Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 270 of 770
Found at i:81428328 original size:49 final size:50
Alignment explanation
Indices: 81428272--81428404 Score: 189
Period size: 50 Copynumber: 2.7 Consensus size: 50
81428262 TTGATACGCA
* **
81428272 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCAG-TACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCAT-CAGATACACG
* * *
81428321 TAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCAGATACACG
81428371 TAGTAGCCTGCACTTAGTACTACACATGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT
81428405 CACAATAGAT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
49 32 0.43
50 42 0.57
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCAGATACACG
Found at i:81434909 original size:40 final size:39
Alignment explanation
Indices: 81434854--81435032 Score: 277
Period size: 40 Copynumber: 4.5 Consensus size: 39
81434844 AACCCAAGTA
* *
81434854 CCTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATG
1 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
81434894 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCG-GACTTAGCCCGGATATAGTAACTCGCACAAATG
81434934 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCG-GACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81434974 CCTTCGGAACTTAGCCCGGATATAGTAAGTCGCACAAATG
1 CCTTCGG-ACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81435014 CCTTCGGATCTTAGTCCGG
1 CCTTCGGA-CTTAGCCCGG
81435033 TTATCATCCG
Statistics
Matches: 132, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
39 3 0.02
40 129 0.98
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81447073 original size:40 final size:40
Alignment explanation
Indices: 81447021--81447248 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
81447011 GCCACTAGCT
* *
81447021 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
81447061 CAAATGCCTTCGGGACTTAGCCCAG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
81447100 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
81447140 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * ** * *
81447180 CGAATGCCTTCGGGACTTAGCCCGG-AATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
81447220 CAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 CAAATGCCT-TCGGGACTTAGCCCGGTTAT
81447249 CATCCGAACA
Statistics
Matches: 164, Mismatches: 20, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
39 38 0.23
40 125 0.76
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:81447119 original size:79 final size:80
Alignment explanation
Indices: 81447021--81447205 Score: 264
Period size: 79 Copynumber: 2.3 Consensus size: 80
81447011 GCCACTAGCT
* ** ** *
81447021 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCACAAATGCCTTCGGGACTTAGCCCAG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAACGCCTTCGGGACTTAGCCCAG
81447086 -TATAATAACTCGCA
66 ATATAATAACTCGCA
* *
81447100 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCACACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAACGCCTTCGGGACTTAGCCCAG
* *
81447165 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
81447180 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81447206 ATTAGCCACT
Statistics
Matches: 94, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 57 0.61
80 37 0.39
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAACGCCTTCGGGACTTAGCCCAG
ATATAATAACTCGCA
Found at i:81450012 original size:43 final size:43
Alignment explanation
Indices: 81449964--81450049 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
81449954 ACAGAGTTTC
* * *
81449964 ACATCCTCATTGAAGATTCAGTCAAATCACTCGAGGTGTTTAA
1 ACATCCTCATTAAAGATTCACTCAAATCACTCGAGCTGTTTAA
*
81450007 ACATCCTTATTAAAGATTCACTCAAATCACTCGAGCTGTTTAA
1 ACATCCTCATTAAAGATTCACTCAAATCACTCGAGCTGTTTAA
81450050 GGAAAATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (43 bp):
ACATCCTCATTAAAGATTCACTCAAATCACTCGAGCTGTTTAA
Found at i:81456446 original size:43 final size:43
Alignment explanation
Indices: 81456333--81456449 Score: 162
Period size: 43 Copynumber: 2.7 Consensus size: 43
81456323 TTGATGCCTC
* * * * *
81456333 TGTCCCAAACAGGGTCTTACACGAAATCATAATACGATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAA
*
81456376 TGTCCCAGACATGGTCTTACACATAATCACAATACAATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAA
* *
81456419 TGTTCCAGACATGGTCTTACATGTAATCACA
1 TGTCCCAGACATGGTCTTACACGTAATCACA
81456450 TCTCGATAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAA
Found at i:81458370 original size:46 final size:46
Alignment explanation
Indices: 81458317--81458492 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
81458307 TATTTGGGCA
81458317 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
81458363 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
81458410 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
81458456 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81458493 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:81458472 original size:93 final size:93
Alignment explanation
Indices: 81458313--81458484 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81458303 GGGATATTTG
* *
81458313 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
81458378 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
81458406 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
81458471 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
81458485 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:81461464 original size:15 final size:15
Alignment explanation
Indices: 81461444--81461512 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
81461434 GTATCTTGGG
81461444 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
81461459 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
81461474 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
81461489 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
81461504 TTTCTTTAT
1 TTTCTTTAT
81461513 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:81461513 original size:30 final size:30
Alignment explanation
Indices: 81461435--81461522 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
81461425 CATAGTATCG
* * * *
81461435 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
81461465 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
81461495 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
81461523 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:81463955 original size:46 final size:46
Alignment explanation
Indices: 81463902--81464077 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
81463892 TATTTGGGCA
81463902 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
81463948 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
81463995 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
81464041 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81464078 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:81464057 original size:93 final size:93
Alignment explanation
Indices: 81463898--81464069 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81463888 GGGATATTTG
* *
81463898 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
81463963 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
81463991 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
81464056 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
81464070 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:81467894 original size:29 final size:29
Alignment explanation
Indices: 81467804--81467963 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
81467794 ACTCGATTTC
* * **
81467804 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
81467833 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
81467861 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
81467891 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
81467920 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
81467949 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
81467964 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:81476060 original size:29 final size:29
Alignment explanation
Indices: 81475970--81476129 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
81475960 ACTCGATTTC
* * **
81475970 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
81475999 GCACACATAGTGCCATACGCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
81476027 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
81476057 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
81476086 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
81476115 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
81476130 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:81478009 original size:40 final size:39
Alignment explanation
Indices: 81477964--81478171 Score: 175
Period size: 40 Copynumber: 5.2 Consensus size: 39
81477954 CGGAATACAA
*
81477964 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
81478004 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * **
81478044 CCAGATTTAACAACTTGCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * ** *
81478084 CAGAATGTAGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
81478124 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
81478164 CCGGATAT
1 CCGGATAT
81478172 CATTCAATTG
Statistics
Matches: 135, Mismatches: 30, Indels: 6
0.79 0.18 0.04
Matches are distributed among these distances:
39 4 0.03
40 128 0.95
41 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:81478117 original size:80 final size:80
Alignment explanation
Indices: 81477967--81478164 Score: 195
Period size: 80 Copynumber: 2.5 Consensus size: 80
81477957 AATACAACCG
* * * * * *
81477967 GATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCT
1 GATATAACAACTTGCATGAATGCCTTCGGGTCTTAGCCAGAATAGAACGACTAGCACAAATGCCT
*
81478032 TCGGGTATTAGCCCA
66 TCGGGTATTAACCCA
* *
81478047 GATTTAACAACTTGCATGAATGCCTTCGGGTCTTAGCCAGAAT-GTA-GTCACTAGCAC-AATGG
1 GATATAACAACTTGCATGAATGCCTTCGGGTCTTAGCCAGAATAGAACG--ACTAGCACAAAT-G
* *
81478109 CCTTCGGGTCTTAACCCG
63 CCTTCGGGTATTAACCCA
** * * * *
81478127 GATATAATTACTAGCATAAATGTCTTCGGGACTTAGCC
1 GATATAACAACTTGCATGAATGCCTTCGGGTCTTAGCC
81478165 CGGATATCAT
Statistics
Matches: 97, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
78 1 0.01
79 5 0.05
80 91 0.94
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (80 bp):
GATATAACAACTTGCATGAATGCCTTCGGGTCTTAGCCAGAATAGAACGACTAGCACAAATGCCT
TCGGGTATTAACCCA
Found at i:81484352 original size:50 final size:49
Alignment explanation
Indices: 81484191--81484369 Score: 250
Period size: 49 Copynumber: 3.6 Consensus size: 49
81484181 CTGGTATGCA
* ** *
81484191 TAGTAGCCTGCACATAACACTACACATGTGACCAATTATCTGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
*
81484240 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
** ** *
81484289 TAGTAGCCTGCACTTAGTACTGTACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCTGGTACACG
*
81484339 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA
81484370 TCACAGTACT
Statistics
Matches: 115, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 74 0.64
50 41 0.36
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
Found at i:81484360 original size:99 final size:98
Alignment explanation
Indices: 81484191--81484369 Score: 268
Period size: 99 Copynumber: 1.8 Consensus size: 98
81484181 CTGGTATGCA
** *
81484191 TAGTAGCCTGCACATAACACTACACATGTGACCAATTATCTGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACATAACACTACACATGTGACCAACCATCTGATACACATAGTAGCCTGCACTTA
81484256 GTACTACACACGTGACCAATTATCTGGTACACG
66 GTACTACACACGTGACCAATTATCTGGTACACG
* ** ** *
81484289 TAGTAGCCTGCACTTAGTACTGTACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACATAACACTACACATGTGACC-AACCATCTGATACACATAGTAGCCTGCACTT
81484354 AGTACTACACACGTGA
65 AGTACTACACACGTGA
81484370 TCACAGTACT
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
98 28 0.39
99 43 0.61
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACATAACACTACACATGTGACCAACCATCTGATACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCAATTATCTGGTACACG
Found at i:81484379 original size:20 final size:20
Alignment explanation
Indices: 81484354--81484396 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
81484344 GCCTGCACTT
81484354 AGTACTACACACGTGATCAC
1 AGTACTACACACGTGATCAC
81484374 AGTACTACACACGTGATCAC
1 AGTACTACACACGTGATCAC
81484394 AGT
1 AGT
81484397 TTTCAGGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.21
Consensus pattern (20 bp):
AGTACTACACACGTGATCAC
Found at i:81488757 original size:48 final size:48
Alignment explanation
Indices: 81488722--81488925 Score: 320
Period size: 48 Copynumber: 4.2 Consensus size: 48
81488712 TATCCTATAT
* *
81488722 ATGGTCTTACACTGGCACACACATCAATGTCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTGGCACACATATCAACGTCGATGCCATGTCCCAGAC
* *
81488770 ATGGTCTTACACTGGCTCTCATATCAACGTCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTGGCACACATATCAACGTCGATGCCATGTCCCAGAC
* *
81488818 ATGGTTTTACACTGGCACACATATCAACGCCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTGGCACACATATCAACGTCGATGCCATGTCCCAGAC
*
81488866 ATGGTCTTACACTGGCACACATATCAATG-CTGATGCCATGTCCCAGAC
1 ATGGTCTTACACTGGCACACATATCAACGTC-GATGCCATGTCCCAGAC
*
81488914 ATGGTCTCACAC
1 ATGGTCTTACAC
81488926 GAGATCTCGT
Statistics
Matches: 144, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 1 0.01
48 143 0.99
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.25
Consensus pattern (48 bp):
ATGGTCTTACACTGGCACACATATCAACGTCGATGCCATGTCCCAGAC
Found at i:81494895 original size:37 final size:37
Alignment explanation
Indices: 81494845--81494922 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
81494835 TATAAAAGAA
81494845 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
81494882 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
81494919 GTCT
1 GTCT
81494923 CGCCCGGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:81495085 original size:49 final size:49
Alignment explanation
Indices: 81495025--81495147 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
81495015 CATATATTTT
*
81495025 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
81495074 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
81495123 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
81495148 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:81498293 original size:40 final size:41
Alignment explanation
Indices: 81498249--81498347 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
81498239 TCGATTGTTC
* * **
81498249 TCGGGACATAGCCCGG-TTATAGTGA-TTTGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAACGCCT
81498289 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAACGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAACGCCT
*
81498330 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
81498348 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.38
41 30 0.60
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAACGCCT
Found at i:81498868 original size:29 final size:29
Alignment explanation
Indices: 81498831--81499313 Score: 826
Period size: 29 Copynumber: 16.7 Consensus size: 29
81498821 TGTTGAAAAA
* *
81498831 CTCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
81498860 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
81498889 TTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
81498918 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
81498947 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
81498976 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
81499005 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
81499034 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
81499063 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
81499092 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
81499121 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
81499150 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
81499179 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
81499208 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
81499237 CTCGCACACATAGTGCCTCGATTACTGGT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* * *
81499266 CTCGCACACATAGTG-CTCGGTTAACGGAAT
1 CTCGCACACACAGTGCCTCGATT-ACTG-AT
*
81499296 -TTGCACACACAGTGCCTC
1 CTCGCACACACAGTGCCTC
81499314 TAATCATTCG
Statistics
Matches: 438, Mismatches: 13, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
28 6 0.01
29 428 0.98
30 4 0.01
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCGATTACTGAT
Found at i:81501375 original size:37 final size:37
Alignment explanation
Indices: 81501325--81501402 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
81501315 TATAAAAGAA
81501325 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
81501362 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
81501399 GTCT
1 GTCT
81501403 CGCCCGGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:81501565 original size:49 final size:49
Alignment explanation
Indices: 81501505--81501627 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
81501495 CATATATTTT
*
81501505 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
81501554 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
81501603 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
81501628 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:81517289 original size:22 final size:22
Alignment explanation
Indices: 81517263--81517309 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 22
81517253 CCATAAGGGT
81517263 AAAACATTCATTTTA-CACCATA
1 AAAACATTCATTTTACCA-CATA
81517285 AAAACATTCATTTTACCACATA
1 AAAACATTCATTTTACCACATA
81517307 AAA
1 AAA
81517310 GCAAAACAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 22 0.92
23 2 0.08
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAACATTCATTTTACCACATA
Found at i:81517407 original size:27 final size:27
Alignment explanation
Indices: 81517065--81517406 Score: 370
Period size: 27 Copynumber: 12.8 Consensus size: 27
81517055 ACATACATCA
* * * *
81517065 CATACGGGTAAAACAATCATTTTACCA
1 CATAAGGGCAAAACAGTCATTTTACCC
** *
81517092 CATAAGGGCAAAACAGTCCCTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCC
* *
81517119 CATAAGGGCAAAACAGTCATTTCACCT
1 CATAAGGGCAAAACAGTCATTTTACCC
* *
81517146 CATAAGGGAAAAACAATCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCC
* * *
81517173 TATAAGGGGAAAAAAGTCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCC
* *
81517200 CATAAGGACAAAACAGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCC
* * *
81517227 CATAAGGGTAAAAAAATCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCC
* * *
81517254 CATAAGGGTAAAACATTCATTTTACAC
1 CATAAGGGCAAAACAGTCATTTTACCC
* *
81517281 CAT-A----AAAACATTCATTTTACCA
1 CATAAGGGCAAAACAGTCATTTTACCC
**
81517303 CATAAAAGCAAAACAGTCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCC
* * *
81517330 CATAAGGGCATAACAATCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCC
*
81517357 CATAAGGGCAAAACAATCATTTTACCCC
1 CATAAGGGCAAAACAGTCATTTTA-CCC
81517385 CATAAGGGCAAAACAGTCATTT
1 CATAAGGGCAAAACAGTCATTT
81517407 ATCGATTAAG
Statistics
Matches: 267, Mismatches: 42, Indels: 11
0.83 0.13 0.03
Matches are distributed among these distances:
22 19 0.07
23 1 0.00
26 1 0.00
27 223 0.84
28 23 0.09
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.25
Consensus pattern (27 bp):
CATAAGGGCAAAACAGTCATTTTACCC
Found at i:81518914 original size:40 final size:40
Alignment explanation
Indices: 81518859--81519041 Score: 233
Period size: 40 Copynumber: 4.5 Consensus size: 40
81518849 ACCCAAGTAT
* *
81518859 CTTCGGGATTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
81518899 CTTCGAGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
** * * *
81518939 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
81518979 CTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
81519020 CTTCGGGACTTAGCCTGGATAT
1 CTTCGGGACTTAGCCCGGATAT
81519042 CATTCGAATA
Statistics
Matches: 120, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 2 0.02
40 89 0.74
41 26 0.22
42 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:81520783 original size:10 final size:10
Alignment explanation
Indices: 81520768--81520793 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
81520758 CATATTATGT
81520768 GCCCATGTGG
1 GCCCATGTGG
81520778 GCCCATGTGG
1 GCCCATGTGG
81520788 GCCCAT
1 GCCCAT
81520794 ATGTACGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.12, C:0.35, G:0.35, T:0.19
Consensus pattern (10 bp):
GCCCATGTGG
Found at i:81521021 original size:47 final size:47
Alignment explanation
Indices: 81520951--81521041 Score: 137
Period size: 47 Copynumber: 1.9 Consensus size: 47
81520941 GCCCAAAACG
* * **
81520951 GCCTCGGCCCATGAAATCTCTCATGGATGGCCTCAACGTTCTTAACA
1 GCCTCGACCCATGAAATCGCTCATGGATGAACTCAACGTTCTTAACA
*
81520998 GCCTCGACCCATGAAATCGCTCATGGATGAACTCAATGTTCTTA
1 GCCTCGACCCATGAAATCGCTCATGGATGAACTCAACGTTCTTA
81521042 CACCCGTGTT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
GCCTCGACCCATGAAATCGCTCATGGATGAACTCAACGTTCTTAACA
Found at i:81525105 original size:47 final size:45
Alignment explanation
Indices: 81524994--81525120 Score: 134
Period size: 47 Copynumber: 2.7 Consensus size: 45
81524984 GAGTTTTTGT
*
81524994 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCTACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-ACATTATGA
* * *
81525040 GAGCCAGTGCAAGAACATGTTTGGGACATGGCATC-G-ACATTGA-GA
1 GAGCTAGTGTAAG-ACATGTCTGGGACAT-GCATCGGCACATT-ATGA
81525085 CGAGTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 -GA--GCTAGTGTAAGACATGTCTGGGACATGCATC
81525121 AGCCTCAAGA
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
45 7 0.10
46 18 0.26
47 29 0.43
48 14 0.21
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCACATTATGA
Found at i:81526264 original size:85 final size:85
Alignment explanation
Indices: 81526121--81526314 Score: 291
Period size: 85 Copynumber: 2.3 Consensus size: 85
81526111 CGTGTGATGG
* * * *
81526121 ACACGGCCTAGCACATGGGCGTGTGCCTTGGCCGTGTGACATTTTAGGGGTGCTGATGTCAGAAA
1 ACACGGGCTAGGACACGGGCGTGTGCCTGGGCCGTGTGACATTTTAGGGGTGCTGATGTCAGAAA
* ** *
81526186 TAGAATGTCCATTTTTTTGT
66 CAGAATGTAAATGTTTTTGT
*
81526206 ACACGGGCTAGGACACGGGCGTGTGCCTGGGCTGTGTGACATTTT-GGGGCTGCTGATGTCAGAA
1 ACACGGGCTAGGACACGGGCGTGTGCCTGGGCCGTGTGACATTTTAGGGG-TGCTGATGTCAGAA
81526270 ACAGAATGTAAATGTTTTTGT
65 ACAGAATGTAAATGTTTTTGT
81526291 ACACGGGCTAGGACACGGGCGTGT
1 ACACGGGCTAGGACACGGGCGTGT
81526315 CATGGCCATG
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
84 4 0.04
85 95 0.96
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.28
Consensus pattern (85 bp):
ACACGGGCTAGGACACGGGCGTGTGCCTGGGCCGTGTGACATTTTAGGGGTGCTGATGTCAGAAA
CAGAATGTAAATGTTTTTGT
Found at i:81533259 original size:49 final size:49
Alignment explanation
Indices: 81533191--81533588 Score: 728
Period size: 49 Copynumber: 8.2 Consensus size: 49
81533181 AATATGAAAT
* *
81533191 ATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
81533240 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
81533289 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
*
81533338 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGGTGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
*
81533387 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCCATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
*
81533436 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
81533485 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
*
81533534 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
81533581 ATGTGAAA
1 ATGTGAAA
81533589 TATATGTGTG
Statistics
Matches: 341, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 43 0.13
49 298 0.87
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
Found at i:81533654 original size:48 final size:47
Alignment explanation
Indices: 81533580--81533779 Score: 258
Period size: 48 Copynumber: 4.2 Consensus size: 47
81533570 CGATGTGATG
* * * *
81533580 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAA-ATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
* *
81533628 AATGTGAAACATATATAAGATATGTATATGTGGTAAATCCGAATGGCT
1 AATGTGAAA-ATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
*
81533676 AATGTG-AAATATATGAGTGATATGTATATTTGGTAAAGCCGAATGGCT
1 AATGTGAAAATATAT-A-TGATATGTATATGTGGTAAAGCCGAATGGCT
* * *
81533724 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGTCGAATGGCT
1 AATGTGAAA-ATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
81533772 AATGTGAA
1 AATGTGAA
81533780 TGTTGTAACA
Statistics
Matches: 134, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
46 6 0.04
47 3 0.02
48 118 0.88
49 2 0.01
50 5 0.04
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.33
Consensus pattern (47 bp):
AATGTGAAAATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:81533680 original size:96 final size:96
Alignment explanation
Indices: 81533580--81533779 Score: 312
Period size: 96 Copynumber: 2.1 Consensus size: 96
81533570 CGATGTGATG
* *
81533580 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
1 AATGTGAAATATATGAGTGATATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
81533645 AGATATGTATATGTGGTAAA-TCCGAATGGCT
66 AGATATGTATATGTGGTAAAGT-CGAATGGCT
* * * * *
81533676 AATGTGAAATATATGAGTGATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AATGTGAAATATATGAGTGATATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
*
81533741 TGATATGTATATGTGGTAAAGTCGAATGGCT
66 AGATATGTATATGTGGTAAAGTCGAATGGCT
81533772 AATGTGAA
1 AATGTGAA
81533780 TGTTGTAACA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
96 94 0.99
97 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.33
Consensus pattern (96 bp):
AATGTGAAATATATGAGTGATATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
AGATATGTATATGTGGTAAAGTCGAATGGCT
Found at i:81533873 original size:37 final size:37
Alignment explanation
Indices: 81533819--81533909 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
81533809 AACTTGGAAA
*
81533819 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
81533857 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
81533894 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
81533910 TTCGTAAGAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:81538194 original size:49 final size:50
Alignment explanation
Indices: 81538122--81538359 Score: 270
Period size: 49 Copynumber: 4.8 Consensus size: 50
81538112 TGAGGTCACG
81538122 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCA
* * * * * *
81538171 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-AGGTCGCA
* * ** *
81538222 TGTGTAGTACTAAGTGCAGGCTGCTACGTGTATCAGATGGTTAGGT-GACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCG-CA
* *
81538272 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCA
* *
81538321 TGTGTAGTAGTAAGTGCAGGCTACTATG-GATACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTG-TACCAGATA
81538360 GCTTTGGCTA
Statistics
Matches: 157, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
48 1 0.01
49 75 0.48
50 45 0.29
51 36 0.23
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCA
Found at i:81538251 original size:28 final size:28
Alignment explanation
Indices: 81538219--81538302 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
81538209 AACTTCAATC
81538219 ACGTGTGTAGTACTAAGTGCAGGCTGCT
1 ACGTGTGTAGTACTAAGTGCAGGCTGCT
* * *
81538247 ACGTGTATCAG-A-T-GGT-TAGG-TG--
1 ACGTGTGT-AGTACTAAGTGCAGGCTGCT
*
81538269 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTGCT
81538297 ACGTGT
1 ACGTGT
81538303 ACCGGATAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 1 0.02
24 4 0.10
25 6 0.15
26 3 0.07
27 1 0.02
28 14 0.34
29 2 0.05
ACGTcount: A:0.23, C:0.15, G:0.32, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTGCT
Found at i:81540582 original size:46 final size:46
Alignment explanation
Indices: 81540435--81540587 Score: 139
Period size: 46 Copynumber: 3.3 Consensus size: 46
81540425 ATTGTGAGCT
* * * * * *
81540435 AGTGTAAGACATGTTTGGGACAAGCATCAGGCAC-ATTATGTGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GATGTAAGCC
* * * * * *
81540481 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGTA-AGCC
*
81540529 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAACC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCC
81540575 AGTGTAAGACATG
1 AGTGTAAGACATG
81540588 CATCGGCTAC
Statistics
Matches: 83, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
46 36 0.43
47 27 0.33
48 19 0.23
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCC
Found at i:81542495 original size:43 final size:43
Alignment explanation
Indices: 81542448--81542564 Score: 193
Period size: 43 Copynumber: 2.7 Consensus size: 43
81542438 TATATAACGG
81542448 TGCCAATGTCCCTGACATGGTCTTACATGTAAACACAATACAA
1 TGCCAATGTCCCTGACATGGTCTTACATGTAAACACAATACAA
* *
81542491 TGCCAATGTCCCAGACATGGTCTTACGTGTAAACACAATACAA
1 TGCCAATGTCCCTGACATGGTCTTACATGTAAACACAATACAA
81542534 TGCCAATGTCCCT-AGCATGGTCTTACA-GTAA
1 TGCCAATGTCCCTGA-CATGGTCTTACATGTAA
81542565 TCTCATCTTG
Statistics
Matches: 69, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
42 5 0.07
43 64 0.93
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
TGCCAATGTCCCTGACATGGTCTTACATGTAAACACAATACAA
Found at i:81546697 original size:93 final size:93
Alignment explanation
Indices: 81546564--81546735 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
81546554 GCCCATAAGT
* * *
81546564 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
81546629 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
81546657 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
81546722 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
81546736 AAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:81546731 original size:46 final size:46
Alignment explanation
Indices: 81546556--81546731 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
81546546 TGTAACCCGC
* * * *
81546556 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGTAT
* * *
81546602 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGTA--T
* *** *
81546648 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGTAT
*
81546695 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
81546732 TGCCAAAATA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
44 3 0.03
46 68 0.64
47 31 0.29
49 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGTAT
Found at i:81546750 original size:46 final size:47
Alignment explanation
Indices: 81546607--81546750 Score: 129
Period size: 46 Copynumber: 3.1 Consensus size: 47
81546597 CGCATCCATA
* * * *
81546607 AGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTAATATC-CT
* * **
81546656 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGTATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTAATATCC-T
*
81546699 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTAATATCCT
81546746 AGTGA
1 AGTGA
81546751 CATGTCACTT
Statistics
Matches: 77, Mismatches: 11, Indels: 17
0.73 0.10 0.16
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
44 1 0.01
46 34 0.44
47 28 0.36
48 5 0.06
49 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (47 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTAATATCCT
Found at i:81550143 original size:27 final size:26
Alignment explanation
Indices: 81550071--81550181 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 26
81550061 ATGGAGGAAG
81550071 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTATGCCAC-AATATC
*
81550098 TGTTTCTAGTGGCTATGCCACGAATATC
1 TG-TTCTGGTGGCTATGCCAC-AATATC
*
81550126 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTATGCCACAATATC
* * * *
81550152 TATATCTGGTGACTCTGTCACAATATC
1 TGT-TCTGGTGGCTATGCCACAATATC
81550179 TGT
1 TGT
81550182 ACTAGCAGCC
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.11
27 41 0.55
28 25 0.34
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
TGTTCTGGTGGCTATGCCACAATATC
Found at i:81558236 original size:29 final size:27
Alignment explanation
Indices: 81558202--81558304 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
81558192 TACTCAATCA
*
81558202 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
81558231 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
81558260 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
81558289 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
81558305 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:81565964 original size:29 final size:27
Alignment explanation
Indices: 81565930--81566032 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
81565920 TACTCAATCA
*
81565930 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
81565959 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
81565988 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
81566017 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
81566033 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:81568193 original size:19 final size:19
Alignment explanation
Indices: 81568157--81568195 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
81568147 TTTTCATCAT
* *
81568157 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
81568176 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
81568195 A
1 A
81568196 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:81568744 original size:28 final size:27
Alignment explanation
Indices: 81568658--81568747 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
81568648 ATATGACAGT
*
81568658 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* ** *
81568687 CACCAGAACTGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
81568714 CACCAGAACAAATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
81568742 CACCAG
1 CACCAG
81568748 GACGCTTCCT
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
27 21 0.43
28 21 0.43
29 7 0.14
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:81571489 original size:28 final size:28
Alignment explanation
Indices: 81571457--81571555 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
81571447 GCAATAAGCC
*
81571457 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
81571485 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
81571513 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
81571542 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81571556 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:81575135 original size:29 final size:29
Alignment explanation
Indices: 81575101--81575160 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
81575091 TTAATATAAG
81575101 ACTGATAACTGTTATTTTAATTGAATTCA
1 ACTGATAACTGTTATTTTAATTGAATTCA
81575130 ACTGATAACTGTTATTTTAATTGAATTCA
1 ACTGATAACTGTTATTTTAATTGAATTCA
81575159 AC
1 AC
81575161 CAACTATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (29 bp):
ACTGATAACTGTTATTTTAATTGAATTCA
Found at i:81578610 original size:22 final size:22
Alignment explanation
Indices: 81578583--81578625 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
81578573 AAAGAATAAA
*
81578583 ATAATGAAAAAAAAGGGAAAAT
1 ATAATGAAAAAAAAGGAAAAAT
*
81578605 ATAATGAAAACAAAGGAAAAA
1 ATAATGAAAAAAAAGGAAAAA
81578626 AAAAGTGTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.70, C:0.02, G:0.16, T:0.12
Consensus pattern (22 bp):
ATAATGAAAAAAAAGGAAAAAT
Found at i:81578864 original size:7 final size:7
Alignment explanation
Indices: 81578852--81578876 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
81578842 GTTGTCTTCT
81578852 TGTTTGA
1 TGTTTGA
81578859 TGTTTGA
1 TGTTTGA
81578866 TGTTTGA
1 TGTTTGA
81578873 TGTT
1 TGTT
81578877 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:81579804 original size:27 final size:28
Alignment explanation
Indices: 81579748--81579815 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 28
81579738 AAATTTGTAC
81579748 AGCACTAAGTGTGCGAGTTTGATAATAT
1 AGCACTAAGTGTGCGAGTTTGATAATAT
* **
81579776 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATAATAT
81579803 AGCACTAAGTGTG
1 AGCACTAAGTGTG
81579816 TGGACTCACT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATAATAT
Found at i:81582115 original size:27 final size:27
Alignment explanation
Indices: 81582085--81582261 Score: 186
Period size: 27 Copynumber: 6.6 Consensus size: 27
81582075 TTTTGCACTT
81582085 ATAGGGTAAAATGATCGAAATACCCTC
1 ATAGGGTAAAATGATCGAAATACCCTC
81582112 ATAGGGTAAAATGATCGAAATACCC-C
1 ATAGGGTAAAATGATCGAAATACCCTC
* *
81582138 TATAGGGTAAAATGATCGAAAAACCCTA
1 -ATAGGGTAAAATGATCGAAATACCCTC
* *
81582166 ATAAGGTAAAATG-TCCAAAATACCCTC
1 ATAGGGTAAAATGAT-CGAAATACCCTC
81582193 ATAGGGTAAAATG-TCTGAAATACCCCTC
1 ATAGGGTAAAATGATC-GAAATA-CCCTC
** *
81582221 -TAAAGTAAAATGA-CTGTAATA-CCTC
1 ATAGGGTAAAATGATC-GAAATACCCTC
*
81582246 TATAAGGTAAAATGAT
1 -ATAGGGTAAAATGAT
81582262 AGATTTGTTC
Statistics
Matches: 129, Mismatches: 12, Indels: 17
0.82 0.08 0.11
Matches are distributed among these distances:
25 4 0.03
26 3 0.02
27 117 0.91
28 5 0.04
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.24
Consensus pattern (27 bp):
ATAGGGTAAAATGATCGAAATACCCTC
Found at i:81582201 original size:81 final size:81
Alignment explanation
Indices: 81582084--81582261 Score: 229
Period size: 81 Copynumber: 2.2 Consensus size: 81
81582074 ATTTTGCACT
* * **
81582084 TATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGATC-GAAATACCCCTATAGGGTAA
1 TATAAGGTAAAATGATCAAAATACCCTCATAGGGTAAAATG-TCTGAAATACCCCTATAAAGTAA
81582148 AATGA-TCGAAAAACC-C
65 AATGACT-GAAAAACCTC
*
81582164 TAATAAGGTAAAATG-TCCAAAATACCCTCATAGGGTAAAATGTCTGAAATACCCCTCTAAAGTA
1 T-ATAAGGTAAAATGAT-CAAAATACCCTCATAGGGTAAAATGTCTGAAATACCCCTATAAAGTA
* *
81582228 AAATGACTGTAATACCTC
64 AAATGACTGAAAAACCTC
81582246 TATAAGGTAAAATGAT
1 TATAAGGTAAAATGAT
81582262 AGATTTGTTC
Statistics
Matches: 85, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
80 4 0.05
81 77 0.91
82 4 0.05
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.24
Consensus pattern (81 bp):
TATAAGGTAAAATGATCAAAATACCCTCATAGGGTAAAATGTCTGAAATACCCCTATAAAGTAAA
ATGACTGAAAAACCTC
Found at i:81582613 original size:18 final size:18
Alignment explanation
Indices: 81582590--81582666 Score: 93
Period size: 18 Copynumber: 4.3 Consensus size: 18
81582580 TCTACTTGCA
81582590 TACTGCACTGATTACTGT
1 TACTGCACTGATTACTGT
* *
81582608 TACTGCATTGATCA-TGGT
1 TACTGCACTGATTACT-GT
*
81582626 TGCTGCACTGATTACTGT
1 TACTGCACTGATTACTGT
* *
81582644 TATTGCACTGATTAATGT
1 TACTGCACTGATTACTGT
81582662 TACTG
1 TACTG
81582667 AAATGGGCTA
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
17 1 0.02
18 46 0.96
19 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.40
Consensus pattern (18 bp):
TACTGCACTGATTACTGT
Found at i:81582697 original size:34 final size:34
Alignment explanation
Indices: 81582659--81582743 Score: 125
Period size: 34 Copynumber: 2.5 Consensus size: 34
81582649 CACTGATTAA
81582659 TGTTACTGAAATGGGCTAAAGCCCAGACCGCTAC
1 TGTTACTGAAATGGGCTAAAGCCCAGACCGCTAC
* * * *
81582693 TGTTACTGAAATTGGCTAAGGCTCAGACTGCTAC
1 TGTTACTGAAATGGGCTAAAGCCCAGACCGCTAC
*
81582727 TGTTACTGATATGGGCT
1 TGTTACTGAAATGGGCT
81582744 TAGGCCCATA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 45 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (34 bp):
TGTTACTGAAATGGGCTAAAGCCCAGACCGCTAC
Found at i:81585889 original size:27 final size:27
Alignment explanation
Indices: 81585871--81586058 Score: 173
Period size: 27 Copynumber: 7.3 Consensus size: 27
81585861 CTTATAGGGC
81585871 AAAATGACCAAAATACCCTCATAAGGT
1 AAAATGACCAAAATACCCTCATAAGGT
* *
81585898 ---A-G----AAATACCCTTATTAGGT
1 AAAATGACCAAAATACCCTCATAAGGT
* *
81585917 AAAATGATCGAAATACCCTCATAAGGT
1 AAAATGACCAAAATACCCTCATAAGGT
* *
81585944 AAAATGACCGAAATACCCTCATAGGGT
1 AAAATGACCAAAATACCCTCATAAGGT
*
81585971 AAAATGACCAAAATAACCC-CATAGGGT
1 AAAATGACCAAAAT-ACCCTCATAAGGT
* *
81585998 AGAATGACCGAAATACCC-CTATAAGGT
1 AAAATGACCAAAATACCCTC-ATAAGGT
* *
81586025 AAAATGACTATAATACCC-CTATAAGGT
1 AAAATGACCAAAATACCCTC-ATAAGGT
81586052 AAAATGA
1 AAAATGA
81586059 GAGATTTGTT
Statistics
Matches: 137, Mismatches: 14, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
19 15 0.11
22 1 0.01
23 2 0.01
24 1 0.01
26 5 0.04
27 109 0.80
28 4 0.03
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.21
Consensus pattern (27 bp):
AAAATGACCAAAATACCCTCATAAGGT
Found at i:81585905 original size:19 final size:18
Alignment explanation
Indices: 81585880--81585921 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
81585870 CAAAATGACC
81585880 AAAATACCCTCATAAGGT
1 AAAATACCCTCATAAGGT
* *
81585898 AGAAATACCCTTATTAGGT
1 A-AAATACCCTCATAAGGT
81585917 AAAAT
1 AAAAT
81585922 GATCGAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (18 bp):
AAAATACCCTCATAAGGT
Found at i:81586446 original size:18 final size:18
Alignment explanation
Indices: 81586391--81586448 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
81586381 TCTACTTGGA
* *
81586391 TACTGTACTGATTACTGT
1 TACTGCACTGATTAATGT
* * *
81586409 TAATGCATTGA-TCATGGT
1 TACTGCACTGATTAAT-GT
81586427 TACTGCACTGATTAATGT
1 TACTGCACTGATTAATGT
81586445 TACT
1 TACT
81586449 AAAATGGGCT
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
17 2 0.07
18 25 0.83
19 3 0.10
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.41
Consensus pattern (18 bp):
TACTGCACTGATTAATGT
Found at i:81586480 original size:34 final size:34
Alignment explanation
Indices: 81586442--81586536 Score: 127
Period size: 34 Copynumber: 2.8 Consensus size: 34
81586432 CACTGATTAA
* *
81586442 TGTTACTAAAATGGGCTAAAGTCCAGACTGCTAC
1 TGTTACTGAAATGGGCTAAAGCCCAGACTGCTAC
* *
81586476 TGTTACTGAAATGGGCTAAGGCCCAGATTGCTAC
1 TGTTACTGAAATGGGCTAAAGCCCAGACTGCTAC
* * *
81586510 TGTTACTGATATGGGCTTAGGCCCAGA
1 TGTTACTGAAATGGGCTAAAGCCCAGA
81586537 ATGTATTCGC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 55 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (34 bp):
TGTTACTGAAATGGGCTAAAGCCCAGACTGCTAC
Found at i:81592277 original size:29 final size:29
Alignment explanation
Indices: 81592186--81592317 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
81592176 TACTCGATTT
** * *
81592186 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
81592215 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
81592244 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
81592273 TGCACACTTAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81592302 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
81592318 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 2 0.02
29 83 0.98
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:81600002 original size:29 final size:28
Alignment explanation
Indices: 81599969--81600041 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
81599959 CCTTCGAGCT
81599969 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATAT-TTTCCAGCA
*
81599998 TGCACACTTAGTGCCATATTTTCCAGCA
1 CGCACACTTAGTGCCATATTTTCCAGCA
81600026 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
81600042 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATTTTCCAGCA
Found at i:81600030 original size:28 final size:29
Alignment explanation
Indices: 81599911--81600041 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
81599901 TACTCGATTT
** * *
81599911 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
81599940 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
81599969 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
81599998 TGCACACTTAGTGCCATAT-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81600026 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
81600042 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
28 26 0.31
29 59 0.69
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:81605495 original size:40 final size:39
Alignment explanation
Indices: 81605384--81605534 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
81605374 TGATAAACGT
* * *
81605384 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
81605424 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
81605464 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
81605504 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
81605535 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:81605518 original size:80 final size:79
Alignment explanation
Indices: 81605384--81605534 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
81605374 TGATAAACGT
*
81605384 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
81605449 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
81605464 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
81605527 CCGGATAT
64 CCGGATAT
81605535 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:81613372 original size:40 final size:40
Alignment explanation
Indices: 81613327--81613493 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
81613317 CGGAATATAA
81613327 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81613367 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
81613407 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81613447 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81613486 CCGGATAT
1 CCGGATAT
81613494 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81632699 original size:44 final size:46
Alignment explanation
Indices: 81632649--81632741 Score: 120
Period size: 44 Copynumber: 2.1 Consensus size: 46
81632639 TACAACTTAT
* *
81632649 ATTCCATTCAACCAAACACA-AGAA-TACT-ATTCCAGTTCTATTCC
1 ATTCCATTCAACCAAACA-ATAGAATTACTAATTACAGCTCTATTCC
* *
81632693 ATTCCATTCAACTAAACAATTGAATTACTAATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACAATAGAATTACTAATTACAGCTCTATTCC
81632739 ATT
1 ATT
81632742 ACATCTCTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 20 0.48
45 4 0.10
46 17 0.40
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAATAGAATTACTAATTACAGCTCTATTCC
Found at i:81634857 original size:13 final size:13
Alignment explanation
Indices: 81634821--81634864 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
81634811 CTCTAAATAG
*
81634821 TTAATAGAATCAA
1 TTAATAGAATTAA
*
81634834 TTGATCA-AATTAA
1 TTAAT-AGAATTAA
81634847 TTAATAGAATTAA
1 TTAATAGAATTAA
81634860 TTAAT
1 TTAAT
81634865 CAAACCATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 1 0.04
13 24 0.92
14 1 0.04
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.39
Consensus pattern (13 bp):
TTAATAGAATTAA
Found at i:81642157 original size:29 final size:29
Alignment explanation
Indices: 81642122--81642195 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
81642112 GTTGTGAGAT
* *
81642122 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
81642151 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
81642180 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81642196 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:81652007 original size:39 final size:39
Alignment explanation
Indices: 81651962--81652082 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
81651952 ATGCAAGACA
81651962 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
81652001 CTGGAAATGTATCCGAGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
81652040 CTGGAAATGTGTCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
81652079 CTGG
1 CTGG
81652083 TGCTGGTAAT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:81662870 original size:107 final size:108
Alignment explanation
Indices: 81662683--81662895 Score: 383
Period size: 107 Copynumber: 2.0 Consensus size: 108
81662673 AAAACACGTC
*
81662683 AAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTTAA
1 AAAAATTTTATCAGAGTAATTAACAAAAAATTTAATACAATTTTGTTAGAAATTTTATTATTTAA
*
81662748 AACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAAGT
66 AACTTATTCCAACTTAACATATCATTATTTTGTTAAACTAAGT
*
81662791 AAAAATTTTAT-AGAGTAATTAACAAAAAATTTAATACAATTTTGTTTGAAATTTTATTATTTAA
1 AAAAATTTTATCAGAGTAATTAACAAAAAATTTAATACAATTTTGTTAGAAATTTTATTATTTAA
*
81662855 AACTTATTCTAACTTAACATATCATTATTTTGTTAAACTAA
66 AACTTATTCCAACTTAACATATCATTATTTTGTTAAACTAA
81662896 TTTTTTGTTT
Statistics
Matches: 101, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
107 90 0.89
108 11 0.11
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (108 bp):
AAAAATTTTATCAGAGTAATTAACAAAAAATTTAATACAATTTTGTTAGAAATTTTATTATTTAA
AACTTATTCCAACTTAACATATCATTATTTTGTTAAACTAAGT
Found at i:81663762 original size:19 final size:19
Alignment explanation
Indices: 81663726--81663763 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
81663716 AGATAAGTGT
**
81663726 TTTTAATTTAAAGTTAAAA
1 TTTTAATTTAAAAATAAAA
81663745 TTTTAATTTAAAAATAAAA
1 TTTTAATTTAAAAATAAAA
81663764 AAAATATAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
TTTTAATTTAAAAATAAAA
Found at i:81665056 original size:27 final size:27
Alignment explanation
Indices: 81665026--81665170 Score: 121
Period size: 27 Copynumber: 5.3 Consensus size: 27
81665016 CCATGTAGGT
* * *
81665026 TTCCATTTCGTAGATTGCCACAAAGGG
1 TTCCATTTCATAAATTGCCACAAAGGC
* * * *
81665053 TTCCCTTTTCACAAATCGCCATAAAGGC
1 TT-CCATTTCATAAATTGCCACAAAGGC
* * * *
81665081 TTCCCTTTTTATATATTGCCACAAAGGA
1 TT-CCATTTCATAAATTGCCACAAAGGC
* *
81665109 TTCC-TTTCCATAGATAGCCACAAAGGC
1 TTCCATTT-CATAAATTGCCACAAAGGC
* *
81665136 TTCCATTTCATAAATTGCCACAAAAGT
1 TTCCATTTCATAAATTGCCACAAAGGC
81665163 TTCCATTT
1 TTCCATTT
81665171 ATCTGGCATG
Statistics
Matches: 94, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
26 3 0.03
27 46 0.49
28 45 0.48
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (27 bp):
TTCCATTTCATAAATTGCCACAAAGGC
Found at i:81665073 original size:28 final size:27
Alignment explanation
Indices: 81665039--81665159 Score: 125
Period size: 27 Copynumber: 4.4 Consensus size: 27
81665029 CATTTCGTAG
* *
81665039 ATTGCCACAAAGGGTTCCCTTTTCACAA
1 ATTGCCACAAAGGCTT-CCTTTTCATAA
* * * *
81665067 ATCGCCATAAAGGCTTCCCTTTTTATAT
1 ATTGCCACAAAGGCTT-CCTTTTCATAA
* * *
81665095 ATTGCCACAAAGGATTCCTTTCCATAG
1 ATTGCCACAAAGGCTTCCTTTTCATAA
* *
81665122 ATAGCCACAAAGGCTTCCATTTCATAA
1 ATTGCCACAAAGGCTTCCTTTTCATAA
81665149 ATTGCCACAAA
1 ATTGCCACAAA
81665160 AGTTTCCATT
Statistics
Matches: 75, Mismatches: 18, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
27 40 0.53
28 35 0.47
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.30
Consensus pattern (27 bp):
ATTGCCACAAAGGCTTCCTTTTCATAA
Found at i:81665137 original size:55 final size:55
Alignment explanation
Indices: 81665026--81665159 Score: 153
Period size: 55 Copynumber: 2.4 Consensus size: 55
81665016 CCATGTAGGT
* * * * * *
81665026 TTCCATTTCGTAGATTGCCACAAAGGGTTCCCTTTTCACAAATCGCCATAAAGGC
1 TTCCATTTCATAAATTGCCACAAAGGATTCCCTTTCCACAAATAGCCACAAAGGC
* * * * *
81665081 TTCCCTTTTTATATATTGCCACAAAGGATT-CCTTTCCATAGATAGCCACAAAGGC
1 TT-CCATTTCATAAATTGCCACAAAGGATTCCCTTTCCACAAATAGCCACAAAGGC
81665136 TTCCATTTCATAAATTGCCACAAA
1 TTCCATTTCATAAATTGCCACAAA
81665160 AGTTTCCATT
Statistics
Matches: 65, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
54 19 0.29
55 24 0.37
56 22 0.34
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (55 bp):
TTCCATTTCATAAATTGCCACAAAGGATTCCCTTTCCACAAATAGCCACAAAGGC
Found at i:81672873 original size:37 final size:37
Alignment explanation
Indices: 81672811--81672955 Score: 218
Period size: 37 Copynumber: 3.9 Consensus size: 37
81672801 GCTCAGACGA
* *
81672811 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* * *
81672848 ACTCTCCACACGTAGTCATCAGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
81672885 AATCTCCACACGTAATCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
81672922 AATCTCCACACGTAGTCGTCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
81672956 ATATATTTCC
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:81673071 original size:48 final size:48
Alignment explanation
Indices: 81673013--81673863 Score: 1342
Period size: 48 Copynumber: 17.7 Consensus size: 48
81673003 ACATTAGTCG
* * * *
81673013 TTCGGCTTTACCACATATTCATATCTCATACATATTTCACGTTCGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* * * *
81673061 TTCGGCTTTACGACATATACATATCTCATATATATTTCACGTTAGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* * *
81673109 TTCAGCTTTACCACATATACATATCACACATATATTTCACATTGGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673157 TTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673205 TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673253 TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673301 TTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673349 TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673397 TTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
*
81673445 TTCGGCTTTACCACATATACATATCACACATATATTTCACATTCGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673493 TTCGGCTTTACCACATATACATATCTCAGACATATTTCACATTCGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673541 TTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673589 TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673637 TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673685 TTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673733 TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673781 TTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCA
1 TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
* *
81673829 TTCGGCTTTACCACATATAAATATCACACATATAT
1 TTCGGCTTTACCACATATACATATCTCACATATAT
81673864 ATATTTATCT
Statistics
Matches: 750, Mismatches: 53, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 750 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCGGCTTTACCACATATACATATCTCACATATATTTCACATTCGCCA
Found at i:81676627 original size:17 final size:17
Alignment explanation
Indices: 81676597--81676630 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
81676587 GACATTATGT
81676597 TTTGAATTCCATAGCTA
1 TTTGAATTCCATAGCTA
81676614 TTTG-ATTCCTATAGCTA
1 TTTGAATTCC-ATAGCTA
81676631 CTAGAACCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.44
Consensus pattern (17 bp):
TTTGAATTCCATAGCTA
Found at i:81690959 original size:57 final size:58
Alignment explanation
Indices: 81690889--81691029 Score: 158
Period size: 57 Copynumber: 2.4 Consensus size: 58
81690879 TTTACAACAT
* * * * * * * *
81690889 GATTACCAGTCCAGGATAAATTCTATCCGTAGCATACGCTCTAGAGGGCTTA-ATTTG
1 GATTACCCGTCCAGGCTAAATTCAATCCATAACATAAGCTCAAGAGGGCTTACATTAG
* * *
81690946 GATTACCCGTCCAGGCTAAATCCAATCTATAACATAAGCTCAAGAGTGCTTACATTAG
1 GATTACCCGTCCAGGCTAAATTCAATCCATAACATAAGCTCAAGAGGGCTTACATTAG
* *
81691004 AATTACCCATCCAGGCTAAATTCAAT
1 GATTACCCGTCCAGGCTAAATTCAAT
81691030 TTGCAACACA
Statistics
Matches: 69, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
57 42 0.61
58 27 0.39
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (58 bp):
GATTACCCGTCCAGGCTAAATTCAATCCATAACATAAGCTCAAGAGGGCTTACATTAG
Found at i:81691017 original size:58 final size:57
Alignment explanation
Indices: 81690921--81691029 Score: 146
Period size: 58 Copynumber: 1.9 Consensus size: 57
81690911 CTATCCGTAG
* * * * *
81690921 CATACGCTCTAGAGGGCTTAATTTGGATTACCCGTCCAGGCTAAATCCAATCTATAA
1 CATAAGCTCAAGAGGGCTTAATTAGAATTACCCATCCAGGCTAAATCCAATCTATAA
* *
81690978 CATAAGCTCAAGAGTGCTTACATTAGAATTACCCATCCAGGCTAAATTCAAT
1 CATAAGCTCAAGAGGGCTTA-ATTAGAATTACCCATCCAGGCTAAATCCAAT
81691030 TTGCAACACA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 17 0.39
58 27 0.61
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.28
Consensus pattern (57 bp):
CATAAGCTCAAGAGGGCTTAATTAGAATTACCCATCCAGGCTAAATCCAATCTATAA
Found at i:81695410 original size:29 final size:29
Alignment explanation
Indices: 81695376--81695593 Score: 275
Period size: 29 Copynumber: 7.6 Consensus size: 29
81695366 AAAGTCTCAA
*
81695376 CACAAAGGCGTCCTTTTAACAGAGATCA-C
1 CACAAAGGCTTCCTTTTAACAGAGAT-AGC
*
81695405 CACAAAGGCTTCCTTTTAATAGAGATAGC
1 CACAAAGGCTTCCTTTTAACAGAGATAGC
* *
81695434 CACAAATGCTTCCTTTTAACAGAGGTAGC
1 CACAAAGGCTTCCTTTTAACAGAGATAGC
81695463 CACAAAGGCTTCCTTTTAACA-AGGATAGC
1 CACAAAGGCTTCCTTTTAACAGA-GATAGC
* *
81695492 CACAAAGGCTTCATTTTAACAGAGATAAC
1 CACAAAGGCTTCCTTTTAACAGAGATAGC
* *
81695521 CACTAAGGCTTCCTTTTAATAGAGATAGC
1 CACAAAGGCTTCCTTTTAACAGAGATAGC
* *
81695550 CACAAAGGCAT-CTTTT--CAGAAATAGC
1 CACAAAGGCTTCCTTTTAACAGAGATAGC
**
81695576 CACAAAGGAATCCTTTTA
1 CACAAAGGCTTCCTTTTA
81695594 GAAATAACTA
Statistics
Matches: 166, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
26 18 0.11
27 5 0.03
28 7 0.04
29 135 0.81
30 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (29 bp):
CACAAAGGCTTCCTTTTAACAGAGATAGC
Found at i:81695609 original size:26 final size:26
Alignment explanation
Indices: 81695549--81695601 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
81695539 ATAGAGATAG
* *
81695549 CCACAAAGGCATCTTTTCAGAAATAG
1 CCACAAAGGAATCTTTTCAGAAATAA
81695575 CCACAAAGGAATCCTTTT-AGAAATAA
1 CCACAAAGGAAT-CTTTTCAGAAATAA
81695601 C
1 C
81695602 TAGAAAGGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.42, C:0.23, G:0.13, T:0.23
Consensus pattern (26 bp):
CCACAAAGGAATCTTTTCAGAAATAA
Found at i:81695807 original size:88 final size:88
Alignment explanation
Indices: 81695658--81695835 Score: 356
Period size: 88 Copynumber: 2.0 Consensus size: 88
81695648 TCCACCTAAA
81695658 CTCACCGTTGTGATGTTTGCCCCTCATTGTCTGGTACTTACCCAACCATACTTTAAATCTTTTCC
1 CTCACCGTTGTGATGTTTGCCCCTCATTGTCTGGTACTTACCCAACCATACTTTAAATCTTTTCC
81695723 AGATGTAATAGCCCAACCATGGT
66 AGATGTAATAGCCCAACCATGGT
81695746 CTCACCGTTGTGATGTTTGCCCCTCATTGTCTGGTACTTACCCAACCATACTTTAAATCTTTTCC
1 CTCACCGTTGTGATGTTTGCCCCTCATTGTCTGGTACTTACCCAACCATACTTTAAATCTTTTCC
81695811 AGATGTAATAGCCCAACCATGGT
66 AGATGTAATAGCCCAACCATGGT
81695834 CT
1 CT
81695836 TACACTATAT
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 90 1.00
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.34
Consensus pattern (88 bp):
CTCACCGTTGTGATGTTTGCCCCTCATTGTCTGGTACTTACCCAACCATACTTTAAATCTTTTCC
AGATGTAATAGCCCAACCATGGT
Found at i:81702903 original size:21 final size:21
Alignment explanation
Indices: 81702877--81702918 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
81702867 CAAAAACAGG
81702877 GGACACACACCTGTGTGACTC
1 GGACACACACCTGTGTGACTC
*
81702898 GGACACACGCCTGTGTGACTC
1 GGACACACACCTGTGTGACTC
81702919 TGCCGTGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.33, G:0.26, T:0.19
Consensus pattern (21 bp):
GGACACACACCTGTGTGACTC
Found at i:81704942 original size:20 final size:21
Alignment explanation
Indices: 81704906--81704944 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
81704896 TTTGTATAAG
81704906 TATCATTAAACATTCAAAATC
1 TATCATTAAACATTCAAAATC
81704927 TATCA-TAAACCA-TCAAAA
1 TATCATTAAA-CATTCAAAA
81704945 CACACATGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.28
Consensus pattern (21 bp):
TATCATTAAACATTCAAAATC
Found at i:81709084 original size:68 final size:67
Alignment explanation
Indices: 81709012--81709161 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
81709002 CATCATGTGT
* * * *
81709012 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
81709074 ATGTAG
62 ATGTAG
** * *
81709080 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
81709145 AG
66 AG
81709147 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
81709162 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:81709117 original size:64 final size:64
Alignment explanation
Indices: 81709036--81709219 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
81709026 AGACATTATG
* *
81709036 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
81709100 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
81709165 AA
63 AA
* * * *
81709167 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
81709220 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:81709396 original size:35 final size:35
Alignment explanation
Indices: 81709357--81709427 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
81709347 GTTATGTGAA
81709357 TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
1 TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
81709392 TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
1 TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
81709427 T
1 T
81709428 TATAAACAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.25, C:0.08, G:0.34, T:0.32
Consensus pattern (35 bp):
TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
Found at i:81710344 original size:2 final size:2
Alignment explanation
Indices: 81710337--81710373 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
81710327 TCATGACATG
81710337 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81710374 GACTAGTCTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:81715779 original size:19 final size:17
Alignment explanation
Indices: 81715732--81715782 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 17
81715722 TATCATTAGC
81715732 TTAAGTTAATTAA-AGA
1 TTAAGTTAATTAATAGA
81715748 TTAAGGTTTAATTAATCATGA
1 TTAA-G-TTAATTAAT-A-GA
81715769 TTAAGTTAATTAAT
1 TTAAGTTAATTAAT
81715783 TAAGCTTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.13
17 1 0.03
18 8 0.27
19 9 0.30
20 2 0.07
21 6 0.20
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (17 bp):
TTAAGTTAATTAATAGA
Found at i:81716943 original size:19 final size:19
Alignment explanation
Indices: 81716921--81716972 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
81716911 TGCTTTATGC
*
81716921 GCCAAGATGCACTTCATGT
1 GCCAGGATGCACTTCATGT
81716940 GCCAGGATGCACTTCATGT
1 GCCAGGATGCACTTCATGT
81716959 GCCAGGATGCACTT
1 GCCAGGATGCACTT
81716973 TGCACAGTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (19 bp):
GCCAGGATGCACTTCATGT
Found at i:81716968 original size:38 final size:38
Alignment explanation
Indices: 81716833--81716972 Score: 104
Period size: 38 Copynumber: 3.7 Consensus size: 38
81716823 GTATGGGATT
* * *
81716833 ATGCACTT-ATGCGCCAGAATGCATTTCGTGTGTCAGG
1 ATGCACTTCATGCGCCAGGATGCACTTCGTGTGCCAGG
* * * * * * *
81716870 ATG-ATCTTCGTGTGCTAGTATGCGCTTTGTGTGCCAAG
1 ATGCA-CTTCATGCGCCAGGATGCACTTCGTGTGCCAGG
*** * * *
81716908 ATATGCTTTATGCGCCAAGATGCACTTCATGTGCCAGG
1 ATGCACTTCATGCGCCAGGATGCACTTCGTGTGCCAGG
*
81716946 ATGCACTTCATGTGCCAGGATGCACTT
1 ATGCACTTCATGCGCCAGGATGCACTT
81716973 TGCACAGTGA
Statistics
Matches: 73, Mismatches: 27, Indels: 5
0.70 0.26 0.05
Matches are distributed among these distances:
36 1 0.01
37 6 0.08
38 66 0.90
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (38 bp):
ATGCACTTCATGCGCCAGGATGCACTTCGTGTGCCAGG
Found at i:81722371 original size:30 final size:29
Alignment explanation
Indices: 81722313--81722521 Score: 153
Period size: 29 Copynumber: 7.3 Consensus size: 29
81722303 AAAAAGTGCA
* *
81722313 TTTGTGGCTATCTGTGTTAAAAGAAAGCC
1 TTTGTGGCTATCTCTGTTAAAAGGAAGCC
* *
81722342 TTTGGGGCTATCTCTATTAAAAAGGAAGCC
1 TTTGTGGCTATCTCTGTT-AAAAGGAAGCC
* * *
81722372 TTTGTGGCGATCTCTTTTAAAAGGAAACC
1 TTTGTGGCTATCTCTGTTAAAAGGAAGCC
*
81722401 TTTGTGGC-AGTCTTTGTTAAAAGGAAGCC
1 TTTGTGGCTA-TCTCTGTTAAAAGGAAGCC
* * * *
81722430 ATTGTGGCAATATCTG-TCAAAGGACA-CC
1 TTTGTGGCTATCTCTGTTAAAAGGA-AGCC
* ** *
81722458 TTTGTGGCGA-GACT-TTGAAAGGAAAGCC
1 TTTGTGGCTATCTCTGTTAAAAGG-AAGCC
* * *
81722486 TTTGTAGCTATCT-T-TGAAAAGGAACACC
1 TTTGTGGCTATCTCTGTTAAAAGGAA-GCC
81722514 TTTGTGGC
1 TTTGTGGC
81722522 ATAACCTAAA
Statistics
Matches: 143, Mismatches: 28, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
27 11 0.08
28 45 0.31
29 61 0.43
30 26 0.18
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (29 bp):
TTTGTGGCTATCTCTGTTAAAAGGAAGCC
Found at i:81722378 original size:59 final size:58
Alignment explanation
Indices: 81722313--81722522 Score: 148
Period size: 59 Copynumber: 3.7 Consensus size: 58
81722303 AAAAAGTGCA
81722313 TTTGTGGCTATCTGTGTTAAAA-GAAAGCCTTTGGGGCTA-TCTCTATTAAAAAGGAAGCC
1 TTTGTGGCTATCTGTGTTAAAAGGAAA-CCTTTGGGGC-AGTCTCTATT-AAAAGGAAGCC
* * * * * *
81722372 TTTGTGGCGATCTCTTTTAAAAGGAAACCTTTGTGGCAGTCTTTGTTAAAAGGAAGCC
1 TTTGTGGCTATCTGTGTTAAAAGGAAACCTTTGGGGCAGTCTCTATTAAAAGGAAGCC
* * * * * * * * *
81722430 ATTGTGGCAATATCTG-TCAAAGGACACCTTTGTGGCGAG--ACT-TTGAAAGGAAAGCC
1 TTTGTGGCTATCTGTGTTAAAAGGAAACCTTTGGGGC-AGTCTCTATTAAAAGG-AAGCC
* * *
81722486 TTTGTAGCTATCT-T-TGAAAAGGAACACCTTTGTGGCA
1 TTTGTGGCTATCTGTGTTAAAAGGAA-ACCTTTGGGGCA
81722523 TAACCTAAAG
Statistics
Matches: 123, Mismatches: 22, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
55 15 0.12
56 26 0.21
57 18 0.15
58 26 0.21
59 34 0.28
60 4 0.03
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (58 bp):
TTTGTGGCTATCTGTGTTAAAAGGAAACCTTTGGGGCAGTCTCTATTAAAAGGAAGCC
Found at i:81722487 original size:28 final size:27
Alignment explanation
Indices: 81722362--81722521 Score: 108
Period size: 28 Copynumber: 5.7 Consensus size: 27
81722352 TCTCTATTAA
* * *
81722362 AAAGGAAGCCTTTGTGGCGATCTCTTTTA
1 AAAGGAAACCTTTGTGGCGA-GTC-TTTG
81722391 AAAGGAAACCTTTGTGGC-AGTCTTTG
1 AAAGGAAACCTTTGTGGCGAGTCTTTG
* * * * * *
81722417 TTAAAAGGAAGCCATTGTGGCAATATCTGTC
1 ---AAAGGAAACCTTTGTGGCGA-GTCTTTG
* *
81722448 AAAGGACACCTTTGTGGCGAGACTTTG
1 AAAGGAAACCTTTGTGGCGAGTCTTTG
* *
81722475 AAAGGAAAGCCTTTGTAGCTA-TCTTTG
1 AAAGGAAA-CCTTTGTGGCGAGTCTTTG
81722502 AAAAGGAACACCTTTGTGGC
1 -AAAGGAA-ACCTTTGTGGC
81722522 ATAACCTAAA
Statistics
Matches: 102, Mismatches: 21, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
26 3 0.03
27 17 0.17
28 43 0.42
29 34 0.33
30 1 0.01
31 4 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (27 bp):
AAAGGAAACCTTTGTGGCGAGTCTTTG
Found at i:81724975 original size:39 final size:39
Alignment explanation
Indices: 81724868--81724987 Score: 154
Period size: 39 Copynumber: 3.1 Consensus size: 39
81724858 ATGATATTGG
* * * *
81724868 GAATATATCCGGACATGAGGTCCGCAAGCTATATGCTGA
1 GAATATATCCGGACTTGAAGTCCGCAGGCTATGTGCTGA
*
81724907 GAATATATCCGAACTTGAAGTCCGCAGGCTATGTGCT-A
1 GAATATATCCGGACTTGAAGTCCGCAGGCTATGTGCTGA
* *
81724945 GAAATATATCCGGACTTGAAGTCCGTAGGCTACGTGCTG-
1 G-AATATATCCGGACTTGAAGTCCGCAGGCTATGTGCTGA
81724984 GAAT
1 GAAT
81724988 GGAATCCGGG
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
38 5 0.07
39 66 0.93
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (39 bp):
GAATATATCCGGACTTGAAGTCCGCAGGCTATGTGCTGA
Found at i:81730732 original size:29 final size:29
Alignment explanation
Indices: 81730699--81730859 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
81730689 CCTTCGAGCT
** * * *
81730699 CGCACACCCAGTGCCGTATTTTTCCAGTA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
81730728 TGCACACTTAGTGCCATATATTTCTAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81730757 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81730786 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81730815 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81730844 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
81730860 ATCTCGTCAC
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:81730733 original size:58 final size:58
Alignment explanation
Indices: 81730670--81730859 Score: 263
Period size: 58 Copynumber: 3.3 Consensus size: 58
81730660 AATTTAAGCC
* *** * * ** * * *
81730670 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGTA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
* *
81730728 TGCACACTTAGTGCCATATATTTCTAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
81730786 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
81730844 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
81730860 ATCTCGTCAC
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 118 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
Found at i:81730761 original size:87 final size:87
Alignment explanation
Indices: 81730670--81730859 Score: 263
Period size: 87 Copynumber: 2.2 Consensus size: 87
81730660 AATTTAAGCC
* * * * * * * *
81730670 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGTATGCACAC
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
*
81730735 TTAGTGCCATATATTTCTAGCA
66 TTAGTGCCATATATTTCCAGCA
* * **
81730757 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
81730822 TTAGTGCCATATATTTCCAGCA
66 TTAGTGCCATATATTTCCAGCA
81730844 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
81730860 ATCTCGTCAC
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
87 90 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (87 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
TTAGTGCCATATATTTCCAGCA
Found at i:81738836 original size:37 final size:34
Alignment explanation
Indices: 81738785--81738904 Score: 134
Period size: 29 Copynumber: 3.7 Consensus size: 34
81738775 GTGCCGTATT
*
81738785 TTTCCAGCATGCACACTTAGTGCCATATATTTTCACA
1 TTTCCAGCACGCACACTTAGTGCCATATATTTT---A
81738822 TTTCCAGCACGCACACTTAGTGCC--ATA---TA
1 TTTCCAGCACGCACACTTAGTGCCATATATTTTA
81738851 TTTCCAGCACGCACACTTAGTGCC--ATA---TA
1 TTTCCAGCACGCACACTTAGTGCCATATATTTTA
81738880 TTTCCAGCACGCACACTTAGTGCCA
1 TTTCCAGCACGCACACTTAGTGCCA
81738905 ATCTCGTCAC
Statistics
Matches: 81, Mismatches: 1, Indels: 9
0.89 0.01 0.10
Matches are distributed among these distances:
29 54 0.67
32 1 0.01
35 3 0.04
37 23 0.28
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (34 bp):
TTTCCAGCACGCACACTTAGTGCCATATATTTTA
Found at i:81738863 original size:29 final size:29
Alignment explanation
Indices: 81738821--81738904 Score: 168
Period size: 29 Copynumber: 2.9 Consensus size: 29
81738811 ATATTTTCAC
81738821 ATTTCCAGCACGCACACTTAGTGCCATAT
1 ATTTCCAGCACGCACACTTAGTGCCATAT
81738850 ATTTCCAGCACGCACACTTAGTGCCATAT
1 ATTTCCAGCACGCACACTTAGTGCCATAT
81738879 ATTTCCAGCACGCACACTTAGTGCCA
1 ATTTCCAGCACGCACACTTAGTGCCA
81738905 ATCTCGTCAC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 55 1.00
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
ATTTCCAGCACGCACACTTAGTGCCATAT
Found at i:81746308 original size:31 final size:31
Alignment explanation
Indices: 81746270--81746333 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
81746260 CCTTTTCATA
81746270 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
81746301 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
81746332 TT
1 TT
81746334 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:81746606 original size:47 final size:48
Alignment explanation
Indices: 81746525--81746643 Score: 154
Period size: 47 Copynumber: 2.5 Consensus size: 48
81746515 GCTTTATCAT
*
81746525 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCGA-AAGCCCTTTCA
1 ATAACTGGA-GCATAAGCC-CTTTTAATAACTGGGGC-ATAAGCCCTTTCA
**
81746574 ATAACTGGAGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGAGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
81746621 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGAGCATAAGCCCTTTT
81746644 GCACTTCCTC
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
46 1 0.02
47 42 0.66
48 8 0.12
49 13 0.20
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGAGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:81746644 original size:24 final size:24
Alignment explanation
Indices: 81746525--81746643 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
81746515 GCTTTATCAT
*
81746525 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
81746550 ATAACTGGGGCGA-AAGCCCTTTCA
1 ATAACTGGGGC-ATAAGCCCTTTTA
*
81746574 ATAACTGGAGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
81746597 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
81746621 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
81746644 GCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 23 0.27
24 50 0.59
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:81746717 original size:20 final size:20
Alignment explanation
Indices: 81746689--81746773 Score: 143
Period size: 20 Copynumber: 4.2 Consensus size: 20
81746679 GCATTTATGA
*
81746689 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
81746709 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
81746729 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
81746749 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
81746769 ACATA
1 ACATA
81746774 CCATATTTAT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 62 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:81746724 original size:11 final size:11
Alignment explanation
Indices: 81746694--81746768 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
81746684 TATGAACATC
81746694 TCATGTGCATA
1 TCATGTGCATA
*
81746705 TCA--TACATA
1 TCATGTGCATA
81746714 TCATGTGCATA
1 TCATGTGCATA
* *
81746725 TCA--TACATG
1 TCATGTGCATA
81746734 TCATGTGCATA
1 TCATGTGCATA
* *
81746745 TCA--TACATG
1 TCATGTGCATA
81746754 TCATGTGCATA
1 TCATGTGCATA
81746765 TCAT
1 TCAT
81746769 ACATACCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:81748357 original size:40 final size:40
Alignment explanation
Indices: 81748283--81748416 Score: 160
Period size: 40 Copynumber: 3.4 Consensus size: 40
81748273 CCGCACCAAG
* * * * * *
81748283 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
81748323 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
81748363 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
81748403 GCCTTCGGGTCTTA
1 GCCTTCGGGTCTTA
81748417 ACACATACAT
Statistics
Matches: 80, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:81758017 original size:39 final size:39
Alignment explanation
Indices: 81757963--81758144 Score: 125
Period size: 40 Copynumber: 4.6 Consensus size: 39
81757953 GAGTCACGTA
** * * *
81757963 CCTTCGGGAATTAACCGGATACAACCACAAGCACAATTG
1 CCTTCGGGTCTTAACCGGATATAACAACTAGCACAATTG
* *** *
81758002 CCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCTTCGGGTCTTAA-CCGGATATAACAACTAGCACAATTG
* *
81758042 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTA-ACCGGATATAACAACTAGCAC-AATTG
* * * *
81758082 CCTTCGGGTCTTAGCCCGGACATAATC-ACTAGCATAAATG
1 CCTTCGGGTCTTA-ACCGGATATAA-CAACTAGCACAATTG
* * *
81758122 CCTTCAGGACTTAGCCCGGATAT
1 CCTTCGGGTCTTA-ACCGGATAT
81758145 CATTCAAATG
Statistics
Matches: 116, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
39 14 0.12
40 99 0.85
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CCTTCGGGTCTTAACCGGATATAACAACTAGCACAATTG
Found at i:81758037 original size:40 final size:40
Alignment explanation
Indices: 81757993--81758144 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
81757983 ACAACCACAA
* * *** *
81757993 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
81758033 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
81758073 GCACGAA-TGCCTTCGGGTCTTAGCCCGGACATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * * *
81758113 GCATAAATGCCTTCAGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
81758145 CATTCAAATG
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 2 0.02
40 92 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:81761035 original size:20 final size:19
Alignment explanation
Indices: 81760994--81761036 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
81760984 GTGCTCGTGG
* *
81760994 GGCCCACACGGCCTATTTT
1 GGCCCACACGGCCTAGTAT
*
81761013 GGCCCACCATGGCCTAGTAT
1 GGCCCA-CACGGCCTAGTAT
81761033 GGCC
1 GGCC
81761037 TCAGCCCATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.16, C:0.37, G:0.26, T:0.21
Consensus pattern (19 bp):
GGCCCACACGGCCTAGTAT
Found at i:81773003 original size:19 final size:19
Alignment explanation
Indices: 81772979--81773104 Score: 192
Period size: 19 Copynumber: 6.9 Consensus size: 19
81772969 AATCATATCT
*
81772979 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
81772998 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
81773016 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
81773033 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
81773051 TCTAAGATT--ATATCATA
1 TCTAAGATTGCATATCATA
*
81773068 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
81773087 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
81773105 TAAAGATTAT
Statistics
Matches: 98, Mismatches: 3, Indels: 12
0.87 0.03 0.11
Matches are distributed among these distances:
16 1 0.01
17 31 0.32
18 31 0.32
19 35 0.36
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:81773037 original size:35 final size:35
Alignment explanation
Indices: 81772979--81773096 Score: 191
Period size: 35 Copynumber: 3.3 Consensus size: 35
81772969 AATCATATCT
81772979 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
81773016 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
81773051 TCTAAGATTATATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
81773087 TCTAAGATTG
1 TCTAAGATTG
81773097 CATATCATTA
Statistics
Matches: 77, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
35 53 0.69
36 14 0.18
37 10 0.13
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:81774036 original size:207 final size:207
Alignment explanation
Indices: 81773501--81774412 Score: 1504
Period size: 207 Copynumber: 4.4 Consensus size: 207
81773491 AAATCTGCTT
* * *
81773501 CTTCAATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* * * *
81773566 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGTACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * ** *
81773631 GGATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCGTCGAATAT
81773695 GGAGACGCCAAA
196 GGAGACGCCAAA
* *
81773707 CTTCGATTTGTTCTCTGACAATACAGAGATGCC-AATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
*
81773771 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTGGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
** *
81773836 GGATCACGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCGTCGAATAT
*
81773901 AGAGACGCCAAA
196 GGAGACGCCAAA
* *
81773913 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* *
81773978 GTGAAAACCAAATCAGCTATGTTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
81774043 GGATCTTGCTTCATTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCGTCGAATAT
81774108 GGAGACGCCAAA
196 GGAGACGCCAAA
** *
81774120 CTTTGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
*
81774185 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
81774250 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCGTCGAATAT
81774315 GGAGACGCCAAA
196 GGAGACGCCAAA
* * * * *
81774327 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTTCTTCATCATAAGCAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
81774392 GTGAAAGCCAAATCAGCTATG
66 GTGAAAGCCAAATCAGCTATG
81774413 CTTTGGTATA
Statistics
Matches: 659, Mismatches: 45, Indels: 3
0.93 0.06 0.00
Matches are distributed among these distances:
205 93 0.14
206 125 0.19
207 441 0.67
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (207 bp):
CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:81774778 original size:85 final size:85
Alignment explanation
Indices: 81774423--81774870 Score: 666
Period size: 85 Copynumber: 5.3 Consensus size: 85
81774413 CTTTGGTATA
* * *
81774423 TTACCCTACTGCTTAGGGG-TTAAGGTGTATCGTCTTCGATCTGCTCCACTACTGCTCA---AGG
1 TTACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
81774484 ATAAGATCTGCAAATTTAACCTG
63 ATAAGATCTGCAAATTTAACCTG
* *
81774507 TTACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCTACTACTGCTTAGGGA-AATA
1 TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAATA
81774571 AGATCTGCAAATTTAACCTG
66 AGATCTGCAAATTTAACCTG
* *
81774591 TTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCATCGATTTGCTCCGCTACTGCTTAGGGAG-
1 TTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGA
*
81774655 ATAAGATCTGC-----GAACCTG
63 ATAAGATCTGCAAATTTAACCTG
* *
81774673 TTACCTTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGAATA
1 TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAATA
81774738 AGATCTGCAAATTTAACCTG
66 AGATCTGCAAATTTAACCTG
*
81774758 TTACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAATA
1 TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAATA
81774823 AGATCTGCAAATTTAACCTG
66 AGATCTGCAAATTTAACCTG
81774843 TTACCCTACTGCTTAGGGGATTAAGGCG
1 TTACCCTACTGCTTAGGGGATTAAGGCG
81774871 CTGAATTTTG
Statistics
Matches: 332, Mismatches: 18, Indels: 27
0.88 0.05 0.07
Matches are distributed among these distances:
79 25 0.08
80 11 0.03
81 1 0.00
82 62 0.19
84 73 0.22
85 125 0.38
87 35 0.11
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (85 bp):
TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAATA
AGATCTGCAAATTTAACCTG
Found at i:81775858 original size:7 final size:7
Alignment explanation
Indices: 81775816--81775856 Score: 57
Period size: 7 Copynumber: 5.7 Consensus size: 7
81775806 GGCCTCTCCA
81775816 TTTTTCT
1 TTTTTCT
81775823 TTTTTCT
1 TTTTTCT
81775830 TTTTTCT
1 TTTTTCT
81775837 TCTTCTTCT
1 T-TT-TTCT
81775846 TTTTT-T
1 TTTTTCT
81775852 TTTTT
1 TTTTT
81775857 TTGCTTTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.19
7 17 0.53
8 4 0.12
9 5 0.16
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTCT
Found at i:81781602 original size:35 final size:35
Alignment explanation
Indices: 81781541--81781658 Score: 182
Period size: 35 Copynumber: 3.3 Consensus size: 35
81781531 AATCATATCT
*
81781541 TCTAAGATTGTATATCATATCGAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
*
81781578 TCTAAGATTGTATCATATCTAAGATTGCATTCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
81781613 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
81781649 TCTAAGATTG
1 TCTAAGATTG
81781659 CATATCATTG
Statistics
Matches: 76, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
35 52 0.68
36 14 0.18
37 10 0.13
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:81781652 original size:54 final size:54
Alignment explanation
Indices: 81781541--81781674 Score: 186
Period size: 54 Copynumber: 2.5 Consensus size: 54
81781531 AATCATATCT
* *
81781541 TCTAAGATTGTATATCATATCGAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCGAAGATTGCAATCATATCTAAGATTGTATCACA
* *
81781595 TCTAAGATTGCAT-TCATATCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATATCGAAGATTGCAATCATATCTAAGATTG--TATCACA
81781649 TCTAAGATTGCATATCAT-T-GAAGATT
1 TCTAAGATTGCATATCATATCGAAGATT
81781675 ATATTTCCAT
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
52 16 0.22
53 20 0.28
54 32 0.44
55 4 0.06
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCGAAGATTGCAATCATATCTAAGATTGTATCACA
Found at i:81781674 original size:17 final size:19
Alignment explanation
Indices: 81781541--81781666 Score: 183
Period size: 19 Copynumber: 6.9 Consensus size: 19
81781531 AATCATATCT
*
81781541 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
*
81781560 TCGAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
81781578 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
81781595 TCTAAGATTGCAT-TCATA
1 TCTAAGATTGCATATCATA
81781613 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
81781630 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
81781649 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
81781667 TGAAGATTAT
Statistics
Matches: 96, Mismatches: 5, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
16 1 0.01
17 31 0.32
18 30 0.31
19 34 0.35
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Done.