Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 27 of 770
Found at i:7794954 original size:3 final size:3
Alignment explanation
Indices: 7794946--7794985 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
7794936 TGTCGTAATT
7794946 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
7794986 TATTATTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:7794990 original size:3 final size:3
Alignment explanation
Indices: 7794984--7795010 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7794974 AATAATAATA
7794984 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
7795011 GTATTTGTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:7804294 original size:2 final size:2
Alignment explanation
Indices: 7804287--7804311 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7804277 GAAAACTACA
7804287 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
7804312 GATGTATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7808354 original size:12 final size:13
Alignment explanation
Indices: 7808339--7808367 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7808329 ATAATCATCT
7808339 AAATATT-TCATA
1 AAATATTATCATA
7808351 AAATATTATCATA
1 AAATATTATCATA
7808364 AAAT
1 AAAT
7808368 TAAATATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (13 bp):
AAATATTATCATA
Found at i:7826467 original size:10 final size:11
Alignment explanation
Indices: 7826434--7826488 Score: 53
Period size: 11 Copynumber: 5.1 Consensus size: 11
7826424 ACATTAGCAA
7826434 TTAATTAATTTT
1 TTAA-TAATTTT
7826446 TTAA-ATATTTT
1 TTAATA-ATTTT
*
7826457 TTTATAA-TTT
1 TTAATAATTTT
*
7826467 TT-ATACTTTT
1 TTAATAATTTT
7826477 TTAATAATTTT
1 TTAATAATTTT
7826488 T
1 T
7826489 ATTTTTATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
9 3 0.08
10 11 0.31
11 17 0.47
12 5 0.14
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (11 bp):
TTAATAATTTT
Found at i:7826476 original size:20 final size:20
Alignment explanation
Indices: 7826453--7826490 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7826443 TTTTTAAATA
*
7826453 TTTTTTTATAATTTTTATAC
1 TTTTTTAATAATTTTTATAC
7826473 TTTTTTAATAATTTTTAT
1 TTTTTTAATAATTTTTAT
7826491 TTTTATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTTTAATAATTTTTATAC
Found at i:7831345 original size:21 final size:22
Alignment explanation
Indices: 7831306--7831348 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
7831296 TACATAGTTC
7831306 GGAAAAATAAGACACACGAGCAA
1 GGAAAAATAAGA-ACACGAGCAA
7831329 GGAAAAATAAG-ACACGAGCA
1 GGAAAAATAAGAACACGAGCA
7831349 CGAGACGGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.45
23 11 0.55
ACGTcount: A:0.56, C:0.16, G:0.23, T:0.05
Consensus pattern (22 bp):
GGAAAAATAAGAACACGAGCAA
Found at i:7835968 original size:441 final size:438
Alignment explanation
Indices: 7835346--7836184 Score: 1276
Period size: 441 Copynumber: 1.9 Consensus size: 438
7835336 TGATTGACGC
*
7835346 ACATTAGTGACAAGTTTTGGAGTGTCTTAGGGATTCGAGAGATTGATTTTTAACAATTTTAGTTG
1 ACATTAGTGACAAGTTTTGGAGTGTCTTAGGGATTCGAGAGATTGATTTTAAACAATTTTAGTTG
* * * *
7835411 AATATTAGGCTACAAATATCTGTATGTGTGAAGAGTAGTTTAGGCTTTAACCAATAGTTGTACTA
66 AATATTA-GATAC-AATATATATATGTGTGAAGAGTAGTTTAGGCTTTAACCAATAGTTATACTA
* *
7835476 GTTGAATAAAATCTCTCTCCGAAAGAGGCTCTATAAACGTAGGATTGTTAATTTGAACAGCGTTA
129 GTTGAATAAAATCTCTCTCCGAAAGAGGCTCTATAAACGTAGGATTGTTAATCTAAACAGCGTTA
* ** **
7835541 ATAAATATTGCATTTACATCTTCTTCTACCTTATTAAAAAAATATGTTCTATCCCAATTTTTGGT
194 ATAAATATTGCATTTACATCTTCTTCTACCTTACTAAAAAAATATACTCTATCCCAATTTCCGGT
*
7835606 CCAACGTAAGATTAACCAAAATTGTTCTGAACAAAGGCTTTTTCATTAATGTTTACA-ATTTATT
259 CCAACGTAAGATTAAACAAAATTGTTCTG-ACAAAGGCTTTTTCATTAATG-TT-CAGA---ATT
* * *
7835670 TTTTTTATCAATTTGGTTCTTATTCTTTTTTTAGTTAAATTTGATCATAACATTTCAAAAAGAGT
318 TTTTTTAACAAATTGGTTCTTATTC-CTTTTTAGTTAAATTTGATCATAACATTTCAAAAAGAGT
7835735 CAAATTGTTTTTCTAATGAAAATGTTGACCAAAACACTAATTTTTAAACAAGGATGT
382 CAAATTGTTTTTCTAATGAAAATGTTGACCAAAACACTAATTTTTAAACAAGGATGT
* *
7835792 ACATTAGTGACAAGTTTTGGAGTGTCTTAGGGATTCGGGAGATTGATTTTAAACAATTTTGGTTG
1 ACATTAGTGACAAGTTTTGGAGTGTCTTAGGGATTCGAGAGATTGATTTTAAACAATTTTAGTTG
* *
7835857 AATA-TA-ATATC-CT-TATATATGTGTGAAGGGTAGTTTAGGCTTTAACCAATAGTTATACTAG
66 AATATTAGATA-CAATATATATATGTGTGAAGAGTAGTTTAGGCTTTAACCAATAGTTATACTAG
* * *
7835918 TTGAATAAAATCTCTCTCTGAACA-AGGCTCTGTAAACGTAGGATTGTTAATCTAAACTGCGTTA
130 TTGAATAAAATCTCTCTCCGAA-AGAGGCTCTATAAACGTAGGATTGTTAATCTAAACAGCGTTA
* * *
7835982 ATAAATATTGTATTTACATCTTGTTCTACCTTACTAAAAAAATATACTCTATCCCACTTTCCGGT
194 ATAAATATTGCATTTACATCTTCTTCTACCTTACTAAAAAAATATACTCTATCCCAATTTCCGGT
* *
7836047 CCAACGTAAGATTAAACAAAATTGTTTTGACCAAGGCTTTTTCATTAATGTTCAGAATTTTTTTT
259 CCAACGTAAGATTAAACAAAATTGTTCTGACAAAGGCTTTTTCATTAATGTTCAGAATTTTTTTT
*
7836112 AACAAATTGGTTCTTATTCCTTTTTAGTTAAATTTGGTCATAACATTTCAAAAAGAGTCAAATTG
324 AACAAATTGGTTCTTATTCCTTTTTAGTTAAATTTGATCATAACATTTCAAAAAGAGTCAAATTG
7836177 TTTTTCTA
389 TTTTTCTA
7836185 TTGGAAACAT
Statistics
Matches: 361, Mismatches: 29, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
435 52 0.14
436 26 0.07
438 2 0.01
439 3 0.01
440 20 0.06
441 185 0.51
442 2 0.01
443 2 0.01
444 1 0.00
445 2 0.01
446 66 0.18
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (438 bp):
ACATTAGTGACAAGTTTTGGAGTGTCTTAGGGATTCGAGAGATTGATTTTAAACAATTTTAGTTG
AATATTAGATACAATATATATATGTGTGAAGAGTAGTTTAGGCTTTAACCAATAGTTATACTAGT
TGAATAAAATCTCTCTCCGAAAGAGGCTCTATAAACGTAGGATTGTTAATCTAAACAGCGTTAAT
AAATATTGCATTTACATCTTCTTCTACCTTACTAAAAAAATATACTCTATCCCAATTTCCGGTCC
AACGTAAGATTAAACAAAATTGTTCTGACAAAGGCTTTTTCATTAATGTTCAGAATTTTTTTTAA
CAAATTGGTTCTTATTCCTTTTTAGTTAAATTTGATCATAACATTTCAAAAAGAGTCAAATTGTT
TTTCTAATGAAAATGTTGACCAAAACACTAATTTTTAAACAAGGATGT
Found at i:7844812 original size:31 final size:29
Alignment explanation
Indices: 7844777--7844844 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
7844767 ACCTGGGAGA
* *
7844777 TCCCTGTATTACAGTGACTGGATCAAATTAG
1 TCCCTGTATT--AGTAAATGGATCAAATTAG
* * *
7844808 TCCCTCTATTATTAAATGGATCAATTTAG
1 TCCCTGTATTAGTAAATGGATCAAATTAG
7844837 TCCCTGTA
1 TCCCTGTA
7844845 CTATTAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
29 22 0.71
31 9 0.29
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.37
Consensus pattern (29 bp):
TCCCTGTATTAGTAAATGGATCAAATTAG
Found at i:7844836 original size:29 final size:29
Alignment explanation
Indices: 7844795--7844852 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
7844785 TTACAGTGAC
*
7844795 TGGATCAAATTAGTCCCTCTATTATTAAA
1 TGGATCAAATTAGTCCCTCTACTATTAAA
* *
7844824 TGGATCAATTTAGTCCCTGTACTATTAAA
1 TGGATCAAATTAGTCCCTCTACTATTAAA
7844853 AAGAATCAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (29 bp):
TGGATCAAATTAGTCCCTCTACTATTAAA
Found at i:7845096 original size:29 final size:30
Alignment explanation
Indices: 7845025--7845097 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 30
7845015 ATTCCAATTT
* * *
7845025 GGACTTATTTGATTCATTTTAATAGTAGAT
1 GGACTAATTTGATCCATTTTAATAGTAGAG
* **
7845055 AGACTAAACTGATCCA-TTTAATAGTAGAG
1 GGACTAATTTGATCCATTTTAATAGTAGAG
7845084 GGACTAATTTGATC
1 GGACTAATTTGATC
7845098 AAGCTCCTTG
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
29 23 0.68
30 11 0.32
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (30 bp):
GGACTAATTTGATCCATTTTAATAGTAGAG
Found at i:7852258 original size:14 final size:14
Alignment explanation
Indices: 7852239--7852270 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
7852229 TGCTAACTCC
7852239 GCAATATATAAGGG
1 GCAATATATAAGGG
7852253 GCAATATATAAGGG
1 GCAATATATAAGGG
7852267 GCAA
1 GCAA
7852271 ATGCAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (14 bp):
GCAATATATAAGGG
Found at i:7852539 original size:31 final size:31
Alignment explanation
Indices: 7852501--7852563 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
7852491 CCATGTGTAC
7852501 CTTATGCTAACATACAAAGACCAGTTTTTAA
1 CTTATGCTAACATACAAAGACCAGTTTTTAA
**
7852532 CTTATGCTAACATACAACTACCAGTTTTTAA
1 CTTATGCTAACATACAAAGACCAGTTTTTAA
7852563 C
1 C
7852564 AGTAAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (31 bp):
CTTATGCTAACATACAAAGACCAGTTTTTAA
Found at i:7857757 original size:31 final size:31
Alignment explanation
Indices: 7857722--7857795 Score: 130
Period size: 31 Copynumber: 2.4 Consensus size: 31
7857712 TTGTGGATAA
*
7857722 TTAAGTCAAATTAAATCAGATAATTAGTTAC
1 TTAAGTCAAAATAAATCAGATAATTAGTTAC
*
7857753 TTAAGTCAAAATAAATCAGATAATTAGTTGC
1 TTAAGTCAAAATAAATCAGATAATTAGTTAC
7857784 TTAAGTCAAAAT
1 TTAAGTCAAAAT
7857796 TCATCAAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.34
Consensus pattern (31 bp):
TTAAGTCAAAATAAATCAGATAATTAGTTAC
Found at i:7858223 original size:13 final size:14
Alignment explanation
Indices: 7858205--7858239 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
7858195 CATATCACCA
7858205 ACTTTATTTTAA-T
1 ACTTTATTTTAATT
7858218 ACTTTATTTTAATT
1 ACTTTATTTTAATT
7858232 A-TTTATTT
1 ACTTTATTT
7858240 ATACTAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 19 0.90
14 2 0.10
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.66
Consensus pattern (14 bp):
ACTTTATTTTAATT
Found at i:7863301 original size:15 final size:15
Alignment explanation
Indices: 7863281--7863311 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7863271 CTGTTTTGAA
7863281 TACAGTGGTGATAGT
1 TACAGTGGTGATAGT
7863296 TACAGTGGTGATAGT
1 TACAGTGGTGATAGT
7863311 T
1 T
7863312 GCTTAAGTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.32, T:0.35
Consensus pattern (15 bp):
TACAGTGGTGATAGT
Found at i:7863407 original size:2 final size:2
Alignment explanation
Indices: 7863400--7863432 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7863390 GTGATTGACT
7863400 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7863433 AATGTTAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7868787 original size:71 final size:72
Alignment explanation
Indices: 7868712--7868856 Score: 274
Period size: 72 Copynumber: 2.0 Consensus size: 72
7868702 TAAATATTTT
*
7868712 TTTTATTATTCT-AAAAAAATAAAATTCCAAAAATATTTTTTAATTAAAGTGAATTATTATTAAA
1 TTTTATTATTCTAAAAAAAATAAAATTCCAAAAATATTTTGTAATTAAAGTGAATTATTATTAAA
7868776 ATTTTAA
66 ATTTTAA
7868783 TTTTATTATTCTAAAAAAAATAAAATTCCAAAAATATTTTGTAATTAAAGTGAATTATTATTAAA
1 TTTTATTATTCTAAAAAAAATAAAATTCCAAAAATATTTTGTAATTAAAGTGAATTATTATTAAA
7868848 ATTTTAA
66 ATTTTAA
7868855 TT
1 TT
7868857 CGGATCACAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
71 12 0.17
72 60 0.83
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (72 bp):
TTTTATTATTCTAAAAAAAATAAAATTCCAAAAATATTTTGTAATTAAAGTGAATTATTATTAAA
ATTTTAA
Found at i:7869640 original size:171 final size:170
Alignment explanation
Indices: 7869331--7869725 Score: 424
Period size: 171 Copynumber: 2.3 Consensus size: 170
7869321 TAGTTATTTG
*
7869331 TTTTAGAATTAGGTGCAAATATGAAATGTAGTCAATGTGTTTGTAAAAAGTATTGAAATAAAGTG
1 TTTT-GAATTA-GTGCAAATATGAAATGTAGTCAATGTGTTTGTAAAAAGTATTGAAACAAAGTG
* ** * *
7869396 TTTCTATGCATTTACGCATAAAATGTCATTTTCTCTAATACCCATTTTATGAATTTTATCTCTTG
64 GTTCTATGCATTTACGCATAAAATCCCATTTTCTCTAATACCCATTTCATGAATATTATCTCTTG
*
7869461 AATGTATGTTAAGAAGCCC-TTAGT-TATTTCTTTAGCTCGTTA
129 AATGTATGTGAAGAA-CCCGTTAGTCT-TTTCTTTAGCTCGTTA
* * *
7869503 TTTTGAATTATGTGCAGATATGCAATGTAGTCAATGTGTTTGTAACAAGTA-T-AAACAGACAGT
1 TTTTGAATTA-GTGCAAATATGAAATGTAGTCAATGTGTTTGTAAAAAGTATTGAAACA-A-AGT
* ** * * * *
7869566 GGTTCTAT-TATTTTACGTGTAAAATCCCAATTTT-TGTGATGCCCGTTTCATGAATATTATCTC
63 GGTTCTATGCA-TTTACGCATAAAATCCC-ATTTTCTCTAATACCCATTTCATGAATATTATCTC
* * *
7869629 TTGAATGTATGTGAAGAACCCGTTAGTCTTTTGTTTAGGTTGTTA
126 TTGAATGTATGTGAAGAACCCGTTAGTCTTTTCTTTAGCTCGTTA
** * * *
7869674 TTTTGAGCTAGATACAAAAATGGGAATGTAGTCAATGTGTTTGTAAAAAGTA
1 TTTTGAATTAG-TGCAAATAT-GAAATGTAGTCAATGTGTTTGTAAAAAGTA
7869726 CCAGCAGAAA
Statistics
Matches: 187, Mismatches: 28, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
169 4 0.02
170 7 0.04
171 138 0.74
172 38 0.20
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (170 bp):
TTTTGAATTAGTGCAAATATGAAATGTAGTCAATGTGTTTGTAAAAAGTATTGAAACAAAGTGGT
TCTATGCATTTACGCATAAAATCCCATTTTCTCTAATACCCATTTCATGAATATTATCTCTTGAA
TGTATGTGAAGAACCCGTTAGTCTTTTCTTTAGCTCGTTA
Found at i:7870047 original size:142 final size:142
Alignment explanation
Indices: 7869786--7870070 Score: 491
Period size: 142 Copynumber: 2.0 Consensus size: 142
7869776 TTTTTCATAC
7869786 TGGTGTTTTCATGCAAGGTTGAAATATGATAGGTTCAAATTACATGGTTTTTGTTATTCTTTTAA
1 TGGTGTTTTCATGCAAGGTTGAAATATGATAGGTTCAAATTACATGGTTTTTGTTATTCTTTTAA
* *
7869851 TTGGTATTTTTTTTTATATATTCCTTTTGAAGAAACATGACGGTAAAAGTGCCATGGATGCCCTT
66 TTGGTATTTTTTTTTATATATTCCTTTTGAAGAAACATGACAGTAAAAGTGCCATGGAGGCCCTT
7869916 TGTGCTAAGAGT
131 TGTGCTAAGAGT
* *
7869928 TGGTTTTTTCATGCGAGGTTGAAATATGATAGGTTCAAATTACATGGTTTTTGTTATTCTTTTAA
1 TGGTGTTTTCATGCAAGGTTGAAATATGATAGGTTCAAATTACATGGTTTTTGTTATTCTTTTAA
* *
7869993 TTGGTATTTTTTTTATATATATTCCTTTTGAAGAACCAT-ACAGTAAAAGTGCCATGGAGGCCTT
66 TTGGTATTTTTTTT-TATATATTCCTTTTGAAGAAACATGACAGTAAAAGTGCCATGGAGGCCCT
*
7870057 TTGTGCTATGAGT
130 TTGTGCTAAGAGT
7870070 T
1 T
7870071 AGATTGCATT
Statistics
Matches: 135, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
142 112 0.83
143 23 0.17
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.44
Consensus pattern (142 bp):
TGGTGTTTTCATGCAAGGTTGAAATATGATAGGTTCAAATTACATGGTTTTTGTTATTCTTTTAA
TTGGTATTTTTTTTTATATATTCCTTTTGAAGAAACATGACAGTAAAAGTGCCATGGAGGCCCTT
TGTGCTAAGAGT
Found at i:7871981 original size:19 final size:20
Alignment explanation
Indices: 7871942--7871979 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
7871932 CTATTGAGTG
7871942 AGTTTTATTTTAATTTTTTA
1 AGTTTTATTTTAATTTTTTA
7871962 AGTTTTATTTTAATTTTT
1 AGTTTTATTTTAATTTTT
7871980 AAAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (20 bp):
AGTTTTATTTTAATTTTTTA
Found at i:7871989 original size:21 final size:20
Alignment explanation
Indices: 7871945--7871989 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7871935 TTGAGTGAGT
* **
7871945 TTTATTTTAATTTTTTAAGT
1 TTTATTTTAATTTTTAAAAA
7871965 TTTATTTTAATTTTTAAAAAA
1 TTTATTTTAATTTTT-AAAAA
7871986 TTTA
1 TTTA
7871990 ATAATGTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTATTTTAATTTTTAAAAA
Found at i:7884197 original size:23 final size:25
Alignment explanation
Indices: 7884136--7884200 Score: 73
Period size: 23 Copynumber: 2.7 Consensus size: 25
7884126 ATCTAAACCC
7884136 CAAAGCAAAAAAAAAAAATCAAAAAT
1 CAAAGC-AAAAAAAAAAATCAAAAAT
* * *
7884162 CAAAGC-TAAAAAATAAT-TAAAAT
1 CAAAGCAAAAAAAAAAATCAAAAAT
7884185 C-AAGCAAAAAAAAAAA
1 CAAAGCAAAAAAAAAAA
7884201 GGTATCATAG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
22 4 0.12
23 14 0.42
24 9 0.27
26 6 0.18
ACGTcount: A:0.74, C:0.11, G:0.05, T:0.11
Consensus pattern (25 bp):
CAAAGCAAAAAAAAAAATCAAAAAT
Found at i:7887830 original size:16 final size:16
Alignment explanation
Indices: 7887805--7887835 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7887795 TGCAGCAACA
*
7887805 ATTGTGTGTTGGTGAC
1 ATTGTATGTTGGTGAC
7887821 ATTGTATGTTGGTGA
1 ATTGTATGTTGGTGA
7887836 AAATTTAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.03, G:0.35, T:0.45
Consensus pattern (16 bp):
ATTGTATGTTGGTGAC
Found at i:7891761 original size:27 final size:27
Alignment explanation
Indices: 7891726--7891778 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
7891716 AATTTACAAC
7891726 ATGGTCATTCAACTATTCAATTTTGTT
1 ATGGTCATTCAACTATTCAATTTTGTT
7891753 ATGGTCATTCAACTATTCAATTTTGT
1 ATGGTCATTCAACTATTCAATTTTGT
7891779 CTTTTTGGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.47
Consensus pattern (27 bp):
ATGGTCATTCAACTATTCAATTTTGTT
Found at i:7891767 original size:56 final size:58
Alignment explanation
Indices: 7891647--7891768 Score: 151
Period size: 56 Copynumber: 2.1 Consensus size: 58
7891637 TTTGTCATCC
* * * *
7891647 CAACTATGAAAAATTATAAATGGTCATTCAGCTATTAGTAACTTTCTTTTATGGTCACT
1 CAACTATGAAAAATTACAAATGGTCATTCAACTATTA-CAACTTTCTGTTATGGTCACT
* *
7891706 CAACTATGAAAATTTACAACATGGTCATTCAACTATT-CAA-TTT-TGTTATGGTCATT
1 CAACTATGAAAAATTACAA-ATGGTCATTCAACTATTACAACTTTCTGTTATGGTCACT
7891762 CAACTAT
1 CAACTAT
7891769 TCAATTTTGT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
56 18 0.32
57 3 0.05
58 2 0.04
59 17 0.30
60 16 0.29
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (58 bp):
CAACTATGAAAAATTACAAATGGTCATTCAACTATTACAACTTTCTGTTATGGTCACT
Found at i:7901089 original size:28 final size:29
Alignment explanation
Indices: 7901051--7901108 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
7901041 GGTACTTAAA
*
7901051 TTTTACTTTTTTTTCCAATACGGTACCTG
1 TTTTACTTTTTTGTCCAATACGGTACCTG
*
7901080 TTTTA-TTTTTTGTCCAATTCGGTACCTG
1 TTTTACTTTTTTGTCCAATACGGTACCTG
7901108 T
1 T
7901109 ATTTGATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 22 0.81
29 5 0.19
ACGTcount: A:0.16, C:0.19, G:0.12, T:0.53
Consensus pattern (29 bp):
TTTTACTTTTTTGTCCAATACGGTACCTG
Found at i:7904212 original size:16 final size:16
Alignment explanation
Indices: 7904160--7904217 Score: 52
Period size: 16 Copynumber: 3.7 Consensus size: 16
7904150 CATGAAAAAT
7904160 AATTATAAAATGAGTA
1 AATTATAAAATGAGTA
7904176 AATTAATTATAAAT---TA
1 AATT-A-TA-AAATGAGTA
*
7904192 TATTATAAAATGAGTA
1 AATTATAAAATGAGTA
7904208 AATTA-AAAAT
1 AATTATAAAAT
7904218 TAATTATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 13
0.69 0.04 0.27
Matches are distributed among these distances:
13 4 0.12
14 2 0.06
15 6 0.18
16 15 0.44
17 1 0.03
18 2 0.06
19 4 0.12
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (16 bp):
AATTATAAAATGAGTA
Found at i:7904223 original size:32 final size:32
Alignment explanation
Indices: 7904161--7904232 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
7904151 ATGAAAAATA
**
7904161 ATTATAAAATGAGTAAATTAATTATAAATTAT
1 ATTATAAAATGAGTAAATTAAAAATAAATTAT
*
7904193 ATTATAAAATGAGTAAATTAAAAATTAATTAT
1 ATTATAAAATGAGTAAATTAAAAATAAATTAT
7904225 A--ATAAAAT
1 ATTATAAAAT
7904233 TACATTATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 7 0.19
32 30 0.81
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.38
Consensus pattern (32 bp):
ATTATAAAATGAGTAAATTAAAAATAAATTAT
Found at i:7904294 original size:8 final size:8
Alignment explanation
Indices: 7904283--7904308 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7904273 AAAAATATGA
7904283 TAATAAAT
1 TAATAAAT
7904291 TAATAAAT
1 TAATAAAT
7904299 TAATAAAT
1 TAATAAAT
7904307 TA
1 TA
7904309 TATTTTAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TAATAAAT
Found at i:7904735 original size:43 final size:42
Alignment explanation
Indices: 7904667--7904760 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 42
7904657 GGGGTATATT
* * *
7904667 AAGTTAGGTGGGGTTGAAATCTGTTGGGATGTATTTCATTTT
1 AAGTTAGGTGGGGTTGAAATATGTTGGGATGTATTTAATTTC
* *
7904709 GAGTTAGGTGGGGGTTGAGATATGTTGGGATGTATTTAATTTC
1 AAGTTAGGT-GGGGTTGAAATATGTTGGGATGTATTTAATTTC
7904752 AAGTTAGGT
1 AAGTTAGGT
7904761 CAAGGTTGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
42 8 0.18
43 37 0.82
ACGTcount: A:0.22, C:0.03, G:0.34, T:0.40
Consensus pattern (42 bp):
AAGTTAGGTGGGGTTGAAATATGTTGGGATGTATTTAATTTC
Found at i:7905724 original size:30 final size:30
Alignment explanation
Indices: 7905668--7905724 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
7905658 AAATTTCAGG
* * *
7905668 TTATTTTGGTTGGACCATTTTGAATTTGTA
1 TTATTTTGGTTCGACCATATTCAATTTGTA
7905698 TTATTTTGAGTTCGACCA-ATTCAATTT
1 TTATTTTG-GTTCGACCATATTCAATTT
7905725 AAAAAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
30 15 0.65
31 8 0.35
ACGTcount: A:0.23, C:0.11, G:0.16, T:0.51
Consensus pattern (30 bp):
TTATTTTGGTTCGACCATATTCAATTTGTA
Found at i:7910653 original size:32 final size:31
Alignment explanation
Indices: 7910587--7910654 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
7910577 AATAGTTTAT
**
7910587 ATTTTTATAATTTTTAAAAGAATTAAATTAA
1 ATTTTTATAATTTTTAAAAGAATTAAAGAAA
*
7910618 ATTTTTATCATTTTTAAAA-AGATTAAAGAATA
1 ATTTTTATAATTTTTAAAAGA-ATTAAAGAA-A
7910650 ATTTT
1 ATTTT
7910655 ATCTTTATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 1 0.03
31 25 0.78
32 6 0.19
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (31 bp):
ATTTTTATAATTTTTAAAAGAATTAAAGAAA
Found at i:7910655 original size:31 final size:32
Alignment explanation
Indices: 7910589--7910665 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 32
7910579 TAGTTTATAT
* * *
7910589 TTTTATAATTTTT-AAAAGAATTAAATTAAAT
1 TTTTATCATTTTTAAAAAGAATTAAATGAAAA
7910620 TTTTATCATTTTTAAAAAG-ATTAAA-GAATAA
1 TTTTATCATTTTTAAAAAGAATTAAATGAA-AA
7910651 TTTTATC-TTTATTAA
1 TTTTATCATTT-TTAA
7910666 TTTAAAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
30 5 0.12
31 30 0.75
32 5 0.12
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.49
Consensus pattern (32 bp):
TTTTATCATTTTTAAAAAGAATTAAATGAAAA
Found at i:7912949 original size:2 final size:2
Alignment explanation
Indices: 7912944--7912974 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7912934 ATATATATAT
7912944 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7912975 ATTGCATTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7913214 original size:19 final size:17
Alignment explanation
Indices: 7913190--7913225 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
7913180 ACATAACTTT
7913190 TAAAATTACAAACAAAAAA
1 TAAAATTA-AAA-AAAAAA
7913209 TAAAATTAAAAAAAAAA
1 TAAAATTAAAAAAAAAA
7913226 GTGAATGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 3 0.18
19 8 0.47
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.17
Consensus pattern (17 bp):
TAAAATTAAAAAAAAAA
Found at i:7919778 original size:132 final size:131
Alignment explanation
Indices: 7919521--7919788 Score: 441
Period size: 132 Copynumber: 2.0 Consensus size: 131
7919511 AAGAGTATTA
7919521 AAACAGTAAATTATACTGGTCAGCTTCCATTAATAAACATTTGTAGAATCATGAAATAGAAATAT
1 AAACAGTAAATTATACTGGTCAGCTTCCATTAATAAACATTTGTAGAATCATGAAATAGAAATAT
* * *
7919586 AATACTACACGATAAAATAAACCATTGAAAGCTTTATTTAACATATAGTTATTAAAATCAAAAGC
66 AAAACTA-ACGATAAAATAAACCATCGAAAGCTTCATTTAACATATAGTTATTAAAATCAAAAGC
7919651 AG
130 AG
*
7919653 AAACAGTAAATTATACTGGTCGGCTTCCATTAATAAACATTTGTAGAATCATGAAAATATAGAAA
1 AAACAGTAAATTATACTGGTCAGCTTCCATTAATAAACATTTGTAGAATCATG--AA-ATAGAAA
*
7919718 TATAAAACT-ACGATAAAATAAACCATCGAAAGCTTCATTTAACATATAGTTA-TAAGATCAAAA
63 TATAAAACTAACGATAAAATAAACCATCGAAAGCTTCATTTAACATATAGTTATTAAAATCAAAA
7919781 GCAG
128 GCAG
7919785 AAAC
1 AAAC
7919789 CATGATCTGA
Statistics
Matches: 128, Mismatches: 5, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
132 70 0.55
133 41 0.32
134 2 0.02
135 15 0.12
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.28
Consensus pattern (131 bp):
AAACAGTAAATTATACTGGTCAGCTTCCATTAATAAACATTTGTAGAATCATGAAATAGAAATAT
AAAACTAACGATAAAATAAACCATCGAAAGCTTCATTTAACATATAGTTATTAAAATCAAAAGCA
G
Found at i:7921596 original size:25 final size:25
Alignment explanation
Indices: 7921524--7921596 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 25
7921514 TTGCAAATTC
7921524 AAATAATATT-AAATTTTCAATATTTT
1 AAATAATATTCAAATTTT-AAT-TTTT
*
7921550 -AAT--TATTACAAAATTTTTATTTTT
1 AAATAATATT-C-AAATTTTAATTTTT
7921574 AAATAATATTCAAATTTTAATTT
1 AAATAATATTCAAATTTTAATTT
7921597 AACCGGATTC
Statistics
Matches: 39, Mismatches: 2, Indels: 13
0.72 0.04 0.24
Matches are distributed among these distances:
23 4 0.10
24 4 0.10
25 19 0.49
26 8 0.21
27 4 0.10
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (25 bp):
AAATAATATTCAAATTTTAATTTTT
Found at i:7922340 original size:8 final size:8
Alignment explanation
Indices: 7922327--7922353 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
7922317 TCAATGTATC
7922327 TCATCTTT
1 TCATCTTT
7922335 TCATCTTT
1 TCATCTTT
7922343 TCATCTTT
1 TCATCTTT
7922351 TCA
1 TCA
7922354 CGCGGGTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.15, C:0.26, G:0.00, T:0.59
Consensus pattern (8 bp):
TCATCTTT
Found at i:7923010 original size:4 final size:4
Alignment explanation
Indices: 7923003--7923041 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
7922993 CATGTGTGTG
* *
7923003 TGTA TGTA TGTA TGAA TGTA TGTA T-AA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
7923042 AGTAAAATGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
3 2 0.07
4 28 0.93
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (4 bp):
TGTA
Found at i:7923033 original size:11 final size:12
Alignment explanation
Indices: 7923006--7923039 Score: 61
Period size: 11 Copynumber: 2.9 Consensus size: 12
7922996 GTGTGTGTGT
7923006 ATGTATGTATGA
1 ATGTATGTATGA
7923018 ATGTATGTAT-A
1 ATGTATGTATGA
7923029 ATGTATGTATG
1 ATGTATGTATG
7923040 TAAGTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (12 bp):
ATGTATGTATGA
Found at i:7923050 original size:19 final size:19
Alignment explanation
Indices: 7923010--7923050 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7923000 GTGTGTATGT
* *
7923010 ATGTATGAATGTATGTATA
1 ATGTATGAATGTAAGTAAA
*
7923029 ATGTATGTATGTAAGTAAA
1 ATGTATGAATGTAAGTAAA
7923048 ATG
1 ATG
7923051 GTACTAACCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (19 bp):
ATGTATGAATGTAAGTAAA
Found at i:7927000 original size:31 final size:31
Alignment explanation
Indices: 7926964--7927030 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
7926954 CAAAATGGTT
*
7926964 ATTGAACTATTCGAAAGTTTTCATTTAAGTC
1 ATTGAACTATTCCAAAGTTTTCATTTAAGTC
* * * *
7926995 ATTGAATTGTTCCATAGTTTTTATTTAAGTC
1 ATTGAACTATTCCAAAGTTTTCATTTAAGTC
7927026 ATTGA
1 ATTGA
7927031 GTTGTTAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.46
Consensus pattern (31 bp):
ATTGAACTATTCCAAAGTTTTCATTTAAGTC
Found at i:7928837 original size:33 final size:34
Alignment explanation
Indices: 7928776--7928877 Score: 111
Period size: 35 Copynumber: 3.0 Consensus size: 34
7928766 GAATAATATC
*
7928776 TTAATATTTAATTA-ATTTTTTAATTTTTAAAAATA
1 TTAATATTT--TTATATTTTTAAATTTTTAAAAATA
* * *
7928811 TTAAT-TTTTTATATATTTTATA-TTTTAATAATT
1 TTAATATTTTTATAT-TTTTAAATTTTTAAAAATA
7928844 TTAATAATTTTTATATTTTTAAATTTTTAAAAAT
1 TTAAT-ATTTTTATATTTTTAAATTTTTAAAAAT
7928878 TAAAAAATAA
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
32 3 0.05
33 16 0.29
34 14 0.25
35 23 0.41
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (34 bp):
TTAATATTTTTATATTTTTAAATTTTTAAAAATA
Found at i:7928845 original size:26 final size:25
Alignment explanation
Indices: 7928816--7928872 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
7928806 AAATATTAAT
7928816 TTTTTAT-ATATTTTATATTTTAATAA
1 TTTTTATAAT-TTTTATATTTTAA-AA
* *
7928842 TTTTAATAATTTTTATATTTTTAAA
1 TTTTTATAATTTTTATATTTTAAAA
7928867 TTTTTA
1 TTTTTA
7928873 AAAATTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 7 0.26
26 18 0.67
27 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTTTATAATTTTTATATTTTAAAA
Found at i:7928870 original size:16 final size:16
Alignment explanation
Indices: 7928811--7928872 Score: 61
Period size: 17 Copynumber: 3.7 Consensus size: 16
7928801 TTTAAAAATA
*
7928811 TTAATTTTTTATATATT
1 TTAAATTTTTATAT-TT
* *
7928828 TTATATTTTAATAATTT
1 TTAAATTTTTAT-ATTT
*
7928845 TAATAATTTTTATATTT
1 TTA-AATTTTTATATTT
7928862 TTAAATTTTTA
1 TTAAATTTTTA
7928873 AAAATTAAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
16 8 0.22
17 19 0.53
18 9 0.25
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTAAATTTTTATATTT
Found at i:7928872 original size:8 final size:8
Alignment explanation
Indices: 7928789--7928874 Score: 55
Period size: 8 Copynumber: 10.2 Consensus size: 8
7928779 ATATTTAATT
*
7928789 AATTTTTT
1 AATTTTTA
7928797 AATTTTTAA
1 AATTTTT-A
* *
7928806 AAATATTA
1 AATTTTTA
*
7928814 ATTTTTTA
1 AATTTTTA
*
7928822 TATATTTTA
1 AAT-TTTTA
* *
7928831 TATTTTAA
1 AATTTTTA
*
7928839 TAATTTTAA
1 -AATTTTTA
7928848 TAATTTTTA
1 -AATTTTTA
*
7928857 TATTTTTA
1 AATTTTTA
7928865 AATTTTTA
1 AATTTTTA
7928873 AA
1 AA
7928875 AATTAAAAAA
Statistics
Matches: 62, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
8 34 0.55
9 28 0.45
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
AATTTTTA
Found at i:7928878 original size:26 final size:26
Alignment explanation
Indices: 7928826--7928878 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
7928816 TTTTTATATA
*
7928826 TTTTATATTTTAATAATTTTAATAAT
1 TTTTATATTTTAATAATTTTAAAAAT
*
7928852 TTTTATATTTTTAA-ATTTTTAAAAAT
1 TTTTATA-TTTTAATAATTTTAAAAAT
7928878 T
1 T
7928879 AAAAAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTTATATTTTAATAATTTTAAAAAT
Found at i:7928994 original size:16 final size:16
Alignment explanation
Indices: 7928975--7929007 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7928965 ATATATAAAT
7928975 TTAAAAATTAAAAAAA
1 TTAAAAATTAAAAAAA
7928991 TTAAAAATTAAAAAAA
1 TTAAAAATTAAAAAAA
7929007 T
1 T
7929008 AACTAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
TTAAAAATTAAAAAAA
Found at i:7929287 original size:34 final size:36
Alignment explanation
Indices: 7929234--7929300 Score: 102
Period size: 34 Copynumber: 1.9 Consensus size: 36
7929224 TTAGCTTTTC
7929234 TATAGTAATCTATATTATATTTATATAAAATTTTAA
1 TATAGTAATCTATATTATATTTATATAAAATTTTAA
* *
7929270 TATATTAATC-ATA-TATATTTATATTAAATTT
1 TATAGTAATCTATATTATATTTATATAAAATTT
7929301 AAAATTATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 17 0.59
35 3 0.10
36 9 0.31
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.52
Consensus pattern (36 bp):
TATAGTAATCTATATTATATTTATATAAAATTTTAA
Found at i:7929300 original size:11 final size:11
Alignment explanation
Indices: 7929244--7929318 Score: 55
Period size: 11 Copynumber: 6.7 Consensus size: 11
7929234 TATAGTAATC
7929244 TATATTATATT
1 TATATTATATT
* *
7929255 TATATAAAATT
1 TATATTATATT
*
7929266 T-TAATATATT
1 TATATTATATT
*
7929276 AATCATATATATT
1 TAT-AT-TATATT
*
7929289 TATATTAAATT
1 TATATTATATT
*
7929300 TAAAATTATA-T
1 T-ATATTATATT
7929311 TATATTAT
1 TATATTAT
7929319 TAATTATTTT
Statistics
Matches: 48, Mismatches: 12, Indels: 9
0.70 0.17 0.13
Matches are distributed among these distances:
10 12 0.25
11 19 0.40
12 9 0.19
13 8 0.17
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.53
Consensus pattern (11 bp):
TATATTATATT
Found at i:7929549 original size:16 final size:16
Alignment explanation
Indices: 7929528--7929564 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
7929518 AAAGGGAAAG
7929528 TAAATTATTTATTCTT
1 TAAATTATTTATTCTT
*
7929544 TAAATTATTTGTTCTT
1 TAAATTATTTATTCTT
7929560 TAAAT
1 TAAAT
7929565 GTGTTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.59
Consensus pattern (16 bp):
TAAATTATTTATTCTT
Found at i:7931399 original size:27 final size:26
Alignment explanation
Indices: 7931357--7931415 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 26
7931347 CGTTATAATT
7931357 TTTTATAATTTTATTTATATT-TTAAA
1 TTTTATAATTTTATTTA-ATTGTTAAA
7931383 TTTTA-AATTTTAGATTTAATTGTTAAA
1 TTTTATAATTTT--ATTTAATTGTTAAA
*
7931410 TATTAT
1 TTTTAT
7931416 TAAGGTTATC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
25 6 0.21
26 8 0.29
27 14 0.50
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (26 bp):
TTTTATAATTTTATTTAATTGTTAAA
Found at i:7936102 original size:31 final size:32
Alignment explanation
Indices: 7936065--7936143 Score: 99
Period size: 31 Copynumber: 2.5 Consensus size: 32
7936055 TTAACAACTC
*
7936065 AATGACTTAAATAAAAACTTTCGAATAGTT-T
1 AATGACTTAAATAAAAACTTTCGAATAGTTCA
* * * *
7936096 ACTGACTTAGATGAAAACTTTTGAATAGTTCA
1 AATGACTTAAATAAAAACTTTCGAATAGTTCA
7936128 AAT-ACTTAAATAAAAA
1 AATGACTTAAATAAAAA
7936144 GGCCCCATTC
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 37 0.95
32 2 0.05
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (32 bp):
AATGACTTAAATAAAAACTTTCGAATAGTTCA
Found at i:7939367 original size:20 final size:20
Alignment explanation
Indices: 7939340--7939381 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7939330 CTTATTTAAG
7939340 ATGTTTAAAATT-TAAAAAA
1 ATGTTTAAAATTCTAAAAAA
*
7939359 ATGTATTAAAATTCTTAAAAA
1 ATGT-TTAAAATTCTAAAAAA
7939380 AT
1 AT
7939382 AATAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 8 0.40
21 8 0.40
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (20 bp):
ATGTTTAAAATTCTAAAAAA
Found at i:7939376 original size:29 final size:28
Alignment explanation
Indices: 7939344--7939413 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 28
7939334 TTTAAGATGT
* *
7939344 TTAAAATTTA-AAAAAATGTATTAAAATTC
1 TTAAAATTAATAAAAAATGTA--AAAATTA
*
7939373 TTAAAAAATAATAAAAAATGTAAAAATTA
1 TTAA-AATTAATAAAAAATGTAAAAATTA
7939402 TTAAAATTAATA
1 TTAAAATTAATA
7939414 TAAATTTATA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 7 0.20
29 14 0.40
30 4 0.11
31 10 0.29
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (28 bp):
TTAAAATTAATAAAAAATGTAAAAATTA
Found at i:7939613 original size:33 final size:33
Alignment explanation
Indices: 7939550--7939614 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
7939540 ATTTCGCTGC
* *
7939550 TTAATTAATTTTATTTATTTATTTCCTTATTAA
1 TTAATTAATTTTATTTATTTACTTACTTATTAA
*
7939583 TTAATTAATTTTATTTATTTACTTATTTATTA
1 TTAATTAATTTTATTTATTTACTTACTTATTA
7939615 GCACTGTTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.65
Consensus pattern (33 bp):
TTAATTAATTTTATTTATTTACTTACTTATTAA
Found at i:7943339 original size:75 final size:76
Alignment explanation
Indices: 7943216--7943364 Score: 282
Period size: 75 Copynumber: 2.0 Consensus size: 76
7943206 AGCTATAAGC
7943216 TATTTTATTTCTCGAAGCGCTTTTAAGAAGTAGAAAAAGCTTCCTACTGA-TTATTTTTTTTATC
1 TATTTTATTTCTCGAAGCGCTTTTAAGAAGTAGAAAAAGCTTCCTACTGATTTATTTTTTTTATC
7943280 TATTCCTTGGT
66 TATTCCTTGGT
*
7943291 TATTTTGTTTCTCGAAGCGCTTTTAAGAAGTAGAAAAAGCTTCCTACTGATTTATTTTTTTTATC
1 TATTTTATTTCTCGAAGCGCTTTTAAGAAGTAGAAAAAGCTTCCTACTGATTTATTTTTTTTATC
7943356 TATTCCTTG
66 TATTCCTTG
7943365 ATGTGAATAG
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
75 49 0.68
76 23 0.32
ACGTcount: A:0.25, C:0.15, G:0.13, T:0.47
Consensus pattern (76 bp):
TATTTTATTTCTCGAAGCGCTTTTAAGAAGTAGAAAAAGCTTCCTACTGATTTATTTTTTTTATC
TATTCCTTGGT
Found at i:7944503 original size:36 final size:36
Alignment explanation
Indices: 7944455--7944544 Score: 135
Period size: 36 Copynumber: 2.5 Consensus size: 36
7944445 CGACCCCTCG
* **
7944455 GACTGGAGCAAACTGTCCGAAGCTATTGGCACCGCT
1 GACTGGAACAAACTGTCCGAAGCTATCAGCACCGCT
* *
7944491 GACTGGAACAAACTGTCCGAAGCTCTCAGCACTGCT
1 GACTGGAACAAACTGTCCGAAGCTATCAGCACCGCT
7944527 GACTGGAACAAACTGTCC
1 GACTGGAACAAACTGTCC
7944545 AAAGTTTTCA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.19
Consensus pattern (36 bp):
GACTGGAACAAACTGTCCGAAGCTATCAGCACCGCT
Found at i:7944556 original size:36 final size:36
Alignment explanation
Indices: 7944455--7944556 Score: 125
Period size: 36 Copynumber: 2.8 Consensus size: 36
7944445 CGACCCCTCG
* * *
7944455 GACTGGAGCAAACTGTCCGAAGCTATT-GGCACCGCT
1 GACTGGAACAAACTGTCCGAAG-TTTTCAGCACCGCT
* * *
7944491 GACTGGAACAAACTGTCCGAAGCTCTCAGCACTGCT
1 GACTGGAACAAACTGTCCGAAGTTTTCAGCACCGCT
*
7944527 GACTGGAACAAACTGTCCAAAGTTTTCAGC
1 GACTGGAACAAACTGTCCGAAGTTTTCAGC
7944557 TCTTAGCGAT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
35 1 0.02
36 55 0.98
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (36 bp):
GACTGGAACAAACTGTCCGAAGTTTTCAGCACCGCT
Found at i:7945801 original size:26 final size:26
Alignment explanation
Indices: 7945772--7945858 Score: 61
Period size: 26 Copynumber: 3.2 Consensus size: 26
7945762 AAATAATTGC
7945772 TAGGGGCTATGTATGTGAACTGTTGG
1 TAGGGGCTATGTATGTGAACTGTTGG
* * * *
7945798 TAGGATGTCTCGCCTGTAAAGTGAA-T-TATGC
1 TAGG--GGCT---ATGT-ATGTGAACTGT-TGG
7945829 TAGGGGCTATGTATGTGAACTGTTGG
1 TAGGGGCTATGTATGTGAACTGTTGG
7945855 TAGG
1 TAGG
7945859 ATGTCTCGCC
Statistics
Matches: 44, Mismatches: 8, Indels: 18
0.63 0.11 0.26
Matches are distributed among these distances:
25 6 0.14
26 14 0.32
27 1 0.02
28 3 0.07
29 3 0.07
30 1 0.02
31 10 0.23
32 6 0.14
ACGTcount: A:0.22, C:0.10, G:0.34, T:0.33
Consensus pattern (26 bp):
TAGGGGCTATGTATGTGAACTGTTGG
Found at i:7945857 original size:57 final size:57
Alignment explanation
Indices: 7945769--7945883 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
7945759 ATGAAATAAT
7945769 TGCTAGGGGCTATGTATGTGAACTGTTGGTAGGATGTCTCGCCTGTAAAGTGAATTA
1 TGCTAGGGGCTATGTATGTGAACTGTTGGTAGGATGTCTCGCCTGTAAAGTGAATTA
7945826 TGCTAGGGGCTATGTATGTGAACTGTTGGTAGGATGTCTCGCCTGTAAAGTGAATTA
1 TGCTAGGGGCTATGTATGTGAACTGTTGGTAGGATGTCTCGCCTGTAAAGTGAATTA
7945883 T
1 T
7945884 TTTTTCATTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.23, C:0.12, G:0.31, T:0.34
Consensus pattern (57 bp):
TGCTAGGGGCTATGTATGTGAACTGTTGGTAGGATGTCTCGCCTGTAAAGTGAATTA
Found at i:7946938 original size:28 final size:28
Alignment explanation
Indices: 7946897--7946957 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
7946887 CTAGTAAATT
*
7946897 TAATTTACAGAAATATTAATTAATATTA
1 TAATTTACAGAAATATTAAATAATATTA
*
7946925 TAATTTACATAAATATTAAATAATATTA
1 TAATTTACAGAAATATTAAATAATATTA
7946953 -AATTT
1 TAATTT
7946958 TGAAAGTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 5 0.16
28 26 0.84
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (28 bp):
TAATTTACAGAAATATTAAATAATATTA
Found at i:7949466 original size:23 final size:23
Alignment explanation
Indices: 7949432--7949483 Score: 86
Period size: 23 Copynumber: 2.2 Consensus size: 23
7949422 TTTTATTAAT
*
7949432 TTAAATATAAAATATTCTTTACA
1 TTAAATACAAAATATTCTTTACA
7949455 TTAAATACAAAATATTCTTTACA
1 TTAAATACAAAATATTCTTTACA
7949478 TATAAA
1 T-TAAA
7949484 AAGTTAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.85
24 4 0.15
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (23 bp):
TTAAATACAAAATATTCTTTACA
Found at i:7954288 original size:19 final size:20
Alignment explanation
Indices: 7954254--7954292 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
7954244 ATTAATATAC
7954254 GTTAAATATTTGAGATTTAT
1 GTTAAATATTTGAGATTTAT
*
7954274 GTTAAA-ATTTTAGATTTAT
1 GTTAAATATTTGAGATTTAT
7954293 CGTAACAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (20 bp):
GTTAAATATTTGAGATTTAT
Found at i:7979197 original size:32 final size:31
Alignment explanation
Indices: 7979141--7979201 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
7979131 AACCAACTTG
*
7979141 AAAATTTTAAAACCTCCAATGACTCAGACCCA
1 AAAATTTTAAAACCTCCAAGGACTC-GACCCA
**
7979173 AAAATTTTAAAACCTTGAAGGACTCGACC
1 AAAATTTTAAAACCTCCAAGGACTCGACC
7979202 TGCAATTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 4 0.15
32 22 0.85
ACGTcount: A:0.43, C:0.25, G:0.10, T:0.23
Consensus pattern (31 bp):
AAAATTTTAAAACCTCCAAGGACTCGACCCA
Found at i:7980990 original size:3 final size:3
Alignment explanation
Indices: 7980984--7981016 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
7980974 ATCTACTCAG
7980984 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
7981017 TAACTGTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:7982454 original size:36 final size:35
Alignment explanation
Indices: 7982391--7982465 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 35
7982381 AATTAATAAT
* * *
7982391 AAAA-TAATAACTATATAATATCTAAACAATAACA
1 AAAACTAATAACAATATAATATCGAAACAACAACA
7982425 ACAAACTAATAACAATATAATAGT-GAAACAACAACA
1 A-AAACTAATAACAATATAATA-TCGAAACAACAACA
7982461 AAAAC
1 AAAAC
7982466 AACTGATTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 1 0.03
35 7 0.20
36 26 0.74
37 1 0.03
ACGTcount: A:0.63, C:0.15, G:0.03, T:0.20
Consensus pattern (35 bp):
AAAACTAATAACAATATAATATCGAAACAACAACA
Found at i:7984158 original size:19 final size:19
Alignment explanation
Indices: 7984134--7984173 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
7984124 AGTCAATCCC
7984134 TATCTTTATTTGTGAAGTT
1 TATCTTTATTTGTGAAGTT
7984153 TATCTTTATTTGTGAAGTT
1 TATCTTTATTTGTGAAGTT
7984172 TA
1 TA
7984174 AAATAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.23, C:0.05, G:0.15, T:0.57
Consensus pattern (19 bp):
TATCTTTATTTGTGAAGTT
Found at i:7985169 original size:22 final size:22
Alignment explanation
Indices: 7985143--7985187 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7985133 ATTAGGGTTA
*
7985143 GGAATCTTGTATGAAATTGAAT
1 GGAATCTTCTATGAAATTGAAT
* *
7985165 GGAATTTTCTATGAAGTTGAAT
1 GGAATCTTCTATGAAATTGAAT
7985187 G
1 G
7985188 CTTTGCTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.38
Consensus pattern (22 bp):
GGAATCTTCTATGAAATTGAAT
Found at i:7987225 original size:17 final size:17
Alignment explanation
Indices: 7987205--7987238 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
7987195 ATATTTTCTT
7987205 CTTCTA-TATAATATACA
1 CTTCTATTAT-ATATACA
7987222 CTTCTATTATATATACA
1 CTTCTATTATATATACA
7987239 ACATGTAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (17 bp):
CTTCTATTATATATACA
Found at i:7988317 original size:27 final size:27
Alignment explanation
Indices: 7988275--7988327 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
7988265 CGTACTTTCA
* *
7988275 TTATTGAAAATAATTTTTTATTTTTAT
1 TTATTGAAAATAATTTCTAATTTTTAT
* *
7988302 TTATTGAACATGATTTCTAATTTTTA
1 TTATTGAAAATAATTTCTAATTTTTA
7988328 AAATAAAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.32, C:0.04, G:0.06, T:0.58
Consensus pattern (27 bp):
TTATTGAAAATAATTTCTAATTTTTAT
Found at i:7988376 original size:32 final size:33
Alignment explanation
Indices: 7988321--7988391 Score: 94
Period size: 32 Copynumber: 2.2 Consensus size: 33
7988311 ATGATTTCTA
7988321 ATTTTTAAAATAAAATAGAAAATAAAAATA-AT
1 ATTTTTAAAATAAAATAGAAAATAAAAATAGAT
*
7988353 -TTTTTGAAATAAAAATA-ACAAATAAAAATAGAT
1 ATTTTTAAAAT-AAAATAGA-AAATAAAAATAGAT
7988386 ATTTTT
1 ATTTTT
7988392 TCGGAAGCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
31 10 0.29
32 17 0.50
33 2 0.06
34 5 0.15
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.35
Consensus pattern (33 bp):
ATTTTTAAAATAAAATAGAAAATAAAAATAGAT
Found at i:7989558 original size:58 final size:59
Alignment explanation
Indices: 7989461--7989608 Score: 185
Period size: 58 Copynumber: 2.5 Consensus size: 59
7989451 TTAGGATCTG
* *
7989461 AACTTTTTTCTGTCCAAGTTAGGCCCTAAACTGGACAATTGTT-CTCACATTGGGGCTCG
1 AACTTTTTTTTGTCCAAGTTAGGCCCTAAACTGGACAATTGTTCCT-ACATTGGGGCTCA
* *
7989520 AA-TTTTTTTTGTCCAAGTTAGGCCCTAAACTTGG-CAATTGTTCCTATATTGGGGCTTA
1 AACTTTTTTTTGTCCAAGTTAGGCCCTAAAC-TGGACAATTGTTCCTACATTGGGGCTCA
* *
7989578 AACTTTTTTGTTTGTCCAAATTAGTCCCTAA
1 AAC-TTTTT-TTTGTCCAAGTTAGGCCCTAA
7989609 TATTTCCTTG
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
58 47 0.60
59 7 0.09
60 5 0.06
61 19 0.24
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (59 bp):
AACTTTTTTTTGTCCAAGTTAGGCCCTAAACTGGACAATTGTTCCTACATTGGGGCTCA
Found at i:7993126 original size:10 final size:11
Alignment explanation
Indices: 7993110--7993139 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
7993100 GATAGTGAGA
7993110 AAAAATAAAAT
1 AAAAATAAAAT
7993121 -AAAATAAAAT
1 AAAAATAAAAT
7993131 AAAAATAAA
1 AAAAATAAA
7993140 GAACACACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:7997532 original size:10 final size:11
Alignment explanation
Indices: 7997516--7997545 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
7997506 CAATTTGAGA
7997516 AAAAATAAAAT
1 AAAAATAAAAT
7997527 -AAAATAAAAT
1 AAAAATAAAAT
7997537 AAAAATAAA
1 AAAAATAAA
7997546 GAACACACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:8005687 original size:16 final size:17
Alignment explanation
Indices: 8005656--8005687 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8005646 ATAAAAAACT
8005656 ATTCGTACACTATATAG
1 ATTCGTACACTATATAG
8005673 ATTCGTACA-TATATA
1 ATTCGTACACTATATA
8005688 ATGATGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (17 bp):
ATTCGTACACTATATAG
Found at i:8005759 original size:26 final size:25
Alignment explanation
Indices: 8005718--8005769 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
8005708 GGTATTAGAA
*
8005718 ATATATATACAATATTACAATATAT
1 ATATATATACAATATTAAAATATAT
*
8005743 ATATATCTAACAATATTAAAATATAT
1 ATATATAT-ACAATATTAAAATATAT
8005769 A
1 A
8005770 CATAACAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (25 bp):
ATATATATACAATATTAAAATATAT
Found at i:8006007 original size:18 final size:19
Alignment explanation
Indices: 8005986--8006024 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
8005976 CATTAGCTAT
8005986 AATAATACATT-G-ATAATA
1 AATAATA-ATTGGAATAATA
8006004 AATAATAATTGGAATAATA
1 AATAATAATTGGAATAATA
8006023 AA
1 AA
8006025 CAGTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.16
18 8 0.42
19 8 0.42
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.31
Consensus pattern (19 bp):
AATAATAATTGGAATAATA
Found at i:8008428 original size:25 final size:27
Alignment explanation
Indices: 8008391--8008440 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
8008381 TCAAACATGC
8008391 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
8008417 ATTTCGGT-AATTTATCTCCTAGGG
1 ATTTAGGTCAATTTAACTCCTAGGG
8008441 TAAAACTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:8009960 original size:26 final size:26
Alignment explanation
Indices: 8009924--8010007 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
8009914 CATGAAATTC
8009924 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8009950 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
8009976 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
8010002 TTATCA
1 TTATCA
8010008 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:8011780 original size:25 final size:25
Alignment explanation
Indices: 8011752--8011803 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
8011742 AGGTAGTAGT
8011752 TTGAGTTTAGAAT-TCAAAATTTATA
1 TTGAGTTTAGAATATC-AAATTTATA
* *
8011777 TTGAGTTTTGAATATCGAATTTATA
1 TTGAGTTTAGAATATCAAATTTATA
8011802 TT
1 TT
8011804 TAAATAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.48
Consensus pattern (25 bp):
TTGAGTTTAGAATATCAAATTTATA
Found at i:8013376 original size:21 final size:21
Alignment explanation
Indices: 8013337--8013377 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8013327 TCAATTTTAC
*
8013337 ATAAATTTAACTGATATAATA
1 ATAAATTTAAATGATATAATA
8013358 ATAAATTTAAAT-ATCATAAT
1 ATAAATTTAAATGAT-ATAAT
8013378 TTACACATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (21 bp):
ATAAATTTAAATGATATAATA
Found at i:8013847 original size:25 final size:25
Alignment explanation
Indices: 8013817--8013867 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
8013807 TTACATTAAC
8013817 AATAATGCACATATCAATTGAATTA
1 AATAATGCACATATCAATTGAATTA
8013842 AATAATGCACATATCAATTGAATTA
1 AATAATGCACATATCAATTGAATTA
8013867 A
1 A
8013868 GATTTAATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.31
Consensus pattern (25 bp):
AATAATGCACATATCAATTGAATTA
Found at i:8018362 original size:2 final size:2
Alignment explanation
Indices: 8018302--8018348 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
8018292 CATTGAAACC
*
8018302 CA CA -A CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
8018343 CA CA CA
1 CA CA CA
8018349 TATATATACA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.51, C:0.47, G:0.00, T:0.02
Consensus pattern (2 bp):
CA
Found at i:8021125 original size:2 final size:2
Alignment explanation
Indices: 8021114--8021147 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
8021104 GCTACTGCTA
8021114 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8021148 CACTGCAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8021412 original size:29 final size:29
Alignment explanation
Indices: 8021349--8021412 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
8021339 GAACTGATTA
* **
8021349 TATATTTTTTAATATTTATTTTACTTTTAT
1 TATA-TTTTTAATATTTATTTTAATTAAAT
*
8021379 GATATTTTTAATAATTTA-TTTAATTAAAT
1 TATATTTTTAAT-ATTTATTTTAATTAAAT
8021408 TATAT
1 TATAT
8021413 AAATTGATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
29 20 0.71
30 8 0.29
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (29 bp):
TATATTTTTAATATTTATTTTAATTAAAT
Found at i:8022067 original size:16 final size:17
Alignment explanation
Indices: 8022037--8022070 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
8022027 CATACTATTT
8022037 TTTTATAATTATTTTAA
1 TTTTATAATTATTTTAA
*
8022054 TTTTA-AATTTTTTTAA
1 TTTTATAATTATTTTAA
8022070 T
1 T
8022071 ATTTTTATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTATAATTATTTTAA
Found at i:8023755 original size:23 final size:23
Alignment explanation
Indices: 8023729--8023778 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
8023719 CATTCGTAAC
8023729 TTATATTATATAAATAA-AATTAT
1 TTATATTATAT-AATAATAATTAT
* *
8023752 TTATATTGTATGATAATAATTAT
1 TTATATTATATAATAATAATTAT
8023775 TTAT
1 TTAT
8023779 TTGGTGAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (23 bp):
TTATATTATATAATAATAATTAT
Found at i:8024407 original size:3 final size:3
Alignment explanation
Indices: 8024390--8024431 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
8024380 ATTTAATGAA
8024390 AAT AAT GAA- AAT AAT AAT AA- AA- AAT AAT AAT AAT AAT AAT AA
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8024432 ATAAATAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 6 0.17
3 28 0.78
4 2 0.06
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:8024415 original size:13 final size:13
Alignment explanation
Indices: 8024397--8024443 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
8024387 GAAAATAATG
8024397 AAAATAATAATAA
1 AAAATAATAATAA
8024410 AAAATAATAAT-A
1 AAAATAATAATAA
*
8024422 ATAATAATAAATAA
1 AAAATAAT-AATAA
8024436 ATAAATAA
1 A-AAATAA
8024444 AAGTAGGCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 8 0.28
13 14 0.48
14 2 0.07
15 5 0.17
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
AAAATAATAATAA
Found at i:8024416 original size:22 final size:22
Alignment explanation
Indices: 8024388--8024439 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 22
8024378 GAATTTAATG
8024388 AAAATAATGAA-AATAATAATAA
1 AAAATAAT-AATAATAATAATAA
8024410 AAAATAATAATAATAATAATAA
1 AAAATAATAATAATAATAATAA
8024432 ATAAATAA
1 A-AAATAA
8024440 ATAAAAGTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 2 0.07
22 20 0.71
23 6 0.21
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (22 bp):
AAAATAATAATAATAATAATAA
Found at i:8024423 original size:19 final size:19
Alignment explanation
Indices: 8024399--8024435 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8024389 AAATAATGAA
8024399 AATAATAATAAAAAATAAT
1 AATAATAATAAAAAATAAT
*
8024418 AATAATAATAATAAATAA
1 AATAATAATAAAAAATAA
8024436 ATAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (19 bp):
AATAATAATAAAAAATAAT
Found at i:8035376 original size:2 final size:2
Alignment explanation
Indices: 8035332--8035357 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8035322 ACAAGTTATT
8035332 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
8035358 CACGTTCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8038048 original size:131 final size:132
Alignment explanation
Indices: 8037854--8038213 Score: 420
Period size: 131 Copynumber: 2.7 Consensus size: 132
8037844 CTGAGTTCAA
* * ** **
8037854 TTTATTGTGAATGAAAAAAATTAAGTCCGTAGAATTTACCTCTGTTTAAAAGTTCAATTCAACTC
1 TTTATTGTGAAT-AAAAAAACTACGTTAGTAGAATTTACCTCTGTTTAAAAGTTCAACACAACTC
* * * * * *
8037919 AATTTTAGATTTAGTTGAAATCTAATGTAATTATTGAAGGATTTTATCAAAATGAG-AAAA-AC-
65 AACTTAAGATTTAGTTAAAATCTAATGTAATTATTGAAAGATTTGACCAAAATGAGAAAAATACT
8037981 ACT
130 ACT
* * * *
8037984 TTTATTGTGAATAAAAAAAACTACGTTAGTAGAATTTTACCTCTATTTAAAAGTCCACCCCAACT
1 TTTATTGTGAAT-AAAAAAACTACGTTAGTAGAA-TTTACCTCTGTTTAAAAGTTCAACACAACT
* *
8038049 AAACTCAAGATTTAGTTAAAATCTAATGTAATTATTGAAAGATTTGACCAAAATGAGAAAAATAC
64 CAACTTAAGATTTAGTTAAAATCTAATGTAATTATTGAAAGATTTGACCAAAATGAGAAAAATAC
*
8038114 TTTTGTCT
129 ---T-ACT
* * *
8038122 TTTATTGTGAATGAAAAAACTACGTTGGTAGAACTTTACCTTTGTTTAAAAGTTCAACACAACTC
1 TTTATTGTGAATAAAAAAACTACGTTAGTAGAA-TTTACCTCTGTTTAAAAGTTCAACACAACTC
*
8038187 AACTTGAGATTTAGTTAAAATCTAATG
65 AACTTAAGATTTAGTTAAAATCTAATG
8038214 ACCAAAATGA
Statistics
Matches: 192, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
130 29 0.15
131 74 0.39
132 4 0.02
133 2 0.01
137 69 0.36
138 14 0.07
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (132 bp):
TTTATTGTGAATAAAAAAACTACGTTAGTAGAATTTACCTCTGTTTAAAAGTTCAACACAACTCA
ACTTAAGATTTAGTTAAAATCTAATGTAATTATTGAAAGATTTGACCAAAATGAGAAAAATACTA
CT
Found at i:8038197 original size:137 final size:129
Alignment explanation
Indices: 8037854--8038333 Score: 417
Period size: 120 Copynumber: 3.7 Consensus size: 129
8037844 CTGAGTTCAA
* * ** **
8037854 TTTATTGTGAATGAAAAAAATTAAGTCCGTAGAATTTACCTCTGTTTAAAAGTTCAATTCAACTC
1 TTTATTGTGAATG-AAAAAACTACGTTAGTAGAATTTACCTCTGTTTAAAAGTTCAACACAACTC
* * * * * *
8037919 AATTTTAGATTTAGTTGAAATCTAATGTAATTATTGAAGGATTTTATCAAAATGAGAAAAACACT
65 AACTTAAGATTTAGTTAAAATCTAATGTAATTATTGAAAGATTTGACCAAAATGAGAAAAACACT
* * * * *
8037984 TTTATTGTGAATAAAAAAAACTACGTTAGTAGAATTTTACCTCTATTTAAAAGTCCACCCCAACT
1 TTTATTGTGAAT-GAAAAAACTACGTTAGTAGAA-TTTACCTCTGTTTAAAAGTTCAACACAACT
* *
8038049 AAACTCAAGATTTAGTTAAAATCTAATGTAATTATTGAAAGATTTGACCAAAATGAGAAAAATAC
64 CAACTTAAGATTTAGTTAAAATCTAATGTAATTATTGAAAGATTTGACCAAAATGAG-AAAA-AC
*
8038114 TTTTGTCT
127 -----ACT
* *
8038122 TTTATTGTGAATGAAAAAACTACGTTGGTAGAACTTTACCTTTGTTTAAAAGTTCAACACAACTC
1 TTTATTGTGAATGAAAAAACTACGTTAGTAGAA-TTTACCTCTGTTTAAAAGTTCAACACAACTC
* ** * ***** *
8038187 AACTTGAGATTTAGTTAAAATCTAATG--ACCA---AAATGA---GA--AAAA-CACTTTTA-TC
65 AACTTAAGATTTAGTTAAAATCTAATGTAATTATTGAAA-GATTTGACCAAAATGAGAAAAACAC
8038240 T
129 T
* * *
8038241 TTTATTGTGAATGGAAAAAACTACGTTGGTAGAACTTTACCTCTGTTTAAAAGTCCAACTCAACT
1 TTTATTGTGAAT-GAAAAAACTACGTTAGTAGAA-TTTACCTCTGTTTAAAAGTTCAACACAACT
* *
8038306 CAACTCAAGATTTAGTTAAAATCCAATG
64 CAACTTAAGATTTAGTTAAAATCTAATG
8038334 ACCAAAATGA
Statistics
Matches: 295, Mismatches: 44, Indels: 32
0.80 0.12 0.09
Matches are distributed among these distances:
119 15 0.05
120 74 0.25
125 1 0.00
127 1 0.00
128 4 0.01
130 30 0.10
131 74 0.25
132 7 0.02
133 4 0.01
135 2 0.01
137 69 0.23
138 14 0.05
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (129 bp):
TTTATTGTGAATGAAAAAACTACGTTAGTAGAATTTACCTCTGTTTAAAAGTTCAACACAACTCA
ACTTAAGATTTAGTTAAAATCTAATGTAATTATTGAAAGATTTGACCAAAATGAGAAAAACACT
Found at i:8038305 original size:120 final size:120
Alignment explanation
Indices: 8038093--8038453 Score: 546
Period size: 120 Copynumber: 3.0 Consensus size: 120
8038083 TTGAAAGATT
* *
8038093 TGACCAAAATGAGAAAAATACTTTTGTCTTTTATTGTGAAT-GAAAAAACTACGTTGGTAGAACT
1 TGACCAAAATGAGAAAAACACTTTTATCTTTTATTGTGAATGGAAAAAACTACGTTGGTAGAACT
* * ** *
8038157 TTACCTTTGTTTAAAAGTTCAACACAACTCAACTTGAGATTTAGTTAAAATCTAA
66 TTACCTTTGTTTAAAAGTCCAACTCAACTCAACTCAAGATTTAGTTAAAATCCAA
8038212 TGACCAAAATGAGAAAAACACTTTTATCTTTTATTGTGAATGGAAAAAACTACGTTGGTAGAACT
1 TGACCAAAATGAGAAAAACACTTTTATCTTTTATTGTGAATGGAAAAAACTACGTTGGTAGAACT
*
8038277 TTACCTCTGTTTAAAAGTCCAACTCAACTCAACTCAAGATTTAGTTAAAATCCAA
66 TTACCTTTGTTTAAAAGTCCAACTCAACTCAACTCAAGATTTAGTTAAAATCCAA
* * * *
8038332 TGACCAAAATGAGAAAAACACTTTTATCTTTTATTGTGCATGGAAAAAATTATGTTAGTAGAACT
1 TGACCAAAATGAGAAAAACACTTTTATCTTTTATTGTGAATGGAAAAAACTACGTTGGTAGAACT
* * * * *
8038397 TTACCTTTATTTAAAAATCCAA-TCCAACTCAACTCAAAATTTAATTGAAATCCAA
66 TTACCTTTGTTTAAAAGTCCAACT-CAACTCAACTCAAGATTTAGTTAAAATCCAA
8038452 TG
1 TG
8038454 TAATTATTAA
Statistics
Matches: 222, Mismatches: 18, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
119 40 0.18
120 182 0.82
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.33
Consensus pattern (120 bp):
TGACCAAAATGAGAAAAACACTTTTATCTTTTATTGTGAATGGAAAAAACTACGTTGGTAGAACT
TTACCTTTGTTTAAAAGTCCAACTCAACTCAACTCAAGATTTAGTTAAAATCCAA
Found at i:8039165 original size:16 final size:17
Alignment explanation
Indices: 8039124--8039165 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
8039114 TGATTGAATT
**
8039124 AATTAAAAATTATTTAA
1 AATTAAAAATTAAATAA
*
8039141 AATTTAAAA-TAAATAA
1 AATTAAAAATTAAATAA
8039157 AATTAAAAA
1 AATTAAAAA
8039166 ATTTGATTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AATTAAAAATTAAATAA
Found at i:8043010 original size:130 final size:130
Alignment explanation
Indices: 8042744--8043281 Score: 622
Period size: 129 Copynumber: 4.2 Consensus size: 130
8042734 TTTTAAAGCT
*
8042744 AATTCATGAATGAAATTATTTTTTTTCAAAAAGGGATTTCTATTGTTTTATCATATATTTGTTTT
1 AATTCATGAATGAAATTATTTTTTTTCAAAAAGGGATTTCTCTTGTTTTATCATATATTTGTTTT
* *
8042809 GAATTTCATGAATG-ATT-TTTTTAAAAAGGGTTCTCTCTTTTTTTTCTTCATATATTTGCTTTG
66 GAAATTCATGAATGAATTATTTTTAAAAAGGGTTTTCTCTTTTTTTTCTTCATATATTTG-TTTG
8042872 A
130 A
*
8042873 GATTCATGAATGAAATTATTTTTTTTCAAAAAGGGATTTCTCTTGTTTTATCATATATTTGTTTT
1 AATTCATGAATGAAATTATTTTTTTTCAAAAAGGGATTTCTCTTGTTTTATCATATATTTGTTTT
* *
8042938 GAATTTCATGAATG-ATT-TTTTT-GAAAGGGTTTTCTCTCTCTTTTTTCTTCATATATTTGCTT
66 GAAATTCATGAATGAATTATTTTTAAAAAGGGTTTTCTCT-T-TTTTTTCTTCATATATTTG-TT
8043000 TGA
128 TGA
* *** * * *
8043003 GATTCATGAATGAAATTA-TTTTTAAAAAAAATGGTTTTCTCTTGTTTTTTCATAT-TTTGTTTT
1 AATTCATGAATGAAATTATTTTTTTTCAAAAAGGGATTTCTCTTGTTTTATCATATATTTGTTTT
* *** * * *
8043066 AAAATTCATGAATGAAATTATTAAAAAAAAAGGTTTTCTCTTGTTTTTGTTCATATATTTGTTCT
66 GAAATTCATGAATG-AATTATTTTTAAAAAGGGTTTTCTCTTTTTTTTCTTCATATATTTGTT-T
8043131 GA
129 GA
** * *
8043133 AATTCATGAAT-AAA--A---TTACT-AAAAAGAGAGTTTTCTCTTGTTTT-TCCATATATTTGC
1 AATTCATGAATGAAATTATTTTTTTTCAAAAAG-G-GATTTCTCTTGTTTTAT-CATATATTTGT
8043190 TTTGAAATTCATGAATGAAATTATTTTTACAAAAAGGGTTTTCTCTTGTTTTTT-TTCATATATT
63 TTTGAAATTCATGAATG-AATTATTTTT--AAAAAGGGTTTTCTCTT-TTTTTTCTTCATATATT
8043254 TGTTTAGA
124 TGTTT-GA
8043262 AATTCATGAATGAAATTATT
1 AATTCATGAATGAAATTATT
8043282 AAAATAATGG
Statistics
Matches: 358, Mismatches: 31, Indels: 35
0.84 0.07 0.08
Matches are distributed among these distances:
124 5 0.01
125 4 0.01
126 20 0.06
127 29 0.08
128 34 0.09
129 165 0.46
130 84 0.23
131 3 0.01
132 14 0.04
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.50
Consensus pattern (130 bp):
AATTCATGAATGAAATTATTTTTTTTCAAAAAGGGATTTCTCTTGTTTTATCATATATTTGTTTT
GAAATTCATGAATGAATTATTTTTAAAAAGGGTTTTCTCTTTTTTTTCTTCATATATTTGTTTGA
Found at i:8046981 original size:3 final size:3
Alignment explanation
Indices: 8046973--8047010 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8046963 TGCCATGGAT
8046973 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8047011 GTAACTTTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8048451 original size:30 final size:30
Alignment explanation
Indices: 8048415--8048477 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
8048405 ACTTAACAAG
* *
8048415 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAACAAAAACAAAATTAA
*
8048445 CAAATGTCTTTAAAACAAAAACAAAATTAA
1 CAAATGTCTCTAAAACAAAAACAAAATTAA
8048475 CAA
1 CAA
8048478 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.59, C:0.14, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGTCTCTAAAACAAAAACAAAATTAA
Found at i:8049664 original size:9 final size:9
Alignment explanation
Indices: 8049645--8049698 Score: 58
Period size: 9 Copynumber: 5.9 Consensus size: 9
8049635 TTGGATGAGG
8049645 TATATATTTT
1 TATA-ATTTT
8049655 TATAATTTT
1 TATAATTTT
8049664 TA-AATATATT
1 TATAAT-T-TT
8049674 T-TAATTTT
1 TATAATTTT
8049682 TATAATTTT
1 TATAATTTT
*
8049691 TAAAATTT
1 TATAATTT
8049699 AAAGATGTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
8 6 0.15
9 23 0.59
10 10 0.26
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
TATAATTTT
Found at i:8049801 original size:10 final size:10
Alignment explanation
Indices: 8049788--8049822 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
8049778 AATTTTAATG
8049788 TTTTTACTAA
1 TTTTTACTAA
8049798 TTTTTAC-AA
1 TTTTTACTAA
*
8049807 TTTTTAGTAA
1 TTTTTACTAA
8049817 TTTTTA
1 TTTTTA
8049823 ATATTCTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.63
Consensus pattern (10 bp):
TTTTTACTAA
Found at i:8049802 original size:19 final size:19
Alignment explanation
Indices: 8049766--8049827 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
8049756 TTTTTCTTAT
* *
8049766 ATATTTTTACAAAATTTTA
1 ATATTTTTACTAATTTTTA
*
8049785 ATGTTTTTACTAATTTTTA
1 ATATTTTTACTAATTTTTA
*
8049804 CA-ATTTTTAGTAATTTTTA
1 -ATATTTTTACTAATTTTTA
8049823 ATATT
1 ATATT
8049828 CTAAAATAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 1 0.03
19 34 0.94
20 1 0.03
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (19 bp):
ATATTTTTACTAATTTTTA
Found at i:8055677 original size:26 final size:26
Alignment explanation
Indices: 8055648--8055700 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
8055638 TCTTGAGAGT
8055648 TAGCCTCTTCTCCAAATCATCTTCGA
1 TAGCCTCTTCTCCAAATCATCTTCGA
8055674 TAGCCTCTTCTCCAAATCATCTTCGA
1 TAGCCTCTTCTCCAAATCATCTTCGA
8055700 T
1 T
8055701 GACAGTTGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.34, G:0.08, T:0.36
Consensus pattern (26 bp):
TAGCCTCTTCTCCAAATCATCTTCGA
Found at i:8057332 original size:9 final size:10
Alignment explanation
Indices: 8057315--8057341 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
8057305 CTAGTGGTAA
8057315 CTAAAAAAAG
1 CTAAAAAAAG
8057325 CTAAAAAAAG
1 CTAAAAAAAG
8057335 CTAAAAA
1 CTAAAAA
8057342 TTAGGAGCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.70, C:0.11, G:0.07, T:0.11
Consensus pattern (10 bp):
CTAAAAAAAG
Found at i:8067817 original size:47 final size:46
Alignment explanation
Indices: 8067766--8067876 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 46
8067756 GACATTGAGT
*
8067766 CGATG-AGACACTATGTGTCGACTAT-TGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGT--ACTATATGTTAAAGTTCCAGATTTGTTC
* *
8067813 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCAGATTTGTTC
1 CGATGAAGCACTATGTGTACTAT-ATGTTAAAGTTCCAGATTTGTTC
*
8067860 CGATGAAGTACTATGTG
1 CGATGAAGCACTATGTG
8067877 CTTATCCCGG
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
45 5 0.09
47 50 0.88
48 2 0.04
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (46 bp):
CGATGAAGCACTATGTGTACTATATGTTAAAGTTCCAGATTTGTTC
Found at i:8072134 original size:2 final size:2
Alignment explanation
Indices: 8072127--8072151 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8072117 TGCATGTCAT
8072127 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8072152 TGAAACAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8078591 original size:11 final size:11
Alignment explanation
Indices: 8078571--8078624 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
8078561 TTAGAATATA
*
8078571 CCCATTCCTTG
1 CCCATACCTTG
8078582 CCCATACCTTG
1 CCCATACCTTG
*
8078593 CCCATACCTTT
1 CCCATACCTTG
*
8078604 CCCATACC-TA
1 CCCATACCTTG
8078614 CCCATACCTTG
1 CCCATACCTTG
8078625 GAAAGGTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.19, C:0.46, G:0.06, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:8079183 original size:18 final size:18
Alignment explanation
Indices: 8079160--8079233 Score: 94
Period size: 18 Copynumber: 4.1 Consensus size: 18
8079150 CCGTTTACGA
8079160 TACTATTCACGTATACAG
1 TACTATTCACGTATACAG
*
8079178 TACTATTCATGTATACAG
1 TACTATTCACGTATACAG
* *
8079196 GACTATTCACGTATACGG
1 TACTATTCACGTATACAG
* * *
8079214 TATTGTTCACGTACACAG
1 TACTATTCACGTATACAG
8079232 TA
1 TA
8079234 GTTGGGATTG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (18 bp):
TACTATTCACGTATACAG
Found at i:8083298 original size:11 final size:11
Alignment explanation
Indices: 8083284--8083329 Score: 67
Period size: 11 Copynumber: 4.3 Consensus size: 11
8083274 TACCCATTCA
8083284 TTGCCCATACC
1 TTGCCCATACC
8083295 TTGCCCATACC
1 TTGCCCATACC
*
8083306 TTTCCCATACC
1 TTGCCCATACC
*
8083317 -TACCCATACC
1 TTGCCCATACC
8083327 TTG
1 TTG
8083330 GAAAGGTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
10 9 0.29
11 22 0.71
ACGTcount: A:0.20, C:0.43, G:0.07, T:0.30
Consensus pattern (11 bp):
TTGCCCATACC
Found at i:8083324 original size:21 final size:22
Alignment explanation
Indices: 8083287--8083328 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
8083277 CCATTCATTG
*
8083287 CCCATACCTTGCCCATACCTTT
1 CCCATACCTTACCCATACCTTT
8083309 CCCATACC-TACCCATACCTT
1 CCCATACCTTACCCATACCTT
8083329 GGAAAGGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.21, C:0.48, G:0.02, T:0.29
Consensus pattern (22 bp):
CCCATACCTTACCCATACCTTT
Found at i:8086661 original size:13 final size:13
Alignment explanation
Indices: 8086643--8086669 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8086633 TATAAATACT
8086643 CTGCAATTTTGAG
1 CTGCAATTTTGAG
8086656 CTGCAATTTTGAG
1 CTGCAATTTTGAG
8086669 C
1 C
8086670 CAATCTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (13 bp):
CTGCAATTTTGAG
Found at i:8088054 original size:7 final size:7
Alignment explanation
Indices: 8088044--8088091 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
8088034 AAATTTATTT
8088044 TTTAGGG
1 TTTAGGG
8088051 TTTAGGG
1 TTTAGGG
*
8088058 TTTAGTG
1 TTTAGGG
**
8088065 TTTAAAG
1 TTTAGGG
*
8088072 TTTAAGG
1 TTTAGGG
8088079 TTTAAGGG
1 TTT-AGGG
8088087 TTTAG
1 TTTAG
8088092 AGAAAGCCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
7 29 0.83
8 6 0.17
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:8088811 original size:41 final size:41
Alignment explanation
Indices: 8088754--8088831 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
8088744 ACTAAAAACG
8088754 CCGTTAAAGTCCTATTTTGCTATAGTGATTGTCTATCAACA
1 CCGTTAAAGTCCTATTTTGCTATAGTGATTGTCTATCAACA
8088795 CCGTTAAAGTCCTATTTTGCTATAGTGATTGTCTATC
1 CCGTTAAAGTCCTATTTTGCTATAGTGATTGTCTATC
8088832 TATCTATTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.24, C:0.19, G:0.15, T:0.41
Consensus pattern (41 bp):
CCGTTAAAGTCCTATTTTGCTATAGTGATTGTCTATCAACA
Found at i:8097015 original size:24 final size:23
Alignment explanation
Indices: 8096970--8097019 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
8096960 TATTTTTATT
8096970 TTTCTATTTTCATTTCTAAAAATA
1 TTTCTATTTTCATTTCTAAAAA-A
* *
8096994 TTTC-ATTTTCTATTTTTTAAAAA
1 TTTCTATTTTC-ATTTCTAAAAAA
8097017 TTT
1 TTT
8097020 AAAAAACATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.30, C:0.10, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTCTATTTTCATTTCTAAAAAA
Found at i:8097132 original size:2 final size:2
Alignment explanation
Indices: 8097125--8097152 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8097115 GAGAAACAAA
8097125 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8097153 GGATTCAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8106479 original size:12 final size:12
Alignment explanation
Indices: 8106462--8106486 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8106452 TTGGTCATGT
8106462 ATAATTTTAAGA
1 ATAATTTTAAGA
8106474 ATAATTTTAAGA
1 ATAATTTTAAGA
8106486 A
1 A
8106487 CCGAACAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (12 bp):
ATAATTTTAAGA
Found at i:8110313 original size:24 final size:24
Alignment explanation
Indices: 8110243--8110314 Score: 60
Period size: 24 Copynumber: 3.1 Consensus size: 24
8110233 AACAAGACTA
8110243 AAGATTGTAAATCTTGTTTCCCTG
1 AAGATTGTAAATCTTGTTTCCCTG
* *** ***
8110267 AAG-TTGT-AGTGGAG-TAGGCTG
1 AAGATTGTAAATCTTGTTTCCCTG
8110288 AAGATTGTAAATCTTGTTTCCCTG
1 AAGATTGTAAATCTTGTTTCCCTG
8110312 AAG
1 AAG
8110315 TTACAGTGGA
Statistics
Matches: 31, Mismatches: 14, Indels: 6
0.61 0.27 0.12
Matches are distributed among these distances:
21 7 0.23
22 7 0.23
23 7 0.23
24 10 0.32
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.36
Consensus pattern (24 bp):
AAGATTGTAAATCTTGTTTCCCTG
Found at i:8110336 original size:45 final size:45
Alignment explanation
Indices: 8110243--8110776 Score: 157
Period size: 45 Copynumber: 12.0 Consensus size: 45
8110233 AACAAGACTA
* ** * *
8110243 AAGATTGTAAATCTTGTTTCCCTGAAGTTGTAGTGGAGTAG-GCTG
1 AAGATTGTAAATCTAGTTTCCCTGAAGTTACAGTGGAGCAGATC-G
*
8110288 AAGATTGTAAATCTTGTTTCCCTGAAGTTACAGTGGAGCAGATCG
1 AAGATTGTAAATCTAGTTTCCCTGAAGTTACAGTGGAGCAGATCG
** * * * * **
8110333 AAGACGGTGAATCTAATCTT-CCTGAAGTTGCAGTGAAGCAGATTT
1 AAGATTGTAAATCTAGT-TTCCCTGAAGTTACAGTGGAGCAGATCG
** * * * ** * *
8110378 AAG---CCACCATCCTAG-CTCCCTAAAGTTGTAGTGGAGTAG-GCTG
1 AAGATTGTA-AAT-CTAGTTTCCCTGAAGTTACAGTGGAGCAGATC-G
* * * *
8110421 AAGATTGTAGATCTTGTTTCCCTGAAGTTACAGTGGATCAGATCA
1 AAGATTGTAAATCTAGTTTCCCTGAAGTTACAGTGGAGCAGATCG
* ** * * **
8110466 AAGATGGCGAATCTAGTCTT-CCTGAAGAATACAGTGAAGCAGATTT
1 AAGATTGTAAATCTAGT-TTCCCTGAAG-TTACAGTGGAGCAGATCG
***** * * * ** * *
8110512 AAG-CCACCAACCTAG-CTCCCTAAAGTTGTAGTGGAGTAG-GCTG
1 AAGATTGTAAATCTAGTTTCCCTGAAGTTACAGTGGAGCAGATC-G
* * * *
8110555 AAGATTGTAGATCTTGTTTCCCTGAAGTTACAGTGGATCAGATCA
1 AAGATTGTAAATCTAGTTTCCCTGAAGTTACAGTGGAGCAGATCG
* ** * * **
8110600 AAGATGGCGAATCTAGTCTT-CCTGAAGAATACAGTGAAGCAGATTT
1 AAGATTGTAAATCTAGT-TTCCCTGAAG-TTACAGTGGAGCAGATCG
***** * * * ** * *
8110646 AAG-CCACCAACCTAG-CTCCCTAAAGTTGTAGTGGAGTAG-GCTG
1 AAGATTGTAAATCTAGTTTCCCTGAAGTTACAGTGGAGCAGATC-G
* *
8110689 AAGATTGTAGATCTTGTTTCCCTGAAGTTACAGTGGAGCAGATCG
1 AAGATTGTAAATCTAGTTTCCCTGAAGTTACAGTGGAGCAGATCG
* * * *
8110734 AAGA-CG-ACGAATCTAGTTTTCCTGAAGTTGCAGTGAAGCAGAT
1 AAGATTGTA--AATCTAGTTTCCCTGAAGTTACAGTGGAGCAGAT
8110777 TTAATCCACC
Statistics
Matches: 338, Mismatches: 124, Indels: 54
0.66 0.24 0.10
Matches are distributed among these distances:
42 1 0.00
43 49 0.14
44 27 0.08
45 218 0.64
46 43 0.13
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (45 bp):
AAGATTGTAAATCTAGTTTCCCTGAAGTTACAGTGGAGCAGATCG
Done.