Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 267 of 770
Found at i:80415108 original size:42 final size:42
Alignment explanation
Indices: 80415062--80415174 Score: 172
Period size: 42 Copynumber: 2.7 Consensus size: 42
80415052 TACCCGCACT
*
80415062 AAGCCTGTGGGATTTAACCCGGATATATATATTACCAGTACG
1 AAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACG
* * *
80415104 AAGCCTACGGGATTGAACCCAGATATATATATTACCAGTACG
1 AAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACG
* *
80415146 GAGCCTGCGAGATTTAACCCGGATATATA
1 AAGCCTGCGGGATTTAACCCGGATATATA
80415175 ATATATCGAG
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (42 bp):
AAGCCTGCGGGATTTAACCCGGATATATATATTACCAGTACG
Found at i:80428801 original size:14 final size:14
Alignment explanation
Indices: 80428784--80428810 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80428774 ATTTAACTAA
80428784 TTATATGATTATAT
1 TTATATGATTATAT
80428798 TTATATGATTATA
1 TTATATGATTATA
80428811 ATTTGAGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (14 bp):
TTATATGATTATAT
Found at i:80431959 original size:29 final size:28
Alignment explanation
Indices: 80431927--80432001 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 28
80431917 GTGACGAGAT
* *
80431927 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* *
80431956 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
80431985 TGGCACTATGTGTGCGA
1 TGGCACTA-GTGTGCGA
80432002 ACTCTACACA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 1 0.03
29 39 0.98
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (28 bp):
TGGCACTAGTGTGCGAGCTTGGAATATA
Found at i:80435025 original size:13 final size:13
Alignment explanation
Indices: 80435009--80435035 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80434999 CTTGGACACA
80435009 TGCCCGTGTCCTT
1 TGCCCGTGTCCTT
80435022 TGCCCGTGTCCTT
1 TGCCCGTGTCCTT
80435035 T
1 T
80435036 CACACTGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.37, G:0.22, T:0.41
Consensus pattern (13 bp):
TGCCCGTGTCCTT
Found at i:80438242 original size:48 final size:48
Alignment explanation
Indices: 80438190--80438906 Score: 1087
Period size: 48 Copynumber: 15.0 Consensus size: 48
80438180 AGATAAATAT
* * * * *
80438190 ATATATGTGTGATAAGTATATGTGGCAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
80438238 ATATATGTGTGATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80438286 ATATATATAAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
80438334 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
80438382 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80438430 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGT-AA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
80438477 ATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80438525 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
80438573 ATATATGTGTGATATGTGTATGTGGTAAAGCTGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80438621 ATATATAT-AGATATGCATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
80438668 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80438716 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80438764 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80438812 ATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
80438860 ATATGTATAAGATAAGAATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
80438907 GTGTTGTAAC
Statistics
Matches: 610, Mismatches: 57, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
47 85 0.14
48 525 0.86
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:80438571 original size:191 final size:192
Alignment explanation
Indices: 80438190--80438906 Score: 1159
Period size: 191 Copynumber: 3.7 Consensus size: 192
80438180 AGATAAATAT
* * * * *
80438190 ATATATGTGTGATAAGTATATGTGGCAAAGCCGAATGGCGAATGTGAAATATATGTGTGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
* *
80438255 GTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGA
* * *
80438320 AAGGCTAATGTGAAATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
131 ATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * * *
80438382 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
*
80438447 ATATGTGGTAAAGCCGAATGGCTAATGT-AAATATATATAAGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGA
* * * *
80438511 ATGGCTAATGTGAAATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
131 ATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
80438573 ATATATGTGTGATATGTGTATGTGGTAAAGCTGAATGGCTAATGTGAAATATATAT-AGATATGC
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
* *
80438637 ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGA
80438702 ATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
131 ATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
80438764 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
* * * *
80438829 ATATGTCGTAAAGCCGAATGGCGAATGTGAAATATGTATAAGATAAGAATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGA
80438894 ATGGCTAATGTGA
131 ATGGCTAATGTGA
80438907 GTGTTGTAAC
Statistics
Matches: 487, Mismatches: 36, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
190 33 0.07
191 287 0.59
192 167 0.34
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (192 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:80438991 original size:37 final size:37
Alignment explanation
Indices: 80438941--80439037 Score: 185
Period size: 37 Copynumber: 2.6 Consensus size: 37
80438931 ACATGAAACT
*
80438941 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCAATGACTACGTG
80438978 TGGAGATTATGTCCGGGTAAGACCCAATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCAATGACTACGTG
80439015 TGGAGATTATGTCCGGGTAAGAC
1 TGGAGATTATGTCCGGGTAAGAC
80439038 TTCGTAATAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.25
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCAATGACTACGTG
Found at i:80445346 original size:27 final size:27
Alignment explanation
Indices: 80445302--80445376 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 27
80445292 TACTGAAATG
** *
80445302 CCCTCGACTTGTAAAATTACCAAAGTA
1 CCCTCGACTTACAGAATTACCAAAGTA
* * * ***
80445329 CTCTCGATTTACAGAATTACTATTTTA
1 CCCTCGACTTACAGAATTACCAAAGTA
80445356 CCCTCGACTTACAGAATTACC
1 CCCTCGACTTACAGAATTACC
80445377 GTTTTACCCT
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.32
Consensus pattern (27 bp):
CCCTCGACTTACAGAATTACCAAAGTA
Found at i:80445374 original size:54 final size:54
Alignment explanation
Indices: 80445302--80445512 Score: 149
Period size: 54 Copynumber: 3.9 Consensus size: 54
80445292 TACTGAAATG
** * * *
80445302 CCCTCGACTTGTAAAATTACCAAAGTACTCTCGATTTACAGAATTACTATTTTA
1 CCCTCGACTTACAGAATTACCAAAGTACCCTCGATTTACAAAATTACTATTTTA
**** ** *
80445356 CCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTGTAAAATTACTGTTTTA
1 CCCTCGACTTACAGAATTACCAAAGTACCCTCGATTTACAAAATTACTATTTTA
* * ***** *
80445410 CCCTTGATTTACAGAATTACTGGTTTACCCTC-AGTTTACAAAATTA-TCGTTTTA
1 CCCTCGACTTACAGAATTACCAAAGTACCCTCGA-TTTACAAAATTACT-ATTTTA
* * * * *
80445464 CCCTCGATTTACAAAATTACCAAAATACCCAT-GGTTTGCAAAATTACTA
1 CCCTCGACTTACAGAATTACCAAAGTACCC-TCGATTTACAAAATTACTA
80445513 AAATACCCCT
Statistics
Matches: 124, Mismatches: 28, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
53 2 0.02
54 120 0.97
55 2 0.02
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (54 bp):
CCCTCGACTTACAGAATTACCAAAGTACCCTCGATTTACAAAATTACTATTTTA
Found at i:80445381 original size:27 final size:27
Alignment explanation
Indices: 80445331--80445484 Score: 175
Period size: 27 Copynumber: 5.7 Consensus size: 27
80445321 CCAAAGTACT
* **
80445331 CTCGATTTACAGAATTACTATTTTACC
1 CTCGATTTACAAAATTACCGTTTTACC
* *
80445358 CTCGACTTACAGAATTACCGTTTTACC
1 CTCGATTTACAAAATTACCGTTTTACC
** *
80445385 CTCGATTTGTAAAATTACTGTTTTACC
1 CTCGATTTACAAAATTACCGTTTTACC
* * * *
80445412 CTTGATTTACAGAATTACTGGTTTACC
1 CTCGATTTACAAAATTACCGTTTTACC
*
80445439 CTC-AGTTTACAAAATTATCGTTTTACC
1 CTCGA-TTTACAAAATTACCGTTTTACC
80445466 CTCGATTTACAAAATTACC
1 CTCGATTTACAAAATTACC
80445485 AAAATACCCA
Statistics
Matches: 106, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 104 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.39
Consensus pattern (27 bp):
CTCGATTTACAAAATTACCGTTTTACC
Found at i:80445424 original size:81 final size:81
Alignment explanation
Indices: 80445334--80445483 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 81
80445324 AAGTACTCTC
* * **
80445334 GATTTACAGAATTACTATTTTACCCTC-GACTTACAGAATTACCGTTTTACCCTCGATTTGTAAA
1 GATTTACAGAATTACTAGTTTACCCTCAG-CTTACAAAATTACCGTTTTACCCTCGATTTACAAA
80445398 ATTACTGTTTTACCCTT
65 ATTACTGTTTTACCCTT
* * *
80445415 GATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCGTTTTACCCTCGATTTACAAAA
1 GATTTACAGAATTACTAGTTTACCCTCAGCTTACAAAATTACCGTTTTACCCTCGATTTACAAAA
80445480 TTAC
66 TTAC
80445484 CAAAATACCC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
81 60 0.98
82 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.39
Consensus pattern (81 bp):
GATTTACAGAATTACTAGTTTACCCTCAGCTTACAAAATTACCGTTTTACCCTCGATTTACAAAA
TTACTGTTTTACCCTT
Found at i:80445492 original size:27 final size:27
Alignment explanation
Indices: 80445469--80445520 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
80445459 TTTTACCCTC
80445469 GATTTACAAAATTACCAAAATACCCAT
1 GATTTACAAAATTACCAAAATACCCAT
* * *
80445496 GGTTTGCAAAATTACTAAAATACCC
1 GATTTACAAAATTACCAAAATACCC
80445521 CTGTAGGGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (27 bp):
GATTTACAAAATTACCAAAATACCCAT
Found at i:80445493 original size:81 final size:81
Alignment explanation
Indices: 80445314--80445512 Score: 211
Period size: 81 Copynumber: 2.5 Consensus size: 81
80445304 CTCGACTTGT
* * * * *
80445314 AAAATTACCAAAGTACTCTCGATTTACAGAATTACTATTTTACCCTCGACTTACAGAATTACCGT
1 AAAATTACCAAAATACCCTTGATTTACAGAATTACTAGTTTACCCTCGACTTACAAAATTACCGT
**
80445379 TTTACCCTCGATTTGT
66 TTTACCCTCGATTTAC
***** * * *
80445395 AAAATTACTGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTC-AGTTTACAAAATTATCG
1 AAAATTACCAAAATACCCTTGATTTACAGAATTACTAGTTTACCCTCGA-CTTACAAAATTACCG
80445459 TTTTACCCTCGATTTAC
65 TTTTACCCTCGATTTAC
* * * *
80445476 AAAATTACCAAAATACCCATGGTTTGCAAAATTACTA
1 AAAATTACCAAAATACCCTTGATTTACAGAATTACTA
80445513 AAATACCCCT
Statistics
Matches: 93, Mismatches: 24, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
80 1 0.01
81 92 0.99
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.36
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTGATTTACAGAATTACTAGTTTACCCTCGACTTACAAAATTACCGT
TTTACCCTCGATTTAC
Found at i:80445533 original size:27 final size:27
Alignment explanation
Indices: 80445476--80445566 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 27
80445466 CTCGATTTAC
* ** *
80445476 AAAATTACCAAAATACCCATGGT-TTGC
1 AAAATTACCAAAATACCCCT-GTAGGGT
*
80445503 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACCAAAATACCCCTGTAGGGT
*
80445530 AAAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCAAAATACCCCTGTAGGGT
*
80445557 AGAATTACCA
1 AAAATTACCA
80445567 TTTTGCCCCT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.04
27 52 0.96
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.24
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGTAGGGT
Found at i:80447027 original size:40 final size:39
Alignment explanation
Indices: 80446982--80447189 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
80446972 CGGAATACAA
*
80446982 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
80447022 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
80447062 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
80447102 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
80447142 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
80447182 CCGGATAT
1 CCGGATAT
80447190 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:80447122 original size:80 final size:81
Alignment explanation
Indices: 80446982--80447187 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
80446972 CGGAATACAA
* * *
80446982 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
80447046 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
80447062 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
80447125 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
80447142 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
80447188 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:80452520 original size:27 final size:27
Alignment explanation
Indices: 80452490--80452615 Score: 139
Period size: 27 Copynumber: 4.7 Consensus size: 27
80452480 CCAAAGTACT
* *
80452490 CTCGATTTATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* *
80452517 CTCGACTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* *
80452544 CTTGATTTACAGAATTACTGGTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
*
80452571 CTC-AGTTTACAAAATTA-TCGTTTTACC
1 CTCGA-TTTACAGAATTACT-GTTTTACC
* *
80452598 CTCGATTTAAAAAATTAC
1 CTCGATTTACAGAATTAC
80452616 CAAAATACCC
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.02
27 80 0.96
28 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (27 bp):
CTCGATTTACAGAATTACTGTTTTACC
Found at i:80452551 original size:54 final size:54
Alignment explanation
Indices: 80452490--80452615 Score: 155
Period size: 54 Copynumber: 2.3 Consensus size: 54
80452480 CCAAAGTACT
* * *
80452490 CTCGATTTATAGAATTACTATTTTACCCTC-GACTTACAGAATTACCGTTTTACC
1 CTCGATTTAAAGAATTACTAGTTTACCCTCAG-CTTACAAAATTACCGTTTTACC
* * * * *
80452544 CTTGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCGTTTTACC
1 CTCGATTTAAAGAATTACTAGTTTACCCTCAGCTTACAAAATTACCGTTTTACC
*
80452598 CTCGATTTAAAAAATTAC
1 CTCGATTTAAAGAATTAC
80452616 CAAAATACCC
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
54 60 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (54 bp):
CTCGATTTAAAGAATTACTAGTTTACCCTCAGCTTACAAAATTACCGTTTTACC
Found at i:80452624 original size:27 final size:27
Alignment explanation
Indices: 80452601--80452652 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
80452591 TTTTACCCTC
80452601 GATTTAAAAAATTACCAAAATACCCAT
1 GATTTAAAAAATTACCAAAATACCCAT
* ** *
80452628 GGTTTGCAAAATTACTAAAATACCC
1 GATTTAAAAAATTACCAAAATACCC
80452653 CTATAGGGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.27
Consensus pattern (27 bp):
GATTTAAAAAATTACCAAAATACCCAT
Found at i:80452665 original size:27 final size:27
Alignment explanation
Indices: 80452635--80452698 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
80452625 CATGGTTTGC
*
80452635 AAAATTACTAAAATACCCCTATAGGGT
1 AAAATTACCAAAATACCCCTATAGGGT
* *
80452662 AAAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCAAAATACCCCTATAGGGT
*
80452689 AGAATTACCA
1 AAAATTACCA
80452699 TTTTGCCCCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.23
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTATAGGGT
Found at i:80458056 original size:49 final size:49
Alignment explanation
Indices: 80457996--80458447 Score: 768
Period size: 49 Copynumber: 9.3 Consensus size: 49
80457986 GTATGAGATA
80457996 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
80458045 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
80458094 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
80458143 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
80458192 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
80458241 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
80458290 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
80458339 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * *
80458386 TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
80458433 TATAAATGTGATAAG
1 TATATATGTGATAAG
80458448 TCCCGAAGGG
Statistics
Matches: 388, Mismatches: 15, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
47 56 0.14
49 332 0.86
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:80464436 original size:46 final size:46
Alignment explanation
Indices: 80464378--80464507 Score: 156
Period size: 46 Copynumber: 2.8 Consensus size: 46
80464368 ATGTCCCGTA
* * *
80464378 GCCGATGCATGTCCTAGACATGTTTTACACTGGCTTAC-C-TCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC--ACTCGTCTCAAG
* * *
80464424 GCCGATGCATGTCCCGGACATGTCTTACATTGGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCGTCTCAAG
80464470 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCAC
80464508 ACAAATTACC
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
44 2 0.03
45 1 0.01
46 42 0.58
47 13 0.18
48 14 0.19
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCGTCTCAAG
Found at i:80466918 original size:27 final size:28
Alignment explanation
Indices: 80466873--80466951 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 28
80466863 AAAATTCTTT
* * *
80466873 AGCTCAGCTTTATGAGAGCTCTCTGATA
1 AGCTCTGCTTTGTGTGAGCTCTCTGATA
* *
80466901 AG-TTTGCTTTGTGTGAGCTCTCT-ATT
1 AGCTCTGCTTTGTGTGAGCTCTCTGATA
* *
80466927 GGCTCTACTTTGTGTGAGCTCTCTG
1 AGCTCTGCTTTGTGTGAGCTCTCTG
80466952 CTTAGGTTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.07
27 36 0.88
28 2 0.05
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (28 bp):
AGCTCTGCTTTGTGTGAGCTCTCTGATA
Found at i:80477362 original size:28 final size:28
Alignment explanation
Indices: 80477331--80477398 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
80477321 TTGATATTTT
* *
80477331 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGACAGTCTCAATATCTC
*
80477359 GCACACTAAGTGACAGTCTCAATATTTC
1 GCACACTAAGTGACAGTCTCAATATCTC
* *
80477387 GTACACTGAGTG
1 GCACACTAAGTG
80477399 CCATATTTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
GCACACTAAGTGACAGTCTCAATATCTC
Found at i:80483463 original size:28 final size:28
Alignment explanation
Indices: 80483430--80483495 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
80483420 TTTGAATCAT
** *
80483430 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCACACACTAAGTGCCATTC
*
80483458 TCAATATCTCACACACTAAGTGCCATTC
1 TCAATATTTCACACACTAAGTGCCATTC
80483486 TCAATATTTC
1 TCAATATTTC
80483496 GTTCATTGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (28 bp):
TCAATATTTCACACACTAAGTGCCATTC
Found at i:80486819 original size:13 final size:13
Alignment explanation
Indices: 80486801--80486825 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80486791 GAAATATTAA
80486801 TTATAATAATTTG
1 TTATAATAATTTG
80486814 TTATAATAATTT
1 TTATAATAATTT
80486826 TAGTAAACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
TTATAATAATTTG
Found at i:80489730 original size:29 final size:29
Alignment explanation
Indices: 80489696--80489798 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
80489686 TAATCAGCCG
** *
80489696 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
80489725 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
80489754 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
80489783 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
80489799 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:80499807 original size:17 final size:17
Alignment explanation
Indices: 80499785--80499819 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
80499775 TATCATAAGT
80499785 TCACTTTCAACTAATCG
1 TCACTTTCAACTAATCG
80499802 TCACTTTCAACTAATCG
1 TCACTTTCAACTAATCG
80499819 T
1 T
80499820 GAACTCACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.29, G:0.06, T:0.37
Consensus pattern (17 bp):
TCACTTTCAACTAATCG
Found at i:80500160 original size:48 final size:50
Alignment explanation
Indices: 80500089--80500308 Score: 196
Period size: 48 Copynumber: 4.5 Consensus size: 50
80500079 TAAAGTACCA
* *
80500089 ATGCCATGT-CCACGACATGGTCTTACATGAATC-CACTTATCATCATC-G
1 ATGCCATGTCCCA-GACATGGTCTTACATGCAGCACACTTATCATCATCTG
* *
80500137 ATGCCATGTCCCAGACATGGTCTTACACTG--GCACACATATCATC-GCTG
1 ATGCCATGTCCCAGACATGGTCTTACA-TGCAGCACACTTATCATCATCTG
*
80500185 ATGCCATGTCACAGACATGGTCTTACA--CAGGCACA-TATATCATCA-CTG
1 ATGCCATGTCCCAGACATGGTCTTACATGCA-GCACACT-TATCATCATCTG
* * * * * *
80500233 ATGCCATGTCCTAGACATGGTCTT--ATACAGGCACACATCTCA-GATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACATGCA-GCACACTTATCATCATCT-G
80500282 ATGCCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
80500309 CGGAATCTCA
Statistics
Matches: 144, Mismatches: 12, Indels: 29
0.78 0.06 0.16
Matches are distributed among these distances:
46 1 0.01
47 3 0.02
48 110 0.76
49 29 0.20
51 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACATGCAGCACACTTATCATCATCTG
Found at i:80500253 original size:96 final size:96
Alignment explanation
Indices: 80500126--80500309 Score: 266
Period size: 96 Copynumber: 1.9 Consensus size: 96
80500116 TGAATCCACT
*
80500126 TATCATCATCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATC-ATCG-CTGATGC
1 TATCATCATCGATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCAAT-GTC-GATGC
80500189 CATGTCACAGACATGGTCTTACACAGGCACATA
64 CATGTCACAGACATGGTCTTACACAGGCACATA
* * *
80500222 TATCATCA-CTGATGCCATGTCCTAGACATGGTCTTATACAGGCACACATCTCAGATGTCGATGC
1 TATCATCATC-GATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCA-ATGTCGATGC
*
80500286 CATGTCCCAGACATGGTCTTACAC
64 CATGTCACAGACATGGTCTTACAC
80500310 GGAATCTCAT
Statistics
Matches: 79, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
95 1 0.01
96 46 0.58
97 29 0.37
98 3 0.04
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (96 bp):
TATCATCATCGATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCAATGTCGATGCCA
TGTCACAGACATGGTCTTACACAGGCACATA
Found at i:80504524 original size:48 final size:47
Alignment explanation
Indices: 80504308--80504675 Score: 227
Period size: 48 Copynumber: 7.8 Consensus size: 47
80504298 ATAGGGTATG
* * * * *
80504308 ATGCCGATGCCATGTCCTAGGCATGGTCTTACACTGGCTCATCCATC
1 ATGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACCTCTATC
* * * *** *
80504355 AAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTACCGAAATTG
1 ATGCCGATGCCATGTCCTAGACATGGTCTTACACTGAC-ACCTCTA-TC
* * * * *
80504404 AGGCCGACGCCATGTCCTAGACATGTTCTTACACT-AGCTCTCACATATCC
1 ATGCCGATGCCATGTCCTAGACATGGTCTTACACTGA-CAC-CTC-TAT-C
* **
80504454 ATGCCGATGCCATGTCCCAGACACAGTCTTACACTGACACCTCTATAC
1 ATGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACCTCTAT-C
**
80504502 ATGCCGATGCCATGTCCTAGACATGGTCTTACACTGACAAATC--TC
1 ATGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACCTCTATC
* * * * *
80504547 ATAGTCGATG-CATGTCCCAGACAT-GTCTTACATTGGCTCACATC--TC
1 AT-GCCGATGCCATGTCCTAGACATGGTCTTACACT-G-ACACCTCTATC
* * * * *
80504593 AAGGTCGATG-CATGTCCCAGACAT-GTCTTACACT-AGC-TCTCGTCTC
1 -ATGCCGATGCCATGTCCTAGACATGGTCTTACACTGA-CACCTC-TATC
* *
80504639 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTG
1 -ATGCCGATGCCATGTCCTAGACATGGTCTTACACTG
80504676 GCACACAAAT
Statistics
Matches: 255, Mismatches: 48, Indels: 34
0.76 0.14 0.10
Matches are distributed among these distances:
43 2 0.01
44 10 0.04
45 17 0.07
46 53 0.21
47 48 0.19
48 56 0.22
49 36 0.14
50 32 0.13
51 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
ATGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACCTCTATC
Found at i:80504600 original size:46 final size:47
Alignment explanation
Indices: 80504312--80504682 Score: 262
Period size: 46 Copynumber: 7.8 Consensus size: 47
80504302 GGTATGATGC
* * *
80504312 CGATGCCATGTCCTAGGCATGGTCTTACACTGG--CTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACACAT-C-TCAAGT
* * * * *
80504359 CGATGCCATGTCCCAGACATGGTCTTACACTGACTACCGAAAT-TGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-A-C-ACATCTCAAGT
* * * * * * * *
80504408 CGACGCCATGTCCTAGACATGTTCTTACACTAGCTCTCACATATCCATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-G-GCACACATCT-CAAGT
** * * *
80504458 CGATGCCATGTCCCAGACACAGTCTTACACT-G-ACACCTCTATACATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATC--T-CAAGT
* *
80504506 CGATGCCATGTCCTAGACATGGTCTTACACT-G-ACAAATCTCATAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATCTCA-AGT
* *
80504552 CGATG-CATGTCCCAGACAT-GTCTTACATTGGCTCACATCTCAAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATCTCAA-GT
* * * *
80504598 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAA-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATCTCAAGT
80504642 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACACA
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTGGCACACA
80504683 AATAACCTGA
Statistics
Matches: 260, Mismatches: 45, Indels: 37
0.76 0.13 0.11
Matches are distributed among these distances:
44 10 0.04
45 18 0.07
46 64 0.25
47 44 0.17
48 57 0.22
49 33 0.13
50 30 0.12
51 2 0.01
52 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATCTCAAGT
Found at i:80505049 original size:30 final size:30
Alignment explanation
Indices: 80505013--80505087 Score: 150
Period size: 30 Copynumber: 2.5 Consensus size: 30
80505003 CATAATTGGG
80505013 CAAAATGACCATTTTGCCCTTAGACTTTCA
1 CAAAATGACCATTTTGCCCTTAGACTTTCA
80505043 CAAAATGACCATTTTGCCCTTAGACTTTCA
1 CAAAATGACCATTTTGCCCTTAGACTTTCA
80505073 CAAAATGACCATTTT
1 CAAAATGACCATTTT
80505088 ACCCCTTGAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.32, C:0.25, G:0.09, T:0.33
Consensus pattern (30 bp):
CAAAATGACCATTTTGCCCTTAGACTTTCA
Found at i:80509243 original size:21 final size:21
Alignment explanation
Indices: 80509217--80509258 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
80509207 ATGATAAGTA
80509217 CTTGATTTGTTCTTAATTATG
1 CTTGATTTGTTCTTAATTATG
80509238 CTTGATTTGTTCTTAATTATG
1 CTTGATTTGTTCTTAATTATG
80509259 TGTTCTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.10, G:0.14, T:0.57
Consensus pattern (21 bp):
CTTGATTTGTTCTTAATTATG
Found at i:80515826 original size:21 final size:22
Alignment explanation
Indices: 80515802--80515844 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
80515792 GCCTCTTTAA
80515802 ACTCATATTAT-T-TTTATTTTT
1 ACTCATATT-TCTATTTATTTTT
*
80515823 ACTCTTATTTCTATTTATTTTT
1 ACTCATATTTCTATTTATTTTT
80515845 GAAGACTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 1 0.05
21 9 0.47
22 9 0.47
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.67
Consensus pattern (22 bp):
ACTCATATTTCTATTTATTTTT
Found at i:80528738 original size:40 final size:40
Alignment explanation
Indices: 80528668--80528936 Score: 359
Period size: 40 Copynumber: 6.8 Consensus size: 40
80528658 CGGATGATAA
* * *
80528668 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
80528708 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
80528748 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCT
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
80528788 TGAAGCCATTTGTGCGAGTTACTAT-TACAGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATAT-CCGGGCTAAGTCC
* *
80528828 CGAAGGCATTTGTGCGAGTTA-TATAACCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
80528867 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-AGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
80528906 CGAAGACATTTGAGCGAG-TAGCTATATCCGG
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGG
80528937 TTAAATCCTG
Statistics
Matches: 207, Mismatches: 17, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 67 0.32
40 137 0.66
41 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:80529842 original size:45 final size:45
Alignment explanation
Indices: 80529791--80529881 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
80529781 CTTCATGCTT
80529791 GGTTTAGAAGAGAACTAGAAGGAGATTCGGCTATAATTGCATCAA
1 GGTTTAGAAGAGAACTAGAAGGAGATTCGGCTATAATTGCATCAA
80529836 GGTTTAGAAGAGAACTAGAAGGAGATTCGGCTATAATTGCATCAA
1 GGTTTAGAAGAGAACTAGAAGGAGATTCGGCTATAATTGCATCAA
80529881 G
1 G
80529882 ATTAAGGTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.37, C:0.11, G:0.27, T:0.24
Consensus pattern (45 bp):
GGTTTAGAAGAGAACTAGAAGGAGATTCGGCTATAATTGCATCAA
Found at i:80530968 original size:39 final size:39
Alignment explanation
Indices: 80530914--80531107 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
80530904 TGTGAATGAA
* *
80530914 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
80530953 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
80530992 TGGGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * * * **
80531031 TGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGCCTT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
80531071 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
80531108 GTTTGAACGA
Statistics
Matches: 135, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 97 0.72
40 38 0.28
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:80540385 original size:39 final size:40
Alignment explanation
Indices: 80540269--80540471 Score: 272
Period size: 39 Copynumber: 5.2 Consensus size: 40
80540259 CGGATGATAA
* * * *
80540269 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-ACCGGGTTAAGTCC
80540309 CGAAGGCATTTGTGCGAGTTACTATAACCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATAACCGGGTTAAGTCC
80540349 CGAAGGCATTTGTGCGAGTTA-TATAACCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATAACCGGGTTAAGTCC
*
80540388 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-AGTCC
1 CGAAGGCATTTGTGCGAGTTACTATAACCGGGTTAAGTCC
* * * *
80540427 CGAAGACATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATAACCGGGTTAAGTCC
80540466 CGAAGG
1 CGAAGG
80540472 TACTTGGTTT
Statistics
Matches: 148, Mismatches: 11, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
38 5 0.03
39 76 0.51
40 66 0.45
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATAACCGGGTTAAGTCC
Found at i:80540390 original size:79 final size:79
Alignment explanation
Indices: 80540269--80540471 Score: 279
Period size: 79 Copynumber: 2.6 Consensus size: 79
80540259 CGGATGATAA
* * *
80540269 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
*
80540333 TAACCGGGTTAAGTCC
65 TAACCGGGCT-AGTCC
*
80540349 CGAAGGCATTTGTGCGAGTTA-TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
80540413 AACCGGGCTAGTCC
66 AACCGGGCTAGTCC
* * *
80540427 CGAAGACATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGTCCCGAAGG
80540472 TACTTGGTTT
Statistics
Matches: 111, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
77 2 0.02
78 36 0.32
79 53 0.48
80 20 0.18
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
AACCGGGCTAGTCC
Found at i:80556881 original size:44 final size:44
Alignment explanation
Indices: 80556833--80556916 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
80556823 TTGATATCTC
*
80556833 AAAGTCCATGGTT-GTACCATGGCAATTAAGGAAGAATTGATGGA
1 AAAGTCCAT-GTTCATACCATGGCAATTAAGGAAGAATTGATGGA
* * *
80556877 AAAGTCCATGTTCATATCATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGTTCATACCATGGCAATTAAGGAAGAATTGA
80556917 CGGTCAAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 3 0.09
44 32 0.91
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (44 bp):
AAAGTCCATGTTCATACCATGGCAATTAAGGAAGAATTGATGGA
Found at i:80557114 original size:47 final size:47
Alignment explanation
Indices: 80557056--80557177 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
80557046 CCATTGGCAC
*
80557056 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
80557103 TAAGATAAGGATTCCATGTAAGACTATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
80557150 TAAGATAAGGATATCATGTAAGAGCATG
1 TAAGATAAGGATACCATGTAAGACCATG
80557178 CCAAGGCATG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.28
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:80557220 original size:54 final size:54
Alignment explanation
Indices: 80557156--80557323 Score: 182
Period size: 54 Copynumber: 3.1 Consensus size: 54
80557146 TTGGTAAGAT
*
80557156 AAGGATATCATGTAAGAGCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGC
* * * * *
80557210 AAGGAAATCATGTAAGACCATGTCAAGACATGGTA-TGATAAGTTATTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTT-CTATAAGGC
** * * *
80557264 AAAGG-TCCCATGTAAGACCATGCCGAA-GCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATATCATGTAAGACCATGCC-AAGGCATGGAATTGATAAGTTCTATAAGGC
80557317 AAGGATA
1 AAGGATA
80557324 CCACGTCAAA
Statistics
Matches: 93, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
52 4 0.04
53 17 0.18
54 59 0.63
55 13 0.14
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGC
Found at i:80557360 original size:108 final size:108
Alignment explanation
Indices: 80557164--80557361 Score: 258
Period size: 108 Copynumber: 1.8 Consensus size: 108
80557154 ATAAGGATAT
* * *
80557164 CATGTAAGAGCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* *
80557229 ATGTCAAGACATGGTATGATAAGTTATTATAAGGCAAAGGTCC
66 ACGTCAAGACATGGAATGATAAGTTATTATAAGGCAAAGGTCC
* * * *
80557272 CATGTAAGACCATGCCGAA-GCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTCAA-A
1 CATGTAAGACCATGCC-AAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAACCACGT-AAGA
*
80557334 CCACGTCAAGACATGGCAATGGTAAGTT
64 CCACGTCAAGACATGG-AATGATAAGTT
80557362 CAAAAAGGAA
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
107 33 0.43
108 42 0.55
109 2 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ACGTCAAGACATGGAATGATAAGTTATTATAAGGCAAAGGTCC
Found at i:80557381 original size:108 final size:107
Alignment explanation
Indices: 80557164--80557386 Score: 247
Period size: 108 Copynumber: 2.1 Consensus size: 107
80557154 ATAAGGATAT
* * *
80557164 CATGTAAGAGCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* * * *
80557229 ATGTCAAGACATGGTATGATAAGTTATTATAAGGCAAAGGTCC
66 ACGTCAAGACATGGAATGATAAGTTA-TAAAAGGAAAAGGTCC
* * * *
80557272 CATGTAAGACCATGCCGAA-GCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTCAA-A
1 CATGTAAGACCATGCC-AAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAACCACGT-AAGA
*
80557334 CCACGTCAAGACATGGCAATGGTAAGTTCA-AAAAGGAAAAGGTTCC
64 CCACGTCAAGACATGG-AATGATAAGTT-ATAAAAGGAAAAGG-TCC
*
80557380 CAAGTAA
1 CATGTAA
80557387 TCTAAAGAGT
Statistics
Matches: 97, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
107 43 0.44
108 51 0.53
109 3 0.03
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (107 bp):
CATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ACGTCAAGACATGGAATGATAAGTTATAAAAGGAAAAGGTCC
Found at i:80566062 original size:45 final size:44
Alignment explanation
Indices: 80565978--80566062 Score: 107
Period size: 45 Copynumber: 1.9 Consensus size: 44
80565968 ATGTAATCTG
*
80565978 AACTCATTGAGTTGTGTCTGAATTCATGATATATGTGACATCCA
1 AACTCATTGAGTTGTGTCTGAATTCATGATATATATGACATCCA
* * * * *
80566022 AACTTATTGAGTTTTGGTCTGAGTTCGTGATATGTATGACA
1 AACTCATTGAGTTGT-GTCTGAATTCATGATATATATGACA
80566063 CATGTTTTGG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 13 0.38
45 21 0.62
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (44 bp):
AACTCATTGAGTTGTGTCTGAATTCATGATATATATGACATCCA
Found at i:80585205 original size:12 final size:12
Alignment explanation
Indices: 80585188--80585213 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80585178 GAAATAAATA
80585188 AATAAAAACATT
1 AATAAAAACATT
80585200 AATAAAAACATT
1 AATAAAAACATT
80585212 AA
1 AA
80585214 AAAGGAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (12 bp):
AATAAAAACATT
Found at i:80587430 original size:46 final size:46
Alignment explanation
Indices: 80587380--80587555 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
80587370 GATGTTGGCA
80587380 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
80587426 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
80587473 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
80587519 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80587556 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:80587535 original size:93 final size:93
Alignment explanation
Indices: 80587376--80587547 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80587366 CTAGGATGTT
* *
80587376 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80587441 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
80587469 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80587534 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
80587548 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80590543 original size:15 final size:15
Alignment explanation
Indices: 80590504--80590582 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
80590494 GTATCTTGGG
*
80590504 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
80590519 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
80590534 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
80590548 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
80590563 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
80590577 TTTCTT
1 TTTCTT
80590583 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:80590567 original size:29 final size:29
Alignment explanation
Indices: 80590495--80590581 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
80590485 CATAGTATCG
* * * *
80590495 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
80590525 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
80590554 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
80590582 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:80593008 original size:46 final size:46
Alignment explanation
Indices: 80592958--80593133 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
80592948 ATGGTTGGCA
80592958 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
80593004 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
80593051 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
80593097 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80593134 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:80593113 original size:93 final size:93
Alignment explanation
Indices: 80592954--80593125 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80592944 TAGGATGGTT
* *
80592954 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80593019 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
80593047 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80593112 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
80593126 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80595074 original size:40 final size:40
Alignment explanation
Indices: 80595026--80595237 Score: 300
Period size: 40 Copynumber: 5.3 Consensus size: 40
80595016 TCTTCATGAT
* * * *
80595026 TTAG-CCGGATATAACCACACGCCCAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
80595065 TTAACCCGGACATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
80595105 TTAGCCCGGATATAACAACTCACACAAATGCTTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
80595145 TTAGTCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
80595185 TTAGCCCAGATATAACAACTCGCACAAATGCCTTTGGGGC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
80595225 TTAGCCCGGATAT
1 TTAGCCCGGATAT
80595238 CATTCAAATG
Statistics
Matches: 152, Mismatches: 20, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 3 0.02
40 149 0.98
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:80598135 original size:5 final size:5
Alignment explanation
Indices: 80598127--80598191 Score: 78
Period size: 5 Copynumber: 12.6 Consensus size: 5
80598117 TTGTCATCCC
*
80598127 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A-TTT CTTTT ATGTGTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT-T-TT ATTTT
*
80598178 ATTATT CTTTT ATT
1 ATT-TT ATTTT ATT
80598192 ATTTTTGGTA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
4 3 0.06
5 39 0.75
6 6 0.12
7 4 0.08
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.75
Consensus pattern (5 bp):
ATTTT
Found at i:80600499 original size:23 final size:23
Alignment explanation
Indices: 80600459--80600503 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
80600449 GAATAAAGAA
* *
80600459 TTAAATTCGGTTTTAGTTATTTAG
1 TTAAATTCAGTTTAAGTT-TTTAG
80600483 TTAAATT-AGTTTAAGTTTTTA
1 TTAAATTCAGTTTAAGTTTTTA
80600504 ATTATGTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 8 0.42
24 7 0.37
ACGTcount: A:0.29, C:0.02, G:0.13, T:0.56
Consensus pattern (23 bp):
TTAAATTCAGTTTAAGTTTTTAG
Found at i:80602599 original size:37 final size:37
Alignment explanation
Indices: 80602478--80602592 Score: 230
Period size: 37 Copynumber: 3.1 Consensus size: 37
80602468 TATAAAAGAA
80602478 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
80602515 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
80602552 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
80602589 GTCT
1 GTCT
80602593 CGCCCGGAAC
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 78 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:80602755 original size:49 final size:49
Alignment explanation
Indices: 80602695--80603075 Score: 478
Period size: 49 Copynumber: 7.5 Consensus size: 49
80602685 CATATATTTT
*
80602695 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
* *
80602744 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCATC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
80602793 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
80602842 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
* * * * * *
80602891 ACATCGGCCTATCACATCGG-C-CATTAAGCCTCATCACATATACATACACTTTCACGTTCACC
1 ACATCGGCC-AT----TAGGCCTCA-TCA-CAT-AT-ACATACACTTTCA----CA--TTCACC
*
80602953 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
* *
80603002 ACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACATTCATC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
80603051 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
80603076 CATATATGTA
Statistics
Matches: 294, Mismatches: 21, Indels: 34
0.84 0.06 0.10
Matches are distributed among these distances:
49 228 0.78
50 2 0.01
51 2 0.01
52 2 0.01
53 3 0.01
54 5 0.02
55 12 0.04
56 12 0.04
57 5 0.02
58 3 0.01
59 2 0.01
60 1 0.00
61 2 0.01
62 15 0.05
ACGTcount: A:0.30, C:0.34, G:0.09, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:80602815 original size:98 final size:98
Alignment explanation
Indices: 80602695--80603075 Score: 573
Period size: 98 Copynumber: 3.8 Consensus size: 98
80602685 CATATATTTT
* *
80602695 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
1 ACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
80602760 CTCATCACATATACATACACTTTCACGTTCATC
66 CTCATCACATATACATACACTTTCACGTTCATC
* *
80602793 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCATTAGGC
1 ACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
80602858 CTCATCACATATACATACACTTTCACGTTCACCACATCGGCCTATC
66 CTCATCACATATACATACACTTTCACG-T-------T----C-ATC
*
80602904 ACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCATTAGGC
1 ACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
*
80602969 CTCATCACATATACATACACTTTCACATTCATC
66 CTCATCACATATACATACACTTTCACGTTCATC
*
80603002 ACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 ACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
*
80603067 CTTATCACA
66 CTCATCACA
80603076 CATATATGTA
Statistics
Matches: 263, Mismatches: 7, Indels: 26
0.89 0.02 0.09
Matches are distributed among these distances:
98 164 0.62
99 2 0.01
103 1 0.00
106 1 0.00
110 2 0.01
111 93 0.35
ACGTcount: A:0.30, C:0.34, G:0.09, T:0.27
Consensus pattern (98 bp):
ACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
CTCATCACATATACATACACTTTCACGTTCATC
Found at i:80602924 original size:160 final size:160
Alignment explanation
Indices: 80602743--80603059 Score: 571
Period size: 160 Copynumber: 2.0 Consensus size: 160
80602733 TCACATTCAC
* *
80602743 CACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCATCACATCGGCCATTAGG
1 CACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCATTAGG
* *
80602808 CCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCATTAGGCCTCATCACATATACA
66 CCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAAGCCTCATCACATATACA
*
80602873 TACACTTTCACGTTCACCACATCGGCCTAT
131 TACACTTTCACATTCACCACATCGGCCTAT
80602903 CACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCATTAGG
1 CACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCATTAGG
*
80602968 CCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAAGCCTCATCACATATACA
66 CCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAAGCCTCATCACATATACA
*
80603033 TACACTTTCACATTCATCACATCGGCC
131 TACACTTTCACATTCACCACATCGGCC
80603060 ATTAGGCCTT
Statistics
Matches: 150, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
160 150 1.00
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.27
Consensus pattern (160 bp):
CACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCATTAGG
CCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAAGCCTCATCACATATACA
TACACTTTCACATTCACCACATCGGCCTAT
Found at i:80602938 original size:62 final size:62
Alignment explanation
Indices: 80602841--80602961 Score: 233
Period size: 62 Copynumber: 2.0 Consensus size: 62
80602831 TCACGTTCAC
*
80602841 CACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCTAT
1 CACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCTAT
80602903 CACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCC
1 CACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCC
80602962 ATTAGGCCTC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.36, G:0.11, T:0.25
Consensus pattern (62 bp):
CACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCTAT
Found at i:80603000 original size:27 final size:27
Alignment explanation
Indices: 80602970--80603054 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
80602960 CCATTAGGCC
80602970 TCATCACATATACATACACTTTCACAT
1 TCATCACATATACATACACTTTCACAT
** * * *
80602997 TCATCAC--AT-C-GGC-CATTAAGC-C
1 TCATCACATATACATACACTTTCA-CAT
80603019 TCATCACATATACATACACTTTCACAT
1 TCATCACATATACATACACTTTCACAT
80603046 TCATCACAT
1 TCATCACAT
80603055 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 10, Indels: 14
0.63 0.15 0.22
Matches are distributed among these distances:
22 11 0.27
23 2 0.05
24 3 0.07
25 3 0.07
26 2 0.05
27 20 0.49
ACGTcount: A:0.34, C:0.32, G:0.04, T:0.31
Consensus pattern (27 bp):
TCATCACATATACATACACTTTCACAT
Found at i:80603060 original size:209 final size:209
Alignment explanation
Indices: 80602695--80603075 Score: 690
Period size: 209 Copynumber: 1.8 Consensus size: 209
80602685 CATATATTTT
* *
80602695 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
1 ACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
* *
80602760 CTCATCACATATACATACACTTTCACGTTCATCACATCGGCCATTAGGCCTCATCACATATACAT
66 CTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAAGCCTCATCACATATACAT
*
80602825 ACACTTTCACGTTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCAC
131 ACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCAC
80602890 CACATCGGCCTATC
196 CACATCGGCCTATC
*
80602904 ACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCATTAGGC
1 ACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
80602969 CTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAAGCCTCATCACATATACAT
66 CTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAAGCCTCATCACATATACAT
* *
80603034 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
131 ACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACA
80603076 CATATATGTA
Statistics
Matches: 164, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
209 164 1.00
ACGTcount: A:0.30, C:0.34, G:0.09, T:0.27
Consensus pattern (209 bp):
ACATCGGCCATTAAGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
CTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAAGCCTCATCACATATACAT
ACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCAC
CACATCGGCCTATC
Found at i:80606427 original size:2 final size:2
Alignment explanation
Indices: 80606420--80606448 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
80606410 ACTCATTCTT
80606420 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80606449 TCTTACCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80606865 original size:45 final size:45
Alignment explanation
Indices: 80606806--80606893 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
80606796 AAACATTTGT
* * *
80606806 CACATACATGATGAACTTAGACCATAACTCAATAAGTTCAGATGC
1 CACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGATGC
*
80606851 CACATATATCATGAACTCAGACCACAACTCAATAAGTTCAGAT
1 CACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGAT
80606894 CACATAGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.24
Consensus pattern (45 bp):
CACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGATGC
Found at i:80606892 original size:21 final size:21
Alignment explanation
Indices: 80606824--80606897 Score: 53
Period size: 21 Copynumber: 3.4 Consensus size: 21
80606814 TGATGAACTT
*
80606824 AGACCATAACTCAATAAGTTC
1 AGACCACAACTCAATAAGTTC
* *
80606845 AGATGCCACATATATC-ATGAA-CTC
1 AGA--CCACA-A-CTCAAT-AAGTTC
80606869 AGACCACAACTCAATAAGTTC
1 AGACCACAACTCAATAAGTTC
*
80606890 AGATCACA
1 AGACCACA
80606898 TAGTTCCTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
20 4 0.10
21 15 0.38
22 5 0.12
23 4 0.10
24 8 0.20
25 4 0.10
ACGTcount: A:0.42, C:0.26, G:0.11, T:0.22
Consensus pattern (21 bp):
AGACCACAACTCAATAAGTTC
Found at i:80608533 original size:54 final size:54
Alignment explanation
Indices: 80608342--80608603 Score: 312
Period size: 54 Copynumber: 4.9 Consensus size: 54
80608332 TTTCCTTTTT
* * * * * * *
80608342 GAACTTACCATTGTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * * **
80608395 GAACTCACCAATGCCATGCCTTGGCATGGTATTACATGGGA-CCTTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATA
* * * *
80608449 GTAACTTATCAATGCCATGTCTTGACATGGTTTTACATGATTTCCTTGCCTTATA
1 G-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* ***
80608504 GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATCCTTATTTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
80608558 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
80608604 ATCTTACCAA
Statistics
Matches: 180, Mismatches: 25, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
52 2 0.01
53 42 0.23
54 91 0.51
55 43 0.24
56 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.37
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
Found at i:80608637 original size:47 final size:47
Alignment explanation
Indices: 80608582--80608750 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
80608572 CATGCCTTGG
* *
80608582 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
80608629 CATGGTCTTACATGGTATCATTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* *
80608676 CATGGTCTTACATGGTATCTTTGTCATACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
80608723 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
80608751 GTGCCAATAC
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 115 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:80608926 original size:91 final size:91
Alignment explanation
Indices: 80608722--80608964 Score: 335
Period size: 91 Copynumber: 2.6 Consensus size: 91
80608712 CATGTTCCAA
* * * * ** **
80608722 ACATGGTCTTACATGGTATCCTTGTCTTAGTGCCAATACCACATCTTGATGTGGTCTTACATGGA
1 ACATGGTCTTACACGGGATCCTTGCCTTA---CCAATGCCATGTCTTGACATGGTCTTACATGGA
*
80608787 GTCCTTAATCAATGCCGATGCATGTCTTG
63 GTCCTTAATCAATGCCGATGCATGCCTTG
*
80608816 ACATGGTCTTACACAGGATCCTTGCCTTACCAATGCCATGTCTTGA-ATGGTCTTACATGGAGTC
1 ACATGGTCTTACACGGGATCCTTGCCTTACCAATGCCATGTCTTGACATGGTCTTACATGGAGTC
**
80608880 CTTAATCAATTTCGATGCCATGCCTTG
66 CTTAATCAATGCCGATG-CATGCCTTG
80608907 ACATGGTCTTACACGGGATCCTTGCCTTACCAATGCCATGTCTTGACATGGTCTTACA
1 ACATGGTCTTACACGGGATCCTTGCCTTACCAATGCCATGTCTTGACATGGTCTTACA
80608965 CGGTATCCTT
Statistics
Matches: 135, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
90 32 0.24
91 67 0.50
92 11 0.08
94 25 0.19
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (91 bp):
ACATGGTCTTACACGGGATCCTTGCCTTACCAATGCCATGTCTTGACATGGTCTTACATGGAGTC
CTTAATCAATGCCGATGCATGCCTTG
Found at i:80609062 original size:44 final size:44
Alignment explanation
Indices: 80608980--80609063 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
80608970 TCCTTAACCG
* * *
80608980 TCAATTCCTCCTTAAATGCCATGTTATGAACATGGACTTTTCCT
1 TCAATTCCTCCTTAAATGCCATGGTATCAACATAGACTTTTCCT
* *
80609024 TCAATTCTTCCTTAATTGCCATGGTA-CAACCATAGACTTT
1 TCAATTCCTCCTTAAATGCCATGGTATCAA-CATAGACTTT
80609064 GAGATATCAG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 2 0.06
44 32 0.94
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (44 bp):
TCAATTCCTCCTTAAATGCCATGGTATCAACATAGACTTTTCCT
Found at i:80611831 original size:21 final size:21
Alignment explanation
Indices: 80611797--80611840 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
80611787 CTTTTTTTTA
*
80611797 TTTCTTTCTCACTTCCATTCC
1 TTTCTTTCTCACTTCCATCCC
*
80611818 TTTCTTT-TCTACTTTCATCCC
1 TTTCTTTCTC-ACTTCCATCCC
80611839 TT
1 TT
80611841 CTAATTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.09, C:0.34, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTCTTTCTCACTTCCATCCC
Found at i:80612717 original size:23 final size:23
Alignment explanation
Indices: 80612681--80612725 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
80612671 GTCACATTTA
*
80612681 TTTATATATTTAATTT-TTTATT
1 TTTATATATCTAATTTATTTATT
80612703 TTTATTATATCTAATTTATTTAT
1 TTTA-TATATCTAATTTATTTAT
80612726 CAAACCTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 11 0.55
24 5 0.25
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (23 bp):
TTTATATATCTAATTTATTTATT
Found at i:80619827 original size:13 final size:13
Alignment explanation
Indices: 80619809--80619836 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
80619799 TACCTCCACT
80619809 CACTAATCCTTTA
1 CACTAATCCTTTA
80619822 CACTAATCCTTTA
1 CACTAATCCTTTA
80619835 CA
1 CA
80619837 GAGGGATTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (13 bp):
CACTAATCCTTTA
Found at i:80623183 original size:40 final size:40
Alignment explanation
Indices: 80623109--80623319 Score: 257
Period size: 40 Copynumber: 5.3 Consensus size: 40
80623099 ATCTTGGGAT
** * *
80623109 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
80623147 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
80623187 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
80623227 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * **
80623267 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGCAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
80623307 TTAGCCCGGATAT
1 TTAGCCCGGATAT
80623320 CATTCGAATA
Statistics
Matches: 148, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
38 4 0.03
39 16 0.11
40 127 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:80629927 original size:39 final size:39
Alignment explanation
Indices: 80629828--80630009 Score: 154
Period size: 40 Copynumber: 4.6 Consensus size: 39
80629818 CGAATGATGT
* * * *
80629828 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AA
* * * *
80629868 CCGGACTAGGAT-CTGAAGGCATTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
80629907 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGATACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
80629946 CCTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 CC-GGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
**
80629987 CCGGGCTTCGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
80630010 TAAGCGAGTC
Statistics
Matches: 112, Mismatches: 23, Indels: 14
0.75 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.27
40 69 0.62
41 11 0.10
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:80631960 original size:41 final size:41
Alignment explanation
Indices: 80631915--80632032 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
80631905 TGAAAGATAA
80631915 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
80631956 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
80631986 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
80632027 ATGTAG
1 ATGTAG
80632033 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:80631971 original size:71 final size:71
Alignment explanation
Indices: 80631883--80632046 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
80631873 GAGATGTATC
80631883 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80631948 AGGACA
66 AGGACA
80631954 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80632019 AGGACA
66 AGGACA
80632025 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
80632047 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:80639924 original size:27 final size:27
Alignment explanation
Indices: 80639894--80640105 Score: 209
Period size: 27 Copynumber: 7.9 Consensus size: 27
80639884 AATACCTCGA
80639894 TTTGTAAAATTACCAAAATACCCTCAG
1 TTTGTAAAATTACCAAAATACCCTCAG
**
80639921 TTTGTAAAATTACCGTAATACCC-CTAG
1 TTTGTAAAATTACCAAAATACCCTC-AG
**
80639948 TTTGTAAAATTATAAAAATACCCTC-G
1 TTTGTAAAATTACCAAAATACCCTCAG
* ** *
80639974 ATTTATAAAATTACTGAAATACCC-CTG
1 -TTTGTAAAATTACCAAAATACCCTCAG
** *
80640001 ATTTGTAAAATTATTAAAATACCC-CTAA
1 -TTTGTAAAATTACCAAAATACCCTC-AG
*
80640029 TTTGTAAAATTACCAAGATACCCTCAG
1 TTTGTAAAATTACCAAAATACCCTCAG
*
80640056 TTCGTAAAATTACCAAAATACCCTC-G
1 TTTGTAAAATTACCAAAATACCCTCAG
* *
80640082 TAGTGTAAAATTACCGAAATACCC
1 T-TTGTAAAATTACCAAAATACCC
80640106 ATGTAGGATA
Statistics
Matches: 154, Mismatches: 24, Indels: 14
0.80 0.12 0.07
Matches are distributed among these distances:
26 5 0.03
27 147 0.95
28 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCTCAG
Found at i:80639966 original size:54 final size:53
Alignment explanation
Indices: 80639894--80640105 Score: 241
Period size: 54 Copynumber: 3.9 Consensus size: 53
80639884 AATACCTCGA
*
80639894 TTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCGTAATACCCCTAG
1 TTTGTAAAATTACCAAAATACCCTC-GTTTGTAAAATTACCGAAATACCCCTAG
** * *
80639948 TTTGTAAAATTATAAAAATACCCTCGATTTATAAAATTACTGAAATACCCCT-G
1 TTTGTAAAATTACCAAAATACCCTCG-TTTGTAAAATTACCGAAATACCCCTAG
** **
80640001 ATTTGTAAAATTATTAAAATACCCCTAATTTGTAAAATTACC-AAGATA-CCCTCAG
1 -TTTGTAAAATTACCAAAATA-CCCTCGTTTGTAAAATTACCGAA-ATACCCCT-AG
* *
80640056 TTCGTAAAATTACCAAAATACCCTCGTAGTGTAAAATTACCGAAATACCC
1 TTTGTAAAATTACCAAAATACCCTCGT-TTGTAAAATTACCGAAATACCC
80640106 ATGTAGGATA
Statistics
Matches: 133, Mismatches: 16, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
53 13 0.10
54 111 0.83
55 9 0.07
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (53 bp):
TTTGTAAAATTACCAAAATACCCTCGTTTGTAAAATTACCGAAATACCCCTAG
Found at i:80640023 original size:81 final size:80
Alignment explanation
Indices: 80639884--80640105 Score: 234
Period size: 81 Copynumber: 2.8 Consensus size: 80
80639874 TTGGGTTGTT
* ** *
80639884 AATACCTCGATTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCGTAATACCCCTAGT
1 AATACCTCGATTTATAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCAAAATACCCCTAAT
80639949 TTGTAAAATTATAAA
66 TTGTAAAATTATAAA
** * **
80639964 AATACCCTCGATTTATAAAATTACTGAAATACCC-CTGATTTGTAAAATTATTAAAATACCCCTA
1 AATA-CCTCGATTTATAAAATTACCAAAATACCCTCAG-TTTGTAAAATTACCAAAATACCCCTA
**
80640028 ATTTGTAAAATTACCAA
64 ATTTGTAAAATTATAAA
* ** * *
80640045 GATACCCTC-AGTTCGTAAAATTACCAAAATACCCTC-GTAGTGTAAAATTACCGAAATACCC
1 AATA-CCTCGA-TTTATAAAATTACCAAAATACCCTCAGT-TTGTAAAATTACCAAAATACCC
80640106 ATGTAGGATA
Statistics
Matches: 117, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
80 8 0.07
81 108 0.92
82 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (80 bp):
AATACCTCGATTTATAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCAAAATACCCCTAAT
TTGTAAAATTATAAA
Found at i:80640442 original size:26 final size:26
Alignment explanation
Indices: 80640404--80640455 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
80640394 TTTGCCACAT
* *
80640404 TTACTGTTGCTGGCAGCTATGCTGCA
1 TTACTATTACTGGCAGCTATGCTGCA
*
80640430 TTACTATTACTGGCAGCTTTGCTGCA
1 TTACTATTACTGGCAGCTATGCTGCA
80640456 ATATTGGTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
TTACTATTACTGGCAGCTATGCTGCA
Found at i:80640609 original size:28 final size:28
Alignment explanation
Indices: 80640577--80640643 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 28
80640567 CCTGTTATTG
*
80640577 ACACTGTTACTGTATTGGGCT-TAGGCCC
1 ACACTGTTACTGTATAGGGCTAT-GGCCC
80640605 ACACTGTTACTGTATAGGGCTATGGCCC
1 ACACTGTTACTGTATAGGGCTATGGCCC
*
80640633 AGACTG-TACTG
1 ACACTGTTACTG
80640644 ATACTGTATA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 5 0.14
28 30 0.83
29 1 0.03
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (28 bp):
ACACTGTTACTGTATAGGGCTATGGCCC
Found at i:80645031 original size:40 final size:40
Alignment explanation
Indices: 80644946--80645096 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
80644936 AATTGAATGA
* * *
80644946 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
80644986 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
80645027 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
80645066 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
80645097 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:80645110 original size:40 final size:40
Alignment explanation
Indices: 80644983--80645112 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
80644973 ATGCTGGAAA
* * * *
80644983 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
80645023 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
80645063 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
80645103 TTATATCCGG
1 TTATATCCGG
80645113 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:80653040 original size:40 final size:40
Alignment explanation
Indices: 80652955--80653105 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
80652945 AATTGAATGA
* * *
80652955 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
80652995 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
80653036 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
80653075 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
80653106 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:80653119 original size:40 final size:40
Alignment explanation
Indices: 80652992--80653121 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
80652982 ATGCTGGAAA
* * * *
80652992 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
80653032 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
80653072 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
80653112 TTATATCCGG
1 TTATATCCGG
80653122 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:80657782 original size:21 final size:20
Alignment explanation
Indices: 80657758--80657797 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
80657748 GTCAGGACGT
80657758 AAGCACACAGGCTACTCGCAC
1 AAGCACACAGG-TACTCGCAC
**
80657779 AAGCTGACAGGTACTCGCA
1 AAGCACACAGGTACTCGCA
80657798 ACACATGTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.33, C:0.33, G:0.23, T:0.12
Consensus pattern (20 bp):
AAGCACACAGGTACTCGCAC
Found at i:80668571 original size:22 final size:22
Alignment explanation
Indices: 80668541--80668597 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
80668531 GTCCCAGGGT
* *
80668541 CACATGGGCGTGTCGCTTGGAC
1 CACATGGGCGTGTCACTTAGAC
*
80668563 CACACGGGCGTGTCACTTAGAC
1 CACATGGGCGTGTCACTTAGAC
*
80668585 CACATGAGCGTGT
1 CACATGGGCGTGT
80668598 GAGCCTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (22 bp):
CACATGGGCGTGTCACTTAGAC
Found at i:80677222 original size:37 final size:37
Alignment explanation
Indices: 80677169--80677259 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
80677159 TTATAAAGAA
80677169 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
80677206 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
80677243 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
80677260 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:80677410 original size:49 final size:49
Alignment explanation
Indices: 80677355--80677707 Score: 544
Period size: 49 Copynumber: 7.4 Consensus size: 49
80677345 TTTTATTTCA
80677355 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
80677404 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
80677453 GCCATTAGG------C-C-TATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
80677494 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
80677543 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
80677592 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATC-CATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
80677640 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
80677689 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
80677708 CATATATGTA
Statistics
Matches: 282, Mismatches: 13, Indels: 18
0.90 0.04 0.06
Matches are distributed among these distances:
41 39 0.14
42 1 0.00
43 1 0.00
47 1 0.00
48 47 0.17
49 193 0.68
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:80677528 original size:139 final size:143
Alignment explanation
Indices: 80677355--80677707 Score: 563
Period size: 139 Copynumber: 2.5 Consensus size: 143
80677345 TTTTATTTCA
* *
80677355 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
80677420 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCT-AT-AC-AT-A-CACTTTCA
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACAATAACCACTTTCA
80677480 CATTCACCACATCG
131 CATTCACC-CATCG
* *
80677494 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
80677559 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATCCACTT
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACA-ATA-A-CCACTT
*
80677624 TCACATTCATCCATCG
128 TCACATTCACCCATCG
* * *
80677640 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTGGCCATTCGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
80677705 ACA
66 ACA
80677708 CATATATGTA
Statistics
Matches: 196, Mismatches: 10, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
139 106 0.54
140 2 0.01
141 2 0.01
143 2 0.01
145 1 0.01
146 68 0.35
147 15 0.08
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (143 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACAATAACCACTTTCA
CATTCACCCATCG
Found at i:80677573 original size:98 final size:97
Alignment explanation
Indices: 80677355--80677707 Score: 569
Period size: 90 Copynumber: 3.7 Consensus size: 97
80677345 TTTTATTTCA
80677355 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
* *
80677420 ACATATACATACACTTTCACATTCACCACATCG
66 ACATATACATCCACTTTCACATTCATC-CATCG
80677453 GCCATTAGG------C-C-TATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
80677510 ACATATACATCCACTTTCACATTCATCACATCG
66 ACATATACATCCACTTTCACATTCATC-CATCG
80677543 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
80677608 ACATATACATCCACTTTCACATTCATCCATCG
66 ACATATACATCCACTTTCACATTCATCCATCG
* * * * *
80677640 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTGGCCATTCGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
80677705 ACA
66 ACA
80677708 CATATATGTA
Statistics
Matches: 240, Mismatches: 7, Indels: 17
0.91 0.03 0.06
Matches are distributed among these distances:
90 86 0.36
91 1 0.00
92 1 0.00
96 1 0.00
97 69 0.29
98 82 0.34
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (97 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
ACATATACATCCACTTTCACATTCATCCATCG
Found at i:80679894 original size:40 final size:40
Alignment explanation
Indices: 80679848--80680044 Score: 342
Period size: 40 Copynumber: 4.9 Consensus size: 40
80679838 AGCCCGGTTA
*
80679848 TAGTAACTCGCACCAATGCCTTCGGGACTTAGCCC-GAATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA-T
*
80679888 TGGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT
* *
80679928 TAGTTACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT
80679968 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT
80680008 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
80680045 TTATCATCCG
Statistics
Matches: 149, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
40 146 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT
Found at i:80687552 original size:24 final size:24
Alignment explanation
Indices: 80687519--80687571 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
80687509 CTCAAGATAC
*
80687519 AAAATGCAAAATTCTAAGTATTGA
1 AAAATACAAAATTCTAAGTATTGA
80687543 AAAATACAAAATTCTAAGTATTGA
1 AAAATACAAAATTCTAAGTATTGA
80687567 AAAAT
1 AAAAT
80687572 GGTCAAAAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.55, C:0.08, G:0.09, T:0.28
Consensus pattern (24 bp):
AAAATACAAAATTCTAAGTATTGA
Found at i:80687650 original size:20 final size:20
Alignment explanation
Indices: 80687622--80687663 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
80687612 GAATTCAAGA
*
80687622 TCATAATAA-TGAAATGTTTT
1 TCATAATAAGT-AAATGGTTT
*
80687642 TCATCATAAGTAAATGGTTT
1 TCATAATAAGTAAATGGTTT
80687662 TC
1 TC
80687664 TATGTTCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.43
Consensus pattern (20 bp):
TCATAATAAGTAAATGGTTT
Found at i:80691066 original size:20 final size:20
Alignment explanation
Indices: 80691041--80691079 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80691031 TAAATTTCAA
*
80691041 ATATAAAATATTCATCAATT
1 ATATAAAATACTCATCAATT
*
80691061 ATATAAAATGCTCATCAAT
1 ATATAAAATACTCATCAAT
80691080 AAACTTCACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.36
Consensus pattern (20 bp):
ATATAAAATACTCATCAATT
Found at i:80692587 original size:2 final size:2
Alignment explanation
Indices: 80692580--80692608 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
80692570 TTAGTTTAGA
80692580 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80692609 AACGTAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80693592 original size:23 final size:22
Alignment explanation
Indices: 80693553--80693597 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
80693543 GATGATAAGT
* *
80693553 ATTTCTACAAATTATAAGAAAA
1 ATTTCTAAAAATGATAAGAAAA
*
80693575 ATTTCTAGAAAATGATAATAAAA
1 ATTTCTA-AAAATGATAAGAAAA
80693598 GAAAATCTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.31
Consensus pattern (22 bp):
ATTTCTAAAAATGATAAGAAAA
Found at i:80698574 original size:27 final size:27
Alignment explanation
Indices: 80698491--80698576 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 27
80698481 AATAATGGTT
* * *
80698491 GAGGGCTTGTCAGAGGCGGCACCGGTG
1 GAGGGCATGCCAGAGGCGGCACCAGTG
*
80698518 GAAGGCATGCCAGAGGCGGCACCAGTG
1 GAGGGCATGCCAGAGGCGGCACCAGTG
* *
80698545 GAGGGCATGCTAGAGGCGGCACTAGTG
1 GAGGGCATGCCAGAGGCGGCACCAGTG
80698572 GAGGG
1 GAGGG
80698577 TTGTCAGAGG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.21, C:0.21, G:0.47, T:0.12
Consensus pattern (27 bp):
GAGGGCATGCCAGAGGCGGCACCAGTG
Found at i:80698729 original size:18 final size:19
Alignment explanation
Indices: 80698708--80698743 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
80698698 GAGAAGAGAA
80698708 GAGAAGAAAG-AAAGAAAT
1 GAGAAGAAAGAAAAGAAAT
80698726 GAGAAGAAAGAAAAGAAA
1 GAGAAGAAAGAAAAGAAA
80698744 AGGTAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (19 bp):
GAGAAGAAAGAAAAGAAAT
Found at i:80698847 original size:22 final size:22
Alignment explanation
Indices: 80698808--80698857 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
80698798 ATTTTGTCAG
* **
80698808 TATTATATAGTTTGTTTAGTGT
1 TATTTTATAGTTTGTTTAAAGT
80698830 TATTTTATA-TTTGTTTTAAAGT
1 TATTTTATAGTTTG-TTTAAAGT
80698852 TATTTT
1 TATTTT
80698858 GTTTATTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (22 bp):
TATTTTATAGTTTGTTTAAAGT
Found at i:80698954 original size:27 final size:27
Alignment explanation
Indices: 80698924--80698975 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
80698914 TAAAAATTTT
*
80698924 AATATATTTGATATTGTTAGAAATGAC
1 AATAAATTTGATATTGTTAGAAATGAC
80698951 AATAAATTTGATATTGTTAGAAATG
1 AATAAATTTGATATTGTTAGAAATG
80698976 GACTATTATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.42, C:0.02, G:0.15, T:0.40
Consensus pattern (27 bp):
AATAAATTTGATATTGTTAGAAATGAC
Found at i:80707600 original size:84 final size:85
Alignment explanation
Indices: 80707348--80707648 Score: 493
Period size: 85 Copynumber: 3.6 Consensus size: 85
80707338 AGCGAAGATA
* * *
80707348 AGATCTGT-AATTTTAGCCTGTTACCCTACTGCTTAAGGGGTTAAGACGGGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
80707412 CACCACTGCTCGGA-GAG-CC
66 CACCACTGCTC-GATGAGCCC
*
80707431 AGGATCTGTAAATTTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCT
1 A-GATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCT
* *
80707496 CCACCACTGCTCGGTAAGCCC
65 CCACCACTGCTCGATGAGCCC
80707517 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTA-GGGGTTAAGGCGAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
80707581 CACCACTGCTCGATGAGCCC
66 CACCACTGCTCGATGAGCCC
*
80707601 AGATCTGTAAATTTTAGCCTATTACCCTACTGCTTAGGGGGTTAAGGC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGC
80707649 TTGTATCTTT
Statistics
Matches: 203, Mismatches: 10, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
83 1 0.00
84 89 0.44
85 110 0.54
86 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (85 bp):
AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
CACCACTGCTCGATGAGCCC
Found at i:80710077 original size:17 final size:19
Alignment explanation
Indices: 80710037--80710079 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
80710027 AGTATACGGT
*
80710037 CAAAATGTTTATGAAGTGA
1 CAAAATGTGTATGAAGTGA
*
80710056 AAAAATGTGT-TGAA-TGA
1 CAAAATGTGTATGAAGTGA
80710073 CAAAATG
1 CAAAATG
80710080 ATGACCAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 9 0.43
18 4 0.19
19 8 0.38
ACGTcount: A:0.47, C:0.05, G:0.21, T:0.28
Consensus pattern (19 bp):
CAAAATGTGTATGAAGTGA
Found at i:80718817 original size:21 final size:21
Alignment explanation
Indices: 80718791--80718835 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
80718781 GCTGGCTTAT
* *
80718791 CATGTTGTTCTGTGATTCCAG
1 CATGTTGTTCTGGGACTCCAG
*
80718812 CATGTTTTTCTGGGACTCCAG
1 CATGTTGTTCTGGGACTCCAG
80718833 CAT
1 CAT
80718836 TTGATCCCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (21 bp):
CATGTTGTTCTGGGACTCCAG
Found at i:80721562 original size:40 final size:40
Alignment explanation
Indices: 80721507--80721716 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80721497 AACATTGGAA
80721507 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80721547 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80721587 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
80721627 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
80721666 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
80721707 CTATATCCGG
1 ATATATCCGG
80721717 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:80729696 original size:40 final size:40
Alignment explanation
Indices: 80729641--80729850 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80729631 AACATTGGAA
80729641 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80729681 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80729721 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
80729761 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
80729800 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
80729841 CTATATCCGG
1 ATATATCCGG
80729851 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:80733858 original size:50 final size:50
Alignment explanation
Indices: 80733798--80734016 Score: 151
Period size: 50 Copynumber: 4.4 Consensus size: 50
80733788 GGAATTGAGT
* * *
80733798 ATATTTGACCACATAGGTATGTACATAAGTGATGTTGTATTGGATCTTGA
1 ATATTCGACCATATAGGTATGTACATAAGTGATGTTATATTGGATCTTGA
* * * * *
80733848 ATATTCGACCATGAT-GGTATGCACA-AATGTGATATTATTTTTGAAT-TTGT
1 ATATTCGACCAT-ATAGGTATGTACATAA-GTGATGTTA-TATTGGATCTTGA
* * * * * * * *
80733898 ATATTTGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTTGC
1 ATATTCGACCATATAGGTATGTACATAAGTGATGTTATATTGGATCTTGA
* * * * * *
80733948 ATATTCGACCATATAGGTAAT-CACATATGTGATATTAAATTTGATCTTGC
1 ATATTCGACCATATAGGT-ATGTACATAAGTGATGTTATATTGGATCTTGA
*
80733998 ATATT-TAGCCATATAGGTA
1 ATATTCGA-CCATATAGGTA
80734017 AGCGCATATG
Statistics
Matches: 134, Mismatches: 27, Indels: 17
0.75 0.15 0.10
Matches are distributed among these distances:
49 10 0.07
50 114 0.85
51 10 0.07
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (50 bp):
ATATTCGACCATATAGGTATGTACATAAGTGATGTTATATTGGATCTTGA
Found at i:80733978 original size:100 final size:100
Alignment explanation
Indices: 80733796--80734030 Score: 278
Period size: 100 Copynumber: 2.4 Consensus size: 100
80733786 TGGGAATTGA
* * * * **
80733796 GTATATTTGACCACATAGGTATGTACATAAGTGATGTTGTATTGGATCTTGAATATTCGACCATG
1 GTATATTTGGCCATATAGGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACCATG
**
80733861 ATGGTATGCACAAATGTGATATTATTTTTGAAT-TT
66 ATGGTATGCACAAATGTGATATTAAATTTG-ATCTT
* * *
80733896 GTATATTTGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTTGCATATTCGACCAT-
1 GTATATTTGGCCATATAGGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACCATG
*
80733960 ATAGGTAAT-CACATATGTGATATTAAATTTGATCTT
66 AT-GGT-ATGCACAAATGTGATATTAAATTTGATCTT
* * **
80733996 GCATATTTAGCCATATAGGTAAGCGCATATGTGAT
1 GTATATTTGGCCATATAGGTAAGTACATATGTGAT
80734031 ATTATATCTA
Statistics
Matches: 115, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
99 4 0.03
100 109 0.95
101 2 0.02
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (100 bp):
GTATATTTGGCCATATAGGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACCATG
ATGGTATGCACAAATGTGATATTAAATTTGATCTT
Found at i:80734017 original size:50 final size:50
Alignment explanation
Indices: 80733869--80734053 Score: 196
Period size: 50 Copynumber: 3.7 Consensus size: 50
80733859 TGATGGTATG
* ** * * *
80733869 CACAAATGTGATATTATTTTTGAAT-TTGTATATTTGGCCATATAAGTAAGT
1 CACATATGTGATATTAAATTTG-ATCTTGCATATTTAGCCATATAGGTAA-T
* *
80733920 -ACATATGTGATGTTAAATTTGATCTTGCATA-TTCGACCATATAGGTAAT
1 CACATATGTGATATTAAATTTGATCTTGCATATTTAG-CCATATAGGTAAT
*
80733969 CACATATGTGATATTAAATTTGATCTTGCATATTTAGCCATATAGGTAAG
1 CACATATGTGATATTAAATTTGATCTTGCATATTTAGCCATATAGGTAAT
* * * * *
80734019 CGCATATGTGATATTATATCTAATCTTGTATATTT
1 CACATATGTGATATTAAATTTGATCTTGCATATTT
80734054 GGTCAAATAA
Statistics
Matches: 115, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
49 6 0.05
50 106 0.92
51 3 0.03
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (50 bp):
CACATATGTGATATTAAATTTGATCTTGCATATTTAGCCATATAGGTAAT
Found at i:80734045 original size:100 final size:100
Alignment explanation
Indices: 80733841--80734052 Score: 250
Period size: 100 Copynumber: 2.1 Consensus size: 100
80733831 GTTGTATTGG
** * *
80733841 ATCTTGAATATTCGACCATGATGGTATGCACAAATGTGATATTATTTTTGAATTTGTATATTTGG
1 ATCTTGAATATTCGACCATGATGGTATGCACAAATGTGATATTAAATTTGAATTTGCATATTTAG
* * * *
80733906 CCATATAAGTAAGTACATATGTGATGTTAAATTTG
66 CCATATAAGTAAGCACATATGTGATATTAAATCTA
* *
80733941 ATCTTGCATATTCGACCAT-ATAGGTAAT-CACATATGTGATATTAAATTTG-ATCTTGCATATT
1 ATCTTGAATATTCGACCATGAT-GGT-ATGCACAAATGTGATATTAAATTTGAAT-TTGCATATT
* * *
80734003 TAGCCATATAGGTAAGCGCATATGTGATATTATATCTA
63 TAGCCATATAAGTAAGCACATATGTGATATTAAATCTA
*
80734041 ATCTTGTATATT
1 ATCTTGAATATT
80734053 TGGTCAAATA
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
99 4 0.04
100 89 0.94
101 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (100 bp):
ATCTTGAATATTCGACCATGATGGTATGCACAAATGTGATATTAAATTTGAATTTGCATATTTAG
CCATATAAGTAAGCACATATGTGATATTAAATCTA
Found at i:80735151 original size:2 final size:2
Alignment explanation
Indices: 80735146--80735182 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
80735136 GATATATCTG
80735146 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80735183 GAATATGAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:80735188 original size:10 final size:9
Alignment explanation
Indices: 80735146--80735188 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 9
80735136 GATATATCTG
80735146 TATATATATA
1 TATATATA-A
80735156 TATATATATA
1 TATATATA-A
80735166 TATATATATA
1 TATATATA-A
80735176 TATATATGAA
1 TATATAT-AA
80735186 TAT
1 TAT
80735189 GAACTGTGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 31 0.97
11 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (9 bp):
TATATATAA
Found at i:80739523 original size:41 final size:41
Alignment explanation
Indices: 80739419--80739537 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 41
80739409 ATATGTGTTC
* *
80739419 TCATGTAAGACCATGTCTGGGACGTTGGCATTGATTTGTGAT
1 TCATGTAAGACCATGTCTGGGAC-ATGGCATCGATTTGTGAT
*
80739461 TACGTGTAAGACCATGTCTGGGACATCGGCATCG-TATT-TGAT
1 T-CATGTAAGACCATGTCTGGGACAT-GGCATCGAT-TTGTGAT
* *
80739503 TCATGTAAGACCCTGACTGGGACAGTGGCATCGAT
1 TCATGTAAGACCATGTCTGGGACA-TGGCATCGAT
80739538 ATGAGATAGC
Statistics
Matches: 66, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
41 27 0.41
42 10 0.15
43 29 0.44
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (41 bp):
TCATGTAAGACCATGTCTGGGACATGGCATCGATTTGTGAT
Found at i:80740853 original size:32 final size:32
Alignment explanation
Indices: 80740808--80740872 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
80740798 TTAGTTAGAA
80740808 AAATGCTTGTCATTTATATGTGGCGTATTGGC
1 AAATGCTTGTCATTTATATGTGGCGTATTGGC
*
80740840 AAATGCTTTTCATTTATATGTGGCGTATTGGC
1 AAATGCTTGTCATTTATATGTGGCGTATTGGC
80740872 A
1 A
80740873 TATTTTGTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.42
Consensus pattern (32 bp):
AAATGCTTGTCATTTATATGTGGCGTATTGGC
Found at i:80741988 original size:27 final size:27
Alignment explanation
Indices: 80741933--80741990 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
80741923 ACCTCTTAAT
* * * *
80741933 TGATAAAATGACTGTTATGCTCATTTG
1 TGATAAAATAACTGTTACGCCCATATG
*
80741960 TGATAAAATAACTGTTACGCCCCTATG
1 TGATAAAATAACTGTTACGCCCATATG
80741987 TGAT
1 TGAT
80741991 GTATGATTGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (27 bp):
TGATAAAATAACTGTTACGCCCATATG
Found at i:80744339 original size:46 final size:46
Alignment explanation
Indices: 80744287--80744458 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
80744277 TAGGCATCCA
*
80744287 AGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
* * *
80744333 AGCTCGTTGAGTTGAGTCCAAGTTCA-TGA--GATG-TAACTAGGCATCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--CCG
*
80744380 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
* **
80744426 AGCTCGTTGAGTTGAGTTCGAGTTGGCTTATGG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80744459 GCAGGTTACA
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 57 0.54
47 28 0.26
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (46 bp):
AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
Found at i:80746838 original size:18 final size:18
Alignment explanation
Indices: 80746813--80746865 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 18
80746803 ATGAGTCAAA
80746813 TGTGAATTTAGAAATAATT
1 TGTGAA-TTAGAAATAATT
80746832 T-TGAATTAGTAAAT--TT
1 TGTGAATTAG-AAATAATT
80746848 TGTGAATTA-AAATAATT
1 TGTGAATTAGAAATAATT
80746865 T
1 T
80746866 ATTAAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
15 4 0.13
16 3 0.10
17 14 0.47
18 8 0.27
19 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (18 bp):
TGTGAATTAGAAATAATT
Found at i:80751728 original size:40 final size:40
Alignment explanation
Indices: 80751669--80751857 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
80751659 CATTGGAATG
* * * *
80751669 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
80751709 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
80751749 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
80751789 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
80751829 ATAACCGGGCTAGGTCCCGAAGACAATTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTG
80751858 AGCGAGTCGC
Statistics
Matches: 123, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 116 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:80751771 original size:80 final size:80
Alignment explanation
Indices: 80751669--80751822 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
80751659 CATTGGAATG
* * ** *
80751669 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
80751734 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
80751749 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
80751814 ATCGTGCGA
66 ATCGTGCGA
80751823 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Done.