Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 268 of 770
Found at i:80751875 original size:80 final size:80
Alignment explanation
Indices: 80751673--80751890 Score: 217
Period size: 80 Copynumber: 2.7 Consensus size: 80
80751663 GGAATGATAT
* * * *
80751673 CCGGGCTAAGTCCCGAAGGCAATT-ATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCAATTGA-GCAAGTAACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
80751737 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * *
80751753 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTGAGCAAGTAACTATATCCGGGTTAAGACCCGAAGGCAATCG
80751818 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * **
80751833 CCGGGCTAGGTCCCGAAGACAATTGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCAATTGAGCAAGTAACTATATCCGGGTTAAGA-CCCGAAGG
80751891 TACGTGATTC
Statistics
Matches: 111, Mismatches: 25, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 96 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTGAGCAAGTAACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:80753931 original size:22 final size:22
Alignment explanation
Indices: 80753892--80753934 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
80753882 TTGTGATATT
*
80753892 TACGGCCTTTAGCCATTCTGTC
1 TACGGCCTTGAGCCATTCTGTC
* *
80753914 TACGGCGTTGAGCTATTCTGT
1 TACGGCCTTGAGCCATTCTGT
80753935 TGACTTAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.26, G:0.23, T:0.37
Consensus pattern (22 bp):
TACGGCCTTGAGCCATTCTGTC
Found at i:80756852 original size:24 final size:24
Alignment explanation
Indices: 80756812--80756873 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
80756802 GATTATGTAG
80756812 AAAGAATAAAGAAATGAA-AAAAAA
1 AAAGAA-AAAGAAATGAAGAAAAAA
* *
80756836 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAGAAAAAA
*
80756861 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
80756874 AAAAAAGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 5 0.16
24 12 0.38
25 15 0.47
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAGAAAAAA
Found at i:80758071 original size:29 final size:29
Alignment explanation
Indices: 80757999--80758063 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
80757989 AGTTTGCTTT
*
80757999 CGGCACTAAGTGTGCATGCTGGAAATATA
1 CGGCACTAAGTGTGCATGCTGGAAAAATA
*
80758028 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 CGGCACTAAGTGTGCATGCTGGAAAAATA
80758057 CGGCACT
1 CGGCACT
80758064 GGGTGTGCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (29 bp):
CGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:80761557 original size:33 final size:34
Alignment explanation
Indices: 80761479--80761560 Score: 84
Period size: 33 Copynumber: 2.4 Consensus size: 34
80761469 ATGGCATGGT
*
80761479 GTGAATGTAAGACCATAGCTGGGCTTTGGCATTTCA
1 GTGAA-GTAAGACCATAACTGGGCTTTGGCA-TTCA
80761515 GTGAA--AAGACCATAACTGGG-TTGTGGCA-TC-
1 GTGAAGTAAGACCATAACTGGGCTT-TGGCATTCA
80761545 GTGAACGTAAGACCAT
1 GTGAA-GTAAGACCAT
80761561 GATTGGACCA
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
30 5 0.12
31 2 0.05
32 2 0.05
33 27 0.66
36 5 0.12
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (34 bp):
GTGAAGTAAGACCATAACTGGGCTTTGGCATTCA
Found at i:80767147 original size:40 final size:39
Alignment explanation
Indices: 80767103--80767231 Score: 111
Period size: 40 Copynumber: 3.3 Consensus size: 39
80767093 GACTCGCTCA
*
80767103 AATGCCTTCGGGAC-GAAGCCC-GGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTGAA-CCCGGGTT-TAGCAACTTGCAC
* *
80767142 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
* * * * ** *
80767182 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
80767220 GAATGCCTTCGG
1 -AATGCCTTCGG
80767232 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 21 0.27
39 22 0.29
40 28 0.36
41 6 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
Found at i:80767231 original size:78 final size:80
Alignment explanation
Indices: 80767138--80767284 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 80
80767128 ATAGCGACTT
* * *
80767138 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
80767200 CCGGATTTATTAACTC
65 CCGGATTTATTAACTC
** *
80767216 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
80767281 CGGA
66 CGGA
80767285 CATCATTCGA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
77 3 0.05
78 30 0.50
79 17 0.28
80 10 0.17
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
CGGATTTATTAACTC
Found at i:80767268 original size:40 final size:37
Alignment explanation
Indices: 80767119--80767284 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 37
80767109 TTCGGGACGA
* ** *
80767119 AGCCCGGTTATAGCGACTTGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTC-GGA-TT
* * *
80767159 AACCCGGGTTTAGTAACTTGCACAAAGCCTTCGGGATT
1 AGCCCGGATATAGTAACTTGCACAAAGCCTTC-GGATT
* * * *
80767197 AGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTCGGAT--T
* *
80767237 AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTT-GCACAAAGCCTTC-GGA-TT
80767277 AGCCCGGA
1 AGCCCGGA
80767285 CATCATTCGA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
38 25 0.25
39 20 0.20
40 49 0.48
41 7 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (37 bp):
AGCCCGGATATAGTAACTTGCACAAAGCCTTCGGATT
Found at i:80779789 original size:40 final size:40
Alignment explanation
Indices: 80779730--80779898 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
80779720 CGGGACTTTA
* * *
80779730 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
80779770 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
80779810 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
80779850 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
80779890 CCCGGATAT
1 CCCGGATAT
80779899 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:80783396 original size:21 final size:21
Alignment explanation
Indices: 80783372--80783419 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
80783362 GTCATTTTTG
80783372 CAAATTAAGCACACAAATGAT
1 CAAATTAAGCACACAAATGAT
80783393 CAAATTAAGCACACAAATGAT
1 CAAATTAAGCACACAAATGAT
80783414 CAAATT
1 CAAATT
80783420 TTCACACGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.52, C:0.19, G:0.08, T:0.21
Consensus pattern (21 bp):
CAAATTAAGCACACAAATGAT
Found at i:80785695 original size:40 final size:40
Alignment explanation
Indices: 80785630--80785914 Score: 427
Period size: 40 Copynumber: 7.2 Consensus size: 40
80785620 TCTTCGGAAT
* ** *
80785630 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
80785669 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
80785709 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
80785748 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTC-GGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
80785786 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
80785826 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
80785866 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
80785906 TTAGCCCGG
1 TTAGCCCGG
80785915 GTATCATTCA
Statistics
Matches: 227, Mismatches: 14, Indels: 9
0.91 0.06 0.04
Matches are distributed among these distances:
38 29 0.13
39 58 0.26
40 139 0.61
41 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:80785816 original size:78 final size:79
Alignment explanation
Indices: 80785630--80785914 Score: 423
Period size: 78 Copynumber: 3.6 Consensus size: 79
80785620 TCTTCGGAAT
* * * * * *
80785630 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
1 TTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
80785695 AATGCCTTCGGGTC
66 AATGCCTTCGGGTC
*
80785709 TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC-
1 TTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
80785773 AATGCCTTC-GGTC
66 AATGCCTTCGGGTC
* *
80785786 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAG-CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
80785851 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* *
80785866 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
80785915 GTATCATTCA
Statistics
Matches: 190, Mismatches: 12, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
77 8 0.04
78 68 0.36
79 66 0.35
80 47 0.25
81 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (79 bp):
TTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
AATGCCTTCGGGTC
Found at i:80785851 original size:118 final size:117
Alignment explanation
Indices: 80785630--80785914 Score: 430
Period size: 118 Copynumber: 2.4 Consensus size: 117
80785620 TCTTCGGAAT
* * * *
80785630 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
80785694 AAATGCCTTCGGGTCTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
64 AAATGCCTTCGGGTCTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
80785748 TTAGCCCGGATATAACAACTCGCACAATGCCTTC-GGTCTTAGCCCGGATATAACAACTCGCACG
1 TTAGCCCGGATATAAC-ACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
80785812 AATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
65 AATGCCTTCGGGTCTTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
80785866 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
80785915 GTATCATTCA
Statistics
Matches: 152, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
117 44 0.29
118 68 0.45
119 28 0.18
120 12 0.08
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (117 bp):
TTAGCCCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAA
ATGCCTTCGGGTCTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:80793980 original size:40 final size:40
Alignment explanation
Indices: 80793915--80794162 Score: 374
Period size: 40 Copynumber: 6.2 Consensus size: 40
80793905 TCTTCGGAAT
* ** *
80793915 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
80793954 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
80793994 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
80794034 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
80794074 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
80794114 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
80794154 TTAGCCCGG
1 TTAGCCCGG
80794163 GTATCATTCA
Statistics
Matches: 192, Mismatches: 15, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
39 3 0.02
40 188 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:80805913 original size:15 final size:15
Alignment explanation
Indices: 80805893--80805924 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
80805883 AAATGGAGAT
80805893 TATTCTTAAGTAAAA
1 TATTCTTAAGTAAAA
80805908 TATTCTTAAGTAAAA
1 TATTCTTAAGTAAAA
80805923 TA
1 TA
80805925 ATAGATATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (15 bp):
TATTCTTAAGTAAAA
Found at i:80809530 original size:40 final size:40
Alignment explanation
Indices: 80809464--80809630 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
80809454 AAATTGAATG
* * *
80809464 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
80809503 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
80809543 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80809583 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80809623 ATATCCGG
1 ATATCCGG
80809631 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80817533 original size:40 final size:40
Alignment explanation
Indices: 80817467--80817633 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
80817457 AAATTGAATG
* * *
80817467 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
80817506 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
80817546 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80817586 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80817626 ATATCCGG
1 ATATCCGG
80817634 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80819306 original size:38 final size:38
Alignment explanation
Indices: 80819255--80819530 Score: 399
Period size: 38 Copynumber: 7.3 Consensus size: 38
80819245 ATATTTGATG
*
80819255 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
80819293 TATATCCGGGTTAAATCCTGCAGGCTTTGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
80819331 TATGTCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
80819369 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
80819407 TATTTCCGGGTTAAATCCCGCAGGCCTCGTGCTAGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
80819445 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCCGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * **
80819483 TATATCCGGGTTAAATCCCGCAGGCCTAGTATTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
80819521 TATATTCGGG
1 TATATCCGGG
80819531 CCTTTGAGCC
Statistics
Matches: 210, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 210 1.00
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:80822656 original size:19 final size:19
Alignment explanation
Indices: 80822632--80822670 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
80822622 CATACGGGTT
80822632 AAAATAAAAAAAATAAAAA
1 AAAATAAAAAAAATAAAAA
* * *
80822651 AAAATATATAATATAAAAA
1 AAAATAAAAAAAATAAAAA
80822670 A
1 A
80822671 TAGGCAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (19 bp):
AAAATAAAAAAAATAAAAA
Found at i:80828912 original size:28 final size:27
Alignment explanation
Indices: 80828849--80828918 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
80828839 ATAGTGAGTC
80828849 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
80828876 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
80828904 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80828919 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:80833093 original size:40 final size:39
Alignment explanation
Indices: 80833049--80833163 Score: 115
Period size: 39 Copynumber: 2.9 Consensus size: 39
80833039 AAGTGACTAT
* *
80833049 ATCCGGACTAAGATCCGAAGGCGTTCGTGTGAGTTAATAA
1 ATCCGGACTAAG-TCCGAAGGCATTCGTGCGAGTTAATAA
* * * *
80833089 ATCC-GAGCAAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGA-CTAAGTCCGAAGGCATTCGTGCGAGTTAATAA
* **
80833128 ACCCGGGTTAAGTCTCGAAGGCATTCGTGCGAGTTA
1 ATCCGGACTAAGTC-CGAAGGCATTCGTGCGAGTTA
80833164 CTATAACCGG
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
39 31 0.52
40 29 0.48
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (39 bp):
ATCCGGACTAAGTCCGAAGGCATTCGTGCGAGTTAATAA
Found at i:80833190 original size:40 final size:40
Alignment explanation
Indices: 80833011--80833202 Score: 133
Period size: 40 Copynumber: 4.8 Consensus size: 40
80833001 TGAATGATGT
* * * * *
80833011 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAC
** * * * * *
80833051 CCGGACTAAGAT-CCGAAGGCGTTCGTGTGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAC
* **
80833091 CCGAGCAAAG-CCCGAAGGCATTTGTGCGAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAC
* *
80833130 CCGGGTTAAGTCTCGAAGGCATTCGTGCGAGTTACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAC
* * *
80833170 CCGGGCTT-TGTCCCGTAGGCATTTGAGCGAGTT
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTT
80833203 GTTATATCTG
Statistics
Matches: 121, Mismatches: 25, Indels: 12
0.77 0.16 0.08
Matches are distributed among these distances:
39 30 0.25
40 81 0.67
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAC
Found at i:80839221 original size:28 final size:27
Alignment explanation
Indices: 80839158--80839227 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
80839148 ATAGTGAGTC
80839158 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
80839185 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
80839213 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80839228 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:80848737 original size:13 final size:13
Alignment explanation
Indices: 80848719--80848749 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
80848709 ACCAGGAGAT
80848719 ACATGGCAGTGTA
1 ACATGGCAGTGTA
*
80848732 ACATGGCCGTGTA
1 ACATGGCAGTGTA
80848745 ACATG
1 ACATG
80848750 ACCGTGTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (13 bp):
ACATGGCAGTGTA
Found at i:80848754 original size:13 final size:13
Alignment explanation
Indices: 80848727--80848757 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
80848717 ATACATGGCA
*
80848727 GTGTAACATGGCC
1 GTGTAACATGACC
80848740 GTGTAACATGACC
1 GTGTAACATGACC
80848753 GTGTA
1 GTGTA
80848758 TCACACATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (13 bp):
GTGTAACATGACC
Found at i:80850423 original size:23 final size:23
Alignment explanation
Indices: 80850379--80850501 Score: 88
Period size: 24 Copynumber: 5.1 Consensus size: 23
80850369 CTTTCTTGAT
*
80850379 CTGAAACGGTAAGCTC-TGACGAG
1 CTGAAACAGTAAGCTCAT-ACGAG
80850402 CTGAAACAGTAAGCTCATACGAG
1 CTGAAACAGTAAGCTCATACGAG
* **
80850425 TTGAGAACAACAAGCTCCA-ACGAG
1 CTGA-AACAGTAAGCT-CATACGAG
* * *
80850449 TTGGAAACAGTAAGCTCTTACGAA
1 CT-GAAACAGTAAGCTCATACGAG
* *
80850473 CTGATATATCAATAAGCTCATTCGAG
1 CTGA-A-A-CAGTAAGCTCATACGAG
80850499 CTG
1 CTG
80850502 CAGTGAGTCT
Statistics
Matches: 79, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
23 26 0.33
24 32 0.41
25 5 0.06
26 16 0.20
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (23 bp):
CTGAAACAGTAAGCTCATACGAG
Found at i:80850471 original size:24 final size:23
Alignment explanation
Indices: 80850380--80850471 Score: 94
Period size: 24 Copynumber: 3.9 Consensus size: 23
80850370 TTTCTTGATC
* * *
80850380 TGAAACGGTAAGCTCTGACGAGC
1 TGAAACAGTAAGCTCTTACGAGT
*
80850403 TGAAACAGTAAGCTCATACGAGT
1 TGAAACAGTAAGCTCTTACGAGT
** **
80850426 TGAGAACAACAAGCTCCAACGAGT
1 TGA-AACAGTAAGCTCTTACGAGT
80850450 TGGAAACAGTAAGCTCTTACGA
1 T-GAAACAGTAAGCTCTTACGA
80850472 ACTGATATAT
Statistics
Matches: 55, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
23 22 0.40
24 31 0.56
25 2 0.04
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (23 bp):
TGAAACAGTAAGCTCTTACGAGT
Found at i:80852572 original size:27 final size:25
Alignment explanation
Indices: 80852528--80852785 Score: 187
Period size: 27 Copynumber: 9.7 Consensus size: 25
80852518 TTAGTTTACC
* * *
80852528 AAATTACTAAAATACCCCTAGTTGTA
1 AAATTAC-CAAATACCCCGATTTGTA
* *
80852554 AAATTACCAAAGTATCCCCGGTTTATA
1 AAATTACCAAA-TA-CCCCGATTTGTA
*
80852581 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTA-CCAAATA-CCCCGATTTGTA
*
80852608 AAATTACCGAAATACCGTCGA-TTGTA
1 AAATTACC-AAATACC-CCGATTTGTA
*
80852634 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTAC-CAAATACCC-CGATTTGTA
** *
80852661 AAATTAGTGAAATACCCTCGACTTGTA
1 AAATTA-CCAAATACCC-CGATTTGTA
*
80852688 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAA-TA-CCCCGATTTGTA
*
80852715 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTA-CCAAATA-CCCCGATTTGTA
* *
80852742 AAATTATCGAAATACCGTCGA-TTGTA
1 AAATTA-CCAAATACC-CCGATTTGTA
* *
80852768 GAATTACTAAAATACCCC
1 AAATTAC-CAAATACCCC
80852786 TGTAGGGTAG
Statistics
Matches: 194, Mismatches: 24, Indels: 29
0.79 0.10 0.12
Matches are distributed among these distances:
25 5 0.03
26 57 0.29
27 119 0.61
28 13 0.07
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (25 bp):
AAATTACCAAATACCCCGATTTGTA
Found at i:80852711 original size:54 final size:52
Alignment explanation
Indices: 80852549--80852784 Score: 226
Period size: 54 Copynumber: 4.4 Consensus size: 52
80852539 ATACCCCTAG
* * *
80852549 TTGTAAAATTACC-AAAGTATCCC-CGGTTTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTACCGAAA-TA-CCCTC-GATTGTAAAATTA-CCAAATACCCTCGAT
* *
80852603 TTGTAAAATTACCGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCGAT
1 TTGTAAAATTACCGAAATACCCTCGATTGTAAAATTAC-CAAATACCCTCGAT
** *
80852656 TTGTAAAATTAGTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCGAAATACCCTCGA-TTGTAAAATTACCAAA-TACCCTCGAT
* * * * *
80852710 TTATAAAATTACCCAAATATCCTCGATTTGTAAAATTATCGAAATACCGTCGA-
1 TTGTAAAATTACCGAAATACCCTCGA-TTGTAAAATTA-CCAAATACCCTCGAT
* **
80852763 TTGTAGAATTACTAAAATACCC
1 TTGTAAAATTACCGAAATACCC
80852785 CTGTAGGGTA
Statistics
Matches: 152, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
52 1 0.01
53 68 0.45
54 76 0.50
55 7 0.05
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (52 bp):
TTGTAAAATTACCGAAATACCCTCGATTGTAAAATTACCAAATACCCTCGAT
Found at i:80852800 original size:134 final size:134
Alignment explanation
Indices: 80852549--80852811 Score: 413
Period size: 134 Copynumber: 2.0 Consensus size: 134
80852539 ATACCCCTAG
* *
80852549 TTGTAAAATTACCAAAGTATCCCCGGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTA
1 TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTA
* **
80852614 CCGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTAGTGAAATACCCT
66 CCGAAATACCGTCGATTGTAAAATTACTAAAATACCCTCGATGGGTAAAATTAGTGAAATACCCT
80852679 CGAC
131 CGAC
80852683 TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTA
1 TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTA
* * * *
80852748 TCGAAATACCGTCGATTGTAGAATTACTAAAATACCC-CTG-TAGGGTAGAATTATTGAAATACC
66 CCGAAATACCGTCGATTGTAAAATTACTAAAATACCCTC-GAT-GGGTAAAATTAGTGAAATACC
80852811 C
129 C
80852812 CTATAGGGTA
Statistics
Matches: 118, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
133 2 0.02
134 116 0.98
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (134 bp):
TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTA
CCGAAATACCGTCGATTGTAAAATTACTAAAATACCCTCGATGGGTAAAATTAGTGAAATACCCT
CGAC
Found at i:80853206 original size:27 final size:27
Alignment explanation
Indices: 80852765--80853205 Score: 589
Period size: 27 Copynumber: 16.4 Consensus size: 27
80852755 ACCGTCGATT
*
80852765 GTAGAATTACTAAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
80852792 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
80852819 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
80852846 GTAGAATTACTGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * *
80852873 GTAGAATTACTAAAATACCCATATAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
80852900 GTAGAATTA-TCGAAATA-CCCTATAGG
1 GTAGAATTACT-GAAATACCCCTGTAGG
* *
80852926 GTAGAATTACTGAAATACCCCTATAGA
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
80852953 GTAGAATTACTAAAATACCCCTATAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
80852980 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
80853007 GTAGAATTACTAAAATACCCCTGTCGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * * *
80853034 GTAGAAGTATTGAAATACTCCTGTAAG
1 GTAGAATTACTGAAATACCCCTGTAGG
80853061 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
80853088 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
80853115 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
80853142 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * * * *
80853169 GTAGAACTACCGAGATACCCTTGTGGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
80853196 GTAAAATTAC
1 GTAGAATTAC
80853206 CATTTTGCCC
Statistics
Matches: 366, Mismatches: 45, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
26 24 0.07
27 342 0.93
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCCTGTAGG
Found at i:80853646 original size:22 final size:21
Alignment explanation
Indices: 80853597--80853658 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
80853587 AATTATTCTA
* *
80853597 ATTATGGCTTTGCGCCAACCT
1 ATTATGGCTCTGTGCCAACCT
*
80853618 ACATATGGCTCTGTGCCAACCT
1 A-TTATGGCTCTGTGCCAACCT
*
80853640 GATTATGGCTGTGTGCCAA
1 -ATTATGGCTCTGTGCCAA
80853659 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.31
Consensus pattern (21 bp):
ATTATGGCTCTGTGCCAACCT
Found at i:80853847 original size:27 final size:27
Alignment explanation
Indices: 80853817--80853924 Score: 87
Period size: 27 Copynumber: 4.0 Consensus size: 27
80853807 ATTCTGTTAA
* * *
80853817 GTGGCTTTGCCAC-ATTATCTGTTTTTG
1 GTGGCTATGCCACAAATATCTG-TTCTG
80853844 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCACAAATATCTGTTCTG
* * *
80853871 GTGGCTCTGCCA-TAATATTTGTATCTG
1 GTGGCTATGCCACAAATATCTGT-TCTG
* * **
80853898 GTGACTCTATCAC-AATATCTGTTCTG
1 GTGGCTATGCCACAAATATCTGTTCTG
80853924 G
1 G
80853925 CAGCCATGCT
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 13 0.19
27 48 0.71
28 7 0.10
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (27 bp):
GTGGCTATGCCACAAATATCTGTTCTG
Found at i:80854051 original size:6 final size:6
Alignment explanation
Indices: 80854042--80854095 Score: 56
Period size: 6 Copynumber: 8.8 Consensus size: 6
80854032 TTGCATTCAC
* * *
80854042 ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
80854091 ATTCT
1 ATTCT
80854096 AGTTCGGATA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
5 1 0.03
6 34 0.87
7 3 0.08
8 1 0.03
ACGTcount: A:0.17, C:0.20, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:80867041 original size:21 final size:20
Alignment explanation
Indices: 80867013--80867051 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
80867003 ATGTGTATTT
*
80867013 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTCGATAGATTA
*
80867033 TGAATGTTTGTCGATAGAT
1 TGAA-GTTTCTCGATAGAT
80867052 ATCTATGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.44
Consensus pattern (20 bp):
TGAAGTTTCTCGATAGATTA
Found at i:80870002 original size:27 final size:27
Alignment explanation
Indices: 80869976--80870147 Score: 229
Period size: 27 Copynumber: 6.4 Consensus size: 27
80869966 TTCAAAAAAA
* * ** *
80869976 TGACTATTTTTCCCTTATAAGGTAAAA
1 TGACTATTTTGCCCTTGTGGGGTAAAT
* *
80870003 TGACTATTTTACCCTTATGGGGTAAGA-
1 TGACTATTTTGCCCTTGTGGGGTAA-AT
*
80870030 TGACTGTTTTGCCCTTGTGGGGTAAAT
1 TGACTATTTTGCCCTTGTGGGGTAAAT
80870057 TGACTATTTTGCCCTTGTGGGGTAAAT
1 TGACTATTTTGCCCTTGTGGGGTAAAT
*
80870084 TGACTGTTTTGCCCTTGTGGGGTAAAT
1 TGACTATTTTGCCCTTGTGGGGTAAAT
* *
80870111 TGACTGTTTTGCCCTTGTAGGGTAAAT
1 TGACTATTTTGCCCTTGTGGGGTAAAT
80870138 TGACTATTTT
1 TGACTATTTT
80870148 TCCTTTTTAT
Statistics
Matches: 133, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
26 1 0.01
27 131 0.98
28 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.41
Consensus pattern (27 bp):
TGACTATTTTGCCCTTGTGGGGTAAAT
Found at i:80870115 original size:81 final size:81
Alignment explanation
Indices: 80869976--80870183 Score: 247
Period size: 81 Copynumber: 2.6 Consensus size: 81
80869966 TTCAAAAAAA
*
80869976 TGACTATTTTTCCCTTATAAGGTAAAATGACTATTTTACCCTTATGGGGTAAGATGACTGTTTTG
1 TGACTATTTTGCCCTTATAAGGTAAAATGACTATTTTACCCTTATGGGGTAAGATGACTGTTTTG
*
80870041 CCCTTGTGGGGTAAAT
66 CCCTTGTAGGGTAAAT
* ** * * * *
80870057 TGACTATTTTGCCCTTGTGGGGTAAATTGACTGTTTTGCCCTTGTGGGGTAA-ATTGACTGTTTT
1 TGACTATTTTGCCCTTATAAGGTAAAATGACTATTTTACCCTTATGGGGTAAGA-TGACTGTTTT
80870121 GCCCTTGTAGGGTAAAT
65 GCCCTTGTAGGGTAAAT
* * * * * * * *
80870138 TGACTATTTTTCCTTTTTATGGTAAGATAACTGTTTTACCCCTATG
1 TGACTATTTTGCCCTTATAAGGTAAAATGACTATTTTACCCTTATG
80870184 TGATGTATGT
Statistics
Matches: 106, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
80 1 0.01
81 105 0.99
ACGTcount: A:0.21, C:0.15, G:0.22, T:0.42
Consensus pattern (81 bp):
TGACTATTTTGCCCTTATAAGGTAAAATGACTATTTTACCCTTATGGGGTAAGATGACTGTTTTG
CCCTTGTAGGGTAAAT
Found at i:80870171 original size:54 final size:54
Alignment explanation
Indices: 80869976--80870174 Score: 177
Period size: 54 Copynumber: 3.7 Consensus size: 54
80869966 TTCAAAAAAA
* * * * * * * * *
80869976 TGACTATTTTTCCCTTATAAGGTAAAATGACTATTTTACCCTTATGGGGTAAGA-
1 TGACTATTTTGCCCTTGTAGGGTAAATTAACTGTTTTGCCCTTGTAGGGTAA-AT
* * * * *
80870030 TGACTGTTTTGCCCTTGTGGGGTAAATTGACTATTTTGCCCTTGTGGGGTAAAT
1 TGACTATTTTGCCCTTGTAGGGTAAATTAACTGTTTTGCCCTTGTAGGGTAAAT
* * *
80870084 TGACTGTTTTGCCCTTGTGGGGTAAATTGACTGTTTTGCCCTTGTAGGGTAAAT
1 TGACTATTTTGCCCTTGTAGGGTAAATTAACTGTTTTGCCCTTGTAGGGTAAAT
* * * *
80870138 TGACTATTTTTCCTTTTTATGGTAAGA-TAACTGTTTT
1 TGACTATTTTGCCCTTGTAGGGTAA-ATTAACTGTTTT
80870175 ACCCCTATGT
Statistics
Matches: 126, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 124 0.98
55 1 0.01
ACGTcount: A:0.21, C:0.14, G:0.22, T:0.43
Consensus pattern (54 bp):
TGACTATTTTGCCCTTGTAGGGTAAATTAACTGTTTTGCCCTTGTAGGGTAAAT
Found at i:80870480 original size:11 final size:12
Alignment explanation
Indices: 80870463--80870508 Score: 51
Period size: 11 Copynumber: 3.9 Consensus size: 12
80870453 TGCATATTGT
80870463 TTACTGTTACTG
1 TTACTGTTACTG
*
80870475 -TACTGTTTATTG
1 TTACTG-TTACTG
*
80870487 TTACTG-CACTG
1 TTACTGTTACTG
80870498 TTACTGTTACT
1 TTACTGTTACT
80870509 ACATTGTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
11 14 0.52
12 8 0.30
13 5 0.19
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.50
Consensus pattern (12 bp):
TTACTGTTACTG
Found at i:80870483 original size:18 final size:18
Alignment explanation
Indices: 80870460--80870529 Score: 97
Period size: 18 Copynumber: 3.9 Consensus size: 18
80870450 ACTTGCATAT
*
80870460 TGTTTACTGTTACTGTAC
1 TGTTTACTGTTACTGCAC
*
80870478 TGTTTATTGTTACTGCAC
1 TGTTTACTGTTACTGCAC
* *
80870496 TG-TTACTGTTACTACAT
1 TGTTTACTGTTACTGCAC
80870513 TGTTTACTGTTACTGCA
1 TGTTTACTGTTACTGCA
80870530 ATGGGCCAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
17 14 0.31
18 31 0.69
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.49
Consensus pattern (18 bp):
TGTTTACTGTTACTGCAC
Found at i:80870517 original size:35 final size:35
Alignment explanation
Indices: 80870463--80870529 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
80870453 TGCATATTGT
** *
80870463 TTACTGTTACTGTACTGTTTATTGTTACTGCACTG
1 TTACTGTTACTACACTGTTTACTGTTACTGCACTG
*
80870498 TTACTGTTACTACATTGTTTACTGTTACTGCA
1 TTACTGTTACTACACTGTTTACTGTTACTGCA
80870530 ATGGGCCAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (35 bp):
TTACTGTTACTACACTGTTTACTGTTACTGCACTG
Found at i:80870527 original size:6 final size:6
Alignment explanation
Indices: 80870463--80870508 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
80870453 TGCATATTGT
* *
80870463 TTACTG TTACTG -TACTG TTTATTG TTACTG -CACTG TTACTG TTACT
1 TTACTG TTACTG TTACTG -TTACTG TTACTG TTACTG TTACTG TTACT
80870509 ACATTGTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
5 9 0.27
6 20 0.61
7 4 0.12
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.50
Consensus pattern (6 bp):
TTACTG
Found at i:80873891 original size:28 final size:27
Alignment explanation
Indices: 80873731--80873902 Score: 179
Period size: 27 Copynumber: 6.4 Consensus size: 27
80873721 CATATTCGAG
* *
80873731 AAAATGACT-TTTTTACCCTTATAGGCT
1 AAAATGACTATTTTT-CCCTTATGGGGT
* *
80873758 -AAA-CACTGTTTTTCCCTTATGGGGT
1 AAAATGACTATTTTTCCCTTATGGGGT
* * *
80873783 AAAATGATTGTTTTTCCCTTATAGGGT
1 AAAATGACTATTTTTCCCTTATGGGGT
* **
80873810 AAAATGACTATTTTGCCCTTATGATGT
1 AAAATGACTATTTTTCCCTTATGGGGT
* * *
80873837 AAAATAACTATTTTGCCCTTATAGGGT
1 AAAATGACTATTTTTCCCTTATGGGGT
*
80873864 AAAATAACTATTTTTCCCTTTATGGGGT
1 AAAATGACTATTTTTCCC-TTATGGGGT
80873892 AAAATGACTAT
1 AAAATGACTAT
80873903 AAAATGACTG
Statistics
Matches: 122, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
25 13 0.11
26 11 0.09
27 80 0.66
28 18 0.15
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (27 bp):
AAAATGACTATTTTTCCCTTATGGGGT
Found at i:80874292 original size:18 final size:18
Alignment explanation
Indices: 80874269--80874333 Score: 87
Period size: 18 Copynumber: 3.7 Consensus size: 18
80874259 TTGCATACTG
*
80874269 TTTACTGTTACTACACTA
1 TTTACTATTACTACACTA
*
80874287 TTTACTATTACTGCACTA
1 TTTACTATTACTACACTA
*
80874305 -TTACTATTACTACACTG
1 TTTACTATTACTACACTA
*
80874322 TTTACTGTTACT
1 TTTACTATTACT
80874334 GTAATGGGCC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
17 15 0.37
18 26 0.63
ACGTcount: A:0.26, C:0.22, G:0.06, T:0.46
Consensus pattern (18 bp):
TTTACTATTACTACACTA
Found at i:80879100 original size:43 final size:44
Alignment explanation
Indices: 80879004--80879116 Score: 108
Period size: 43 Copynumber: 2.6 Consensus size: 44
80878994 CATTGACAAC
* * * *
80879004 TATCTGATATATCGTATAAGACCGTGTCTGGGACACTGGCTTCGA
1 TATCTGATTTA-CGTATAAGACCATGTCTGGGACACTGACATCGA
**
80879049 T-TGAGATTTACGTATAAGACCATGTCTGGGACA-TCGACATC-A
1 TATCTGATTTACGTATAAGACCATGTCTGGGACACT-GACATCGA
* *
80879091 TATCTGATTT-TGTATAAGACCCTGTC
1 TATCTGATTTACGTATAAGACCATGTC
80879117 CGAGACAGAG
Statistics
Matches: 56, Mismatches: 10, Indels: 7
0.77 0.14 0.10
Matches are distributed among these distances:
42 17 0.30
43 32 0.57
44 6 0.11
45 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (44 bp):
TATCTGATTTACGTATAAGACCATGTCTGGGACACTGACATCGA
Found at i:80881899 original size:71 final size:71
Alignment explanation
Indices: 80881815--80881978 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
80881805 CGATTTGTCT
*
80881815 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
80881880 CTTTCA
66 CTTTCA
80881886 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
80881951 CTTTCA
66 CTTTCA
80881957 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
80881979 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:80882016 original size:71 final size:70
Alignment explanation
Indices: 80881815--80882012 Score: 240
Period size: 71 Copynumber: 2.8 Consensus size: 70
80881805 CGATTTGTCT
* * * * *
80881815 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCCAGCTACATTTAT
80881880 CTTTCA
65 CTTTCA
* * * *
80881886 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCCAGCTACATTTAT
80881951 CTTTCA
65 CTTTCA
* * *
80881957 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCCAGCTAC
80882013 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 21 0.18
69 1 0.01
70 1 0.01
71 95 0.81
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCCAGCTACATTTATC
TTTCA
Found at i:80891035 original size:12 final size:12
Alignment explanation
Indices: 80891018--80891048 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
80891008 CGAATGCCTT
80891018 CGGGTCTTAGCC
1 CGGGTCTTAGCC
80891030 CGGGTCTTAGCC
1 CGGGTCTTAGCC
80891042 CGGGTCT
1 CGGGTCT
80891049 GTAGTAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.32, G:0.35, T:0.26
Consensus pattern (12 bp):
CGGGTCTTAGCC
Found at i:80901297 original size:39 final size:39
Alignment explanation
Indices: 80901215--80901377 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
80901205 TATGGTAACC
* * *
80901215 CGCACAAATGCCTTCAGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTC-GGGCTTAGCCCGGATATCACAACT
* * *
80901255 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
80901294 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
80901333 CGCACAATTGCCTTCGGGCTTAGCCCGGACATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
80901372 CGCACA
1 CGCACA
80901378 TTCATACACA
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 96 0.87
40 14 0.13
ACGTcount: A:0.25, C:0.34, G:0.19, T:0.22
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:80906419 original size:48 final size:48
Alignment explanation
Indices: 80906361--80906560 Score: 328
Period size: 48 Copynumber: 4.2 Consensus size: 48
80906351 TGTTACAACA
80906361 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
80906409 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACTCATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
** * *
80906457 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
80906505 TTCACATTAGCCCTTCGGTTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
80906553 TTCACATT
1 TTCACATT
80906561 CATCACATCG
Statistics
Matches: 139, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 139 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:80906661 original size:49 final size:49
Alignment explanation
Indices: 80906552--80906900 Score: 630
Period size: 49 Copynumber: 7.2 Consensus size: 49
80906542 CACACATATA
*
80906552 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
80906599 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
80906648 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
80906697 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
80906746 TTTCACATTCACCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
80906795 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
80906844 TTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
80906893 TTTCACAT
1 TTTCACAT
80906901 ATTTCATATT
Statistics
Matches: 292, Mismatches: 8, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
47 36 0.12
49 256 0.88
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:80915790 original size:40 final size:40
Alignment explanation
Indices: 80915682--80915891 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80915672 CGGGATTTAA
* * * * *
80915682 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80915722 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80915762 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80915802 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80915842 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80915882 CCGGATATAT
1 CCGGATATAT
80915892 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80923918 original size:40 final size:40
Alignment explanation
Indices: 80923810--80924019 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80923800 CGGGATTTAA
* * * * *
80923810 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80923850 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80923890 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80923930 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80923970 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80924010 CCGGATATAT
1 CCGGATATAT
80924020 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80927775 original size:79 final size:81
Alignment explanation
Indices: 80927639--80927821 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
80927629 TCGAATGATG
* *
80927639 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
80927703 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
80927718 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
80927780 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
80927798 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
80927822 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:80927837 original size:40 final size:40
Alignment explanation
Indices: 80927640--80927823 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
80927630 CGAATGATGT
* * * *
80927640 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
80927680 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
80927720 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80927758 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80927799 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
80927824 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:80927845 original size:79 final size:79
Alignment explanation
Indices: 80927692--80927846 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
80927682 GGACTAAGAT
* **
80927692 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
80927757 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
80927771 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
80927834 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
80927847 ATTCTGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:80931170 original size:47 final size:47
Alignment explanation
Indices: 80931119--80931310 Score: 312
Period size: 47 Copynumber: 4.1 Consensus size: 47
80931109 TTTAGGATTA
* *
80931119 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
80931166 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
80931213 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
80931260 AATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
80931307 AATG
1 AATG
80931311 CGAAATGTGT
Statistics
Matches: 138, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 138 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:80931346 original size:46 final size:46
Alignment explanation
Indices: 80931284--80931390 Score: 178
Period size: 46 Copynumber: 2.3 Consensus size: 46
80931274 GAACATGTAT
* *
80931284 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATAG
* *
80931330 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATAG
80931376 ATATGTGGTAAAGCC
1 ATATGTGGTAAAGCC
80931391 AAATTGTAAC
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 56 1.00
ACGTcount: A:0.34, C:0.10, G:0.32, T:0.24
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATAG
Found at i:80933003 original size:40 final size:40
Alignment explanation
Indices: 80932778--80933003 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
80932768 ACTACTCGTT
* *
80932778 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
80932818 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
80932858 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
80932898 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGAA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
* * * *
80932939 CAAA-GCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
80932979 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80933004 CATCATTCGA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 154 0.91
41 12 0.07
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:80934988 original size:37 final size:37
Alignment explanation
Indices: 80934938--80935008 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
80934928 GGAAATATAT
* *
80934938 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATAACTACATGTGGAGATTATG
*
80934975 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATAACTACATGTGGAGATT
80935009 TCGTCTGAGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACATGTGGAGATTATG
Found at i:80944346 original size:18 final size:19
Alignment explanation
Indices: 80944323--80944358 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
80944313 TTTTTTAAAA
80944323 ATAAAT-CTTTGAATTTTT
1 ATAAATACTTTGAATTTTT
*
80944341 ATAAATATTTTGAATTTT
1 ATAAATACTTTGAATTTT
80944359 AAAATTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.56
Consensus pattern (19 bp):
ATAAATACTTTGAATTTTT
Found at i:80950682 original size:202 final size:201
Alignment explanation
Indices: 80950344--80950717 Score: 597
Period size: 202 Copynumber: 1.9 Consensus size: 201
80950334 CCATTCCCAT
*
80950344 TGTACGTTTAGGGCCTCATAGGCTCCTGTTAGGGACAAATTGATTGAAATTGAATGATGAATGCA
1 TGTACGTTTAGGGCCTCATAGGCTCCTATTAGGGACAAATTGATTGAAATTGAATGATGAATGCA
*
80950409 TGAATTGAAAAAATGCATGATAAATGAATGTTTAATTGTTTTATAAGTTTGTTAATGCTCTATAA
66 TGAATTGAAAAAATGCATGATAAATGAATGTTTAATTGTTTTATAAGTTCGTTAATGCTCTATAA
80950474 CCCTATTTCAGCATTGAATACAGGTGAGGGGTGTTTCATTTATTTTATTGATTAGGTCTCGAACC
131 CCCTATTTCAGCATTGAATA-AGG-GAGGGGTGTTTCATTTATTTTATTGATTAGGTCTCGAACC
80950539 ACTCTTAA
194 ACTCTTAA
* * * * *
80950547 TGTATGTTTAGGGCCTCGTAGGCTCGTATTAGGGAGAAATTGATTGAGATTGAATGATG-ATGCA
1 TGTACGTTTAGGGCCTCATAGGCTCCTATTAGGGACAAATTGATTGAAATTGAATGATGAATGCA
* * * *
80950611 TGAATTGAGAAAATGTATGATAAATGAATGTTTAATTGTTTTATAAGTTCGTTAATTCTCTGTAA
66 TGAATTGAAAAAATGCATGATAAATGAATGTTTAATTGTTTTATAAGTTCGTTAATGCTCTATAA
* * *
80950676 CCCTATTTCAGCGTTGAATATGGGTGGGGTGTTTCATTTATT
131 CCCTATTTCAGCATTGAATAAGGGAGGGGTGTTTCATTTATT
80950718 GGTATTAGAG
Statistics
Matches: 157, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
200 18 0.11
201 2 0.01
202 84 0.54
203 53 0.34
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (201 bp):
TGTACGTTTAGGGCCTCATAGGCTCCTATTAGGGACAAATTGATTGAAATTGAATGATGAATGCA
TGAATTGAAAAAATGCATGATAAATGAATGTTTAATTGTTTTATAAGTTCGTTAATGCTCTATAA
CCCTATTTCAGCATTGAATAAGGGAGGGGTGTTTCATTTATTTTATTGATTAGGTCTCGAACCAC
TCTTAA
Found at i:80953084 original size:27 final size:27
Alignment explanation
Indices: 80953050--80953210 Score: 137
Period size: 27 Copynumber: 6.0 Consensus size: 27
80953040 CATCACATAG
*
80953050 GGGCAAAACAGTTATCCTT-CCATATAA
1 GGGCAAAACAGTCAT-CTTACCATATAA
* * *
80953077 GGGCAAAATAGTCATTTTACCTTATAA
1 GGGCAAAACAGTCATCTTACCATATAA
* *
80953104 GGGCAAAATCA-TCATTTTACCACATAA
1 GGGCAAAA-CAGTCATCTTACCATATAA
* * * *
80953131 GGGCAAAACTGTCATTTTGCCACATAA
1 GGGCAAAACAGTCATCTTACCATATAA
** * * *
80953158 GGGCAAATTAGTCATTTTGCCACATAA
1 GGGCAAAACAGTCATCTTACCATATAA
* *
80953185 GGGCAAAACAGTCATTTTACCTTATA
1 GGGCAAAACAGTCATCTTACCATATA
80953211 GGGATATTAC
Statistics
Matches: 114, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
26 3 0.03
27 110 0.96
28 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (27 bp):
GGGCAAAACAGTCATCTTACCATATAA
Found at i:80953131 original size:54 final size:54
Alignment explanation
Indices: 80953073--80953232 Score: 193
Period size: 54 Copynumber: 3.0 Consensus size: 54
80953063 ATCCTTCCAT
80953073 ATAAGGGCAAAATAGTCATTTTACCTTATAAGGGCAAAATCA-TCATTTTACCAC
1 ATAAGGGCAAAATAGTCATTTTACCTTATAAGGGC-AAATCAGTCATTTTACCAC
* ** * *
80953127 ATAAGGGCAAAACT-GTCATTTTGCCACATAAGGGCAAATTAGTCATTTTGCCAC
1 ATAAGGGCAAAA-TAGTCATTTTACCTTATAAGGGCAAATCAGTCATTTTACCAC
* *
80953181 ATAAGGGCAAAACAGTCATTTTACCTTAT-AGGG-ATATTACAGTCATTTTACC
1 ATAAGGGCAAAATAGTCATTTTACCTTATAAGGGCA-AAT-CAGTCATTTTACC
80953233 CTATGAGGGT
Statistics
Matches: 89, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
52 1 0.01
53 11 0.12
54 76 0.85
55 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.30
Consensus pattern (54 bp):
ATAAGGGCAAAATAGTCATTTTACCTTATAAGGGCAAATCAGTCATTTTACCAC
Found at i:80953222 original size:27 final size:26
Alignment explanation
Indices: 80953193--80953437 Score: 294
Period size: 27 Copynumber: 9.2 Consensus size: 26
80953183 AAGGGCAAAA
* *
80953193 CAGTCATTTTACCTTATAGGGATATTA
1 CAGTCATTTTACCCTATAGGG-TATTT
80953220 CAGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTAT-AGGGTATTT
*
80953247 CAGTCATTTTACCCTATGGGGTATTT
1 CAGTCATTTTACCCTATAGGGTATTT
* * *
80953273 CGGTCATTTTATCCTATGGGGGTATTT
1 CAGTCATTTTACCCTAT-AGGGTATTT
*
80953300 C-GATCATTTTACCCTATGGGGTATTT
1 CAG-TCATTTTACCCTATAGGGTATTT
* *
80953326 CGGCCATTTTACCCTATAAGGGTATTT
1 CAGTCATTTTACCCTAT-AGGGTATTT
80953353 CAGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTAT-AGGGTATTT
* * *
80953380 CGGTCATTTTACCTTATGGGTGTATTT
1 CAGTCATTTTACCCTATAGG-GTATTT
*
80953407 CGGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTAT-AGGGTATTT
80953434 CAGT
1 CAGT
80953438 TATTATTTCG
Statistics
Matches: 194, Mismatches: 17, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
26 49 0.25
27 139 0.72
28 6 0.03
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (26 bp):
CAGTCATTTTACCCTATAGGGTATTT
Found at i:80953229 original size:81 final size:81
Alignment explanation
Indices: 80953043--80953205 Score: 213
Period size: 81 Copynumber: 2.0 Consensus size: 81
80953033 AAACATACAT
* * * * **
80953043 CACATAGGGGCAAAACAGTTATCCTT-CCATATAAGGGCAAAATAGTCATTTTACCTTATAAGGG
1 CACATAAGGGCAAAACAGTCAT-TTTGCCACATAAGGGCAAAATAGTCATTTTACCACATAAGGG
80953107 CAAAATCATCATTTTAC
65 CAAAATCATCATTTTAC
* * *
80953124 CACATAAGGGCAAAACTGTCATTTTGCCACATAAGGGCAAATTAGTCATTTTGCCACATAAGGGC
1 CACATAAGGGCAAAACAGTCATTTTGCCACATAAGGGCAAAATAGTCATTTTACCACATAAGGGC
80953189 AAAA-CAGTCATTTTAC
66 AAAATCA-TCATTTTAC
80953205 C
1 C
80953206 TTATAGGGAT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
80 4 0.06
81 67 0.94
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (81 bp):
CACATAAGGGCAAAACAGTCATTTTGCCACATAAGGGCAAAATAGTCATTTTACCACATAAGGGC
AAAATCATCATTTTAC
Found at i:80953289 original size:53 final size:53
Alignment explanation
Indices: 80953193--80953434 Score: 335
Period size: 53 Copynumber: 4.5 Consensus size: 53
80953183 AAGGGCAAAA
* * * *
80953193 CAGTCATTTTACCTTATAGGGATATTACAGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGAGGGTATTT
* *
80953247 CAGTCATTTTACCCTATGGGGTATTTCGGTCATTTTATCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTT
* *
80953300 C-GATCATTTTACCCTATGGGGTATTTCGGCCATTTTACCCTATAAGGGTATTT
1 CAG-TCATTTTACCCTATGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTT
*
80953353 CAGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCTTATG-GGTGTATTT
1 CAGTCATTTTACCCTATG-GGGTATTTCGGTCATTTTACCCTATGAGG-GTATTT
*
80953407 CGGTCATTTTACCCTATGAGGGTATTTC
1 CAGTCATTTTACCCTATG-GGGTATTTC
80953435 AGTTATTATT
Statistics
Matches: 170, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 96 0.56
54 73 0.43
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (53 bp):
CAGTCATTTTACCCTATGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTT
Found at i:80953313 original size:80 final size:79
Alignment explanation
Indices: 80953193--80953437 Score: 332
Period size: 80 Copynumber: 3.1 Consensus size: 79
80953183 AAGGGCAAAA
* * *
80953193 CAGTCATTTTACCTTAT-AGGGATATTAC-AGTCATTTTACCCTATGAGGGTATTTCAGTCATTT
1 CAGTCATTTTACCCTATGAGGG-TATTTCGA-TCATTTTACCCTATG-GGGTATTTCGGTCATTT
80953256 TACCCTATGGGGTATTT
63 TACCCTATGGGGTATTT
* * * *
80953273 CGGTCATTTTATCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGTATTTCGGCCATTTTAC
1 CAGTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGTATTTCGGTCATTTTAC
*
80953338 CCTATAAGGGTATTT
66 CCTAT-GGGGTATTT
* *
80953353 CAGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCTTATGGGTGTATTTCGGTCATTTTA
1 CAGTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGG-GTATTTCGGTCATTTTA
80953418 CCCTATGAGGGTATTT
65 CCCTATG-GGGTATTT
80953434 CAGT
1 CAGT
80953438 TATTATTTCG
Statistics
Matches: 145, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
79 23 0.16
80 84 0.58
81 38 0.26
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (79 bp):
CAGTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGTATTTCGGTCATTTTAC
CCTATGGGGTATTT
Found at i:80956652 original size:30 final size:30
Alignment explanation
Indices: 80956616--80956677 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
80956606 TGCTTTCTCT
80956616 CATCAATTCCGACCAGTTACAGAACCCAAG
1 CATCAATTCCGACCAGTTACAGAACCCAAG
*
80956646 CATCAATTCTGACCAGTTACAGAACCCAAG
1 CATCAATTCCGACCAGTTACAGAACCCAAG
80956676 CA
1 CA
80956678 ATCACTTTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (30 bp):
CATCAATTCCGACCAGTTACAGAACCCAAG
Found at i:80958856 original size:141 final size:141
Alignment explanation
Indices: 80958624--80958883 Score: 376
Period size: 141 Copynumber: 1.8 Consensus size: 141
80958614 TGCCTTGGCG
* * * *
80958624 GTGGTTGAAACTGACTTGGGTTACACAGCTTACCACACGCCCATGTGTCTAGCCCGTGTACACTT
1 GTGGTTGAAACTGACTTGGGTCACACAGCTAACCACACGCCCATGTGTCTAGCCCATGCACACTT
*
80958689 CGAAATGGCCACACACGCCCACGTGTCAAGGCTGTGTATCTCACACAACCACCAGACATGCTCAT
66 CGAAATGGCCACACACGCCCACGTGTCAAGGCTGTGTACCTCACACAACCACCAGACATGCTCAT
80958754 ATGTCTTGGTC
131 ATGTCTTGGTC
* ** * *
80958765 GTGGTTGAAATTGACTTGGGTCACATGGCTAACCACACGCCCGTGTGTCTAGCCTATGCACACTT
1 GTGGTTGAAACTGACTTGGGTCACACAGCTAACCACACGCCCATGTGTCTAGCCCATGCACACTT
* * * * * *
80958830 TGAAATGGCCTCACACGCCCATGTGTCAAGGTTGTGTGCCTCACACGACCACCA
66 CGAAATGGCCACACACGCCCACGTGTCAAGGCTGTGTACCTCACACAACCACCA
80958884 TTGTAGGACT
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
141 103 1.00
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.24
Consensus pattern (141 bp):
GTGGTTGAAACTGACTTGGGTCACACAGCTAACCACACGCCCATGTGTCTAGCCCATGCACACTT
CGAAATGGCCACACACGCCCACGTGTCAAGGCTGTGTACCTCACACAACCACCAGACATGCTCAT
ATGTCTTGGTC
Found at i:80961741 original size:79 final size:80
Alignment explanation
Indices: 80961600--80961781 Score: 237
Period size: 79 Copynumber: 2.3 Consensus size: 80
80961590 TACTCGTTCA
* *
80961600 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAT
* *
80961664 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
**
80961679 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGGA
* *
80961742 TATGGTCACTTAGCAC
65 TATAGTAACTTAGCAC
*
80961758 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
80961782 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
78 35 0.39
79 40 0.44
80 15 0.17
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:80961781 original size:40 final size:40
Alignment explanation
Indices: 80961579--80961781 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
80961569 CGGAATTTAA
** *
80961579 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80961619 CCGGTTATAGTAACTCGCACAAATGCCTTC-GGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80961658 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80961697 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80961737 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80961777 CCGGA
1 CCGGA
80961782 CATCATTCGA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 67 0.48
40 58 0.42
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80969737 original size:39 final size:40
Alignment explanation
Indices: 80969623--80969754 Score: 205
Period size: 40 Copynumber: 3.3 Consensus size: 40
80969613 GCTACTCGTT
*
80969623 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
80969663 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
80969703 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
80969742 CAAATGCCTTCGG
1 CAAATGCCTTCGG
80969755 ATCTTAGTTC
Statistics
Matches: 85, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
39 35 0.41
40 48 0.56
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:80971214 original size:47 final size:47
Alignment explanation
Indices: 80971109--80971449 Score: 576
Period size: 47 Copynumber: 7.3 Consensus size: 47
80971099 CCCTTCGGGA
* *
80971109 CTTATCACATTTATACACTTTCACATCCATCACATT-GCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
80971155 CTTATCACATATATACACCTTCACATCCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
80971202 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
80971249 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
80971296 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
80971343 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
80971390 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
80971437 CTTATCACATATA
1 CTTATCACATATA
80971450 CATATCTTGT
Statistics
Matches: 277, Mismatches: 17, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
46 34 0.12
47 243 0.88
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:80971351 original size:22 final size:22
Alignment explanation
Indices: 80971324--80971399 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
80971314 TTTCACATTC
80971324 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
80971346 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
80971370 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
80971393 ATCACAT
1 ATCACAT
80971400 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:80976708 original size:40 final size:42
Alignment explanation
Indices: 80976604--80976719 Score: 125
Period size: 40 Copynumber: 2.8 Consensus size: 42
80976594 TAAGAATTCG
* * *
80976604 CACACTTAGTGCTTTAATGATTAGCCGAAGCTA-CCTCATTATCG
1 CACACTTAGTACTTT-AT-A-TAGCCGAAGCTATTCTCATTATCA
80976648 CACACTTAGTACTTTATATAGCCGAAGCTATTC-CATT-TCA
1 CACACTTAGTACTTTATATAGCCGAAGCTATTCTCATTATCA
80976688 CACACTTAG-AGCTATT-TATAGCCGAAGCTATT
1 CACACTTAGTA-CT-TTATATAGCCGAAGCTATT
80976720 TTGAATTGCA
Statistics
Matches: 66, Mismatches: 3, Indels: 10
0.84 0.04 0.13
Matches are distributed among these distances:
39 1 0.02
40 29 0.44
41 18 0.27
42 2 0.03
43 2 0.03
44 14 0.21
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (42 bp):
CACACTTAGTACTTTATATAGCCGAAGCTATTCTCATTATCA
Found at i:80984166 original size:27 final size:27
Alignment explanation
Indices: 80984124--80984419 Score: 421
Period size: 27 Copynumber: 11.0 Consensus size: 27
80984114 TTAGTTTACC
*
80984124 AAATTACCAAAATACCCCTGTTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
80984151 AAATCACTAAATTACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
80984178 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
80984205 AAATCACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
80984232 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
80984259 AAATTACCAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
80984286 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
80984313 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
80984340 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
80984367 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
80984394 AAATTACCAAAATACCCCTGATTTGT
1 AAATTACCAAAATACCCCTGGTTTGT
80984420 GAGATTATTG
Statistics
Matches: 238, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 238 1.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:80984203 original size:54 final size:54
Alignment explanation
Indices: 80984124--80984509 Score: 441
Period size: 54 Copynumber: 7.1 Consensus size: 54
80984114 TTAGTTTACC
* * * *
80984124 AAATTACCAAAATACCCCTGTTTTGTAAAATCACTAAATTACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
80984178 AAATTACCAAAATACCCCTGGTTTGTAAAATCACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
80984232 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
80984286 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * * *
80984340 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *** * *** *
80984394 AAATTACCAAAATACCCCTGATTTGTGAGATTATTGAACTACCCTTGACCTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
** ** * * *
80984448 AAATTATTAAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
80984502 GAATTACC
1 AAATTACC
80984510 GTTTTACCCT
Statistics
Matches: 288, Mismatches: 43, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
53 4 0.01
54 284 0.99
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:80984420 original size:27 final size:27
Alignment explanation
Indices: 80984124--80984498 Score: 387
Period size: 27 Copynumber: 13.9 Consensus size: 27
80984114 TTAGTTTACC
*
80984124 AAATTACCAAAATACCCCTGTTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * * * *
80984151 AAATCACTAAATTACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
80984178 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * * *
80984205 AAATCACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
80984232 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
80984259 AAATTACCAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-CTGATTTGTA
*
80984286 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
80984313 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
80984340 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
80984367 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
*
80984394 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
* *** * * **
80984421 AGATTATTGAACTACCCTTGACCTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
** *
80984448 AAATTATTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *
80984475 AAATTACCAAAGTACCCTTGATTT
1 AAATTACCAAAATACCCCTGATTT
80984499 ACAGAATTAC
Statistics
Matches: 296, Mismatches: 46, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.02
27 285 0.96
28 6 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:80984544 original size:27 final size:27
Alignment explanation
Indices: 80984474--80984545 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
80984464 CTCGACTTGT
**
80984474 AAAATTACC-AAAGTACCCTTGATTTAC
1 AAAATTACCGAAA-TACCCTCAATTTAC
* ***
80984501 AGAATTACCGTTTTACCCTCAATTTAC
1 AAAATTACCGAAATACCCTCAATTTAC
80984528 AAAATTACCGAAATACCC
1 AAAATTACCGAAATACCC
80984546 CTGTAGGGTA
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTCAATTTAC
Found at i:80984560 original size:27 final size:27
Alignment explanation
Indices: 80984530--80984911 Score: 520
Period size: 27 Copynumber: 14.3 Consensus size: 27
80984520 CAATTTACAA
80984530 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
80984557 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
80984584 AATTACC-ACAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* * **
80984611 AATTATCGCAATACCCCTAAAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
80984638 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80984665 AATTACCGCAATA--CCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
80984690 AATTATCGCAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80984717 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
80984744 AATTACCGCAATACCCCTGTAGGGTAC
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
80984771 AATTATTGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
80984798 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80984825 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
80984852 AATTACAGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
80984879 AATTACAGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
80984905 AATTACC
1 AATTACC
80984912 ATTTTTCCCC
Statistics
Matches: 317, Mismatches: 34, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
25 24 0.08
26 16 0.05
27 277 0.87
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:80985389 original size:22 final size:22
Alignment explanation
Indices: 80985337--80985401 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
80985327 TTAAAGCCTT
* *
80985337 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
80985359 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
80985381 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
80985402 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:80985590 original size:27 final size:27
Alignment explanation
Indices: 80985560--80985661 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
80985550 ATTCTGTTAA
* *
80985560 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
*
80985587 GTGGCTATGCCACAAATATTTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
80985614 GTGGCTCTGCCACAATATCTGTATCTA
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
80985641 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
80985662 ATAACTGAGC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.80
28 6 0.09
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:80985844 original size:31 final size:31
Alignment explanation
Indices: 80985798--80985900 Score: 127
Period size: 31 Copynumber: 3.3 Consensus size: 31
80985788 TTGCATTCAC
* *
80985798 ATTCTGATTTTTGATTCTGTTACGTGATACTT
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
80985830 ATTCTGATTTTGATTATGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * *
80985861 ATTCTGATTCTGATTCT-TTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTT-ACCTGATACTG
80985892 ATTCTGATT
1 ATTCTGATT
80985901 CTAGTTTTGA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
30 2 0.03
31 54 0.86
32 7 0.11
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:80986780 original size:68 final size:68
Alignment explanation
Indices: 80986666--80986792 Score: 168
Period size: 68 Copynumber: 1.9 Consensus size: 68
80986656 TAGATGGTAT
* * *
80986666 GTAGCTAGGTCACATGTGTAATACAGGATGTATACCATGTGTACAAGAGAGCTGCGAGACATTAT
1 GTAGCTAGGTCACATGGGTAATACAGGATGTACACCATGTGTACAAGAGAGCTACGAGACATTAT
80986731 GAG
66 GAG
* * *
80986734 GTAGCTAGGTCGCATGGGTGATACTATG-TGTACACCATGTAG-ACAAGAGAGCTACGAGA
1 GTAGCTAGGTCACATGGGTAATAC-AGGATGTACACCATGT-GTACAAGAGAGCTACGAGA
80986793 TAAATTTAGC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
68 48 0.94
69 3 0.06
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (68 bp):
GTAGCTAGGTCACATGGGTAATACAGGATGTACACCATGTGTACAAGAGAGCTACGAGACATTAT
GAG
Found at i:80990561 original size:40 final size:40
Alignment explanation
Indices: 80990472--80990569 Score: 108
Period size: 40 Copynumber: 2.5 Consensus size: 40
80990462 GCTACCTCAG
*
80990472 TATCGCACACTTAGTGCCACATATAGCCAAAGCTATTCCA
1 TATCGCACACTTAGTGCTACATATAGCCAAAGCTATTCCA
* * ** * **
80990512 TTTCACACACTTAGTGCTATTTATAGCCGAAGCTATTTTGA
1 TATCGCACACTTAGTGCTACATATAGCCAAAGCTA-TTCCA
80990553 -ATCGCACACTTAGTGCT
1 TATCGCACACTTAGTGCT
80990570 GAATACCTTC
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
40 44 0.94
41 3 0.06
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.32
Consensus pattern (40 bp):
TATCGCACACTTAGTGCTACATATAGCCAAAGCTATTCCA
Found at i:80991683 original size:31 final size:31
Alignment explanation
Indices: 80991648--80991711 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
80991638 CCTTTTCATA
*
80991648 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
80991679 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
80991710 TT
1 TT
80991712 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:80991957 original size:24 final size:24
Alignment explanation
Indices: 80991905--80992070 Score: 221
Period size: 24 Copynumber: 7.0 Consensus size: 24
80991895 GCTTTATCAT
*
80991905 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
80991930 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
80991954 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
80991977 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
80992001 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
80992025 ATAACTGGTGCATAAGCCC-TTTC
1 ATAACTGGGGCATAAGCCCTTTTA
80992048 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
80992071 TCACTTCCTC
Statistics
Matches: 127, Mismatches: 11, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
23 42 0.33
24 73 0.57
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:80991981 original size:47 final size:48
Alignment explanation
Indices: 80991904--80992070 Score: 232
Period size: 47 Copynumber: 3.5 Consensus size: 48
80991894 TGCTTTATCA
* *
80991904 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
80991953 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
80992000 GATAACTGGGGCATAAGCCCTTTTGATAACTGGTGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
80992047 CATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
80992071 TCACTTCCTC
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
47 70 0.65
48 25 0.23
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:80992005 original size:71 final size:71
Alignment explanation
Indices: 80991905--80992070 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
80991895 GCTTTATCAT
* *
80991905 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
80991969 GCCCTTTA
64 GCCCTTTA
* * * *
80991977 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGTGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
*
80992042 CCTTTC
66 CCTTTA
80992048 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
80992071 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 74 0.86
72 12 0.14
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:80992143 original size:9 final size:9
Alignment explanation
Indices: 80992129--80992205 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
80992119 ATCTCGTGTG
80992129 CATATCATA
1 CATATCATA
*
80992138 CATATCATGTG
1 CATATCA--TA
80992149 CATATCATA
1 CATATCATA
* *
80992158 CATGTCATGTG
1 CATATCA--TA
80992169 CATATCATA
1 CATATCATA
*
80992178 CATATCATGTG
1 CATATCA--TA
80992189 CATATCATA
1 CATATCATA
80992198 CATATCAT
1 CATATCAT
80992206 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:80992148 original size:20 final size:20
Alignment explanation
Indices: 80992125--80992207 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
80992115 GAACATCTCG
80992125 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
80992145 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
80992165 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
80992185 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
80992205 TGT
1 TGT
80992208 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:80992154 original size:11 final size:11
Alignment explanation
Indices: 80992125--80992196 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
80992115 GAACATCTCG
80992125 TGTGCATATCA
1 TGTGCATATCA
*
80992136 --TACATATCA
1 TGTGCATATCA
80992145 TGTGCATATCA
1 TGTGCATATCA
* *
80992156 --TACATGTCA
1 TGTGCATATCA
80992165 TGTGCATATCA
1 TGTGCATATCA
*
80992176 --TACATATCA
1 TGTGCATATCA
80992185 TGTGCATATCA
1 TGTGCATATCA
80992196 T
1 T
80992197 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:80993562 original size:27 final size:27
Alignment explanation
Indices: 80993532--80994061 Score: 626
Period size: 27 Copynumber: 19.6 Consensus size: 27
80993522 AGGGTATTTT
*
80993532 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
80993559 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
80993586 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
80993613 GGTAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
80993640 GGTAGTTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
80993667 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
80993694 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
80993721 AGTAATTCTATAAATCGAGGTTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
80993748 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
80993775 -GATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * **
80993802 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
80993829 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
80993856 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
80993883 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
80993910 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
80993937 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
80993964 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* ** *
80993991 -GATAATTTTACAAATCGAGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
*
80994018 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
80994045 AGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
80994062 GGAGTACTTT
Statistics
Matches: 436, Mismatches: 51, Indels: 32
0.84 0.10 0.06
Matches are distributed among these distances:
26 7 0.02
27 421 0.97
28 8 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:80996784 original size:31 final size:31
Alignment explanation
Indices: 80996749--80996812 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
80996739 CCTTTTCATA
*
80996749 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
80996780 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
80996811 TT
1 TT
80996813 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:80997057 original size:24 final size:24
Alignment explanation
Indices: 80997005--80997194 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
80996995 GCTTTATCAT
*
80997005 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
80997030 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
80997054 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
80997077 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
80997101 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
80997125 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
80997149 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
80997172 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
80997195 TCACTTCCTC
Statistics
Matches: 153, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 43 0.28
24 98 0.64
25 12 0.08
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:80997081 original size:47 final size:48
Alignment explanation
Indices: 80997004--80997195 Score: 291
Period size: 47 Copynumber: 4.0 Consensus size: 48
80996994 TGCTTTATCA
* *
80997004 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
80997053 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
80997100 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
80997148 GATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
80997195 T
1 T
80997196 CACTTCCTCC
Statistics
Matches: 133, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
47 70 0.53
48 50 0.38
49 13 0.10
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:80997105 original size:71 final size:72
Alignment explanation
Indices: 80997005--80997195 Score: 289
Period size: 71 Copynumber: 2.7 Consensus size: 72
80996995 GCTTTATCAT
* *
80997005 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAA
80997069 GCCC-TTTA
64 GCCCTTTTA
* * *
80997077 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
*
80997142 CCTTTTG
66 CCTTTTA
80997149 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTT
80997196 CACTTCCTCC
Statistics
Matches: 109, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
71 76 0.70
72 33 0.30
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
CCTTTTA
Found at i:80997267 original size:9 final size:9
Alignment explanation
Indices: 80997253--80997329 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
80997243 ATCTCGTGTG
80997253 CATATCATA
1 CATATCATA
*
80997262 CATATCATGTG
1 CATATCA--TA
80997273 CATATCATA
1 CATATCATA
* *
80997282 CATGTCATGTG
1 CATATCA--TA
80997293 CATATCATA
1 CATATCATA
*
80997302 CATATCATGTG
1 CATATCA--TA
80997313 CATATCATA
1 CATATCATA
80997322 CATATCAT
1 CATATCAT
80997330 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:80997272 original size:20 final size:20
Alignment explanation
Indices: 80997249--80997331 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
80997239 GAACATCTCG
80997249 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
80997269 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
80997289 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
80997309 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
80997329 TGT
1 TGT
80997332 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:80997278 original size:11 final size:11
Alignment explanation
Indices: 80997249--80997320 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
80997239 GAACATCTCG
80997249 TGTGCATATCA
1 TGTGCATATCA
*
80997260 --TACATATCA
1 TGTGCATATCA
80997269 TGTGCATATCA
1 TGTGCATATCA
* *
80997280 --TACATGTCA
1 TGTGCATATCA
80997289 TGTGCATATCA
1 TGTGCATATCA
*
80997300 --TACATATCA
1 TGTGCATATCA
80997309 TGTGCATATCA
1 TGTGCATATCA
80997320 T
1 T
80997321 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:80998672 original size:27 final size:27
Alignment explanation
Indices: 80998652--80999154 Score: 611
Period size: 27 Copynumber: 18.6 Consensus size: 27
80998642 AGGGTATTTT
*
80998652 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
80998679 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
80998706 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
80998733 GGTAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
80998760 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
80998787 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
80998814 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * * * *
80998841 GGTAATTCTATAAATTGAGGTTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
80998868 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
80998895 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
80998922 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
80998949 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
80998976 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
80999003 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
80999030 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* * *
80999057 GGTAATTTTGTAAATCGAGAGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
80999084 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
80999111 AGTAATTCTATAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
80999138 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
80999155 GGAGTACTTT
Statistics
Matches: 415, Mismatches: 51, Indels: 20
0.85 0.10 0.04
Matches are distributed among these distances:
26 3 0.01
27 407 0.98
28 5 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:80999177 original size:81 final size:81
Alignment explanation
Indices: 80998653--80999154 Score: 681
Period size: 81 Copynumber: 6.2 Consensus size: 81
80998643 GGGTATTTTA
* * * * *
80998653 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTA
*
80998718 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAACG
* * *
80998734 GTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG-TAATTCTGT
* *
80998798 AAATCGGGGGTAAAATG
65 AAATCGAGGGTAAAACG
* * * * *
80998815 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATTGAGGTTAAAATAGTAATTCTGT
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGT
80998879 AAA-CTGAGGGTAAAACG
65 AAATC-GAGGGTAAAACG
80998896 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTA
* *
80998961 AATCAAGGGTAAAACA
66 AATCGAGGGTAAAACG
* * *
80998977 ATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGT
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGT
80999041 AAA-CTGAGGGTAAAACG
65 AAATC-GAGGGTAAAACG
* * * * *
80999058 GTAATTTTGTAAATCGAGAGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTA
*
80999123 AATTGAGGGTAAAACG
66 AATCGAGGGTAAAACG
80999139 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
80999155 GGAGTACTTT
Statistics
Matches: 373, Mismatches: 38, Indels: 20
0.87 0.09 0.05
Matches are distributed among these distances:
80 5 0.01
81 364 0.98
82 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAACG
Found at i:81006043 original size:30 final size:30
Alignment explanation
Indices: 81006009--81006093 Score: 152
Period size: 30 Copynumber: 2.8 Consensus size: 30
81005999 AGTGTGTCAT
81006009 CCCGTGTGACACACACGACCAATAGACACG
1 CCCGTGTGACACACACGACCAATAGACACG
*
81006039 CCCGTGTGACACACATGACCAATAGACACG
1 CCCGTGTGACACACACGACCAATAGACACG
*
81006069 CCCGTGGGACACACACGACCAATAG
1 CCCGTGTGACACACACGACCAATAG
81006094 GTCATGTCAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.33, C:0.35, G:0.21, T:0.11
Consensus pattern (30 bp):
CCCGTGTGACACACACGACCAATAGACACG
Found at i:81011297 original size:19 final size:21
Alignment explanation
Indices: 81011272--81011321 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 21
81011262 GTTGTGCAGA
*
81011272 AAAAAGAAAAAA-ATTGAAA-
1 AAAAAGAAAAAATATCGAAAT
*
81011291 GAAAAGAAAAAATATCGAAAT
1 AAAAAGAAAAAATATCGAAAT
81011312 AAAAAGAAAA
1 AAAAAGAAAA
81011322 TGTCAGCAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 11 0.42
20 6 0.23
21 9 0.35
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (21 bp):
AAAAAGAAAAAATATCGAAAT
Found at i:81011301 original size:20 final size:21
Alignment explanation
Indices: 81011272--81011321 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
81011262 GTTGTGCAGA
*
81011272 AAAAAG-AAAAAAATTGAAA-
1 AAAAAGAAAAAAAATCGAAAT
* *
81011291 GAAAAGAAAAAATATCGAAAT
1 AAAAAGAAAAAAAATCGAAAT
81011312 AAAAAGAAAA
1 AAAAAGAAAA
81011322 TGTCAGCAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 5 0.20
20 11 0.44
21 9 0.36
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (21 bp):
AAAAAGAAAAAAAATCGAAAT
Found at i:81011400 original size:18 final size:18
Alignment explanation
Indices: 81011364--81011406 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
81011354 AGTGTGAGAG
* *
81011364 AAAAGAGATTGATATTGA
1 AAAAGAGATTGAGAGTGA
*
81011382 AAAATAGATTGAGAGTGA
1 AAAAGAGATTGAGAGTGA
81011400 AGAAAGA
1 A-AAAGA
81011407 AACGAAAGTG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.53, C:0.00, G:0.26, T:0.21
Consensus pattern (18 bp):
AAAAGAGATTGAGAGTGA
Found at i:81018463 original size:40 final size:40
Alignment explanation
Indices: 81018426--81018607 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
81018416 GCTACTCGTT
* *
81018426 CAAACGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
81018466 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
81018506 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTACCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
81018545 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
81018586 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
81018608 AGACATCATT
Statistics
Matches: 122, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 75 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81018537 original size:79 final size:80
Alignment explanation
Indices: 81018426--81018607 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 80
81018416 GCTACTCGTT
* *
81018426 CAAACGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
81018490 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
* * **
81018506 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTACCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 -CAAAGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
81018569 GATATAGTCACTTAGCA
64 GATATAGTAACTTAGCA
81018586 CAAAGCCTTCGGGACTTAGCCC
1 CAAAGCCTTCGGGACTTAGCCC
81018608 AGACATCATT
Statistics
Matches: 87, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 4 0.05
79 59 0.68
80 21 0.24
81 3 0.03
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:81023988 original size:39 final size:39
Alignment explanation
Indices: 81023934--81024086 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
81023924 GAATGTTCGA
*
81023934 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
81023973 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
81024012 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
81024051 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
81024087 GTTACCATAA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:81024112 original size:39 final size:39
Alignment explanation
Indices: 81023935--81024115 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
81023925 AATGTTCGAG
* *
81023935 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
81023974 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
81024013 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
81024052 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG-GTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
81024091 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
81024116 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 111 0.87
40 17 0.13
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:81027026 original size:39 final size:39
Alignment explanation
Indices: 81026942--81027094 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
81026932 TATGGTAACC
** * *
81026942 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
81026982 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
81027021 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
81027060 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
81027095 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:81027067 original size:78 final size:79
Alignment explanation
Indices: 81026911--81027093 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
81026901 TCGTTCAAAC
* * **
81026911 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
81026976 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
81026991 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
81027055 CAATTTGCACAATT
66 CAATTTGCACAATT
81027069 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
81027094 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:81031483 original size:39 final size:39
Alignment explanation
Indices: 81031428--81031580 Score: 227
Period size: 39 Copynumber: 3.9 Consensus size: 39
81031418 GAATGTTCGA
81031428 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* *
81031467 GTGATATCCGGTCTAAGCCCGAAGGCAATTGTGCG-CTAT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAAT-T
* *
81031506 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* *
81031545 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
81031581 GGTTACCATA
Statistics
Matches: 103, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 84 0.82
40 18 0.17
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.25
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
Found at i:81031526 original size:78 final size:79
Alignment explanation
Indices: 81031429--81031580 Score: 263
Period size: 78 Copynumber: 1.9 Consensus size: 79
81031419 AATGTTCGAG
81031429 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCC-GGTCTAAG-CCCGAAGG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGT-TAAGTCCCGAAGG
81031492 CAATTGTGCGCTATA
65 CAATTGTGCGCTATA
*
81031507 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGTTAAGTCCCGAAGGC
*
81031572 ATTTGTGCG
66 AATTGTGCG
81031581 GGTTACCATA
Statistics
Matches: 70, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
78 50 0.71
79 20 0.29
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGTTAAGTCCCGAAGGC
AATTGTGCGCTATA
Found at i:81031596 original size:40 final size:40
Alignment explanation
Indices: 81031435--81031610 Score: 153
Period size: 39 Copynumber: 4.5 Consensus size: 40
81031425 CGAGTGATAT
* *** *
81031435 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * ** *
81031474 CCGGTCTAAG-CCCGAAGGCAATTGTGCG-CTATATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGT-TACCATAA
*** *
81031513 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
81031552 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
81031592 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81031611 TGTTTTGAAC
Statistics
Matches: 119, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
38 1 0.01
39 77 0.65
40 41 0.34
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:81037030 original size:17 final size:18
Alignment explanation
Indices: 81036999--81037039 Score: 75
Period size: 17 Copynumber: 2.3 Consensus size: 18
81036989 AAAGAAACGG
81036999 AGTAAGCATTAAATGCTT
1 AGTAAGCATTAAATGCTT
81037017 AGTAAGCA-TAAATGCTT
1 AGTAAGCATTAAATGCTT
81037034 AGTAAG
1 AGTAAG
81037040 TTTGAGCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (18 bp):
AGTAAGCATTAAATGCTT
Found at i:81037469 original size:79 final size:81
Alignment explanation
Indices: 81037362--81037541 Score: 235
Period size: 79 Copynumber: 2.3 Consensus size: 81
81037352 TCGTTGAAAC
* * *
81037362 GCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATT
1 GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATA
* *
81037425 TAGTAAC-TCGCACCAAT
65 TAGTAACTTAGCA-CAAA
**
81037442 GCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATAT
*
81037505 AGTCACTTAGCACAAA
66 AGTAACTTAGCACAAA
81037521 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
81037542 CATCATTCGA
Statistics
Matches: 88, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
78 3 0.03
79 60 0.68
80 25 0.28
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATAT
AGTAACTTAGCACAAA
Found at i:81037541 original size:40 final size:40
Alignment explanation
Indices: 81037362--81037541 Score: 233
Period size: 40 Copynumber: 4.5 Consensus size: 40
81037352 TCGTTGAAAC
* *
81037362 GCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAAT
* * *
81037402 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAAT
81037442 GCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAAT
* * *
81037481 GCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-
1 GCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACAAAT
81037521 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
81037542 CATCATTCGA
Statistics
Matches: 122, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.62
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAAT
Found at i:81044729 original size:40 final size:40
Alignment explanation
Indices: 81044665--81044853 Score: 199
Period size: 38 Copynumber: 4.8 Consensus size: 40
81044655 GCTACTCGTT
* * * ***
81044665 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
81044705 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
81044745 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* **
81044784 C-ATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
81044822 C-ATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
81044854 TTCGCACATT
Statistics
Matches: 134, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
38 66 0.49
39 23 0.17
40 45 0.34
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Done.