.08
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.34
Consensus pattern (40 bp):
CTGAATTGCACATACGTGCCCTATTAGTACTTCGGTACCC
Found at i:79594012 original size:29 final size:29
Alignment explanation
Indices: 79593970--79594042 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
79593960 GTGACAAGAT
79593970 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
79593999 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
79594028 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
79594043 GAATTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:79594061 original size:29 final size:29
Alignment explanation
Indices: 79594029--79594101 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
79594019 TGAAAAGTAT
* * *
79594029 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
79594058 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
79594087 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
79594102 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:79596464 original size:34 final size:38
Alignment explanation
Indices: 79596426--79596518 Score: 95
Period size: 34 Copynumber: 2.5 Consensus size: 38
79596416 TGTTACTGAG
* *
79596426 ATGGGCTTAGGCCCAAACTGATACTG-AT-ATTA-T-A
1 ATGGGCTTAGGCCCAAACTGAAAATGAATCATTACTAA
* **
79596460 ATGGGCTAAGGCCTTAACTGAAAATGAATCATTACTAAA
1 ATGGGCTTAGGCCCAAACTGAAAATGAATCATTACT-AA
*
79596499 ATGGGCTTAGGCCCAGACTG
1 ATGGGCTTAGGCCCAAACTG
79596519 TATTTGTTCA
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
34 21 0.47
35 2 0.04
36 4 0.09
37 1 0.02
39 17 0.38
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (38 bp):
ATGGGCTTAGGCCCAAACTGAAAATGAATCATTACTAA
Found at i:79618353 original size:43 final size:44
Alignment explanation
Indices: 79618286--79618456 Score: 165
Period size: 43 Copynumber: 4.0 Consensus size: 44
79618276 CTCGTACAAG
* *
79618286 GCCAACGTCCCAGAC-GTGGTCTTACATGTAATCACATATCGAT
1 GCCAATGTCCCAGACAGTGGTCTTACACGTAATCACATATCGAT
* * *
79618329 GCCACTGTCCCAGACAG-GGTCTTACACG-AA-CTCATATACAAT
1 GCCAATGTCCCAGACAGTGGTCTTACACGTAATCACATAT-CGAT
* * *
79618371 GCCAATGTCCTAGACA-TGGTCTTACACGTAAATCACAAATAGAT
1 GCCAATGTCCCAGACAGTGGTCTTACACGT-AATCACATATCGAT
* * * * *
79618415 GCCAATGTCCCATA-TGTGATCTTACATGAAATCACATATCGA
1 GCCAATGTCCCAGACAGTGGTCTTACACGTAATCACATATCGA
79618457 AATCCTATGT
Statistics
Matches: 102, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
41 6 0.06
42 30 0.29
43 34 0.33
44 27 0.26
45 5 0.05
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (44 bp):
GCCAATGTCCCAGACAGTGGTCTTACACGTAATCACATATCGAT
Found at i:79620316 original size:37 final size:36
Alignment explanation
Indices: 79620266--79620352 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
79620256 CACGAAGTCT
*
79620266 TACCCAGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79620302 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79620339 TCACCCGGAACATA
1 T-ACCCGG-ACATA
79620353 TTTCCAAGTT
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.87
38 5 0.11
ACGTcount: A:0.28, C:0.33, G:0.18, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:79620450 original size:44 final size:45
Alignment explanation
Indices: 79620401--79620539 Score: 129
Period size: 49 Copynumber: 3.0 Consensus size: 45
79620391 ATTCACATTA
* *
79620401 GCCATTCGGCTTTACCACATATACA-TATCGCATTCATCACATCG
1 GCCATTAGGCTTTACCACATATACATTATCACATTCATCACATCG
* * *
79620445 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGG-CTT-T-AC-CACATATACATTATCACATTCATCACATCG
* *
79620494 GCCATTAGGCCTTATCACATATATATACATT-TCACATTCATCACAT
1 GCCATTAGG-CTT-T-AC-CACATATACATTATCACATTCATCACAT
79620540 ACATTTTCAC
Statistics
Matches: 85, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
44 8 0.09
45 3 0.04
46 1 0.01
47 2 0.02
48 23 0.27
49 48 0.56
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (45 bp):
GCCATTAGGCTTTACCACATATACATTATCACATTCATCACATCG
Found at i:79620493 original size:49 final size:48
Alignment explanation
Indices: 79620419--79620539 Score: 215
Period size: 49 Copynumber: 2.5 Consensus size: 48
79620409 GCTTTACCAC
* *
79620419 ATATACATATCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
79620467 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
79620516 ATATACATTTCACATTCATCACAT
1 ATATACATTTCACATTCATCACAT
79620540 ACATTTTCAC
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
48 24 0.34
49 46 0.66
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.34
Consensus pattern (48 bp):
ATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:79620543 original size:20 final size:21
Alignment explanation
Indices: 79620518--79620558 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
79620508 TCACATATAT
79620518 ATACA-TTTCACATTCATCAC
1 ATACATTTTCACATTCATCAC
79620538 ATACATTTTCACATTCATCAC
1 ATACATTTTCACATTCATCAC
79620559 GTTGGCCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.34, C:0.29, G:0.00, T:0.37
Consensus pattern (21 bp):
ATACATTTTCACATTCATCAC
Found at i:79620549 original size:69 final size:70
Alignment explanation
Indices: 79620469--79620609 Score: 257
Period size: 69 Copynumber: 2.0 Consensus size: 70
79620459 TCACATATAT
79620469 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA-TTTCACATTC
1 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
79620533 ATCAC
66 ATCAC
* *
79620538 ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
79620603 ATCAC
66 ATCAC
79620608 AT
1 AT
79620610 TGGCCATTAG
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
69 52 0.75
70 17 0.25
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (70 bp):
ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
ATCAC
Found at i:79620592 original size:49 final size:49
Alignment explanation
Indices: 79620538--79620658 Score: 233
Period size: 49 Copynumber: 2.5 Consensus size: 49
79620528 CATTCATCAC
*
79620538 ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
79620587 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
79620636 ATACATTTTCACATTCATCACAT
1 ATACATTTTCACATTCATCACAT
79620659 ACATTTTCAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (49 bp):
ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
Found at i:79620606 original size:27 final size:27
Alignment explanation
Indices: 79620576--79620659 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
79620566 ATTAGGCCTT
79620576 ATCACATATATATACATTTTCACATTC
1 ATCACATATATATACATTTTCACATTC
*** **
79620603 ATCAC--AT-TGGCCATTAGGC-C-TT-
1 ATCACATATATATACATT-TTCACATTC
79620625 ATCACATATATATACATTTTCACATTC
1 ATCACATATATATACATTTTCACATTC
79620652 ATCACATA
1 ATCACATA
79620660 CATTTTCACA
Statistics
Matches: 40, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 5 0.12
23 2 0.05
24 9 0.22
25 9 0.22
26 2 0.05
27 13 0.32
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.37
Consensus pattern (27 bp):
ATCACATATATATACATTTTCACATTC
Found at i:79620662 original size:21 final size:21
Alignment explanation
Indices: 79620636--79620677 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
79620626 TCACATATAT
79620636 ATACATTTTCACATTCATCAC
1 ATACATTTTCACATTCATCAC
79620657 ATACATTTTCACATTCATCAC
1 ATACATTTTCACATTCATCAC
79620678 GTTGGCCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.38
Consensus pattern (21 bp):
ATACATTTTCACATTCATCAC
Found at i:79620663 original size:70 final size:70
Alignment explanation
Indices: 79620587--79620726 Score: 271
Period size: 70 Copynumber: 2.0 Consensus size: 70
79620577 TCACATATAT
79620587 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
79620652 ATCAC
66 ATCAC
*
79620657 ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
79620722 ATCAC
66 ATCAC
79620727 TTTGGCCATT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (70 bp):
ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
ATCAC
Found at i:79620711 original size:49 final size:49
Alignment explanation
Indices: 79620657--79620775 Score: 229
Period size: 49 Copynumber: 2.4 Consensus size: 49
79620647 CATTCATCAC
79620657 ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATAT
*
79620706 ATACATTTTCACATTCATCACTTTGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATAT
79620755 ATACATTTTCACATTCATCAC
1 ATACATTTTCACATTCATCAC
79620776 ATACATTTTC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 69 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (49 bp):
ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATAT
Found at i:79620722 original size:119 final size:119
Alignment explanation
Indices: 79620431--79620896 Score: 880
Period size: 119 Copynumber: 3.9 Consensus size: 119
79620421 ATACATATCG
* * *
79620431 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGC
1 CATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATTGGC
79620496 CATTAGGCCTTATCACATATATATACA-TTTCACATTCATCACATACATTTTCA
66 CATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATACATTTTCA
79620549 CATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATTGGC
1 CATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATTGGC
79620614 CATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATACATTTTCA
66 CATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATACATTTTCA
*
79620668 CATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACTTTGGC
1 CATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATTGGC
79620733 CATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATACATTTTCA
66 CATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATACATTTTCA
79620787 CATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATTGGC
1 CATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATTGGC
*
79620852 CATTAGGCCTTATCACATATATATACATTTTCACATTCGTCACAT
66 CATTAGGCCTTATCACATATATATACATTTTCACATTCATCACAT
79620897 TGGCCATTCG
Statistics
Matches: 341, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
118 89 0.26
119 252 0.74
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (119 bp):
CATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATTGGC
CATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATACATTTTCA
Found at i:79620780 original size:70 final size:70
Alignment explanation
Indices: 79620706--79620847 Score: 275
Period size: 70 Copynumber: 2.0 Consensus size: 70
79620696 TCACATATAT
*
79620706 ATACATTTTCACATTCATCACTTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
79620771 ATCAC
66 ATCAC
79620776 ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
79620841 ATCAC
66 ATCAC
79620846 AT
1 AT
79620848 TGGCCATTAG
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.30, C:0.25, G:0.06, T:0.38
Consensus pattern (70 bp):
ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
ATCAC
Found at i:79620781 original size:21 final size:21
Alignment explanation
Indices: 79620755--79620796 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
79620745 TCACATATAT
79620755 ATACATTTTCACATTCATCAC
1 ATACATTTTCACATTCATCAC
79620776 ATACATTTTCACATTCATCAC
1 ATACATTTTCACATTCATCAC
79620797 GTTGGCCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.38
Consensus pattern (21 bp):
ATACATTTTCACATTCATCAC
Found at i:79620924 original size:49 final size:49
Alignment explanation
Indices: 79620776--79620917 Score: 257
Period size: 49 Copynumber: 2.9 Consensus size: 49
79620766 CATTCATCAC
*
79620776 ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
79620825 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
* *
79620874 ATACATTTTCACATTCGTCACATTGGCCATTCGGCCTTATCACA
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
79620918 CGTATATGTA
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 90 1.00
ACGTcount: A:0.28, C:0.26, G:0.10, T:0.36
Consensus pattern (49 bp):
ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
Found at i:79624711 original size:40 final size:40
Alignment explanation
Indices: 79624662--79624813 Score: 250
Period size: 40 Copynumber: 3.8 Consensus size: 40
79624652 CCAGCATGAT
* * *
79624662 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
79624702 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
79624742 TGCTCTTCGAAAATTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
79624782 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
79624814 CTCAATTCTC
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:79626692 original size:37 final size:37
Alignment explanation
Indices: 79626642--79626714 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
79626632 CACGAAGTCT
79626642 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
79626679 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79626715 TCACCTGGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.33, G:0.21, T:0.22
Consensus pattern (37 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
Found at i:79626869 original size:49 final size:48
Alignment explanation
Indices: 79626795--79626964 Score: 304
Period size: 49 Copynumber: 3.5 Consensus size: 48
79626785 ACTTTACCAC
* *
79626795 ATATACATATCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
79626843 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
79626892 ATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
79626940 ATATACATTTTCACATTCATCACAT
1 ATATACA-TTTCACATTCATCACAT
79626965 ACATTTTCAC
Statistics
Matches: 118, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
48 55 0.47
49 63 0.53
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.34
Consensus pattern (48 bp):
ATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:79626968 original size:21 final size:21
Alignment explanation
Indices: 79626942--79626983 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
79626932 TCACATATAT
79626942 ATACATTTTCACATTCATCAC
1 ATACATTTTCACATTCATCAC
79626963 ATACATTTTCACATTCATCAC
1 ATACATTTTCACATTCATCAC
79626984 GTTTGCCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.38
Consensus pattern (21 bp):
ATACATTTTCACATTCATCAC
Found at i:79626976 original size:70 final size:69
Alignment explanation
Indices: 79626894--79627034 Score: 237
Period size: 70 Copynumber: 2.0 Consensus size: 69
79626884 TCACATATAT
79626894 ATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
1 ATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
79626959 TCAC
66 TCAC
* ** *
79626963 ATACATTTTCACATTCATCACGTTTGCCATTAGGCCTTATCACATATATATATATTTTCACATTC
1 ATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
79627028 ATCAC
65 ATCAC
79627033 AT
1 AT
79627035 TGGCCATTAG
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
69 5 0.07
70 62 0.93
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.38
Consensus pattern (69 bp):
ATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
TCAC
Found at i:79627021 original size:49 final size:49
Alignment explanation
Indices: 79626963--79627292 Score: 268
Period size: 49 Copynumber: 6.9 Consensus size: 49
79626953 CATTCATCAC
* *
79626963 ATACATTTTCACATTCATCACGTTTGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
* *
79627012 ATATATTTTCACATTCATCACATTGGCCATTAGGCGTTATCACATATAT
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
* ** *
79627061 ATACATTTTCACATTCATCACA-T--ACATT-TTCACATTCATCACGT-TGGCCAT
1 ATACATTTTCACATTCATCACATTGGCCATTAGGC-C-TT-ATCACATAT----AT
* * * **
79627112 -TAGGCCTTATCACATAT-ATATACATTTTCACATT----C--ATCAC------
1 ATA--CATTTTCACAT-TCAT-CACATTGGC-CATTAGGCCTTATCACATATAT
*
79627152 ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
79627201 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
* *
79627250 ATACA-TTTCACATTCGTCACATTGGCCATTCGGCCTTATCACA
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
79627293 CGTATATGTA
Statistics
Matches: 229, Mismatches: 23, Indels: 59
0.74 0.07 0.19
Matches are distributed among these distances:
37 4 0.02
38 6 0.03
39 11 0.05
41 3 0.01
43 5 0.02
45 1 0.00
46 4 0.02
47 3 0.01
48 43 0.19
49 124 0.54
50 2 0.01
51 2 0.01
52 11 0.05
53 5 0.02
54 1 0.00
57 4 0.02
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (49 bp):
ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
Found at i:79627066 original size:119 final size:118
Alignment explanation
Indices: 79626845--79627292 Score: 581
Period size: 119 Copynumber: 3.8 Consensus size: 118
79626835 TCACATATAT
* *
79626845 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTCACATTCA
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACATTTCACATTCA
*
79626910 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCAC
66 TCACATTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCAC
* * *
79626963 ATACATTTTCACATTCATCACGTTTGCCATTAGGCCTTATCACATATATATATATTTTCACATTC
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACA-TTTCACATTC
*
79627028 ATCACATTGGCCATTAGGCGTTATCACATATATATACATTTTCACATTCATCAC
65 ATCACATTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCAC
*
79627082 ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACA-TTTCACATTC
* ** * * * *
79627147 ATCACA-T--ACATT-TTCACATTCATCACGT-TGGCCAT-TAGGCCTTATCACA-T-AT-AT
65 ATCACATTGGCCATTAGGC-C-TT-ATCACATAT----ATATA--CATTTTCACATTCATCAC
*
79627201 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACATTTCACATTCG
1 ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACATTTCACATTCA
*
79627266 TCACATTGGCCATTCGGCCTTATCACA
66 TCACATTGGCCATTAGGCCTTATCACA
79627293 CGTATATGTA
Statistics
Matches: 293, Mismatches: 23, Indels: 27
0.85 0.07 0.08
Matches are distributed among these distances:
115 1 0.00
116 4 0.01
117 3 0.01
118 71 0.24
119 191 0.65
120 6 0.02
121 8 0.03
122 9 0.03
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (118 bp):
ATACATTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACATTTCACATTCA
TCACATTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCAC
Found at i:79627087 original size:21 final size:21
Alignment explanation
Indices: 79627061--79627102 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
79627051 TCACATATAT
79627061 ATACATTTTCACATTCATCAC
1 ATACATTTTCACATTCATCAC
79627082 ATACATTTTCACATTCATCAC
1 ATACATTTTCACATTCATCAC
79627103 GTTGGCCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.38
Consensus pattern (21 bp):
ATACATTTTCACATTCATCAC
Found at i:79627090 original size:70 final size:70
Alignment explanation
Indices: 79627016--79627223 Score: 398
Period size: 70 Copynumber: 3.0 Consensus size: 70
79627006 ATATATATAT
* *
79627016 ATTTTCACATTCATCACATTGGCCATTAGGCGTTATCACATATATATACATTTTCACATTCATCA
1 ATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCA
79627081 CATAC
66 CATAC
79627086 ATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCA
1 ATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCA
79627151 CATAC
66 CATAC
79627156 ATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCA
1 ATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCA
79627221 CAT
66 CAT
79627224 TGGCCATTAG
Statistics
Matches: 136, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 136 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (70 bp):
ATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCA
CATAC
Found at i:79627132 original size:189 final size:187
Alignment explanation
Indices: 79626894--79627271 Score: 684
Period size: 189 Copynumber: 2.0 Consensus size: 187
79626884 TCACATATAT
79626894 ATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
1 ATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
* *
79626959 TCACATACATTTTCACATTCATCACGTTTGCCATTAGGCCTTATCACATATATATATATTTTCAC
66 TCACATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCAC
*
79627024 ATTCATCACATTGGCCATTAGGCGTTATCACATATATATACATTTTCACATTCATCAC
131 ATTCATCACATTGGCCATTAGGCCTTATCACATATATATACA-TTTCACATTCATCAC
* *
79627082 ATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
79627147 ATCACATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCA
65 ATCACATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCA
*
79627212 CATTCATCACATTGGCCATTAGGCCTTATCACATATATATACATTTCACATTCGTCAC
130 CATTCATCACATTGGCCATTAGGCCTTATCACATATATATACATTTCACATTCATCAC
79627270 AT
1 AT
79627272 TGGCCATTCG
Statistics
Matches: 183, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
188 21 0.11
189 162 0.89
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.37
Consensus pattern (187 bp):
ATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
TCACATACATTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACATTTTCAC
ATTCATCACATTGGCCATTAGGCCTTATCACATATATATACATTTCACATTCATCAC
Found at i:79627157 original size:21 final size:21
Alignment explanation
Indices: 79627131--79627172 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
79627121 TCACATATAT
79627131 ATACATTTTCACATTCATCAC
1 ATACATTTTCACATTCATCAC
79627152 ATACATTTTCACATTCATCAC
1 ATACATTTTCACATTCATCAC
79627173 GTTGGCCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.38
Consensus pattern (21 bp):
ATACATTTTCACATTCATCAC
Found at i:79630348 original size:27 final size:26
Alignment explanation
Indices: 79630311--79630422 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
79630301 AGCATGGCTG
* *
79630311 CCAGAACAGATAATGTGACAAAGTCA
1 CCAGAACAGATAATGTGGCAAAGCCA
79630337 CCAGATACAGATAATCGTGGCAAAGCCA
1 CCAGA-ACAGATAAT-GTGGCAAAGCCA
*
79630365 CAAGAACAGATATATGTGGCAAAGCCA
1 CCAGAACAGATA-ATGTGGCAAAGCCA
* *
79630392 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAAAGCCA
79630419 CCAG
1 CCAG
79630423 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAAAGCCA
Found at i:79630403 original size:54 final size:54
Alignment explanation
Indices: 79630313--79630419 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 54
79630303 CATGGCTGCC
*
79630313 AGAACAGATAATGTGACAAAGTCACCAGATACAGATAATCGTGGCAAAGCCACA
1 AGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGGCAAAGCCACA
* * *
79630367 AGAACAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCAC
1 AGAACAGATA-ATGTGACAAAGCCACCAGATACAGATAATCGTGGCAAAGCCAC
79630420 CAGGACGCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 30 0.62
55 18 0.38
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.17
Consensus pattern (54 bp):
AGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGGCAAAGCCACA
Found at i:79634835 original size:40 final size:40
Alignment explanation
Indices: 79634752--79634959 Score: 177
Period size: 40 Copynumber: 5.2 Consensus size: 40
79634742 TGGGATTTAA
* * * * * *
79634752 CCGGATATAGTGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
79634792 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
79634832 CCGGATTTGGTAACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGTCTTAGC
79634872 CCGGATATA-TCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGT-AACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * * *
79634912 CCGGATGTAATTACTAGCA-TAATTGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACGAA-TGCCTTCGGGTCTTAGC
79634952 CCGGATAT
1 CCGGATAT
79634960 CATTCCAATG
Statistics
Matches: 136, Mismatches: 29, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
39 3 0.02
40 132 0.97
41 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79634940 original size:80 final size:80
Alignment explanation
Indices: 79634806--79634959 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
79634796 TTATAGTGAT
* * ** * * *
79634806 TCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAAGGCCTTCGGGTCTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATGTAATAACTAGCACAAAGGCCTTCAGGACTTAG
79634871 CCCGGATATATCAAC
66 CCCGGATATATCAAC
* * * **
79634886 TCGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAATTACTAGCATAATTGCCTTCAGGACTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATGTAATAACTAGCACAAAGGCCTTCAGGACTTAG
79634951 CCCGGATAT
66 CCCGGATAT
79634960 CATTCCAATG
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (80 bp):
TCGCACGAATGCCTTCGGGTCTTAACCCGGATGTAATAACTAGCACAAAGGCCTTCAGGACTTAG
CCCGGATATATCAAC
Found at i:79637268 original size:39 final size:39
Alignment explanation
Indices: 79637101--79637282 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
79637091 TCGTTCAAAC
* * ** * **
79637101 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
79637141 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
79637181 GCCTTCGGGCTTAGCCCGGATATCATAACTCGC-CAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
79637219 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
79637258 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
79637283 CTCGAACATT
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 38 0.30
39 50 0.40
40 38 0.30
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:79646196 original size:80 final size:78
Alignment explanation
Indices: 79646085--79646263 Score: 209
Period size: 80 Copynumber: 2.3 Consensus size: 78
79646075 GCTCGATTGT
* * * * **
79646085 CTTCGGGAC-TAGCCCGGTTATAGT-GATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CTTCGGGACTTAGCCCGGATATA-TCAACTCGCACGAATGCCTTCGGGTCTTAACCCGGA-TTAA
*
79646148 TAACTTGCACAAAGGC
64 TAACTAGCA-AAAGGC
* * *
79646164 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTAATT
1 CTTCGGGACTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATTAATA
* *
79646229 ACTAGCATAATGC
66 ACTAGCAAAAGGC
79646242 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
79646264 CATTCCAATG
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
78 25 0.29
79 18 0.21
80 42 0.49
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (78 bp):
CTTCGGGACTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATTAATA
ACTAGCAAAAGGC
Found at i:79646254 original size:38 final size:41
Alignment explanation
Indices: 79646114--79646261 Score: 155
Period size: 40 Copynumber: 3.7 Consensus size: 41
79646104 ATAGTGATTC
* * * *
79646114 GCACGATTGCCTTCGGGTCTTAACCCGGATT-TGGT-AACTT
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAT-ATCAACTA
* * *
79646154 GCACAAAGGCCTTCGGGTCTTAGCCCGGA-TATATCAACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTATATCAACTA
*
79646194 GCACGAATGCCTTCGGGTCTTAGCCCGGATTA-AT-TACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTATATCAACTA
* *
79646233 GCA-TAATGCCTTCGGGACTTAGCCCGGAT
1 GCACGAATGCCTTCGGGTCTTAGCCCGGAT
79646262 ATCATTCCAA
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
38 24 0.26
39 8 0.09
40 59 0.63
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (41 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATTATATCAACTA
Found at i:79652897 original size:27 final size:26
Alignment explanation
Indices: 79652862--79652973 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
79652852 AGTATGGCTG
** *
79652862 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
79652888 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
79652916 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
79652943 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
79652970 CCAG
1 CCAG
79652974 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
26 6 0.08
27 55 0.71
28 16 0.21
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:79652926 original size:54 final size:54
Alignment explanation
Indices: 79652862--79652973 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
79652852 AGTATGGCTG
* *
79652862 CCAGAACAGATA-ATGTGATAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
79652916 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
79652970 CCAG
1 CCAG
79652974 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:79661886 original size:29 final size:29
Alignment explanation
Indices: 79661853--79662009 Score: 187
Period size: 29 Copynumber: 5.6 Consensus size: 29
79661843 GTGACGAGAT
79661853 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
79661882 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
79661911 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
79661940 -GGCACT--GTGTGCGAGCTCGAAGGCTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
79661966 TGGCACTATGTGTGCGGGCT-TAAATCGA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
79661994 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79662010 AAATCGAGTA
Statistics
Matches: 112, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
26 14 0.12
27 6 0.05
28 25 0.22
29 67 0.60
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:79669072 original size:29 final size:29
Alignment explanation
Indices: 79669039--79669199 Score: 182
Period size: 29 Copynumber: 5.6 Consensus size: 29
79669029 GTGACGAGAT
79669039 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
79669068 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
79669097 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
79669126 CGGCACTGGGTGTGCGAGCTCGAAGGCTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
79669155 TGGCACTATGTGTGCGGGCT-TAAATCGA-A
1 TGGCACTAAGTGTGCGTGCTGGAAAT--ATA
79669184 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79669200 AAATCGAGTA
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
28 2 0.02
29 109 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:79675450 original size:46 final size:46
Alignment explanation
Indices: 79675290--79675453 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 46
79675280 CCGCCCCTAA
* * * *
79675290 TGAACTCGGACTCAACTCAA-GAGCTCGGGCGTTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAG
* *
79675335 TGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT-C-TCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCATAAG
*
79675382 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAG
*
79675428 TGAACTCGGACTCAACTTAACGAGTT
1 TGAACTCGGACTCAACTCAACGAGTT
79675454 TGGATGCTCA
Statistics
Matches: 98, Mismatches: 11, Indels: 19
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 22 0.22
46 30 0.31
47 28 0.29
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAG
Found at i:79675450 original size:93 final size:92
Alignment explanation
Indices: 79675291--79675460 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 92
79675281 CGCCCCTAAT
* * *
79675291 GAACTCGGACTCAACTCAAGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAAGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
79675356 GAGTTTGGATGCCTAGTTACATCTCAC
66 GAGTTTGGATGCCTAGTTACATCTCAC
* *
79675383 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTTAA
1 GAACTCGGACTCAACTCAA-GAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
79675448 CGAGTTTGGATGC
65 CGAGTTTGGATGC
79675461 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 19 0.26
93 53 0.74
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAAGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTTGGATGCCTAGTTACATCTCAC
Found at i:79675476 original size:46 final size:46
Alignment explanation
Indices: 79675285--79675476 Score: 148
Period size: 46 Copynumber: 4.2 Consensus size: 46
79675275 GTAACCCGCC
* * ** * *
79675285 CCTAA-TGAACTCGGACTCAACTCAA-GAGCTCGGGCGTTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACAT
79675328 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGC-CTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTC-A---ACAT
* * * ***
79675378 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-ACAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACAT
*
79675421 CCATAAGTGAACTCGGACTCAACTTAACGAGTTTGGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAA-CAT
79675469 CCT-AGTGA
1 CCTAAGTGA
79675477 CATGTCACTT
Statistics
Matches: 116, Mismatches: 19, Indels: 25
0.73 0.12 0.16
Matches are distributed among these distances:
43 6 0.05
44 4 0.03
45 23 0.20
46 41 0.35
47 30 0.26
48 8 0.07
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACAT
Found at i:79677237 original size:34 final size:34
Alignment explanation
Indices: 79677194--79677259 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
79677184 AAATGTGTTC
79677194 ATTTTCTTTGTTACCCAAGCCTAGCCAAACTTCA
1 ATTTTCTTTGTTACCCAAGCCTAGCCAAACTTCA
*
79677228 ATTTTCTTTGTTACCCAAGCCTATCCAAACTT
1 ATTTTCTTTGTTACCCAAGCCTAGCCAAACTT
79677260 ATAACATGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.26, C:0.29, G:0.08, T:0.38
Consensus pattern (34 bp):
ATTTTCTTTGTTACCCAAGCCTAGCCAAACTTCA
Found at i:79679536 original size:29 final size:28
Alignment explanation
Indices: 79679504--79679606 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
79679494 GTGACGAGAT
* *
79679504 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
79679533 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
79679562 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
79679591 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79679607 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:79683399 original size:13 final size:13
Alignment explanation
Indices: 79683381--79683405 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79683371 GAATTGACAT
79683381 GTGTGAAAATTTC
1 GTGTGAAAATTTC
79683394 GTGTGAAAATTT
1 GTGTGAAAATTT
79683406 TATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:79693661 original size:24 final size:27
Alignment explanation
Indices: 79693615--79693667 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 27
79693605 TCTCCTAAAC
*
79693615 TTCAATATTATTTAACTATTTAAT-TT
1 TTCAATATTATTAAACTATTTAATATT
*
79693641 TTCAAT-TTATTAAATTA-TTAATATT
1 TTCAATATTATTAAACTATTTAATATT
79693666 TT
1 TT
79693668 ATACTAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.21
25 13 0.54
26 6 0.25
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (27 bp):
TTCAATATTATTAAACTATTTAATATT
Found at i:79697645 original size:40 final size:42
Alignment explanation
Indices: 79697600--79697680 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 42
79697590 CTGGGGTTTT
*
79697600 GGACACGAGCTA-TGACACGGGCATGT-CTAGGCCGAGTGAG
1 GGACACGAGCTAGGGACACGGGCATGTGCTAGGCCGAGTGAG
* * *
79697640 GGACACGGGCTAGGGACACGGGCATGTGCTCGGCCGTGTGA
1 GGACACGAGCTAGGGACACGGGCATGTGCTAGGCCGAGTGA
79697681 AAATCCCTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 11 0.31
41 13 0.37
42 11 0.31
ACGTcount: A:0.21, C:0.23, G:0.41, T:0.15
Consensus pattern (42 bp):
GGACACGAGCTAGGGACACGGGCATGTGCTAGGCCGAGTGAG
Found at i:79697656 original size:13 final size:13
Alignment explanation
Indices: 79697638--79697662 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79697628 AGGCCGAGTG
79697638 AGGGACACGGGCT
1 AGGGACACGGGCT
79697651 AGGGACACGGGC
1 AGGGACACGGGC
79697663 ATGTGCTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.48, T:0.04
Consensus pattern (13 bp):
AGGGACACGGGCT
Found at i:79699670 original size:21 final size:20
Alignment explanation
Indices: 79699642--79699681 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
79699632 CAAAACTTGT
79699642 ATAACTATGATCAAACATTC
1 ATAACTATGATCAAACATTC
* *
79699662 ATAATCTATTATCAATCATT
1 ATAA-CTATGATCAAACATT
79699682 AAAATACATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (20 bp):
ATAACTATGATCAAACATTC
Found at i:79713486 original size:15 final size:14
Alignment explanation
Indices: 79713468--79713512 Score: 58
Period size: 13 Copynumber: 3.3 Consensus size: 14
79713458 TCTCAGTCGT
*
79713468 GTGTGACACAGAGTC
1 GTGTTACACAGA-TC
79713483 GTGTTACAC-GATC
1 GTGTTACACAGATC
79713496 GTGTTACACAG-TC
1 GTGTTACACAGATC
79713509 GTGT
1 GTGT
79713513 GTCCCCTAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 17 0.61
14 3 0.11
15 8 0.29
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (14 bp):
GTGTTACACAGATC
Found at i:79720742 original size:27 final size:27
Alignment explanation
Indices: 79720712--79720766 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
79720702 TGACTTAACT
79720712 CGTTGTTTTTACATTCAAGGTATGTAA
1 CGTTGTTTTTACATTCAAGGTATGTAA
79720739 CGTTGTTTTTACATTCAAGGTATGTAA
1 CGTTGTTTTTACATTCAAGGTATGTAA
79720766 C
1 C
79720767 ACCCCAAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (27 bp):
CGTTGTTTTTACATTCAAGGTATGTAA
Found at i:79730551 original size:41 final size:41
Alignment explanation
Indices: 79730506--79730717 Score: 279
Period size: 41 Copynumber: 5.2 Consensus size: 41
79730496 AAGAATATTA
*
79730506 TGAATTGCACATACCTGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
79730547 TGAATTGCACATATGTGCCCCTG-TTGTACTCCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
79730587 TAAATAGCACATACGTGCACCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
79730628 TGAATTGCACATACGTGCCCCTGTGTGTACTAT-GATACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACT-TCGGTACCCC
* * * *
79730669 TGAATTGCACATATGTGCTCCT-ATTGTACTTTGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
79730709 TGAA-TGCAC
1 TGAATTGCAC
79730718 TTTTGTGCCC
Statistics
Matches: 150, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 6 0.04
40 52 0.35
41 91 0.61
42 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.18, T:0.31
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:79730647 original size:81 final size:82
Alignment explanation
Indices: 79730512--79730717 Score: 283
Period size: 81 Copynumber: 2.5 Consensus size: 82
79730502 ATTATGAATT
* * *
79730512 GCACATACCTGCCCCTGTTTGTACTTCGGTACCCCTGAATTGCACATATGTGCCCCTGT-TGTAC
1 GCACATACGTGCACCTGTTTGTACTTCGGTACCCCTGAATTGCACATACGTGCCCCTGTGTGTAC
* *
79730576 TCCGGTACCCCTAAATA
66 TACGATACCCCTAAATA
79730593 GCACATACGTGCACCTGTTTGTACTTCGGTACCCCTGAATTGCACATACGTGCCCCTGTGTGTAC
1 GCACATACGTGCACCTGTTTGTACTTCGGTACCCCTGAATTGCACATACGTGCCCCTGTGTGTAC
* * *
79730658 TATGATACCCCTGAATT
66 TACGATACCCCTAAATA
* * * *
79730675 GCACATATGTGCTCCT-ATTGTACTTTGGTACCCCTGAA-TGCAC
1 GCACATACGTGCACCTGTTTGTACTTCGGTACCCCTGAATTGCAC
79730718 TTTTGTGCCC
Statistics
Matches: 112, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
80 5 0.04
81 76 0.68
82 31 0.28
ACGTcount: A:0.20, C:0.31, G:0.18, T:0.31
Consensus pattern (82 bp):
GCACATACGTGCACCTGTTTGTACTTCGGTACCCCTGAATTGCACATACGTGCCCCTGTGTGTAC
TACGATACCCCTAAATA
Done.