Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 266 of 770
Found at i:80048828 original size:20 final size:20
Alignment explanation
Indices: 80048789--80048828 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
80048779 AAACTTCTTC
* *
80048789 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
80048809 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
80048829 TTATTATTAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:80049214 original size:108 final size:110
Alignment explanation
Indices: 80049061--80049261 Score: 284
Period size: 108 Copynumber: 1.8 Consensus size: 110
80049051 ATCCTTTTGA
* * *
80049061 AACTTACCATTGCCATGTCTTGACATGGTCTTACATCGTAGCCTTGCCTTATGA-A-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGATCATACATCGTAGCCTTGCCTTA-GAGACCTCACCAA
*
80049124 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTACCTTATAGT
65 TTGCCATGCCTTGGCATGGCCTTACATGGGACCTTTACCTTATAGT
* ** *
80049169 AACTTATCAATGCCATGTCTTGACATGATCATACAT-GATTTCCTTGCCTTAGAGACCTTACCAA
1 AACTTACCAATGCCATGTCTTGACATGATCATACATCG-TAGCCTTGCCTTAGAGACCTCACCAA
80049233 TTGCCATGCCTTGGCATGGCCTTACATGG
65 TTGCCATGCCTTGGCATGGCCTTACATGG
80049262 TATCCTTGAA
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
107 3 0.04
108 44 0.54
109 7 0.09
110 27 0.33
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGATCATACATCGTAGCCTTGCCTTAGAGACCTCACCAAT
TGCCATGCCTTGGCATGGCCTTACATGGGACCTTTACCTTATAGT
Found at i:80049219 original size:55 final size:53
Alignment explanation
Indices: 80049061--80049269 Score: 186
Period size: 55 Copynumber: 3.8 Consensus size: 53
80049051 ATCCTTTTGA
* * *
80049061 AACTTACCATTGCCATGTCTTGACATGGTCTTACATCGTAGCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTAACCTTGCCTTATAG
* * ** *
80049114 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTACCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGTAACC-TTGCCTTATAG
* * * * ** *
80049168 TAACTTATCAATGCCATGTCTTGACATGATCATACATGATTTCCTTGCCTTAGAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-TAACCTTGCCTTATAG
* * * *
80049223 ACCTTACCAATTGCCATGCCTTGGCATGGCCTTACATGGTATCCTTG
1 AACTTACCAA-TGCCATGCCTTGACATGGTCTTACAT-GTAACCTTG
80049270 AACCCTAATG
Statistics
Matches: 123, Mismatches: 27, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
52 3 0.02
53 40 0.33
54 9 0.07
55 68 0.55
56 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.33
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGTAACCTTGCCTTATAG
Found at i:80055720 original size:16 final size:16
Alignment explanation
Indices: 80055701--80055731 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80055691 CTTCTTCACT
80055701 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
80055717 TACTTACTTACTTAA
1 TACTCACTTACTTAA
80055732 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:80055737 original size:20 final size:20
Alignment explanation
Indices: 80055698--80055737 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
80055688 AAACTTCTTC
* *
80055698 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
80055718 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
80055738 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:80056054 original size:53 final size:53
Alignment explanation
Indices: 80055922--80056173 Score: 243
Period size: 53 Copynumber: 4.8 Consensus size: 53
80055912 TACGCGGTAC
* * * * *
80055922 CTTACCATTACCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
* * *
80055971 CTTACCATTGCCATGTCTTGACAT-GTCTTACATGGTAGCCTTGCCTTATGAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
* * *
80056023 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G-AA
* * * *
80056078 CTTATCAATGCCATGTCTTGACATGGTCTTAC-TGATTTCCTTGCCTTA-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
*
80056129 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
80056174 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 22, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
48 14 0.08
49 22 0.13
51 2 0.01
52 34 0.20
53 45 0.27
54 19 0.11
55 32 0.19
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
Found at i:80056120 original size:107 final size:108
Alignment explanation
Indices: 80055969--80056166 Score: 303
Period size: 107 Copynumber: 1.8 Consensus size: 108
80055959 ATCCTTTTGA
* *
80055969 AACTTACCATTGCCATGTCTTGACATGTCTTACATGGTAGCCTTGCCTTATGAA-CTCACCAA-T
1 AACTTACCAATGCCATGTCTTGACATGTCTTACATGATAGCCTTGCCTTA-GAACCTCACCAATT
80056032 GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
80056076 AACTTATCAATGCCATGTCTTGACATGGTCTTAC-TGATTTCCTTGCCTTAGAACCTTACCAATT
1 AACTTACCAATGCCATGTCTTGACAT-GTCTTACATGATAGCCTTGCCTTAGAACCTCACCAATT
80056140 GCCATGCCTTGGCATGGTCTTACATGG
65 GCCATGCCTTGGCATGGTCTTACATGG
80056167 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
106 3 0.04
107 44 0.54
108 35 0.43
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (108 bp):
AACTTACCAATGCCATGTCTTGACATGTCTTACATGATAGCCTTGCCTTAGAACCTCACCAATTG
CCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:80059702 original size:26 final size:28
Alignment explanation
Indices: 80059672--80059723 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
80059662 GAGAGATGCC
* *
80059672 AAGTATTTACTGA-TCAT-AAGAGTTTA
1 AAGTATCTAATGACTCATAAAGAGTTTA
80059698 AAGTATCTAATGACTCATAAAGAGTT
1 AAGTATCTAATGACTCATAAAGAGTT
80059724 GAATTTGAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.50
27 4 0.18
28 7 0.32
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (28 bp):
AAGTATCTAATGACTCATAAAGAGTTTA
Found at i:80066270 original size:40 final size:40
Alignment explanation
Indices: 80066143--80066272 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
80066133 ATGCTGGAAA
* *
80066143 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
80066183 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
80066223 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
80066263 TTATATCCGG
1 TTATATCCGG
80066273 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:80069225 original size:28 final size:28
Alignment explanation
Indices: 80069160--80069260 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
80069150 ATAGTGAATC
*
80069160 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
80069189 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
80069217 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
80069247 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80069261 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:80069309 original size:29 final size:29
Alignment explanation
Indices: 80069248--80069377 Score: 165
Period size: 29 Copynumber: 4.5 Consensus size: 29
80069238 TTTTAAACCC
*** *
80069248 GCACACTTAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
80069276 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
*
80069306 GCACACTTAGTGCCACATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
80069335 GCACACTTAGTGCCATATATTT-CAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
80069363 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
80069378 ATCTCGTCAC
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
28 21 0.24
29 66 0.75
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:80080190 original size:40 final size:40
Alignment explanation
Indices: 80080082--80080251 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
80080072 CGGGATTTAA
* * * * *
80080082 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80080122 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80080162 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80080202 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80080242 CCGGATATAT
1 CCGGATATAT
80080252 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80088282 original size:40 final size:40
Alignment explanation
Indices: 80088174--80088343 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
80088164 CGGGATTTAA
* * * * *
80088174 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80088214 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80088254 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80088294 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80088334 CCGGATATAT
1 CCGGATATAT
80088344 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80094880 original size:28 final size:29
Alignment explanation
Indices: 80094832--80094894 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
80094822 GTGATAGAGT
*
80094832 CACCAGATACAGATATTTTGTGGCAGT-GC
1 CACCAGATACAGATAATTTGTGGCA-TAGC
80094861 CACCAGA-ACAGATAATTTGTGGCATAGC
1 CACCAGATACAGATAATTTGTGGCATAGC
80094889 CACCAG
1 CACCAG
80094895 GACGCTTCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (29 bp):
CACCAGATACAGATAATTTGTGGCATAGC
Found at i:80095047 original size:28 final size:28
Alignment explanation
Indices: 80095000--80095064 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
80094990 AAATTAACCC
*
80095000 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
80095028 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
80095056 TAGGGGTAT
1 TAGGGGTAT
80095065 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:80102619 original size:24 final size:24
Alignment explanation
Indices: 80102589--80102748 Score: 223
Period size: 24 Copynumber: 6.7 Consensus size: 24
80102579 CAGATTTGAG
80102589 TGGCACTATGTGTGCGTAATTGTA
1 TGGCACTATGTGTGCGTAATTGTA
* * *
80102613 TGACACTATATGTGCGTATTTGTA
1 TGGCACTATGTGTGCGTAATTGTA
*
80102637 TGGCACTATGTGTGCGTATTTGTA
1 TGGCACTATGTGTGCGTAATTGTA
* *
80102661 TGGCACTATGTGTGTGTATTTGTA
1 TGGCACTATGTGTGCGTAATTGTA
*
80102685 TGGCACTATGTGTGCAT-ATATGTA
1 TGGCACTATGTGTGCGTAAT-TGTA
* *
80102709 TGGCACTATGTGTGCGTAATTATT
1 TGGCACTATGTGTGCGTAATTGTA
80102733 TGGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
80102749 GAGTTGAATC
Statistics
Matches: 122, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
23 1 0.01
24 119 0.98
25 2 0.02
ACGTcount: A:0.20, C:0.12, G:0.28, T:0.40
Consensus pattern (24 bp):
TGGCACTATGTGTGCGTAATTGTA
Found at i:80102718 original size:12 final size:12
Alignment explanation
Indices: 80102633--80102719 Score: 54
Period size: 12 Copynumber: 7.2 Consensus size: 12
80102623 TGTGCGTATT
80102633 TGTATGGCACTA
1 TGTATGGCACTA
* * *
80102645 TGTGTGCGTA-TT
1 TGTATG-GCACTA
80102657 TGTATGGCACTA
1 TGTATGGCACTA
* * *
80102669 TGTGTGTGTA-TT
1 TGTATG-GCACTA
80102681 TGTATGGCACTA
1 TGTATGGCACTA
* *
80102693 TGTGT-GCATATA
1 TGTATGGCA-CTA
80102705 TGTATGGCACTA
1 TGTATGGCACTA
80102717 TGT
1 TGT
80102720 GTGCGTAATT
Statistics
Matches: 53, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
11 7 0.13
12 39 0.74
13 7 0.13
ACGTcount: A:0.20, C:0.11, G:0.28, T:0.41
Consensus pattern (12 bp):
TGTATGGCACTA
Found at i:80107330 original size:8 final size:8
Alignment explanation
Indices: 80107319--80107343 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
80107309 AGCACATGAA
80107319 ATTATGTG
1 ATTATGTG
80107327 ATTATGTG
1 ATTATGTG
80107335 ATTATGTG
1 ATTATGTG
80107343 A
1 A
80107344 ATCCGAGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (8 bp):
ATTATGTG
Found at i:80110014 original size:42 final size:41
Alignment explanation
Indices: 80109920--80110167 Score: 365
Period size: 42 Copynumber: 6.0 Consensus size: 41
80109910 TAAAGCCTAG
* * * **
80109920 TATAATACACCAGCACAGAA-CCTGTTAGGCAATAGGCCTAA
1 TATAATACACCAGCATA-AAGCCTGCTAGGCAATAAGCCCGA
*
80109961 TATAATACACCAGTATAAAGCCTGCTAGGCAATAAAGCCCGA
1 TATAATACACCAGCATAAAGCCTGCTAGGCAAT-AAGCCCGA
80110003 TATAATACACCAGCATAAAGCCTGCTAGGCAAT-AGCCCGA
1 TATAATACACCAGCATAAAGCCTGCTAGGCAATAAGCCCGA
**
80110043 TATAATACACCAGCATAAAGCCTGCTAGGCAATGAAGCCTAA
1 TATAATACACCAGCATAAAGCCTGCTAGGCAAT-AAGCCCGA
80110085 TATAATACACCAGCATAAAGCCTGCTAGGCAATAAGCCCGA
1 TATAATACACCAGCATAAAGCCTGCTAGGCAATAAGCCCGA
*
80110126 TATAATACACCAGCATAAAGCATGCTAGGCAATAAAGCCCGA
1 TATAATACACCAGCATAAAGCCTGCTAGGCAAT-AAGCCCGA
80110168 ATATCACCGA
Statistics
Matches: 190, Mismatches: 12, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
40 42 0.22
41 65 0.34
42 83 0.44
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.18
Consensus pattern (41 bp):
TATAATACACCAGCATAAAGCCTGCTAGGCAATAAGCCCGA
Found at i:80110066 original size:82 final size:82
Alignment explanation
Indices: 80109920--80110167 Score: 381
Period size: 82 Copynumber: 3.0 Consensus size: 82
80109910 TAAAGCCTAG
* * ** *
80109920 TATAATACACCAGCACAGAA-CCTGTTAGGCAATAGGCCTAATATAATACACCAGTATAAAGCCT
1 TATAATACACCAGCATA-AAGCCTGCTAGGCAATA-GCCCGATATAATACACCAGCATAAAGCCT
80109984 GCTAGGCAATAAAGCCCGA
64 GCTAGGCAATAAAGCCCGA
80110003 TATAATACACCAGCATAAAGCCTGCTAGGCAATAGCCCGATATAATACACCAGCATAAAGCCTGC
1 TATAATACACCAGCATAAAGCCTGCTAGGCAATAGCCCGATATAATACACCAGCATAAAGCCTGC
* **
80110068 TAGGCAATGAAGCCTAA
66 TAGGCAATAAAGCCCGA
*
80110085 TATAATACACCAGCATAAAGCCTGCTAGGCAATAAGCCCGATATAATACACCAGCATAAAGCATG
1 TATAATACACCAGCATAAAGCCTGCTAGGCAAT-AGCCCGATATAATACACCAGCATAAAGCCTG
80110150 CTAGGCAATAAAGCCCGA
65 CTAGGCAATAAAGCCCGA
80110168 ATATCACCGA
Statistics
Matches: 151, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
82 77 0.51
83 74 0.49
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.18
Consensus pattern (82 bp):
TATAATACACCAGCATAAAGCCTGCTAGGCAATAGCCCGATATAATACACCAGCATAAAGCCTGC
TAGGCAATAAAGCCCGA
Found at i:80110144 original size:123 final size:123
Alignment explanation
Indices: 80109920--80110159 Score: 403
Period size: 123 Copynumber: 2.0 Consensus size: 123
80109910 TAAAGCCTAG
* * *
80109920 TATAATACACCAGCACAGAACCTGTTAGGCAATAGGCCTAATATAATACACCAGTATAAAGCCTG
1 TATAATACACCAGCACAGAACCTGCTAGGCAATAAGCCTAATATAATACACCAGCATAAAGCCTG
*
80109985 CTAGGCAATAAAGCCCGATATAATACACCAGCATAAAGCCTGCTAGGCAATAGCCCGA
66 CTAGGCAATAAAGCCCGATATAATACACCAGCATAAAGCATGCTAGGCAATAGCCCGA
*
80110043 TATAATACACCAGCATA-AAGCCTGCTAGGCAATGAAGCCTAATATAATACACCAGCATAAAGCC
1 TATAATACACCAGCACAGAA-CCTGCTAGGCAAT-AAGCCTAATATAATACACCAGCATAAAGCC
80110107 TGCTAGGCAAT-AAGCCCGATATAATACACCAGCATAAAGCATGCTAGGCAATA
64 TGCTAGGCAATAAAGCCCGATATAATACACCAGCATAAAGCATGCTAGGCAATA
80110160 AAGCCCGAAT
Statistics
Matches: 110, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
122 2 0.02
123 69 0.63
124 39 0.35
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.19
Consensus pattern (123 bp):
TATAATACACCAGCACAGAACCTGCTAGGCAATAAGCCTAATATAATACACCAGCATAAAGCCTG
CTAGGCAATAAAGCCCGATATAATACACCAGCATAAAGCATGCTAGGCAATAGCCCGA
Found at i:80111671 original size:19 final size:19
Alignment explanation
Indices: 80111625--80111672 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
80111615 GTATATATTT
80111625 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
80111643 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
80111662 TAAGTTTTATT
1 TAAATTTTATT
80111673 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:80111749 original size:42 final size:42
Alignment explanation
Indices: 80111689--80111774 Score: 147
Period size: 42 Copynumber: 2.0 Consensus size: 42
80111679 CTAGGAATAT
80111689 TTTTATTTTATCGTTTAGTAGTTTATTAGAATAAGAGAACTA
1 TTTTATTTTATCGTTTAGTAGTTTATTAGAATAAGAGAACTA
*
80111731 TTTTCTTTTAT-GTTTTAGTAGTTTATTAGAATAAGAGAACTA
1 TTTTATTTTATCG-TTTAGTAGTTTATTAGAATAAGAGAACTA
80111773 TT
1 TT
80111775 GTCCCAATTA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
41 1 0.02
42 41 0.98
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.50
Consensus pattern (42 bp):
TTTTATTTTATCGTTTAGTAGTTTATTAGAATAAGAGAACTA
Found at i:80119342 original size:42 final size:42
Alignment explanation
Indices: 80119283--80119371 Score: 160
Period size: 42 Copynumber: 2.1 Consensus size: 42
80119273 CTAGGAATAT
*
80119283 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
*
80119325 TTTTCTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
80119367 TTTTC
1 TTTTC
80119372 CCAATTAGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.28, C:0.06, G:0.15, T:0.52
Consensus pattern (42 bp):
TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
Found at i:80122388 original size:47 final size:47
Alignment explanation
Indices: 80122329--80122721 Score: 653
Period size: 47 Copynumber: 8.4 Consensus size: 47
80122319 GATGTACAAG
* *
80122329 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
80122376 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
80122423 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
80122470 GTGTATATATGTGATAAGGCC-AATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
80122516 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
80122563 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
80122610 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
80122657 GTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
80122704 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
80122722 TCCCGAAGGG
Statistics
Matches: 326, Mismatches: 19, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 44 0.13
47 282 0.87
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:80122648 original size:187 final size:188
Alignment explanation
Indices: 80122329--80122721 Score: 689
Period size: 187 Copynumber: 2.1 Consensus size: 188
80122319 GATGTACAAG
80122329 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * * * *
80122394 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGA
66 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGA
*
80122459 TGAATGTGAAAGTGTATATATGTGATAAGGCC-AATGGCCAATGTGATGAATGTGAAA
131 TGAATGTGAAAGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
80122516 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
80122581 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACGTGA
66 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGA
*
80122646 TGAATGTGAAAGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
131 TGAATGTGAAAGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
80122704 GTGTATAAATGTGATAAG
1 GTGTGTATATGTGATAAG
80122722 TCCCGAAGGG
Statistics
Matches: 195, Mismatches: 10, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
187 155 0.79
188 40 0.21
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (188 bp):
GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGA
TGAATGTGAAAGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:80124634 original size:40 final size:40
Alignment explanation
Indices: 80124575--80125006 Score: 668
Period size: 40 Copynumber: 10.8 Consensus size: 40
80124565 CAGTATGTTA
*
80124575 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * *
80124615 TATCCGGACTAGGTTCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
80124655 TATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
80124695 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * * *
80124735 TATCTGGACTAGGTTCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
80124775 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * *
80124815 TATCCGGACTAGGTTCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * *
80124855 TATCTGGGCTAGGTTCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
80124895 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
80124935 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
80124975 TATCAGGGCTAAGCCCCGAAG-GCATTCGTGCT
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
80125007 TGGACAAAAT
Statistics
Matches: 357, Mismatches: 35, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
39 11 0.03
40 346 0.97
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
Found at i:80126639 original size:80 final size:80
Alignment explanation
Indices: 80126555--80126703 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80126545 TATGGTAACC
* * * *
80126555 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80126619 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80126635 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80126700 CCGG
66 CCGG
80126704 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:80126645 original size:40 final size:38
Alignment explanation
Indices: 80126596--80126703 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80126586 ATCACGATTT
*
80126596 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80126636 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80126676 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80126704 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80132312 original size:47 final size:47
Alignment explanation
Indices: 80132253--80132644 Score: 653
Period size: 47 Copynumber: 8.4 Consensus size: 47
80132243 GATGTACAAG
* *
80132253 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
80132300 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
80132347 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
80132394 GTGTATATATGTGATAAGGCC-AATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
80132440 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
80132487 GTGTATATATGTGATAAGGCC-AATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
80132533 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
80132580 GTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
80132627 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
80132645 TCCCGAAGGG
Statistics
Matches: 325, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 89 0.27
47 236 0.73
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:80132463 original size:140 final size:140
Alignment explanation
Indices: 80132253--80132644 Score: 651
Period size: 140 Copynumber: 2.8 Consensus size: 140
80132243 GATGTACAAG
* * *
80132253 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* *
80132318 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC-AATGGCCAATGTGA
80132383 TGAATGTGAAA
130 TGAATGTGAAA
*
80132394 GTGTATATATGTGATAAGGCC-AATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
80132458 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAATGGCCAATGTGAT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAATGGCCAATGTGAT
80132523 GAATGTGAAA
131 GAATGTGAAA
* * *
80132533 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGAGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * *
80132598 GCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
80132645 TCCCGAAGGG
Statistics
Matches: 236, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
139 45 0.19
140 171 0.72
141 20 0.08
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (140 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAATGGCCAATGTGAT
GAATGTGAAA
Found at i:80132481 original size:93 final size:94
Alignment explanation
Indices: 80132253--80132644 Score: 680
Period size: 93 Copynumber: 4.2 Consensus size: 94
80132243 GATGTACAAG
80132253 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
80132318 GCCTAATGGCCAATGTGATGAATGTGAAA
66 GCCGAATGGCCAATGTGATGAATGTGAAA
80132347 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
80132412 GCC-AATGGCCAATGTGATGAATGTGAAA
66 GCCGAATGGCCAATGTGATGAATGTGAAA
80132440 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
80132505 GCC-AATGGCCAATGTGATGAATGTGAAA
66 GCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
80132533 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGAGATAAG
1 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
80132598 GCCGAATGGCCAATGTGATGGATGTGAAA
66 GCCGAATGGCCAATGTGATGAATGTGAAA
* *
80132627 GTGTATAAATGTGATAAG
1 GTGTGTATATGTGATAAG
80132645 TCCCGAAGGG
Statistics
Matches: 289, Mismatches: 8, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
93 180 0.62
94 109 0.38
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:80150323 original size:49 final size:50
Alignment explanation
Indices: 80150251--80150352 Score: 188
Period size: 49 Copynumber: 2.1 Consensus size: 50
80150241 ACGCTACTCT
*
80150251 CCACCCGTACCAACCAACACACCATGT-GGGAATAACTCAACCCACCCAA
1 CCACCCGTACCAACCAACACACCATATGGGGAATAACTCAACCCACCCAA
80150300 CCACCCGTACCAACCAACACACCATATGGGGAATAACTCAACCCACCCAA
1 CCACCCGTACCAACCAACACACCATATGGGGAATAACTCAACCCACCCAA
80150350 CCA
1 CCA
80150353 ACACACCTGG
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 26 0.51
50 25 0.49
ACGTcount: A:0.37, C:0.43, G:0.10, T:0.10
Consensus pattern (50 bp):
CCACCCGTACCAACCAACACACCATATGGGGAATAACTCAACCCACCCAA
Found at i:80150438 original size:25 final size:26
Alignment explanation
Indices: 80150397--80150506 Score: 147
Period size: 26 Copynumber: 4.3 Consensus size: 26
80150387 CTGGAGGCCT
80150397 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTAAATAAACTGGGGCATA
***
80150421 AGCCCTTTTTGGTAAACTGGGGCATA
1 AGCCCTTTTAAATAAACTGGGGCATA
80150447 AGCCCTTTTAAATAAACTGGGGCATA
1 AGCCCTTTTAAATAAACTGGGGCATA
*
80150473 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTAAATAAACTGGGGCATA
80150499 A-CCCTTTT
1 AGCCCTTTT
80150507 GCACTTCCTC
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
23 5 0.06
24 5 0.06
25 17 0.22
26 50 0.65
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTAAATAAACTGGGGCATA
Found at i:80150536 original size:25 final size:25
Alignment explanation
Indices: 80150508--80150559 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
80150498 AACCCTTTTG
80150508 CACTTCCTCCATCCATATAAAAACC
1 CACTTCCTCCATCCATATAAAAACC
80150533 CACTTCCTCCATCCATATAAAAACC
1 CACTTCCTCCATCCATATAAAAACC
80150558 CA
1 CA
80150560 ACCCAATGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.40, G:0.00, T:0.23
Consensus pattern (25 bp):
CACTTCCTCCATCCATATAAAAACC
Found at i:80150606 original size:20 final size:20
Alignment explanation
Indices: 80150581--80150627 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
80150571 TTATGAATAC
80150581 ATCATGTGCATATCATAT-A
1 ATCATGTGCATATCATATCA
80150600 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
80150621 ATCATGT
1 ATCATGT
80150628 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 25 0.96
21 1 0.04
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:80151002 original size:20 final size:21
Alignment explanation
Indices: 80150977--80151017 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
80150967 AAGGGCCCGA
*
80150977 CAGCCCATTG-GGCCCAACTT
1 CAGCCCATCGAGGCCCAACTT
*
80150997 CAGCCCCTCGAGGCCCAACTT
1 CAGCCCATCGAGGCCCAACTT
80151018 ACCGTAATGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.20, C:0.44, G:0.20, T:0.17
Consensus pattern (21 bp):
CAGCCCATCGAGGCCCAACTT
Found at i:80158744 original size:26 final size:26
Alignment explanation
Indices: 80158691--80158821 Score: 198
Period size: 26 Copynumber: 5.2 Consensus size: 26
80158681 GGCCTAACCT
80158691 CTTTT-AAT-AACTGGGGCA-AAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
**
80158714 CTTTTCGGTAAACTGGGGCATAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
80158740 CTTTTCAATAAACTGGGGCATAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
* *
80158766 CCTTTCAATAAACTGGGGCATAAACC
1 CTTTTCAATAAACTGGGGCATAAGCC
80158792 CTTTTCAATAAACTGGGGCAT-AGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
80158817 CTTTT
1 CTTTT
80158822 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.05
24 1 0.01
25 18 0.19
26 73 0.75
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
CTTTTCAATAAACTGGGGCATAAGCC
Found at i:80158881 original size:20 final size:20
Alignment explanation
Indices: 80158856--80158902 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
80158846 CCCAAAATAC
80158856 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
80158875 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
80158896 ATCATGT
1 ATCATGT
80158903 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:80158966 original size:25 final size:25
Alignment explanation
Indices: 80158938--80158985 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80158928 ATAAGTAAAC
* * *
80158938 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
80158963 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
80158986 CATAATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:80174552 original size:84 final size:83
Alignment explanation
Indices: 80174395--80174553 Score: 228
Period size: 84 Copynumber: 1.9 Consensus size: 83
80174385 GTTCTAGACA
* * ** ** *
80174395 TGGTCTTCACTGGCTTACATATTGAGGCTGATGTCATGTCCCGGACACGGTCTTATACTAGCTCT
1 TGGTCTTCACTAGCTCACATATTGAGGCCAATGTCATGTCCCAAACACGGTCTTACACTAGCTCT
80174460 CATAACAATGTCGATACT
66 CATAACAATGTCGATACT
* *
80174478 TGGTCTTACACTAGCTCACATATTGAGGCCAATGTCGTGTCCCAAACATGGTCTTACACTAGCTC
1 TGGTCTT-CACTAGCTCACATATTGAGGCCAATGTCATGTCCCAAACACGGTCTTACACTAGCTC
80174543 TCATAACAATG
65 TCATAACAATG
80174554 CTGATGCAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
83 7 0.11
84 59 0.89
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (83 bp):
TGGTCTTCACTAGCTCACATATTGAGGCCAATGTCATGTCCCAAACACGGTCTTACACTAGCTCT
CATAACAATGTCGATACT
Found at i:80174571 original size:48 final size:48
Alignment explanation
Indices: 80174478--80174641 Score: 143
Period size: 48 Copynumber: 3.4 Consensus size: 48
80174468 TGTCGATACT
*** ** *
80174478 TGGTCTTACACTAGCTCACATATTGAGGCCAATGTC-GTGTCCCAAACA
1 TGGTCTTACACTAGCTCACATAACAAGGCTGATG-CAATGTCCCAAACA
* * *
80174526 TGGTCTTACACTAGCTCTCATAACAATGCTGATGCAATG-CTCCAAAAA
1 TGGTCTTACACTAGCTCACATAACAAGGCTGATGCAATGTC-CCAAACA
* *** * * *
80174574 TGGTCTTACACTGGCTCACATATTGAGGTTGATGCCATGTCCCAGACA
1 TGGTCTTACACTAGCTCACATAACAAGGCTGATGCAATGTCCCAAACA
*
80174622 TGGTCTTACACTAGCCCACA
1 TGGTCTTACACTAGCTCACA
80174642 AATAACCCTA
Statistics
Matches: 92, Mismatches: 21, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
47 2 0.02
48 89 0.97
49 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
TGGTCTTACACTAGCTCACATAACAAGGCTGATGCAATGTCCCAAACA
Found at i:80177101 original size:40 final size:39
Alignment explanation
Indices: 80177057--80177182 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
80177047 GGGACTCAAC
*
80177057 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
80177097 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
80177137 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
80177177 CCGGAT
1 CCGGAT
80177183 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:80177141 original size:80 final size:80
Alignment explanation
Indices: 80176996--80177182 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
80176986 GCTACACATT
* * *
80176996 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
80177060 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
80177076 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
80177139 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
80177157 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
80177183 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:80183179 original size:28 final size:28
Alignment explanation
Indices: 80183142--80183200 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
80183132 AGTGAGCTTT
* *
80183142 GGAGCTCTTTATAATTGTGATAGAATCA
1 GGAGCGCTTTATAACTGTGATAGAATCA
*
80183170 GGAGCGCTTTATAGCTGTGATAGAATCA
1 GGAGCGCTTTATAACTGTGATAGAATCA
80183198 GGA
1 GGA
80183201 ACTCTTTTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.31
Consensus pattern (28 bp):
GGAGCGCTTTATAACTGTGATAGAATCA
Found at i:80183207 original size:28 final size:28
Alignment explanation
Indices: 80183146--80183207 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
80183136 AGCTTTGGAG
* *
80183146 CTCTTTATAATTGTGATAGAATCAGGAG
1 CTCTTTATAACTGTGATAGAATCAGGAA
* *
80183174 CGCTTTATAGCTGTGATAGAATCAGGAA
1 CTCTTTATAACTGTGATAGAATCAGGAA
80183202 CTCTTT
1 CTCTTT
80183208 TAGAAAATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (28 bp):
CTCTTTATAACTGTGATAGAATCAGGAA
Found at i:80183347 original size:8 final size:8
Alignment explanation
Indices: 80183336--80183360 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
80183326 AAAATAGAAT
80183336 AATAATAA
1 AATAATAA
80183344 AATAATAA
1 AATAATAA
80183352 AATAATAA
1 AATAATAA
80183360 A
1 A
80183361 TAAAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAATAA
Found at i:80183355 original size:19 final size:20
Alignment explanation
Indices: 80183328--80183366 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
80183318 GTAGTCTTAA
*
80183328 AATAGAATAAT-AATAAAAT
1 AATAAAATAATAAATAAAAT
80183347 AATAAAATAATAAATAAAAT
1 AATAAAATAATAAATAAAAT
80183367 TTTTTAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (20 bp):
AATAAAATAATAAATAAAAT
Found at i:80188178 original size:143 final size:143
Alignment explanation
Indices: 80187970--80188264 Score: 581
Period size: 143 Copynumber: 2.1 Consensus size: 143
80187960 TGAGTTAAAT
*
80187970 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
80188035 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
80188100 GTGTGCATGAGTA
131 GTGTGCATGAGTA
80188113 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
80188178 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
80188243 GTGTGCATGAGTA
131 GTGTGCATGAGTA
80188256 TTCGGCCAT
1 TTCGGCCAT
80188265 ATGGGGTATA
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 151 1.00
ACGTcount: A:0.21, C:0.10, G:0.29, T:0.39
Consensus pattern (143 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGTGCATGAGTA
Found at i:80188854 original size:31 final size:29
Alignment explanation
Indices: 80188751--80188833 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
80188741 GTGACGAGAT
80188751 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
80188780 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
80188809 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
80188834 AAAATACGGC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:80188874 original size:60 final size:58
Alignment explanation
Indices: 80188747--80188883 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 58
80188737 TACGGTGACG
* * *
80188747 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
80188804 ATATATGGCACTAAGTGTGCATGCTGGAAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG--AAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
80188864 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
80188884 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
57 3 0.05
58 22 0.33
60 40 0.61
61 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:80194121 original size:46 final size:45
Alignment explanation
Indices: 80193970--80194108 Score: 138
Period size: 46 Copynumber: 3.0 Consensus size: 45
80193960 CGGGTGTTCG
* * *
80193970 CATCCATAAGTGAACTCAGACTCAACTCAACAAGCTCGG-ATGCC
1 CATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCC
* * *** * *
80194014 TAGTTACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCG
1 CA--TCCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCC
80194063 CATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCC
1 CATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCC
80194107 CA
1 CA
80194109 AATATCCTAG
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
44 6 0.08
46 33 0.45
47 30 0.41
49 4 0.05
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (45 bp):
CATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCC
Found at i:80196743 original size:27 final size:27
Alignment explanation
Indices: 80196705--80196761 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
80196695 TTTTATTATC
80196705 TAGCCTAAGCTAAGAATTCACAGAAAA
1 TAGCCTAAGCTAAGAATTCACAGAAAA
80196732 TAGCCTAAGCTAAGAATTCACAGAAAA
1 TAGCCTAAGCTAAGAATTCACAGAAAA
80196759 TAG
1 TAG
80196762 AATTGGGGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.47, C:0.18, G:0.16, T:0.19
Consensus pattern (27 bp):
TAGCCTAAGCTAAGAATTCACAGAAAA
Found at i:80201088 original size:138 final size:138
Alignment explanation
Indices: 80200861--80201136 Score: 534
Period size: 138 Copynumber: 2.0 Consensus size: 138
80200851 CACTTAATGG
80200861 ACACATCATTCACATAAGCAAGTTCCTGCACTTATTCATCACAAAACTCACAAAGAAATACATAG
1 ACACATCATTCACATAAGCAAGTTCCTGCACTTATTCATCACAAAACTCACAAAGAAATACATAG
* *
80200926 AGAGTCTCCCATTGAACACTTCGGATCTATCTTCGATACTTGGTGGTTTCAGCACATAGCTCCAC
66 AAAGTCTCCCATTGAACACTTCGGATCTATCTTCAATACTTGGTGGTTTCAGCACATAGCTCCAC
80200991 CCATCATA
131 CCATCATA
80200999 ACACATCATTCACATAAGCAAGTTCCTGCACTTATTCATCACAAAACTCACAAAGAAATACATAG
1 ACACATCATTCACATAAGCAAGTTCCTGCACTTATTCATCACAAAACTCACAAAGAAATACATAG
80201064 AAAGTCTCCCATTGAACACTTCGGATCTATCTTCAATACTTGGTGGTTTCAGCACATAGCTCCAC
66 AAAGTCTCCCATTGAACACTTCGGATCTATCTTCAATACTTGGTGGTTTCAGCACATAGCTCCAC
80201129 CCATCATA
131 CCATCATA
80201137 TAGTTCGGCT
Statistics
Matches: 136, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 136 1.00
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.27
Consensus pattern (138 bp):
ACACATCATTCACATAAGCAAGTTCCTGCACTTATTCATCACAAAACTCACAAAGAAATACATAG
AAAGTCTCCCATTGAACACTTCGGATCTATCTTCAATACTTGGTGGTTTCAGCACATAGCTCCAC
CCATCATA
Found at i:80205204 original size:13 final size:13
Alignment explanation
Indices: 80205182--80205217 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
80205172 GCTGGGCACA
*
80205182 GGCCCGTGTCCAT
1 GGCCCATGTCCAT
*
80205195 GGCCCTTGTCCAT
1 GGCCCATGTCCAT
80205208 GGCCCATGTC
1 GGCCCATGTC
80205218 TCTCACACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.08, C:0.39, G:0.28, T:0.25
Consensus pattern (13 bp):
GGCCCATGTCCAT
Found at i:80206524 original size:48 final size:48
Alignment explanation
Indices: 80206362--80206534 Score: 168
Period size: 48 Copynumber: 3.6 Consensus size: 48
80206352 TAAAATGTCA
* * *
80206362 ATGCCATGTCCTAGACATGGTCTTACACTGGC-CTACATATTGAGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACATATTAAGGCCG
* * * * * ** ** *
80206410 ATGCCATGTCCCAGGCATGGTTTTTCACTAGCTCTCATAACAATACCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTAAGGCCG
* * * *
80206458 ATGACATGTTCCAAACATGGTCTTACAGTGGCTCACATATTAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTAAGGCCG
*
80206506 ATTCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
80206535 AGCCCACAGA
Statistics
Matches: 92, Mismatches: 32, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
48 91 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTAAGGCCG
Found at i:80210596 original size:28 final size:28
Alignment explanation
Indices: 80210535--80210632 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
80210525 TCACAAATTG
** * *
80210535 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
80210564 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
80210592 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
80210620 GCACTAAGTGTGC
1 GCACTAAGTGTGC
80210633 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:80220131 original size:17 final size:18
Alignment explanation
Indices: 80220089--80220137 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
80220079 AGTTGAAAAG
80220089 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
80220108 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
80220125 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
80220138 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:80221024 original size:40 final size:39
Alignment explanation
Indices: 80220958--80221123 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
80220948 AAATTGAATG
* * *
80220958 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
80220997 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
80221036 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
80221076 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
80221116 ATATCCGG
1 ATATCCGG
80221124 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:80228127 original size:17 final size:18
Alignment explanation
Indices: 80228085--80228133 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
80228075 AGTTGAAAAG
80228085 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
80228104 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
80228121 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
80228134 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:80229019 original size:40 final size:40
Alignment explanation
Indices: 80228953--80229119 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
80228943 AAATTGAATG
* * *
80228953 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
80228992 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
80229032 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80229072 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80229112 ATATCCGG
1 ATATCCGG
80229120 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80236499 original size:29 final size:29
Alignment explanation
Indices: 80236457--80236519 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
80236447 CAAGTAGCCG
80236457 AAGCTAGTTAAATCGCACACTT-GTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
80236485 AAGCTAGATTAAATCGTACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
80236515 AAGCT
1 AAGCT
80236520 TCCGATCCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 7 0.22
29 14 0.44
30 11 0.34
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:80240286 original size:30 final size:30
Alignment explanation
Indices: 80240240--80240300 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80240230 TTCCCGAGCC
*
80240240 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * *
80240270 TAGGGGAAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
80240300 T
1 T
80240301 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:80241068 original size:68 final size:66
Alignment explanation
Indices: 80240996--80241167 Score: 172
Period size: 67 Copynumber: 2.6 Consensus size: 66
80240986 CATCATGTGT
* *
80240996 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCACATAG-GTGATACTATGTG-T-ACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCACAT-GCGTGATACCAAGTGATGACACC
80241058 ATGTAG
61 ATGTAG
** * * *
80241064 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAATGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATGCGTGATACCAAGTG-ATGACACCATGT
80241129 AG
65 AG
* * *
80241131 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATG
80241168 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
63 1 0.01
64 25 0.28
65 3 0.03
66 16 0.18
67 31 0.35
68 13 0.15
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.23
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATGCGTGATACCAAGTGATGACACCATGTA
G
Found at i:80245673 original size:48 final size:48
Alignment explanation
Indices: 80245611--80246015 Score: 693
Period size: 48 Copynumber: 8.4 Consensus size: 48
80245601 TATATATGTG
80245611 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
80245659 TGTGGTAAAGCCGAATGGCTAATGTGCAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
80245707 TGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
80245755 TGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
80245803 TGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
80245851 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
80245899 CGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
80245947 TGTGGTAAAGCTGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
80245995 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
80246016 GTGATTCGGC
Statistics
Matches: 339, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 339 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:80246252 original size:37 final size:37
Alignment explanation
Indices: 80246188--80246289 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
80246178 GGAAATATAT
80246188 TCCGGGTAAGACCC-ATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
80246224 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
80246261 TCCAGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
80246290 GGACTATTCG
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
36 14 0.23
37 48 0.77
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:80247636 original size:40 final size:40
Alignment explanation
Indices: 80247588--80247876 Score: 470
Period size: 40 Copynumber: 7.2 Consensus size: 40
80247578 AGTTATATAG
*
80247588 CCGGGCTAAGTCCCGAAGAGCATTCGTTCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* *
80247628 CTGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
**
80247668 TTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
80247708 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
80247748 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* * *
80247788 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* * * *
80247828 CCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
80247868 CCGGGCTAA
1 CCGGGCTAA
80247877 ATGTAATACC
Statistics
Matches: 238, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 238 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
Found at i:80249620 original size:47 final size:47
Alignment explanation
Indices: 80249548--80249774 Score: 294
Period size: 47 Copynumber: 4.7 Consensus size: 47
80249538 CCCTTCGGGA
* * * * * * *
80249548 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-C
* * *
80249596 C-TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80249642 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80249691 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80249738 CTTATCACATATATACACACCTTCACATTCATCACAT
1 CTTATCACATATAT--ACACTTTCACATTCATCACAT
80249775 AAAATCCTAA
Statistics
Matches: 162, Mismatches: 12, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
46 1 0.01
47 97 0.60
48 1 0.01
49 63 0.39
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:80249707 original size:96 final size:96
Alignment explanation
Indices: 80249545--80249774 Score: 333
Period size: 96 Copynumber: 2.4 Consensus size: 96
80249535 ATGCCCTTCG
* * * *
80249545 GGACTTATCACAT-T-TATACA-CTTCCACATCCATCACGTTGGCCACTCGGTCCTATCACATAT
1 GGACTTATCACATATATATACACCTT-CACATTCATCACATCGGCCACTAGGTCCTATCACATAT
* *
80249607 ATACACTTTCACATTCATCACATTGGCCATTC
65 ATACACTTTCACATTCATCACATCGGCCATTA
*
80249639 GGACTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGG-CCTTATCACATAT
1 GGACTTATCACATATATATACACCTTCACATTCATCACATCGGCCACTAGGTCC-TATCACATAT
80249703 ATACACTTTCACATTCATCACATCGGCCATTA
65 ATACACTTTCACATTCATCACATCGGCCATTA
* *
80249735 GGCCTTATCACATATATACACACCTTCACATTCATCACAT
1 GGACTTATCACATATATATACACCTTCACATTCATCACAT
80249775 AAAATCCTAA
Statistics
Matches: 123, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
94 13 0.11
95 3 0.02
96 104 0.85
97 3 0.02
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (96 bp):
GGACTTATCACATATATATACACCTTCACATTCATCACATCGGCCACTAGGTCCTATCACATATA
TACACTTTCACATTCATCACATCGGCCATTA
Found at i:80255916 original size:48 final size:48
Alignment explanation
Indices: 80255850--80256202 Score: 598
Period size: 48 Copynumber: 7.4 Consensus size: 48
80255840 TATATATGTG
*
80255850 TGTGGTAAAGCCGGATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
80255898 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGCGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
80255946 TGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
80255994 TGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
80256042 CGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
80256090 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
80256138 CGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
80256186 TGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATG
80256203 ACTAGTGATT
Statistics
Matches: 290, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 290 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:80256432 original size:37 final size:37
Alignment explanation
Indices: 80256382--80256481 Score: 164
Period size: 37 Copynumber: 2.7 Consensus size: 37
80256372 AATATATTCT
80256382 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
80256419 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
80256456 AGGTAAGACCCGATAACTACGTGTGG
1 GGGTAAGACCCGATGACTACGTGTGG
80256482 GGACTATTCG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:80258689 original size:45 final size:45
Alignment explanation
Indices: 80258633--80258719 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
80258623 GAACTATGTG
* *
80258633 ATCTGAACTCATTAAGTTATGGTCTGCGTTCATGATATATGTAAC
1 ATCTGAACTCATGAAGTTATGGTCTGAGTTCATGATATATGTAAC
* * * *
80258678 ATCTGAGCTCATGGAGTTGTGGTCTGAGTTCATGATGTATGT
1 ATCTGAACTCATGAAGTTATGGTCTGAGTTCATGATATATGT
80258720 GACACATGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATGAAGTTATGGTCTGAGTTCATGATATATGTAAC
Found at i:80263259 original size:43 final size:42
Alignment explanation
Indices: 80263116--80263260 Score: 132
Period size: 43 Copynumber: 3.4 Consensus size: 42
80263106 GGTGTGATTT
* *
80263116 CATGTAAGACCATGTTTGGGACATTGGCATCGATAT-GAGATTA
1 CATGTAAGACCATATCTGGGACATTGGCATCGATATAG-GA-TA
** * * * *
80263159 TGTGTAAGACCATGTCTAGGACATTGGCATC-ATATATGATT
1 CATGTAAGACCATATCTGGGACATTGGCATCGATATAGGATA
* * * **
80263200 CTTATAAGACCCTATCTGGGACAGAGGCATCGATATAGGATAA
1 CATGTAAGACCATATCTGGGACATTGGCATCGATATAGGAT-A
80263243 CATGTAAGACCATATCTG
1 CATGTAAGACCATATCTG
80263261 TGATATGGCA
Statistics
Matches: 80, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
41 24 0.30
42 14 0.17
43 42 0.52
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (42 bp):
CATGTAAGACCATATCTGGGACATTGGCATCGATATAGGATA
Found at i:80265407 original size:34 final size:34
Alignment explanation
Indices: 80265331--80265395 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
80265321 GATTGTATTT
*
80265331 CTGTCACTGTTACTGTAATGGGCTAAGGCCCACA
1 CTGTTACTGTTACTGTAATGGGCTAAGGCCCACA
* *
80265365 CT-TCTACTGTTACTGTATTGTGCTAAGGCCC
1 CTGT-TACTGTTACTGTAATGGGCTAAGGCCC
80265396 TAGCTGTTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 1 0.04
34 26 0.96
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (34 bp):
CTGTTACTGTTACTGTAATGGGCTAAGGCCCACA
Found at i:80277136 original size:29 final size:29
Alignment explanation
Indices: 80277072--80277174 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 29
80277062 AATTTAAGCT
* *** * *
80277072 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACCCAGTGCCATATATTTCCAGCA
* * *
80277101 CGTACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
**
80277130 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
**
80277159 CGCACACTTAGTGCCA
1 CGCACACCCAGTGCCA
80277175 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.24, C:0.36, G:0.17, T:0.23
Consensus pattern (29 bp):
CGCACACCCAGTGCCATATATTTCCAGCA
Found at i:80278075 original size:143 final size:143
Alignment explanation
Indices: 80277817--80278113 Score: 585
Period size: 143 Copynumber: 2.1 Consensus size: 143
80277807 AAATTCTATA
80277817 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
80277882 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
66 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
*
80277947 AGGAAGACAACAT
131 AGGAAAACAACAT
80277960 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
80278025 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
66 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
80278090 AGGAAAACAACAT
131 AGGAAAACAACAT
80278103 GCATGGCCGAA
1 GCATGGCCGAA
80278114 ATTTAACTCA
Statistics
Matches: 153, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 153 1.00
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.21
Consensus pattern (143 bp):
GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
AGGAAAACAACAT
Found at i:80284892 original size:29 final size:29
Alignment explanation
Indices: 80284828--80284930 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 29
80284818 AATTTAAGCC
* *** * *
80284828 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACCCAGTGCCATATATTTCCAGCA
* * *
80284857 CGTACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
**
80284886 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
**
80284915 CGCACACTTAGTGCCA
1 CGCACACCCAGTGCCA
80284931 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.24, C:0.36, G:0.17, T:0.23
Consensus pattern (29 bp):
CGCACACCCAGTGCCATATATTTCCAGCA
Found at i:80285677 original size:143 final size:143
Alignment explanation
Indices: 80285504--80285800 Score: 585
Period size: 143 Copynumber: 2.1 Consensus size: 143
80285494 AAATTCTATA
80285504 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
80285569 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
66 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
*
80285634 AGGAAGACAACAT
131 AGGAAAACAACAT
80285647 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
80285712 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
66 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
80285777 AGGAAAACAACAT
131 AGGAAAACAACAT
80285790 GCATGGCCGAA
1 GCATGGCCGAA
80285801 ATTTAACTCA
Statistics
Matches: 153, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 153 1.00
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.21
Consensus pattern (143 bp):
GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
AGGAAAACAACAT
Found at i:80287694 original size:42 final size:43
Alignment explanation
Indices: 80287600--80287738 Score: 156
Period size: 43 Copynumber: 3.2 Consensus size: 43
80287590 CAATGCCGAC
* * * *
80287600 GTCCCAGACATGGTCTTACATGTAAT-TCAGTATCAATGCCTTT
1 GTCCCAGACATGGTCTTACACGAAATCTCA-TATCGATGCCTAT
* *
80287643 GTCCCAGACAGGGTCTTACACGAAATCTGATAT-GATGCCTAT
1 GTCCCAGACATGGTCTTACACGAAATCTCATATCGATGCCTAT
* * * *
80287685 GTCCCAGACATTGTCTTACACGTAAATCTCAAATCGAGGCCTGT
1 GTCCCAGACATGGTCTTACACG-AAATCTCATATCGATGCCTAT
80287729 GTCCCAGACA
1 GTCCCAGACA
80287739 CGGATCTCAG
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
42 27 0.33
43 35 0.43
44 19 0.23
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGAAATCTCATATCGATGCCTAT
Found at i:80291281 original size:43 final size:43
Alignment explanation
Indices: 80291119--80291281 Score: 147
Period size: 43 Copynumber: 3.8 Consensus size: 43
80291109 AAGCAAGTAC
* * *
80291119 AATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-ATAT
1 AATGCCAATATCCCAGACATGGTCTTACATGTAATCTCAATAT
* * * * * *
80291160 CATGCCACTATCCCAAACAGGGTCTTACACG-AA-ATCAATTAAT
1 AATGCCAATATCCCAGACATGGTCTTACATGTAATCTCAA-T-AT
* * *
80291203 GATGGCAATGTCCCAGACATGGTCTTAC-TCGTAATCTCAATAT
1 AATGCCAATATCCCAGACATGGTCTTACAT-GTAATCTCAATAT
*
80291246 AATGCCAATTTCCCAGACATGGTCTTACATGTAATC
1 AATGCCAATATCCCAGACATGGTCTTACATGTAATC
80291282 ACATCTCGAT
Statistics
Matches: 94, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
40 1 0.01
41 7 0.07
42 20 0.21
43 58 0.62
44 4 0.04
45 4 0.04
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (43 bp):
AATGCCAATATCCCAGACATGGTCTTACATGTAATCTCAATAT
Found at i:80294578 original size:25 final size:25
Alignment explanation
Indices: 80294539--80294608 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
80294529 TAATGTACAT
*
80294539 GTATGCTCA-TACGAGCTGT-GAATCG
1 GTATGCTCACT-CGAGCTATAG-ATCG
*
80294564 GTATGCTCACTCGAGTTATAGATCG
1 GTATGCTCACTCGAGCTATAGATCG
* *
80294589 GTATGCTCTCACGAGCTATA
1 GTATGCTCACTCGAGCTATA
80294609 AATCAACATG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
25 36 0.95
26 2 0.05
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (25 bp):
GTATGCTCACTCGAGCTATAGATCG
Found at i:80295620 original size:48 final size:48
Alignment explanation
Indices: 80295568--80295666 Score: 189
Period size: 48 Copynumber: 2.1 Consensus size: 48
80295558 AAAGCTTAAA
80295568 TTTTTTTTTGTGTATTTTGTCATTATTTTCTAAATTACATAATTAGAC
1 TTTTTTTTTGTGTATTTTGTCATTATTTTCTAAATTACATAATTAGAC
*
80295616 TTTTTTTTTGTGTATTTTGTCATTATTTTCTAAATTACATAATTAGCC
1 TTTTTTTTTGTGTATTTTGTCATTATTTTCTAAATTACATAATTAGAC
80295664 TTT
1 TTT
80295667 AAAACCATTA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.23, C:0.09, G:0.08, T:0.60
Consensus pattern (48 bp):
TTTTTTTTTGTGTATTTTGTCATTATTTTCTAAATTACATAATTAGAC
Found at i:80297003 original size:43 final size:43
Alignment explanation
Indices: 80296926--80297086 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 43
80296916 GTTACCGAGA
* * * * *
80296926 TGTGATTACATGTAAGAACATTTCTGGAACATTGGTATTTTAT
1 TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTTTAT
* *
80296969 TGTGATTACGTGTAAGACCATGTCTGGGATATTGGCATCGTTA-
1 TGTGATTACATGTAAGACCATGTCTGGGATATTGGCAT-TTTAT
* * * * * **
80297012 -GTCGATTACGTGTAAGACCCTGTCTAGGATAGTGACA-TCGAT
1 TGT-GATTACATGTAAGACCATGTCTGGGATATTGGCATTTTAT
* *
80297054 ATGTGATAACATGTAAGACCATATCTGGGATAT
1 -TGTGATTACATGTAAGACCATGTCTGGGATAT
80297087 GGTATTGTAA
Statistics
Matches: 93, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 85 0.91
44 5 0.05
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTTTAT
Found at i:80299984 original size:16 final size:16
Alignment explanation
Indices: 80299963--80299997 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
80299953 AGTAAATCCT
*
80299963 GAAATGCCGGAAAGCC
1 GAAATGCCGAAAAGCC
*
80299979 GAAATGCTGAAAAGCC
1 GAAATGCCGAAAAGCC
80299995 GAA
1 GAA
80299998 TGTTTAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.20, G:0.29, T:0.09
Consensus pattern (16 bp):
GAAATGCCGAAAAGCC
Found at i:80300295 original size:28 final size:27
Alignment explanation
Indices: 80300211--80300310 Score: 110
Period size: 28 Copynumber: 3.6 Consensus size: 27
80300201 AGTACATTAC
**
80300211 TATGAATGTGATTGGGCCTGGCGTGCCA
1 TATGAATGTGATTGGGCCTGATG-GCCA
* *
80300239 TACGAAAGTGATTGGGCCTGATGGACCA
1 TATGAATGTGATTGGGCCTGATGG-CCA
*
80300267 TATGAATGTGATTGGGCCCGATTGGCCA
1 TATGAATGTGATTGGGCCTGA-TGGCCA
* *
80300295 TATGAACGAGATTGGG
1 TATGAATGTGATTGGG
80300311 TCTAAAGGGG
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
27 1 0.02
28 57 0.93
29 3 0.05
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (27 bp):
TATGAATGTGATTGGGCCTGATGGCCA
Found at i:80302490 original size:93 final size:93
Alignment explanation
Indices: 80302378--80302549 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80302368 GCCCATAAGT
* *
80302378 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80302443 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
80302471 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80302536 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
80302550 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:80302545 original size:46 final size:46
Alignment explanation
Indices: 80302370--80302545 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
80302360 TGTAACCCGC
* * *
80302370 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
80302416 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
80302466 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
80302509 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80302546 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:80304966 original size:29 final size:29
Alignment explanation
Indices: 80304927--80305014 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
80304917 CAAAGATAAC
*
80304927 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
80304956 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
80304985 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
80305015 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:80304985 original size:15 final size:15
Alignment explanation
Indices: 80304927--80305005 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
80304917 CAAAGATAAC
*
80304927 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
80304941 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
80304956 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
80304970 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
80304985 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
80305000 AAGAAA
1 AAGAAA
80305006 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:80305014 original size:15 final size:15
Alignment explanation
Indices: 80304938--80305014 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
80304928 AGAAAACCGA
80304938 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
80304953 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
80304967 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
80304981 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
80304997 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
80305012 ATA
1 ATA
80305015 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:80307903 original size:46 final size:46
Alignment explanation
Indices: 80307836--80307964 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
80307826 TGTAACCCGC
* * *
80307836 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
80307882 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
80307928 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80307965 TGCCCAAATA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:80309684 original size:17 final size:18
Alignment explanation
Indices: 80309651--80309684 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80309641 TTCAAAGAAG
80309651 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
80309669 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
80309685 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:80314773 original size:28 final size:28
Alignment explanation
Indices: 80314739--80314838 Score: 119
Period size: 28 Copynumber: 3.6 Consensus size: 28
80314729 GCCCTTTAGA
* *
80314739 CCCAATCTCATTCATATGGCCCATCGGG
1 CCCAATCACATTCATATGGCCCATCAGG
** *
80314767 CTTAATCACATTCAAATGGCCCATCAGG
1 CCCAATCACATTCATATGGCCCATCAGG
* * * *
80314795 CCCAATCACTTTCATATGGCTCGTCTGG
1 CCCAATCACATTCATATGGCCCATCAGG
80314823 CCCAATCACATTCATA
1 CCCAATCACATTCATA
80314839 GTCATGCAAT
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.27
Consensus pattern (28 bp):
CCCAATCACATTCATATGGCCCATCAGG
Found at i:80317022 original size:16 final size:16
Alignment explanation
Indices: 80317002--80317058 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
80316992 CGGCAAATCC
80317002 CGAAAAGCCGAAATG-
1 CGAAAAGCCGAAATGT
*
80317017 CTGAAAAGCCAAAATGT
1 C-GAAAAGCCGAAATGT
*
80317034 CGAAAAGCTGAAATGT
1 CGAAAAGCCGAAATGT
*
80317050 CAAAAAGCC
1 CGAAAAGCC
80317059 AAAAGTTTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
15 1 0.03
16 33 0.94
17 1 0.03
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.12
Consensus pattern (16 bp):
CGAAAAGCCGAAATGT
Found at i:80317047 original size:32 final size:32
Alignment explanation
Indices: 80317002--80317062 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
80316992 CGGCAAATCC
*
80317002 CGAAAAGCCGAAATG-CTGAAAAGCCAAAATGT
1 CGAAAAGCCGAAATGTC-AAAAAGCCAAAATGT
*
80317034 CGAAAAGCTGAAATGTCAAAAAGCCAAAA
1 CGAAAAGCCGAAATGTCAAAAAGCCAAAA
80317063 GTTTGCCTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 25 0.96
33 1 0.04
ACGTcount: A:0.51, C:0.18, G:0.20, T:0.11
Consensus pattern (32 bp):
CGAAAAGCCGAAATGTCAAAAAGCCAAAATGT
Found at i:80317314 original size:28 final size:28
Alignment explanation
Indices: 80317278--80317389 Score: 118
Period size: 28 Copynumber: 4.0 Consensus size: 28
80317268 CATGACTGTA
* *
80317278 AATGAGATTTGTGCCTAGT-GGCCATATG
1 AATGAGA-TTGGGCCTAATGGGCCATATG
* * *
80317306 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGAGA-TTGGGCCTAATGGGCCATATG
* *
80317335 AATGTGAATGGGCCTAATGGGCCATATG
1 AATGAGATTGGGCCTAATGGGCCATATG
* *
80317363 AAAGAGATTGGGCCTAGTGGGCCATAT
1 AATGAGATTGGGCCTAATGGGCCATAT
80317390 ATATATAGGT
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 57 0.80
29 14 0.20
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (28 bp):
AATGAGATTGGGCCTAATGGGCCATATG
Found at i:80319202 original size:40 final size:40
Alignment explanation
Indices: 80319124--80319300 Score: 216
Period size: 40 Copynumber: 4.4 Consensus size: 40
80319114 CCCCAAGTAT
* * *
80319124 CTTCGCGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
80319163 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
80319203 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
80319243 CTTCGGGACTTAGCCTGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
80319286 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
80319301 TAACATTCAA
Statistics
Matches: 121, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
39 11 0.09
40 84 0.69
41 1 0.01
43 25 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:80329976 original size:40 final size:40
Alignment explanation
Indices: 80329876--80330041 Score: 183
Period size: 40 Copynumber: 4.2 Consensus size: 40
80329866 ATGATACCTA
* *
80329876 GGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCG
* *
80329916 GGCTAAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCG
1 GGCT-AAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCG
* *** *
80329957 GGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCG
* * * *
80329997 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCG
80330036 GGCTAA
1 GGCTAA
80330042 ATTCTGAAGA
Statistics
Matches: 104, Mismatches: 20, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
39 5 0.05
40 64 0.62
41 33 0.32
42 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCG
Found at i:80338045 original size:40 final size:40
Alignment explanation
Indices: 80337985--80338151 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
80337975 TGAATGATAC
* *
80337985 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
80338025 CCGGACTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
80338065 CCGGGCTAAGA-CCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
80338104 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
80338144 CC-GGCTAA
1 CCGGGCTAA
80338152 ATTCTGAAGA
Statistics
Matches: 102, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
38 1 0.01
39 35 0.34
40 64 0.63
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:80338117 original size:79 final size:80
Alignment explanation
Indices: 80337985--80338151 Score: 196
Period size: 79 Copynumber: 2.1 Consensus size: 80
80337975 TGAATGATAC
* * ** *
80337985 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGACTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGTACCGAAGGCATTTATGCAAGTGACCAAATCCGGACTAAGACCCGAAGGCAATT-
*
80338049 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * **
80338065 CCGGGCTAAG-ACCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGTACCGAAGGCATTTATGCAAGTGACCAAATCCGGACTAAGACCCGAAGGCAATTG
**
80338129 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
80338144 CC-GGCTAA
1 CCGGGCTAA
80338152 ATTCTGAAGA
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
78 6 0.08
79 55 0.74
80 13 0.18
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTACCGAAGGCATTTATGCAAGTGACCAAATCCGGACTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:80341634 original size:29 final size:29
Alignment explanation
Indices: 80341592--80341648 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
80341582 GGACATTTGC
80341592 ATTGTATTGTGATTACATGTAAGACCATG
1 ATTGTATTGTGATTACATGTAAGACCATG
* *
80341621 ATTGTATTGTGATTACGTGTGAGACCAT
1 ATTGTATTGTGATTACATGTAAGACCAT
80341649 ATTTGGGACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.39
Consensus pattern (29 bp):
ATTGTATTGTGATTACATGTAAGACCATG
Found at i:80341701 original size:43 final size:43
Alignment explanation
Indices: 80341628--80341738 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 43
80341618 ATGATTGTAT
* * * * * *
80341628 TGTGATTACGTGTGAGACCATATTTGGGACATTGGCATCGTTA
1 TGTGATTACGTGTAAGACCATATCTAGGACAGTGACATCGATA
* *
80341671 T-TCGATTACGTGTAAGACCTTGTCTAGGACAGTGACATCGATA
1 TGT-GATTACGTGTAAGACCATATCTAGGACAGTGACATCGATA
* *
80341714 TGTGATAACATGTAAGACCATATCT
1 TGTGATTACGTGTAAGACCATATCT
80341739 GTGATATGGC
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
42 1 0.02
43 52 0.96
44 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.32
Consensus pattern (43 bp):
TGTGATTACGTGTAAGACCATATCTAGGACAGTGACATCGATA
Found at i:80346669 original size:2 final size:2
Alignment explanation
Indices: 80346662--80346691 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
80346652 ATCGGGTATG
80346662 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80346692 AGTATGCCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80347174 original size:24 final size:24
Alignment explanation
Indices: 80347142--80347324 Score: 276
Period size: 24 Copynumber: 7.6 Consensus size: 24
80347132 CATCTCAAAT
*
80347142 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
80347166 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
80347190 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
80347214 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
80347238 GCACTAAGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
80347262 GCACTAAGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* * *
80347286 GCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
80347310 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
80347325 ACATAATAAG
Statistics
Matches: 152, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 152 1.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:80347337 original size:48 final size:48
Alignment explanation
Indices: 80347142--80347346 Score: 216
Period size: 48 Copynumber: 4.3 Consensus size: 48
80347132 CATCTCAAAT
* * *
80347142 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGA-TTCACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACAT-AATATA
** * *
80347190 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATA
* * * ** *
80347238 GCACTAAGTGTGCGATTTACTATGGCACTAAGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATA
* ** * *
80347286 GCACTACGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ACATAATATA
80347334 GCACTATGTGTGC
1 GCACTATGTGTGC
80347347 CACATTCGGT
Statistics
Matches: 142, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
48 135 0.95
49 7 0.05
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (48 bp):
GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATA
Found at i:80347338 original size:72 final size:72
Alignment explanation
Indices: 80347142--80347346 Score: 236
Period size: 72 Copynumber: 2.8 Consensus size: 72
80347132 CATCTCAAAT
* *
80347142 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACT-AT-GGCACTATGTGTGCGA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA-ACA-TAATAGGCACTATGTGTGCGA
*
80347205 TTCACTATG
64 TTCACTATA
* ** * *
80347214 GCACTATGTGTGCGATTTACTATGGCACTAAGTGTGCG-ATTTACTATGGCACTAAGTGTGCGAT
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-GGCACTATGTGTGCGAT
*
80347278 TTACTATA
65 TCACTATA
* * * * *
80347286 GCACTACGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATAAGCACTATGTGTGC
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAGGCACTATGTGTGC
80347347 CACATTCGGT
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
69 1 0.01
70 1 0.01
72 103 0.94
73 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (72 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAGGCACTATGTGTGCGATT
CACTATA
Found at i:80350839 original size:40 final size:39
Alignment explanation
Indices: 80350671--80350841 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
80350661 AGAAATTGAA
* *
80350671 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
80350711 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
80350751 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
80350791 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
80350831 TGATATCCGGG
1 TGATATCCGGG
80350842 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:80359968 original size:39 final size:39
Alignment explanation
Indices: 80359917--80360023 Score: 139
Period size: 39 Copynumber: 2.7 Consensus size: 39
80359907 GAAATTATAA
*
80359917 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGC-TAC-AT
1 CCGGGCTAAGACCCGAAGGCAATTGTGC-AGT-CATACTAT
*
80359956 CCGGGCTAAGACCCGAAGGC-ATTCGTGCAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCAGTCATACTAT
*
80359995 CCGGGCTAAGACCCGAAGGCATTTGTGCA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCA
80360024 AATCGTGATA
Statistics
Matches: 61, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
37 1 0.02
38 8 0.13
39 50 0.82
40 2 0.03
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.21
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAGTCATACTAT
Found at i:80368125 original size:40 final size:39
Alignment explanation
Indices: 80367961--80368143 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 39
80367951 AAATTGAATG
* *
80367961 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
80368000 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * *
80368040 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
80368080 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
80368119 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
80368144 CTTGGTGCGG
Statistics
Matches: 114, Mismatches: 24, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 15 0.13
40 93 0.82
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:80371163 original size:19 final size:17
Alignment explanation
Indices: 80371141--80371211 Score: 72
Period size: 18 Copynumber: 4.0 Consensus size: 17
80371131 CTTAAAATTT
80371141 AAAAATTTTAAAAAATA
1 AAAAATTTTAAAAAATA
*
80371158 CAAAAATATTTTAAAAATA
1 -AAAAAT-TTTAAAAAATA
*
80371177 AAAAATTATTAAAAATATT
1 AAAAATT-TTAAAAA-ATA
*
80371196 AAAAA-TATAAAAAATA
1 AAAAATTTTAAAAAATA
80371212 TTTTTAAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
16 2 0.04
17 7 0.16
18 19 0.42
19 17 0.38
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAAATTTTAAAAAATA
Found at i:80371168 original size:28 final size:27
Alignment explanation
Indices: 80371137--80371212 Score: 77
Period size: 28 Copynumber: 2.7 Consensus size: 27
80371127 TTTTCTTAAA
80371137 ATTTAAAAATTTTAAAAAATA-CAAAAAT
1 ATTTAAAAA--TTAAAAAATATCAAAAAT
*
80371165 ATTTTAAAAA-TAAAAAATTATTAAAAAT
1 A-TTTAAAAATTAAAAAA-TATCAAAAAT
80371193 A-TTAAAAATATAAAAAATAT
1 ATTTAAAAAT-TAAAAAATAT
80371213 TTTTAAAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
26 14 0.33
27 5 0.12
28 15 0.36
29 8 0.19
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (27 bp):
ATTTAAAAATTAAAAAATATCAAAAAT
Found at i:80371178 original size:26 final size:27
Alignment explanation
Indices: 80371134--80371212 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 27
80371124 TAATTTTCTT
*
80371134 AAAAT-TTAAAAATTTTAAAAAATA-CA
1 AAAATATTAAAAA-TATAAAAAATATCA
* *
80371160 AAAATATTTTAAAAATA-AAAAATTATTA
1 AAAATA--TTAAAAATATAAAAAATATCA
80371188 AAAATATTAAAAATATAAAAAATAT
1 AAAATATTAAAAATATAAAAAATAT
80371213 TTTTAAAATT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
26 14 0.32
27 15 0.34
28 8 0.18
29 7 0.16
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (27 bp):
AAAATATTAAAAATATAAAAAATATCA
Found at i:80374317 original size:46 final size:47
Alignment explanation
Indices: 80374086--80374405 Score: 248
Period size: 46 Copynumber: 6.8 Consensus size: 47
80374076 GGGTGTAATA
80374086 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCCATCAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCAAG
* ** * * *
80374133 TCGATGCCATGTCCCAGACATGGTCTTACACTAACTATTGAAATC-GAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC--TT-ACATCTCAAG
* * * * *
80374182 CCGACGCCATGTCCCAGATATGGTCTTACACTAGCTCTCATATCTC-TG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCTCAAG
* * * *
80374230 TTTCGATGCCATATCTCAGACATGGTCTTACACTGAC--ACATCTCATAG
1 --CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCA-AG
*
80374278 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTC-AAG
* * *
80374324 CTGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCT-CATCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCAA-G
* * *
80374370 CTGTTGTCATGTCCCAGACATGGTCTTACACTGGCT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
80374406 CTCATAATAT
Statistics
Matches: 220, Mismatches: 35, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
44 12 0.05
45 13 0.06
46 62 0.28
47 48 0.22
48 20 0.09
49 33 0.15
50 29 0.13
51 1 0.00
52 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAG
Found at i:80383532 original size:16 final size:16
Alignment explanation
Indices: 80383519--80383550 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
80383509 TGACAAAAGT
80383519 AAAA-AAAGTAAAAAA
1 AAAATAAAGTAAAAAA
80383534 AAAATAAAGTAAAAAA
1 AAAATAAAGTAAAAAA
80383550 A
1 A
80383551 GTAACAGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.09
Consensus pattern (16 bp):
AAAATAAAGTAAAAAA
Found at i:80383534 original size:10 final size:9
Alignment explanation
Indices: 80383513--80383554 Score: 61
Period size: 9 Copynumber: 4.9 Consensus size: 9
80383503 ACAATATGAC
80383513 AAAAGTAAA
1 AAAAGTAAA
80383522 AAAAGTAAA
1 AAAAGTAAA
80383531 AAAA--AAA
1 AAAAGTAAA
*
80383538 TAAAGTAAA
1 AAAAGTAAA
80383547 AAAAGTAA
1 AAAAGTAA
80383555 CAGGATGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 6 0.21
9 23 0.79
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.12
Consensus pattern (9 bp):
AAAAGTAAA
Found at i:80384131 original size:25 final size:25
Alignment explanation
Indices: 80384103--80384154 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
80384093 GATTTATCTG
80384103 TCGTTCCTCATTGATTAGTTTGTTT
1 TCGTTCCTCATTGATTAGTTTGTTT
80384128 TCGTTCCTCATTGATTAGTTTGTTT
1 TCGTTCCTCATTGATTAGTTTGTTT
80384153 TC
1 TC
80384155 TTTGCATCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.12, C:0.17, G:0.15, T:0.56
Consensus pattern (25 bp):
TCGTTCCTCATTGATTAGTTTGTTT
Found at i:80397300 original size:2 final size:2
Alignment explanation
Indices: 80397293--80397323 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
80397283 TTTATAGGAG
80397293 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80397324 AAAGTGTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80399489 original size:42 final size:41
Alignment explanation
Indices: 80399437--80399565 Score: 213
Period size: 42 Copynumber: 3.1 Consensus size: 41
80399427 TTAAGCCCGG
*
80399437 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCAC-AAGCCTGCGGGATTTAACCCGGATAT
*
80399479 ATATATTACCAGCACGAAGCCTGCGGGACTTAACCCGGATAT
1 ATATATTACCAGCAC-AAGCCTGCGGGATTTAACCCGGATAT
80399521 ATATATTACCAGCACAGAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACA-AGCCTGCGGGATTTAACCCGGATAT
80399563 ATA
1 ATA
80399566 ATATATCTAG
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
41 1 0.01
42 81 0.99
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (41 bp):
ATATATTACCAGCACAAGCCTGCGGGATTTAACCCGGATAT
Found at i:80407305 original size:42 final size:41
Alignment explanation
Indices: 80407216--80407372 Score: 171
Period size: 42 Copynumber: 3.9 Consensus size: 41
80407206 GTCACTAGCT
* * *
80407216 CGAAGCCTGCGGAACTTTAAGCCCGG--ATATA-GTACCCGCA
1 CGAAGCCTGCGGGA-TTTAA-CCCGGATATATATATACCAGCA
*
80407256 CTAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGCA
1 CGAAGCCTGCGGGATTTAACCCGGATATATATA-TACCAGCA
* *
80407298 CGAAGCCTGCGGGATTTAACCC--AGATATATATACCAGTA
1 CGAAGCCTGCGGGATTTAACCCGGATATATATATACCAGCA
* *
80407337 CGGAGCCTGCGAGATTTAACCCGGATATATAATATA
1 CGAAGCCTGCGGGATTTAACCCGGATATAT-ATATA
80407373 TCGAGTGCTA
Statistics
Matches: 100, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
38 5 0.05
39 32 0.32
40 25 0.25
41 5 0.05
42 33 0.33
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (41 bp):
CGAAGCCTGCGGGATTTAACCCGGATATATATATACCAGCA
Found at i:80407344 original size:39 final size:40
Alignment explanation
Indices: 80407216--80407367 Score: 157
Period size: 39 Copynumber: 3.8 Consensus size: 40
80407206 GTCACTAGCT
* * * *
80407216 CGAAGCCTGCGGAACTTTAAGCCC-G-GATATAGTACCCGCA
1 CGAAGCCTGCGGGA-TTTAA-CCCAGATATATATTACCAGCA
* *
80407256 CTAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGCA
1 CGAAGCCTGCGGGATTTAACCC--AGATATATATTACCAGCA
*
80407298 CGAAGCCTGCGGGATTTAACCCAGATATATA-TACCAGTA
1 CGAAGCCTGCGGGATTTAACCCAGATATATATTACCAGCA
* * *
80407337 CGGAGCCTGCGAGATTTAACCCGGATATATA
1 CGAAGCCTGCGGGATTTAACCCAGATATATA
80407368 ATATATCGAG
Statistics
Matches: 96, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
38 3 0.03
39 40 0.42
40 20 0.21
42 33 0.34
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (40 bp):
CGAAGCCTGCGGGATTTAACCCAGATATATATTACCAGCA
Done.