Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 271 of 770
Found at i:81785535 original size:26 final size:26
Alignment explanation
Indices: 81785498--81785581 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
81785488 TGATACAAAT
* *
81785498 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
81785524 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
81785550 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
81785576 TGATAA
1 TGATAA
81785582 GAATATCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:81791300 original size:26 final size:26
Alignment explanation
Indices: 81791263--81791346 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
81791253 TGATACAAAT
* *
81791263 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
81791289 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
81791315 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
81791341 TGATAA
1 TGATAA
81791347 GAATTCATGT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:81794693 original size:37 final size:37
Alignment explanation
Indices: 81794640--81794760 Score: 208
Period size: 37 Copynumber: 3.3 Consensus size: 37
81794630 TATAAAAGAA
*
81794640 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
81794677 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
81794714 GTCTTACCCGGTCATAATCTCCACACGTAGTCGTC-G
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
81794750 GTCTCACCCGG
1 GTCTTACCCGG
81794761 AACATATTCC
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 11 0.14
37 70 0.86
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:81803244 original size:68 final size:67
Alignment explanation
Indices: 81803112--81803265 Score: 181
Period size: 68 Copynumber: 2.3 Consensus size: 67
81803102 TGGTCTTATG
*
81803112 TAATATGATGTCATGTTTACTATCTTGGTAAACTTCATATGTTGCCATTGCCTAGCTACAGTCTT
1 TAATATGATGTCATGTTTACTATCTTGG-AAACTTCATATGTTGCCATAGCCTAGCTACAGTCTT
*
81803177 TCA
65 ACA
* **
81803180 CT-ATATGATGTCATGTTTACTATCCTTGCG-GACTTCATATGTTGCCATAG-CTCAGCTATGGT
1 -TAATATGATGTCATGTTTACTAT-CTTG-GAAACTTCATATGTTGCCATAGCCT-AGCTACAGT
81803242 CTTACA
62 CTTACA
81803248 TAATATGATAG-CATGTTT
1 TAATATGAT-GTCATGTTT
81803266 TTCCATGAAC
Statistics
Matches: 75, Mismatches: 5, Indels: 11
0.82 0.05 0.12
Matches are distributed among these distances:
67 3 0.04
68 65 0.87
69 6 0.08
70 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (67 bp):
TAATATGATGTCATGTTTACTATCTTGGAAACTTCATATGTTGCCATAGCCTAGCTACAGTCTTA
CA
Found at i:81803513 original size:40 final size:40
Alignment explanation
Indices: 81803458--81803538 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
81803448 TTCAGTCTGC
81803458 CCATTCATCCAATATGCCAAATTTTCCTATCTTTAACTAA
1 CCATTCATCCAATATGCCAAATTTTCCTATCTTTAACTAA
* *
81803498 CCATTCTTCTAATATGCCAAATTTTCCTATCTTTAACTAA
1 CCATTCATCCAATATGCCAAATTTTCCTATCTTTAACTAA
81803538 C
1 C
81803539 TCGTCAGTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.31, C:0.27, G:0.02, T:0.40
Consensus pattern (40 bp):
CCATTCATCCAATATGCCAAATTTTCCTATCTTTAACTAA
Found at i:81807683 original size:29 final size:30
Alignment explanation
Indices: 81807634--81807693 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
81807624 TGTATACTTG
*
81807634 TATATATAAATTTTGATTTTGTGT-AATTT
1 TATATATAAATTTTGAATTTGTGTCAATTT
*
81807663 TATATATGAAATTTT-AATTTGTTTCAATTT
1 TATATAT-AAATTTTGAATTTGTGTCAATTT
81807693 T
1 T
81807694 TGTAAATCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 14 0.52
30 13 0.48
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (30 bp):
TATATATAAATTTTGAATTTGTGTCAATTT
Found at i:81808864 original size:123 final size:123
Alignment explanation
Indices: 81808653--81808893 Score: 365
Period size: 123 Copynumber: 2.0 Consensus size: 123
81808643 GATACCTCCG
*
81808653 ACAGTATAAAAGACCAAGGAGACCCTTCAATGGTATCATGATATCCCTTTTGGGTATCACGATAT
1 ACAGTATAAAAGACCAAGGAGACCATTCAATGGTATCATGATATCCCTTTTGGGTATCACGATAT
* *
81808718 CCACCTCCCAAGGAAGACACCAAGTTTCTATTCTACTTGAGATATCACGATATATCCA
66 CCACCTCCCAAGGAAGACACCAAGTTTCTATTCTACCTGAGAAATCACGATATATCCA
* * * *
81808776 ACAGTGTAGAAGACCAAGGAGACCATTCAGTGGTATCATGATATTCCTTTTGGGTATCACGATAT
1 ACAGTATAAAAGACCAAGGAGACCATTCAATGGTATCATGATATCCCTTTTGGGTATCACGATAT
** * * * *
81808841 CCACCTCGTAAGGATGACCCCAAGTTTCTATTCTGCCTGAGAAATCGCGATAT
66 CCACCTCCCAAGGAAGACACCAAGTTTCTATTCTACCTGAGAAATCACGATAT
81808894 CCAACCCCAA
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
123 105 1.00
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.27
Consensus pattern (123 bp):
ACAGTATAAAAGACCAAGGAGACCATTCAATGGTATCATGATATCCCTTTTGGGTATCACGATAT
CCACCTCCCAAGGAAGACACCAAGTTTCTATTCTACCTGAGAAATCACGATATATCCA
Found at i:81809174 original size:145 final size:145
Alignment explanation
Indices: 81808776--81809184 Score: 489
Period size: 144 Copynumber: 2.8 Consensus size: 145
81808766 GATATATCCA
* * * *
81808776 ACAGTGTAGAAGACCAAGGAGACCATTCAGTGGTATCATGATATTCCTTTTGGGTATCACGATAT
1 ACAGTGTAGAAGACCAAGGAGACCATTCAGTGGTATCATGATATCCCCTTTGGCTATCGCGATAT
** * * *
81808841 CCACCTCGTAAGGATGACCCCAAGTTTCTATTCTGCCTGAGAAATCGCGATATCCAACCCCAAGA
66 CCACCTCCCAAGGAAGACCCCAAGTTTCTATTCTGCCTGAGATATCACGATATCCAACCCCAAGA
*
81808906 ATAGTGATATCTCTG
131 ATAGTGATACCTCTG
* * * ** *
81808921 ATAAG-GT-GAAGACCAATGAGACCCTTCAGTGGTATTGTGATATCCCCTTTAGCTATCGCGATA
1 A-CAGTGTAGAAGACCAAGGAGACCATTCAGTGGTATCATGATATCCCCTTTGGCTATCGCGATA
* * ** * * *
81808984 TCCACTTCCCAAGGAAGACCCCAAGCTTCTATTCTGCCCAAGATATCCCGATATCTAACCCCTAG
65 TCCACCTCCCAAGGAAGACCCCAAGTTTCTATTCTGCCTGAGATATCACGATATCCAACCCCAAG
*
81809049 AATCGTGATACCTCTG
130 AATAGTGATACCTCTG
* * *
81809065 ACAGTGTAGAAGACCAAGGAGACCTTTCAGTGGTATCATGATATCCCCTTTGGCTATTGTGATAT
1 ACAGTGTAGAAGACCAAGGAGACCATTCAGTGGTATCATGATATCCCCTTTGGCTATCGCGATAT
* * ** * * *
81809130 CGACCTCCCAAGGAAGTCTTCAAGTTTCTATTTTTCCTGGGATATCACGATATCC
66 CCACCTCCCAAGGAAGACCCCAAGTTTCTATTCTGCCTGAGATATCACGATATCC
81809185 TCTTTTGGGT
Statistics
Matches: 217, Mismatches: 44, Indels: 6
0.81 0.16 0.02
Matches are distributed among these distances:
143 2 0.01
144 118 0.54
145 95 0.44
146 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (145 bp):
ACAGTGTAGAAGACCAAGGAGACCATTCAGTGGTATCATGATATCCCCTTTGGCTATCGCGATAT
CCACCTCCCAAGGAAGACCCCAAGTTTCTATTCTGCCTGAGATATCACGATATCCAACCCCAAGA
ATAGTGATACCTCTG
Found at i:81812292 original size:2 final size:2
Alignment explanation
Indices: 81812285--81812325 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
81812275 AAGTACAAAA
81812285 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
81812326 GGCATCTCTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:81815631 original size:30 final size:30
Alignment explanation
Indices: 81815595--81815656 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
81815585 TTTAAGAAAT
**
81815595 TTACCATATTGTTCATTCATGCGGTCTTTC
1 TTACCATATTGTTCATTCATGCCATCTTTC
*
81815625 TTACCATATTGTTCGTTCATGCCATCTTTC
1 TTACCATATTGTTCATTCATGCCATCTTTC
81815655 TT
1 TT
81815657 CACTTTTGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.16, C:0.24, G:0.11, T:0.48
Consensus pattern (30 bp):
TTACCATATTGTTCATTCATGCCATCTTTC
Found at i:81816023 original size:18 final size:18
Alignment explanation
Indices: 81815992--81816027 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
81815982 ATAAATTTTG
81815992 TTAACATCTCTTCTAGAT
1 TTAACATCTCTTCTAGAT
* *
81816010 TTAACTTCTTTTCTAGAT
1 TTAACATCTCTTCTAGAT
81816028 AATAAGGTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.06, T:0.50
Consensus pattern (18 bp):
TTAACATCTCTTCTAGAT
Found at i:81817263 original size:14 final size:14
Alignment explanation
Indices: 81817244--81817283 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
81817234 AACAAAACAA
*
81817244 AAAAATTATAATGT
1 AAAAATTAAAATGT
*
81817258 AAAAATCAAAATGT
1 AAAAATTAAAATGT
*
81817272 TAAAATTAAAAT
1 AAAAATTAAAAT
81817284 AAAAAAAAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (14 bp):
AAAAATTAAAATGT
Found at i:81824252 original size:10 final size:10
Alignment explanation
Indices: 81824237--81824271 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
81824227 TTTGTACATA
81824237 ATATGCCATG
1 ATATGCCATG
81824247 ATATGCACATG
1 ATATGC-CATG
81824258 ATATGCCATG
1 ATATGCCATG
81824268 ATAT
1 ATAT
81824272 ATATGTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:81824261 original size:21 final size:21
Alignment explanation
Indices: 81824232--81824271 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
81824222 ACTAGTTTGT
81824232 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
81824253 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
81824272 ATATGTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:81824345 original size:25 final size:25
Alignment explanation
Indices: 81824317--81824386 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
81824307 GAGGAAGTGC
* *
81824317 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
81824342 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
81824367 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
81824387 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:81824399 original size:24 final size:24
Alignment explanation
Indices: 81824316--81824413 Score: 85
Period size: 25 Copynumber: 4.0 Consensus size: 24
81824306 GGAGGAAGTG
* *
81824316 CAAAAG-GGCTATGCCCCAGTTTAC
1 CAAAAGAGGCTTTGCCCCAG-TTAT
81824340 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAG-TTAT
81824365 CAAAA-AGGGCTTTGCCCCAGTTAT
1 CAAAAGA-GGCTTTGCCCCAGTTAT
* **
81824389 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAGAGGCTTTGCC-CCAGTTAT
81824414 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
24 20 0.31
25 44 0.69
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (24 bp):
CAAAAGAGGCTTTGCCCCAGTTAT
Found at i:81824410 original size:50 final size:50
Alignment explanation
Indices: 81824317--81824411 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
81824307 GAGGAAGTGC
**
81824317 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
81824367 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
81824412 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:81824645 original size:31 final size:31
Alignment explanation
Indices: 81824607--81824690 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
81824597 CGTTTACAGT
81824607 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
81824638 AAAGGCTTTGGCCCAGTGGTATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
81824669 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
81824691 CTGAGATTGA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 4 0.09
31 43 0.91
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:81832180 original size:11 final size:10
Alignment explanation
Indices: 81832158--81832192 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
81832148 TTTGTACGTA
81832158 ATATGCCATG
1 ATATGCCATG
81832168 ATATGCACATG
1 ATATGC-CATG
81832179 ATATGCCATG
1 ATATGCCATG
81832189 ATAT
1 ATAT
81832193 ATATGTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:81832266 original size:25 final size:25
Alignment explanation
Indices: 81832238--81832307 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
81832228 GAGGAACTGC
* * *
81832238 AAAAGGGCTATGCCTCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
81832263 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
81832288 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
81832308 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:81832320 original size:24 final size:24
Alignment explanation
Indices: 81832237--81832334 Score: 76
Period size: 25 Copynumber: 4.0 Consensus size: 24
81832227 GGAGGAACTG
* * *
81832237 CAAAAG-GGCTATGCCTCAGTTTAC
1 CAAAAGAGGCTTTGCCCCAG-TTAT
81832261 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAG-TTAT
81832286 CAAAA-AGGGCTTTGCCCCAGTTAT
1 CAAAAGA-GGCTTTGCCCCAGTTAT
* **
81832310 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAGAGGCTTTGCC-CCAGTTAT
81832335 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
24 20 0.32
25 43 0.68
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
CAAAAGAGGCTTTGCCCCAGTTAT
Found at i:81832563 original size:31 final size:31
Alignment explanation
Indices: 81832528--81832611 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
81832518 CGTTTACAGT
81832528 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
81832559 AAAGGCTTCGGCCTAGTGGTATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
81832590 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
81832612 CTAAGATTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 4 0.08
31 44 0.92
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:81835873 original size:28 final size:28
Alignment explanation
Indices: 81835827--81835895 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
81835817 TTTAAAACCC
*
81835827 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
81835854 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
81835882 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
81835896 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:81837544 original size:20 final size:20
Alignment explanation
Indices: 81837521--81837558 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
81837511 CACATCCAAA
*
81837521 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
81837541 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
81837559 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:81841491 original size:27 final size:26
Alignment explanation
Indices: 81841461--81841521 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
81841451 TTTAAAACCC
81841461 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTATATCGGTAA-TTTGCTCTT
*
81841488 TA-GGGTAATTTCGGTAATTTGCTCTT
1 TAGGGGT-ATATCGGTAATTTGCTCTT
81841514 TAGGGGTA
1 TAGGGGTA
81841522 ATTTCGTGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
26 16 0.52
27 15 0.48
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.43
Consensus pattern (26 bp):
TAGGGGTATATCGGTAATTTGCTCTT
Found at i:81841522 original size:27 final size:28
Alignment explanation
Indices: 81841461--81841527 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
81841451 TTTAAAACCC
*
81841461 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
81841488 TA-GGGTAATTTCGGTAA-TTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
81841514 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
81841528 TGATCTACGC
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
26 15 0.41
27 22 0.59
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:81843157 original size:20 final size:20
Alignment explanation
Indices: 81843134--81843171 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
81843124 CACATCCAAA
*
81843134 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
81843154 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
81843172 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:81847124 original size:28 final size:28
Alignment explanation
Indices: 81847084--81847142 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
81847074 TAGGGGTATA
*
81847084 TCGGTAATTTTGCTCTTTAGGGCTAATT
1 TCGGTAATATTGCTCTTTAGGGCTAATT
*
81847112 TCGGTAATATTGCTCTTTAGGGGTAATT
1 TCGGTAATATTGCTCTTTAGGGCTAATT
81847140 TCG
1 TCG
81847143 TGATCTACGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.19, C:0.14, G:0.24, T:0.44
Consensus pattern (28 bp):
TCGGTAATATTGCTCTTTAGGGCTAATT
Found at i:81848799 original size:20 final size:20
Alignment explanation
Indices: 81848776--81848813 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
81848766 CACATCCAAA
*
81848776 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
81848796 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
81848814 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:81864596 original size:25 final size:26
Alignment explanation
Indices: 81864568--81864618 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
81864558 TTTCACAAAT
81864568 ATTATCATAAAAATAAATA-TATTTA
1 ATTATCATAAAAATAAATATTATTTA
*
81864593 ATTATCATAAAGATAAATATTATTTA
1 ATTATCATAAAAATAAATATTATTTA
81864619 TCTATATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (26 bp):
ATTATCATAAAAATAAATATTATTTA
Found at i:81876050 original size:80 final size:80
Alignment explanation
Indices: 81875966--81876116 Score: 187
Period size: 80 Copynumber: 1.9 Consensus size: 80
81875956 TATGGTAACC
* * * *
81875966 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
81876030 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
81876046 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
81876111 CCGGAT
66 CCGGAT
81876117 TAAATTTCCA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.02
80 58 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:81876056 original size:40 final size:38
Alignment explanation
Indices: 81876007--81876116 Score: 132
Period size: 40 Copynumber: 2.8 Consensus size: 38
81875997 ATCACGATTT
*
81876007 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
81876047 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
81876087 GCACAATTGCCTTCGGGTCTTAACCCGGAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGAT
81876117 TAAATTTCCA
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 58 0.92
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:81878898 original size:6 final size:6
Alignment explanation
Indices: 81878887--81878977 Score: 62
Period size: 6 Copynumber: 14.8 Consensus size: 6
81878877 TTACCTAATA
* * *
81878887 CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT TTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT
* * *
81878936 ATG-TCAC CTGATT CTGATT CTGATT CTAATT CT-AGTT CTGAT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
81878978 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:81878904 original size:31 final size:31
Alignment explanation
Indices: 81878858--81878969 Score: 125
Period size: 31 Copynumber: 3.6 Consensus size: 31
81878848 TTGCATTCAC
* *
81878858 ATTCTGATTTTTGATTCTATTACCTAATACTG
1 ATTCTGA-TTCTGATTCTATTACCTGATACTG
* *
81878890 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTATTACCTGATACTG
* * * * *
81878921 ATTTTGATTCTGATTATGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTATTACCTGATACTG
*
81878952 ATTCTGATTCTAATTCTA
1 ATTCTGATTCTGATTCTA
81878970 GTTCTGATAA
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
31 62 0.90
32 7 0.10
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATTACCTGATACTG
Found at i:81878946 original size:25 final size:25
Alignment explanation
Indices: 81878885--81878960 Score: 86
Period size: 25 Copynumber: 3.0 Consensus size: 25
81878875 TATTACCTAA
*
81878885 TACTGATTCTGATTTTGATTCTG-T
1 TACTGATACTGATTTTGATTCTGAT
81878909 TACCTGATACTGATTTTGATTCTGAT
1 TA-CTGATACTGATTTTGATTCTGAT
*
81878935 TA-TG-TCACCTGATTCTGATTCTGAT
1 TACTGAT-A-CTGATTTTGATTCTGAT
81878960 T
1 T
81878961 CTAATTCTAG
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
23 1 0.02
24 5 0.11
25 37 0.80
26 3 0.07
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.49
Consensus pattern (25 bp):
TACTGATACTGATTTTGATTCTGAT
Found at i:81881970 original size:29 final size:29
Alignment explanation
Indices: 81881928--81882059 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
81881918 ACGTGCGAAT
*
81881928 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
81881957 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
81881986 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
81882015 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
81882044 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
81882060 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:81889769 original size:29 final size:29
Alignment explanation
Indices: 81889736--81889896 Score: 223
Period size: 29 Copynumber: 5.6 Consensus size: 29
81889726 GTGACGAGAT
81889736 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
81889765 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
81889794 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
81889823 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ** *
81889852 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
81889881 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
81889897 AGCTCGAAGG
Statistics
Matches: 120, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 120 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:81889924 original size:87 final size:87
Alignment explanation
Indices: 81889732--81889916 Score: 219
Period size: 87 Copynumber: 2.1 Consensus size: 87
81889722 TATGGTGACG
* * * ** * *
81889732 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATG
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATACG
* *
81889796 GCACTAAGTGTGCGTGCTGGAA
66 GCACTAAGTGTGCGAGCTCGAA
* * *
81889818 ATATAAGGCACTAAGTGTGCATGCTGGAAAAATATGACACTATGTGTGCAAGCTGGAAAAATACG
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATACG
**
81889883 GCACTGGGTGTGCGAGCTCGAA
66 GCACTAAGTGTGCGAGCTCGAA
* *
81889905 GGGTATGGCACT
1 AGATATGGCACT
81889917 GTGTGTGCGG
Statistics
Matches: 80, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
86 3 0.04
87 77 0.96
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.24
Consensus pattern (87 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATACG
GCACTAAGTGTGCGAGCTCGAA
Found at i:81894762 original size:43 final size:40
Alignment explanation
Indices: 81894680--81894831 Score: 135
Period size: 42 Copynumber: 3.6 Consensus size: 40
81894670 CTACACCAAA
* * * *
81894680 GCCATATCTCAAATATGGTCTTACATGAGATATAGTATCGAT
1 GCCATATC-CCAATATGGTCTTACACGAAATCTA-TATCGAT
*
81894722 GCCAATAGCCCAACTATGGTCTTACACGAAATCTCATATCGAT
1 GCC-ATATCCCAA-TATGGTCTTACACGAAATCT-ATATCGAT
* * *
81894765 TCCATATTCCAGATATGGTCTTACAC-AAAGTCTTATATTGAT
1 GCCATATCCCA-ATATGGTCTTACACGAAA-TC-TATATCGAT
*
81894807 GCCATATCCCTGATATGGTCTTACA
1 GCCATATCCC-AATATGGTCTTACA
81894832 AATAGTCTCG
Statistics
Matches: 91, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
41 3 0.03
42 55 0.60
43 32 0.35
44 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.32
Consensus pattern (40 bp):
GCCATATCCCAATATGGTCTTACACGAAATCTATATCGAT
Found at i:81894790 original size:42 final size:42
Alignment explanation
Indices: 81894715--81894840 Score: 141
Period size: 42 Copynumber: 3.0 Consensus size: 42
81894705 TGAGATATAG
*
81894715 TATCGATGCCAATAGCCCA-ACTATGGTCTTACACGAAA-TCTCA
1 TATCGATGCC-ATATCCCAGA-TATGGTCTTACAC-AAAGTCTCA
* * *
81894758 TATCGATTCCATATTCCAGATATGGTCTTACACAAAGTCTTA
1 TATCGATGCCATATCCCAGATATGGTCTTACACAAAGTCTCA
* *
81894800 TATTGATGCCATATCCCTGATATGGTCTTACA-AATAGTCTC
1 TATCGATGCCATATCCCAGATATGGTCTTACACAA-AGTCTC
81894841 GGTAACCCTA
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
41 5 0.07
42 56 0.79
43 10 0.14
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (42 bp):
TATCGATGCCATATCCCAGATATGGTCTTACACAAAGTCTCA
Found at i:81897720 original size:22 final size:22
Alignment explanation
Indices: 81897694--81897737 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
81897684 ATATTAAATA
81897694 ATTTATTAAAATAATAATTTAT
1 ATTTATTAAAATAATAATTTAT
* *
81897716 ATTTATTATATTAATAATTTAT
1 ATTTATTAAAATAATAATTTAT
81897738 TATATGACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTTATTAAAATAATAATTTAT
Found at i:81912153 original size:50 final size:49
Alignment explanation
Indices: 81911908--81912153 Score: 293
Period size: 50 Copynumber: 5.0 Consensus size: 49
81911898 ACACTGCTGT
* *
81911908 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGCCATCGGCTTG--A
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATA
* * * ** *
81911955 TAT--GTGTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACCGACA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGATA
* * * *
81912003 GATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCTTGATA
*
81912053 TATGAGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCTTCGATA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTT-GATA
* *
81912103 TATGAGAGCCAGTGTAAGACCATATCTGGGATATGGCATCGGCATTGATA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGATA
81912153 T
1 T
81912154 GTGTAAGATT
Statistics
Matches: 171, Mismatches: 20, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
45 34 0.20
46 1 0.01
47 3 0.02
48 3 0.02
49 3 0.02
50 123 0.72
51 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (49 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATA
Found at i:81918257 original size:45 final size:45
Alignment explanation
Indices: 81918190--81918358 Score: 194
Period size: 45 Copynumber: 3.6 Consensus size: 45
81918180 TATGTGAGCC
* *
81918190 AGTGTAAGACCATGTTTGGGACATGGCATCGGCTTGATATGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGATATGTGTT
* * * * * * *
81918235 AGTGTAATACTATGTCTAGGACATGGCATTGGCACTGACAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTG--ATAT--GTGTT
* *
81918285 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGATATGTGTT
81918330 AGTGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
81918359 GGCACCGACA
Statistics
Matches: 101, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 59 0.58
46 2 0.02
47 3 0.03
48 3 0.03
49 3 0.03
50 31 0.31
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGATATGTGTT
Found at i:81918300 original size:50 final size:50
Alignment explanation
Indices: 81918234--81918408 Score: 182
Period size: 50 Copynumber: 3.6 Consensus size: 50
81918224 TGATATGTGT
* *
81918234 TAGTGTAATACTATGTCTAGGACATGGCATTGGCACTGACAGATGAGAGC
1 TAGTGTAAGACCATGTCTAGGACATGGCATTGGCACTGACAGATGAGAGC
* ** * * *
81918284 TAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTG--ATATGTG-TC
1 TAGTGTAAGACCATGTCTAGGACATGGCATTGGCACTGACAGATGAGAGC
* *
81918330 -AGTGTAAGACCATGTCTGGGACATGGCA-TGGCACCGACAGATGAGAGC
1 TAGTGTAAGACCATGTCTAGGACATGGCATTGGCACTGACAGATGAGAGC
* * *
81918378 CAATGTAAGACCATTTTCTAGGACATGGCAT
1 TAGTGTAAGACCA-TGTCTAGGACATGGCAT
81918409 CAGCCTCGAT
Statistics
Matches: 101, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
44 2 0.02
45 30 0.30
46 1 0.01
47 10 0.10
48 1 0.01
49 14 0.14
50 43 0.43
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (50 bp):
TAGTGTAAGACCATGTCTAGGACATGGCATTGGCACTGACAGATGAGAGC
Found at i:81918353 original size:95 final size:94
Alignment explanation
Indices: 81918185--81918420 Score: 337
Period size: 95 Copynumber: 2.5 Consensus size: 94
81918175 GCTGTTATGT
* * * * * *
81918185 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCTTGATATGTGTTAGTGTAATACTATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTGATATGTGTCAGTGTAAGACCATGT
*
81918250 CTAGGACATGGCATTGGCACTGACAGATGA
66 CTAGGACATGGCA-TGGCACCGACAGATGA
*
81918280 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTGATATGTGTCAGTGTAAGACCATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTGATATGTGTCAGTGTAAGACCATGT
*
81918345 CTGGGACATGGCATGGCACCGACAGATGA
66 CTAGGACATGGCATGGCACCGACAGATGA
* * *
81918374 GAGCCAATGTAAGACCATTTTCTAGGACATGGCATCAGCCTCGATAT
1 GAGCCAGTGTAAGACCA-TGTCTGGGACATGGCATCAGCCT-GATAT
81918421 ATGAGAACTA
Statistics
Matches: 126, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
94 30 0.24
95 91 0.72
96 5 0.04
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (94 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTGATATGTGTCAGTGTAAGACCATGT
CTAGGACATGGCATGGCACCGACAGATGA
Found at i:81920647 original size:49 final size:49
Alignment explanation
Indices: 81920573--81920747 Score: 251
Period size: 49 Copynumber: 3.5 Consensus size: 49
81920563 TGAGGTCATG
*
81920573 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
* * * * * * *
81920622 TGTGTAGTACTAAGTGCAGGTTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GGTCGCA
*
81920673 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
81920722 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
81920748 TGCGTAGTAG
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
49 65 0.60
50 4 0.04
51 39 0.36
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:81920747 original size:100 final size:100
Alignment explanation
Indices: 81920572--81920753 Score: 337
Period size: 100 Copynumber: 1.8 Consensus size: 100
81920562 ATGAGGTCAT
* *
81920572 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACTAAGT
*
81920637 GCAGGTTACTATGCGTACCCGATAACTTCGATCAC
66 GCAGGCTACTATGCGTACCCGATAACTTCGATCAC
81920672 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACTAAGT
81920737 GCAGGCTACTATGCGTA
66 GCAGGCTACTATGCGTA
81920754 GTAGATAGCC
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACTAAGT
GCAGGCTACTATGCGTACCCGATAACTTCGATCAC
Found at i:81922615 original size:40 final size:40
Alignment explanation
Indices: 81922552--81922736 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
81922542 GCTACTCGTT
*
81922552 CAAATG-CTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
81922591 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
81922631 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
81922671 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
81922712 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81922737 CATCATTCGA
Statistics
Matches: 133, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
39 9 0.07
40 111 0.83
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81930897 original size:40 final size:39
Alignment explanation
Indices: 81930759--81930935 Score: 144
Period size: 40 Copynumber: 4.4 Consensus size: 39
81930749 GAATCACGTA
* **
81930759 CCTTCGGAGTTTAA-CCGGATATAGCT-ACTCGTTCAAATG
1 CCTTCGGA-CTTAACCCGGATATAG-TAACTCGCACAAATG
* * * * *
81930798 TCTTCGGGACATAGCCCAGTTATAGTAACTCGCACAAATG
1 CCTTC-GGACTTAACCCGGATATAGTAACTCGCACAAATG
*
81930838 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTC-GGACTTAACCCGGATATAGTAACTCGCACAAATG
** * *
81930878 CCTTCGGATCTTAGTCCGGATATAGTCACTTTGCACAAA-G
1 CCTTCGGA-CTTAACCCGGATATAGTAAC-TCGCACAAATG
*
81930918 CCTTCGGGACTTAGCCCG
1 CCTTC-GGACTTAACCCG
81930936 AACATCATTC
Statistics
Matches: 112, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
39 10 0.09
40 91 0.81
41 11 0.10
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (39 bp):
CCTTCGGACTTAACCCGGATATAGTAACTCGCACAAATG
Found at i:81935858 original size:40 final size:40
Alignment explanation
Indices: 81935806--81936033 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
81935796 GCCACTAGCT
* *
81935806 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
81935846 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
81935885 CAAATTCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
81935925 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * ** * *
81935965 CGAATGCCTTCAGGACTTAGCCCGG-AATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
81936005 CAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 CAAATGCCT-TCGGGACTTAGCCCGGTTAT
81936034 CATCCGAACA
Statistics
Matches: 164, Mismatches: 20, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
39 38 0.23
40 125 0.76
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:81935904 original size:79 final size:80
Alignment explanation
Indices: 81935806--81935990 Score: 264
Period size: 79 Copynumber: 2.3 Consensus size: 80
81935796 GCCACTAGCT
* ** * *
81935806 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
81935871 -TATAATAACTCGCA
66 ATATAATAACTCGCA
* *
81935885 CAAATTCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
81935950 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
* *
81935965 CGAATGCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81935991 ATTAGCCACT
Statistics
Matches: 93, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 58 0.62
80 35 0.38
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:81936018 original size:80 final size:78
Alignment explanation
Indices: 81935806--81936030 Score: 249
Period size: 79 Copynumber: 2.8 Consensus size: 78
81935796 GCCACTAGCT
* * * * *
81935806 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCAGGACTTAGCCCGGATAT-ATAGCTAGCACAAATGCCTTCGGGACTTAGCCCGG
81935871 TATAATAACTCGCA
65 TATAATAACTCGCA
* * * *
81935885 CAAATTCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCAGGACTTAGCCCGGATAT-ATAGCTAGCACAAATGCCTTCGGGACTTAGCCCGG
* *
81935950 ATATAGTAGCTCGCA
65 -TATAATAACTCGCA
* *
81935965 CGAATGCCTTCAGGACTTAGCCCGGA-AT-TAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCC
1 CAAATGCCTTCAGGACTTAGCCCGGATATATAG---CTAGCACAAATGCCT-TCGGGACTTAGCC
81936027 CGGT
62 CGGT
81936031 TATCATCCGA
Statistics
Matches: 126, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
77 3 0.02
79 63 0.50
80 60 0.48
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCAGGACTTAGCCCGGATATATAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCGCA
Found at i:81936818 original size:40 final size:40
Alignment explanation
Indices: 81936770--81936854 Score: 161
Period size: 40 Copynumber: 2.1 Consensus size: 40
81936760 ACACTTAACA
*
81936770 AAGCTTCCATTCGAACTCATTAGTGAGTATCAATTAACCT
1 AAGCTTCCATTCAAACTCATTAGTGAGTATCAATTAACCT
81936810 AAGCTTCCATTCAAACTCATTAGTGAGTATCAATTAACCT
1 AAGCTTCCATTCAAACTCATTAGTGAGTATCAATTAACCT
81936850 AAGCT
1 AAGCT
81936855 ATCTTTTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (40 bp):
AAGCTTCCATTCAAACTCATTAGTGAGTATCAATTAACCT
Found at i:81937876 original size:15 final size:15
Alignment explanation
Indices: 81937858--81937890 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
81937848 TGGATTCTCG
81937858 TATCATGGATTTCTT
1 TATCATGGATTTCTT
*
81937873 TATCTTGGATTTCTT
1 TATCATGGATTTCTT
81937888 TAT
1 TAT
81937891 TCTGGGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (15 bp):
TATCATGGATTTCTT
Found at i:81940838 original size:50 final size:49
Alignment explanation
Indices: 81940661--81940892 Score: 297
Period size: 49 Copynumber: 4.7 Consensus size: 49
81940651 TCTATTGTGA
* *
81940661 GGTCACGTGTGTAGTACTAAGTCCAGGCTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
* * *
81940710 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA--TGCATACGCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAT-CG-GATAA-TT
* * **
81940760 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
81940810 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
* * *
81940860 GGTCGCATGTGTAGTACCAAGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
81940893 TGCGTACTAG
Statistics
Matches: 157, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
47 3 0.02
48 2 0.01
49 65 0.41
50 49 0.31
51 33 0.21
52 1 0.01
53 4 0.03
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
Found at i:81947644 original size:29 final size:28
Alignment explanation
Indices: 81947521--81947645 Score: 115
Period size: 29 Copynumber: 4.4 Consensus size: 28
81947511 GTTACAATAG
* *
81947521 CCACAAAAACTTCCTTTAACAGAGATAA
1 CCACAAAGACTTCCTTTAACAAAGATAA
* * **
81947549 CCACAAAGGCTTCTTTTTAACAAAGATTG
1 CCACAAAGACTTC-CTTTAACAAAGATAA
* * * * **
81947578 CCACAGAGGCTTCTTTATAACAGAGATCG
1 CCACAAAGACTTCCTT-TAACAAAGATAA
81947607 CCACAAAGACTTCCTTTAATCAAAGATAA
1 CCACAAAGACTTCCTTTAA-CAAAGATAA
81947636 CCACAAAGAC
1 CCACAAAGAC
81947646 ACTTCTTCAG
Statistics
Matches: 79, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
28 17 0.22
29 62 0.78
ACGTcount: A:0.40, C:0.25, G:0.12, T:0.23
Consensus pattern (28 bp):
CCACAAAGACTTCCTTTAACAAAGATAA
Found at i:81960635 original size:31 final size:33
Alignment explanation
Indices: 81960588--81960649 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
81960578 CTTGAACAAA
*
81960588 ATCTTGAATTTGGGTAAGAAAAA-TGAAGAAGC
1 ATCTTGAATTTGGGTAAAAAAAACTGAAGAAGC
81960620 ATCTTGAA-TTGGGTAAAAAAAACTGAAGAA
1 ATCTTGAATTTGGGTAAAAAAAACTGAAGAA
81960650 ACAATTCATG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 13 0.46
32 15 0.54
ACGTcount: A:0.47, C:0.06, G:0.23, T:0.24
Consensus pattern (33 bp):
ATCTTGAATTTGGGTAAAAAAAACTGAAGAAGC
Found at i:81962890 original size:19 final size:20
Alignment explanation
Indices: 81962850--81962894 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
81962840 GTATGCTAAC
* *
81962850 AAATAATTTAAAAATTACAA
1 AAATAATATAAAAAGTACAA
81962870 AAATAATATAAAAAGTA-AA
1 AAATAATATAAAAAGTACAA
81962889 AAATAA
1 AAATAA
81962895 GGAGTACATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (20 bp):
AAATAATATAAAAAGTACAA
Found at i:81963215 original size:73 final size:73
Alignment explanation
Indices: 81963128--81963462 Score: 313
Period size: 73 Copynumber: 4.6 Consensus size: 73
81963118 CCGACCTTTA
* * * * * * *
81963128 AAAAAGGTTAGGATAGACCTAGTC-AAGGCCAATCTTTGAAAAAGGTTAGGATAAACCCATATAA
1 AAAAAGGTTGGGATAGACCTAGTCTAAGG-CAACCCTTAAAAAAGGTTAGGATAGACTCATTTAA
81963192 GACAACCTT
65 GACAACCTT
** * *
81963201 AAAAAGGTTGGGATAGGTC-AGTCTAAGGCAACCCTTAAAAAAGGTT-GAGATCGACTCGTTTAA
1 AAAAAGGTTGGGATAGACCTAGTCTAAGGCAACCCTTAAAAAAGGTTAG-GATAGACTCATTTAA
* *
81963264 GGCAACCTC
65 GACAACCTT
* * ** * *
81963273 AAAAAGGTTGGGATAAACCTTA-TCTAAGGTAATTCTTGAAAAAGGTTGGGATAGACTCATTTAA
1 AAAAAGGTTGGGATAGACC-TAGTCTAAGGCAACCCTTAAAAAAGGTTAGGATAGACTCATTTAA
*
81963337 GGCAACCTT
65 GACAACCTT
* * * * *
81963346 AAAAAGGTTTGGATAGACATTGTCTAAGGCAACCCTTAAAAAAGGTTAGGATAGACTCGTCTAA-
1 AAAAAGGTTGGGATAGACCTAGTCTAAGGCAACCCTTAAAAAAGGTTAGGATAGACTCATTTAAG
*
81963410 AGCAACCCT
66 A-CAACCTT
* * * *
81963419 AAAAAGGCTGGGATAGACCGT-GTCTAAAGCAACCTTTACAAAAG
1 AAAAAGGTTGGGATAGACC-TAGTCTAAGGCAACCCTTAAAAAAG
81963463 TTGAGATAAA
Statistics
Matches: 212, Mismatches: 42, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
71 1 0.00
72 53 0.25
73 155 0.73
74 3 0.01
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (73 bp):
AAAAAGGTTGGGATAGACCTAGTCTAAGGCAACCCTTAAAAAAGGTTAGGATAGACTCATTTAAG
ACAACCTT
Found at i:81963247 original size:37 final size:36
Alignment explanation
Indices: 81963128--81963608 Score: 256
Period size: 35 Copynumber: 13.3 Consensus size: 36
81963118 CCGACCTTTA
* *
81963128 AAAAAGGTTAGGATAGAC-CTAGTC-AAGGCCAATCTTT
1 AAAAAGGTTGGGATAGACTC-AGTCTAAGG-CAA-CCTT
* * * * *
81963165 GAAAAAGGTTAGGATAAACCCA-TATAAGACAACCTT
1 -AAAAAGGTTGGGATAGACTCAGTCTAAGGCAACCTT
*
81963201 AAAAAGGTTGGGATAG-GTCAGTCTAAGGCAACCCTT
1 AAAAAGGTTGGGATAGACTCAGTCTAAGGCAA-CCTT
* * * *
81963237 AAAAAAGGTTGAGATCGACTC-GTTTAAGGCAACCTC
1 -AAAAAGGTTGGGATAGACTCAGTCTAAGGCAACCTT
* * * *
81963273 AAAAAGGTTGGGATAAACCTTA-TCTAAGGTAATTCTT
1 AAAAAGGTTGGGATAGA-CTCAGTCTAAGGCAA-CCTT
*
81963310 GAAAAAGGTTGGGATAGACTCA-TTTAAGGCAACCTT
1 -AAAAAGGTTGGGATAGACTCAGTCTAAGGCAACCTT
* *
81963346 AAAAAGGTTTGGATAGACAT-TGTCTAAGGCAACCCTT
1 AAAAAGGTTGGGATAGAC-TCAGTCTAAGGCAA-CCTT
* * *
81963383 AAAAAAGGTTAGGATAGACTC-GTCTAAAGCAACCCT
1 -AAAAAGGTTGGGATAGACTCAGTCTAAGGCAACCTT
* * *
81963419 AAAAAGGCTGGGATAGAC-CGTGTCTAAAGCAACCTTT
1 AAAAAGGTTGGGATAGACTC-AGTCTAAGGCAACC-TT
* * ** *
81963456 ACAAAA-GTTGAGATAAAGC-C-GTCTAATACAACTTT
1 A-AAAAGGTTGGGATAGA-CTCAGTCTAAGGCAACCTT
** * * * * *
81963491 AAAAAGGTTAAGACATAC-CTTGCCTAAGACAACCTTT
1 AAAAAGGTTGGGATAGACTC-AGTCTAAGGCAACC-TT
** * * * *
81963528 AAAAAAATTAGGATAAAC-CCGTCTAAGGCAGCCTT
1 AAAAAGGTTGGGATAGACTCAGTCTAAGGCAACCTT
* * * * *
81963563 TAAAAGGTTGGGATAAACTCA-TTTAAGACAATCTT
1 AAAAAGGTTGGGATAGACTCAGTCTAAGGCAACCTT
81963598 AAAAAGGTTGG
1 AAAAAGGTTGG
81963609 AATAAGTACG
Statistics
Matches: 350, Mismatches: 68, Indels: 53
0.74 0.14 0.11
Matches are distributed among these distances:
34 9 0.03
35 116 0.33
36 80 0.23
37 82 0.23
38 62 0.18
39 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.24
Consensus pattern (36 bp):
AAAAAGGTTGGGATAGACTCAGTCTAAGGCAACCTT
Found at i:81963431 original size:146 final size:145
Alignment explanation
Indices: 81963163--81963433 Score: 386
Period size: 146 Copynumber: 1.9 Consensus size: 145
81963153 AGGCCAATCT
*
81963163 TTGAAAAAGGTTAGGATAAACCCATATAAGACAACCTTAAAAAGGTTGGGATAGGTCAGTCTAAG
1 TTGAAAAAGGTTAGGATAAACCCATATAAGACAACCTTAAAAAGGTTGGGATAGGACAGTCTAAG
* * * *
81963228 GCAACCCTTAAAAAAGGTTGAGATCGACTCGTTTAAGGCAACCTCAAAAAGGTTGGGATAAACCT
66 GCAACCCTTAAAAAAGGTTGAGATAGACTCGTCTAAAGCAACCTCAAAAAGGCTGGGATAAACCT
81963293 TATCTAAGGTAATTC
131 TATCTAAGGTAATTC
* * * * * *
81963308 TTGAAAAAGGTTGGGATAGACTCATTTAAGGCAACCTTAAAAAGGTTTGGATA-GACATTGTCTA
1 TTGAAAAAGGTTAGGATAAACCCATATAAGACAACCTTAAAAAGGTTGGGATAGGACA--GTCTA
81963372 AGGCAACCCTTAAAAAAGGTT-AGGATAGACTCGTCTAAAGCAACC-CTAAAAAGGCTGGGATA
64 AGGCAACCCTTAAAAAAGGTTGA-GATAGACTCGTCTAAAGCAACCTC-AAAAAGGCTGGGATA
81963434 GACCGTGTCT
Statistics
Matches: 111, Mismatches: 11, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
144 3 0.03
145 49 0.44
146 59 0.53
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.24
Consensus pattern (145 bp):
TTGAAAAAGGTTAGGATAAACCCATATAAGACAACCTTAAAAAGGTTGGGATAGGACAGTCTAAG
GCAACCCTTAAAAAAGGTTGAGATAGACTCGTCTAAAGCAACCTCAAAAAGGCTGGGATAAACCT
TATCTAAGGTAATTC
Found at i:81963462 original size:146 final size:145
Alignment explanation
Indices: 81963157--81963499 Score: 381
Period size: 145 Copynumber: 2.4 Consensus size: 145
81963147 TAGTCAAGGC
* * *
81963157 CAATCTTTGAAAAAGGTTAGGATAAACCCATATAAGACAACCTTAAAAAGGTTGGGATAGGTCAG
1 CAATCCTTGAAAAAGGTTGGGATAAACCCATATAAGACAACCTTAAAAAGGTTGGGATAGGACAG
* * * *
81963222 TCTAAGGCAACCCTTAAAAAAGGTTGAGATCGACTCGTTTAAGGCAACCTCAAAAAGGTTGGGAT
66 TCTAAGGCAACCCTTAAAAAAGGTTGAGATAGACTCGTCTAAAGCAACCTCAAAAAGGCTGGGAT
* *
81963287 AAACCTTATCTAAGG
131 AAACCGTATCTAAAG
* * * * * * *
81963302 TAATTCTTGAAAAAGGTTGGGATAGACTCATTTAAGGCAACCTTAAAAAGGTTTGGATA-GACAT
1 CAATCCTTGAAAAAGGTTGGGATAAACCCATATAAGACAACCTTAAAAAGGTTGGGATAGGACA-
81963366 TGTCTAAGGCAACCCTTAAAAAAGGTT-AGGATAGACTCGTCTAAAGCAACC-CTAAAAAGGCTG
65 -GTCTAAGGCAACCCTTAAAAAAGGTTGA-GATAGACTCGTCTAAAGCAACCTC-AAAAAGGCTG
* *
81963429 GGATAGACCGTGTCTAAAG
127 GGATAAACCGTATCTAAAG
* * * * * * *
81963448 CAA-CCTTTACAAAA-GTTGAGATAAAGCCGTCTAATACAACTTTAAAAAGGTT
1 CAATCCTTGA-AAAAGGTTGGGATAAACCCATATAAGACAACCTTAAAAAGGTT
81963500 AAGACATACC
Statistics
Matches: 163, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
144 3 0.02
145 85 0.52
146 75 0.46
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.24
Consensus pattern (145 bp):
CAATCCTTGAAAAAGGTTGGGATAAACCCATATAAGACAACCTTAAAAAGGTTGGGATAGGACAG
TCTAAGGCAACCCTTAAAAAAGGTTGAGATAGACTCGTCTAAAGCAACCTCAAAAAGGCTGGGAT
AAACCGTATCTAAAG
Found at i:81965920 original size:15 final size:15
Alignment explanation
Indices: 81965900--81965931 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
81965890 TTGAAGACCC
81965900 TAAGAGCACCTACCT
1 TAAGAGCACCTACCT
*
81965915 TAAGAGCACCTTCCT
1 TAAGAGCACCTACCT
81965930 TA
1 TA
81965932 CATCCGAGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.25
Consensus pattern (15 bp):
TAAGAGCACCTACCT
Found at i:81967427 original size:110 final size:110
Alignment explanation
Indices: 81967234--81967453 Score: 386
Period size: 110 Copynumber: 2.0 Consensus size: 110
81967224 AATAAGGGTG
* *
81967234 AAAAAAAAACTTGATTAAAAATAGCTCTGTTCTAGTTGATATCGGTTAACTGATTCACTGACTAA
1 AAAAAAAAACTTGATTAAAAATAGCTCTGTTCTAGTTGACATCGGTTAACTGATTCACTGACCAA
81967299 ACCGTTCTTTAGTAGCATTGGTCTCTCCTTCACTCCCGTCTTCAT
66 ACCGTTCTTTAGTAGCATTGGTCTCTCCTTCACTCCCGTCTTCAT
* *
81967344 AAAAAAAAACTTGATTAAAAATAGCTCTGTTCTGGTTGACATCGGTTAATTGATTCACTGACCAA
1 AAAAAAAAACTTGATTAAAAATAGCTCTGTTCTAGTTGACATCGGTTAACTGATTCACTGACCAA
* *
81967409 ACTGTTCTTTAGTAGCATTGGTCTCTCCTTCACTCTCGTCTTCAT
66 ACCGTTCTTTAGTAGCATTGGTCTCTCCTTCACTCCCGTCTTCAT
81967454 TTAATCTTTC
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
110 104 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (110 bp):
AAAAAAAAACTTGATTAAAAATAGCTCTGTTCTAGTTGACATCGGTTAACTGATTCACTGACCAA
ACCGTTCTTTAGTAGCATTGGTCTCTCCTTCACTCCCGTCTTCAT
Found at i:81967565 original size:21 final size:21
Alignment explanation
Indices: 81967541--81967587 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
81967531 CCAGAATCAT
*
81967541 TAAATCCTAAACTATAAACC-C
1 TAAATCATAAACT-TAAACCTC
*
81967562 TAAATCATAAACTTTAACCTC
1 TAAATCATAAACTTAAACCTC
81967583 TAAAT
1 TAAAT
81967588 TAATTAGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (21 bp):
TAAATCATAAACTTAAACCTC
Found at i:81968824 original size:140 final size:139
Alignment explanation
Indices: 81968565--81969228 Score: 691
Period size: 140 Copynumber: 4.8 Consensus size: 139
81968555 GGTATAACAC
* * *
81968565 AAGTT-GGCATAGTGTTGGACAAAACCGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCCT
1 AAGTTCGGCATAGTGTTGGACAAAGCTGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCCC
* * * *
81968629 GA-TCCTTATACAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGT
66 AACT-CTTATACAAAGAGTTGGCCAAAGCGTATGTCGACAAGTCTATCCCAACACTTAGGAAAGT
81968693 GTTGGCCCAA
130 GTTGGCCCAA
* * * *
81968703 AAGTATCGGCATAGTGTTGGACAAAGCTAACTCTTATTTAAGTGTTGCCTTTGGTATGCATATTC
1 AAGT-TCGGCATAGTGTTGGACAAAGCTGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCC
* * * * * * *
81968768 CAACTCTTATACAAAGAGTTGACCAAAACGTATGCCGACAAGTTTACCCCAGCACTTA-GAAA-A
65 CAACTCTTATACAAAGAGTTGGCCAAAGCGTATGTCGACAAGTCTATCCCAACACTTAGGAAAGT
81968831 G-T-G--C--
130 GTTGGCCCAA
* * * ** *
81968835 -----CGGCATAGTGTTGAACAAAGCCT-AATCTTATATAAGCATTGTCTTAGGCATGCATATCC
1 AAGTTCGGCATAGTGTTGGACAAAG-CTGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCC
* * * ** * *
81968894 CAACTCTTATACAAAGGGTTGGACAAAGTGTACATCAACAAGTTTATCCCAACACTTAGGAAAAG
65 CAACTCTTATACAAAGAGTTGGCCAAAGCGTATGTCGACAAGTCTATCCCAACACTTAGG-AAAG
81968959 T-TTCGGCCCAA
129 TGTT-GGCCCAA
* * * * *
81968970 AAGTTTCGGCATAGTGTTGGATAAAG-TCGGCTCCTATTTAAGCGTTGCCTTAGGCATACATATC
1 AAG-TTCGGCATAGTGTTGGACAAAGCT-GACTCTTATTTAAGTGTTGCCTTAGGCATGCATATC
* * * *
81969034 CCAACTCTTATATAAAG-GATTGGCCAAAGTGTATATTGACAAGTCTATCCCAACACTTAGGAAA
64 CCAACTCTTATACAAAGAG-TTGGCCAAAGCGTATGTCGACAAGTCTATCCCAACACTTAGGAAA
**
81969098 GTGTCAGCCCAA
128 GTGTTGGCCCAA
* * *
81969110 AAGTGTCGGCATAATGTTGGACAAAGCCGACTCTTATTTAAGTGTTGCCTTAGGCATGTATATCC
1 AAGT-TCGGCATAGTGTTGGACAAAGCTGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCC
* *
81969175 CAACTCTTATACAAATAGTTGGCCAAAACGTATGTCGACAAGTCTATCCCAACA
65 CAACTCTTATACAAAGAGTTGGCCAAAGCGTATGTCGACAAGTCTATCCCAACA
81969229 TTTAAAAAAG
Statistics
Matches: 429, Mismatches: 70, Indels: 52
0.78 0.13 0.09
Matches are distributed among these distances:
126 94 0.22
127 3 0.01
128 3 0.01
129 1 0.00
131 1 0.00
133 1 0.00
134 1 0.00
136 1 0.00
137 1 0.00
138 5 0.01
139 7 0.02
140 209 0.49
141 102 0.24
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (139 bp):
AAGTTCGGCATAGTGTTGGACAAAGCTGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCCC
AACTCTTATACAAAGAGTTGGCCAAAGCGTATGTCGACAAGTCTATCCCAACACTTAGGAAAGTG
TTGGCCCAA
Found at i:81968935 original size:126 final size:127
Alignment explanation
Indices: 81968709--81968959 Score: 310
Period size: 126 Copynumber: 2.0 Consensus size: 127
81968699 CCAAAAGTAT
* * ** * * *
81968709 CGGCATAGTGTTGGACAAAGCTAACTCTTATTTAAGTGTTGCCTTTGGTATGCATATTCCAACTC
1 CGGCATAGTGTTGAACAAAGCTAACTCTTATATAAGCATTGCCTTAGGCATGCATATCCCAACTC
** * *
81968774 TTATACAAAGAGTTGACCAAAACGTATGCCGACAAGTTTACCCCAGCACTTA-GAAAAGTGC
66 TTATACAAAGAGTTGACCAAAACGTACACCAACAAGTTTACCCCAACACTTAGGAAAAGTGC
*
81968835 CGGCATAGTGTTGAACAAAGCCTAA-TCTTATATAAGCATTGTCTTAGGCATGCATATCCCAACT
1 CGGCATAGTGTTGAACAAAG-CTAACTCTTATATAAGCATTGCCTTAGGCATGCATATCCCAACT
* ** * *
81968899 CTTATACAAAGGGTTGGA-CAAAGTGTACATCAACAAGTTTATCCCAACACTTAGGAAAAGT
65 CTTATACAAAGAGTT-GACCAAAACGTACACCAACAAGTTTACCCCAACACTTAGGAAAAGT
81968960 TTCGGCCCAA
Statistics
Matches: 105, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
126 92 0.88
127 13 0.12
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (127 bp):
CGGCATAGTGTTGAACAAAGCTAACTCTTATATAAGCATTGCCTTAGGCATGCATATCCCAACTC
TTATACAAAGAGTTGACCAAAACGTACACCAACAAGTTTACCCCAACACTTAGGAAAAGTGC
Found at i:81969077 original size:267 final size:266
Alignment explanation
Indices: 81968570--81969100 Score: 620
Period size: 267 Copynumber: 2.0 Consensus size: 266
81968560 AACACAAGTT
* * * ** **
81968570 GGCATAGTGTTGGACAAAACCGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCCTGATCCT
1 GGCATAGTGTTGAACAAAACCGAATCTTATATAAGCATTGCCTTAGGCATGCATATCCCAATCCT
* ** ***
81968635 TATACAAAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGGCC
66 TATACAAAGAGTTGGACAAAGCATACATCAACAAGTCTATCCCAACACTTAGGAAAGTGTTGGCC
* * * * *
81968700 CAAAAGTATCGGCATAGTGTTGGACAAAGCTAACTCTTATTTAAGTGTTGCCTTTGGTATGCATA
131 CAAAAGTATCGGCATAGTGTTGGACAAAGCTAACTCCTATTTAAGCGTTGCCTTAGGCATACATA
* * * *
81968765 TTCCAACTCTTATACAAAGAGTTGACCAAAACGTATGCCGACAAGTTTACCCCAGCACTTAGAAA
196 TCCCAACTCTTATACAAAGAGTTGACCAAAACGTATACCGACAAGTCTACCCCAACACTTAGAAA
81968830 AGTGCC
261 AGTGCC
* * *
81968836 GGCATAGTGTTGAACAAAGCCTAATCTTATATAAGCATTGTCTTAGGCATGCATATCCCAA-CTC
1 GGCATAGTGTTGAACAAAACCGAATCTTATATAAGCATTGCCTTAGGCATGCATATCCCAATC-C
* ** *
81968900 TTATACAAAGGGTTGGACAAAGTGTACATCAACAAGTTTATCCCAACACTTAGGAAAAGT-TTCG
65 TTATACAAAGAGTTGGACAAAGCATACATCAACAAGTCTATCCCAACACTTAGG-AAAGTGTT-G
* * **
81968964 GCCCAAAAGTTTCGGCATAGTGTTGGATAAAG-TCGGCTCCTATTTAAGCGTTGCCTTAGGCATA
128 GCCCAAAAGTATCGGCATAGTGTTGGACAAAGCT-AACTCCTATTTAAGCGTTGCCTTAGGCATA
* * ** ** *
81969028 CATATCCCAACTCTTATATAAAG-GATTGGCCAAAGTGTATATTGACAAGTCTATCCCAACACTT
192 CATATCCCAACTCTTATACAAAGAG-TTGACCAAAACGTATACCGACAAGTCTACCCCAACACTT
*
81969092 AGGAAAGTG
256 AGAAAAGTG
81969101 TCAGCCCAAA
Statistics
Matches: 219, Mismatches: 41, Indels: 9
0.81 0.15 0.03
Matches are distributed among these distances:
265 1 0.00
266 100 0.46
267 118 0.54
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (266 bp):
GGCATAGTGTTGAACAAAACCGAATCTTATATAAGCATTGCCTTAGGCATGCATATCCCAATCCT
TATACAAAGAGTTGGACAAAGCATACATCAACAAGTCTATCCCAACACTTAGGAAAGTGTTGGCC
CAAAAGTATCGGCATAGTGTTGGACAAAGCTAACTCCTATTTAAGCGTTGCCTTAGGCATACATA
TCCCAACTCTTATACAAAGAGTTGACCAAAACGTATACCGACAAGTCTACCCCAACACTTAGAAA
AGTGCC
Found at i:81970969 original size:19 final size:19
Alignment explanation
Indices: 81970945--81970983 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
81970935 ATATAAAATA
81970945 TTATAAATTTCAATGTTAT
1 TTATAAATTTCAATGTTAT
81970964 TTATAAATTTCAATGTTAT
1 TTATAAATTTCAATGTTAT
81970983 T
1 T
81970984 AAACATACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (19 bp):
TTATAAATTTCAATGTTAT
Found at i:81971678 original size:16 final size:17
Alignment explanation
Indices: 81971650--81971681 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
81971640 ATAAGTTTTA
81971650 ATTAAGCTTTATTTATT
1 ATTAAGCTTTATTTATT
81971667 ATTAAG-TTTATTTAT
1 ATTAAGCTTTATTTAT
81971682 GACATTGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.59
Consensus pattern (17 bp):
ATTAAGCTTTATTTATT
Found at i:81971868 original size:15 final size:15
Alignment explanation
Indices: 81971848--81971877 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
81971838 TTAAACAATG
81971848 AAAAGATAAGAAAAT
1 AAAAGATAAGAAAAT
81971863 AAAAGATAAGAAAAT
1 AAAAGATAAGAAAAT
81971878 CTCAAATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (15 bp):
AAAAGATAAGAAAAT
Found at i:81976430 original size:40 final size:40
Alignment explanation
Indices: 81976272--81976406 Score: 252
Period size: 40 Copynumber: 3.4 Consensus size: 40
81976262 TATGTGCATA
*
81976272 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
81976312 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
81976352 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
81976392 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
81976407 GTTACATCCG
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:81976430 original size:80 final size:80
Alignment explanation
Indices: 81976272--81976430 Score: 237
Period size: 80 Copynumber: 2.0 Consensus size: 80
81976262 TATGTGCATA
*
81976272 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTATTACAACCG
* * *
81976337 GGTTAAGTCCCGAAG
66 AGTCAAATCCCGAAG
* * * *
81976352 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTACATCCG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTATTACAACCG
*
81976417 AGTCAAATTCCGAA
66 AGTCAAATCCCGAA
81976431 AGTATTTATG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
80 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (80 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTATTACAACCG
AGTCAAATCCCGAAG
Found at i:81983094 original size:6 final size:6
Alignment explanation
Indices: 81983076--81983154 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
81983066 AAGAGTCTGT
* * * *
81983076 AGAAAA AGTAAA AGAAAA AGAACA AGAAAA A-AATAA ATAAAA ATAAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAA-AA AGAAAA AGAAAA
*
81983124 ATAAAA AG-AAA AGAAAA TCGAGAAAA AGAAA
1 AGAAAA AGAAAA AGAAAA ---AGAAAA AGAAA
81983155 GGAAAATTGA
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
5 7 0.11
6 47 0.76
7 2 0.03
9 6 0.10
ACGTcount: A:0.77, C:0.03, G:0.13, T:0.08
Consensus pattern (6 bp):
AGAAAA
Found at i:81989084 original size:43 final size:43
Alignment explanation
Indices: 81989037--81989129 Score: 141
Period size: 43 Copynumber: 2.2 Consensus size: 43
81989027 GACACAACCA
* * *
81989037 TGTGTCTCTACTTCGAATGCCCACACGGCCTAAGACACGGGTG
1 TGTGTCTCTACTTCGAATACCCACACAGCCTAAGACACGGGCG
*
81989080 TGTGTCCCTACTTCGAATACCCACACAGCCTAAGACACGGGCG
1 TGTGTCTCTACTTCGAATACCCACACAGCCTAAGACACGGGCG
*
81989123 TATGTCT
1 TGTGTCT
81989130 TAGCCGTGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.24
Consensus pattern (43 bp):
TGTGTCTCTACTTCGAATACCCACACAGCCTAAGACACGGGCG
Found at i:81994475 original size:17 final size:16
Alignment explanation
Indices: 81994453--81994486 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81994443 GGGGATGATG
81994453 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
81994470 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
81994486 T
1 T
81994487 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:82001498 original size:19 final size:22
Alignment explanation
Indices: 82001476--82001521 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
82001466 TATAAAGTTG
82001476 ATAAT-AAT-TAATATATATT-
1 ATAATGAATATAATATATATTA
*
82001495 ATAATGAATATATTATATATTA
1 ATAATGAATATAATATATATTA
82001517 ATAAT
1 ATAAT
82001522 TATCATCCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 5 0.22
20 3 0.13
21 10 0.43
22 5 0.22
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
ATAATGAATATAATATATATTA
Found at i:82001507 original size:14 final size:15
Alignment explanation
Indices: 82001488--82001524 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
82001478 AATAATTAAT
82001488 ATATATTATA-ATGA
1 ATATATTATATATGA
*
82001502 ATATATTATATATTA
1 ATATATTATATATGA
82001517 ATA-ATTAT
1 ATATATTAT
82001525 CATCCTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (15 bp):
ATATATTATATATGA
Found at i:82001631 original size:29 final size:30
Alignment explanation
Indices: 82001574--82001631 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
82001564 CTTTTGAAAA
* * *
82001574 TATTTACAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCAACCAAATTTTAT
82001604 TATTTACAAAAAGA-GCAACCAAATTTTA
1 TATTTACAAAAAGAGGCAACCAAATTTTA
82001632 AAAATACTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACCAAATTTTAT
Found at i:82006634 original size:46 final size:46
Alignment explanation
Indices: 82006584--82006759 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
82006574 TGGTTGAGCA
82006584 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82006630 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82006675 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82006723 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82006760 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82006740 original size:93 final size:93
Alignment explanation
Indices: 82006581--82006752 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
82006571 GGATGGTTGA
* *
82006581 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82006646 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
82006674 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82006739 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
82006753 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82014172 original size:46 final size:46
Alignment explanation
Indices: 82014122--82014297 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
82014112 TGGTTGAGCA
82014122 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82014168 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82014213 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82014261 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82014298 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82014278 original size:93 final size:93
Alignment explanation
Indices: 82014119--82014290 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
82014109 GGATGGTTGA
* *
82014119 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82014184 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
82014212 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82014277 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
82014291 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82016801 original size:40 final size:40
Alignment explanation
Indices: 82016735--82016901 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
82016725 AAATTGAATG
* * *
82016735 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
82016774 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
82016814 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
82016854 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
82016894 ATATCCGG
1 ATATCCGG
82016902 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:82024837 original size:39 final size:40
Alignment explanation
Indices: 82024714--82024879 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
82024704 AAATTGAATG
* * *
82024714 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
82024753 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
82024793 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
82024832 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
82024872 ATATCCGG
1 ATATCCGG
82024880 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:82024846 original size:79 final size:79
Alignment explanation
Indices: 82024714--82024863 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
82024704 AAATTGAATG
*
82024714 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
82024779 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
82024793 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
82024856 ATTTGTGC
64 AATTGTGC
82024864 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:82033569 original size:12 final size:12
Alignment explanation
Indices: 82033548--82033578 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
82033538 AACATATCAC
*
82033548 ATAATTTCTGTA
1 ATAATCTCTGTA
82033560 ATAATCTCTGTA
1 ATAATCTCTGTA
82033572 ATAATCT
1 ATAATCT
82033579 AATCTCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (12 bp):
ATAATCTCTGTA
Found at i:82034094 original size:27 final size:27
Alignment explanation
Indices: 82034048--82034120 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
82034038 ACACGATTTG
* *
82034048 GGCCTAAGCCC-TTTCAGTATCAGTTA
1 GGCCTTAGCCCATTTCAGTATCAATTA
*
82034074 GGCCTTAGCCTATTTCAGTATCAATTA
1 GGCCTTAGCCCATTTCAGTATCAATTA
82034101 GGCCTTAGCCCATTTCAGTA
1 GGCCTTAGCCCATTTCAGTA
82034121 ACCCTAGCAG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 9 0.21
27 33 0.79
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (27 bp):
GGCCTTAGCCCATTTCAGTATCAATTA
Found at i:82034171 original size:34 final size:34
Alignment explanation
Indices: 82034101--82034182 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 34
82034091 GTATCAATTA
* * * * *
82034101 GGCCTTAGCCCATTTCAGTAACCCTAGCAGTTTG
1 GGCCTAAGCCCGTTTCAGTAACACTAACAGTCTG
* * *
82034135 GGCCTGAGCCCGTTTCAGTAACAGTAATAGTCTG
1 GGCCTAAGCCCGTTTCAGTAACACTAACAGTCTG
82034169 GGCCTAAGCCCGTT
1 GGCCTAAGCCCGTT
82034183 AACATATCAG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (34 bp):
GGCCTAAGCCCGTTTCAGTAACACTAACAGTCTG
Found at i:82040055 original size:18 final size:18
Alignment explanation
Indices: 82040032--82040067 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
82040022 GAGATGGTTA
*
82040032 GAATTATTAAATGACTAT
1 GAATTAGTAAATGACTAT
*
82040050 GAATTAGTAATTGACTAT
1 GAATTAGTAAATGACTAT
82040068 CATCCAGGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.14, T:0.39
Consensus pattern (18 bp):
GAATTAGTAAATGACTAT
Found at i:82072167 original size:66 final size:68
Alignment explanation
Indices: 82072077--82072206 Score: 167
Period size: 66 Copynumber: 1.9 Consensus size: 68
82072067 ACATGGTGAA
* * *
82072077 CACTTAGTACCACTCATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGT
1 CACTTAGAACCACGCATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGT
82072139 CTTT
65 CTTT
*
82072143 CACTTAGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CACTTAGAACCACGCATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
82072207 ATACATCCCG
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
66 24 0.44
67 6 0.11
68 1 0.02
69 1 0.02
71 22 0.41
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
CACTTAGAACCACGCATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTC
TTT
Found at i:82076464 original size:28 final size:28
Alignment explanation
Indices: 82076411--82076494 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 28
82076401 CACTTTGTGC
*
82076411 TATTCTGGTATGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
82076440 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
** *
82076468 GGTACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
82076495 CTGGTGTGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 32 0.65
29 17 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:82076506 original size:23 final size:23
Alignment explanation
Indices: 82076438--82076508 Score: 79
Period size: 28 Copynumber: 2.9 Consensus size: 23
82076428 GATGGATTAT
* *
82076438 ATTATTCTGGTGTGTTTGGGAGG
1 ATTATACTGGTGTGTTTTGGAGG
82076461 ATTATATGGTACTGGTGTGTTTTGGAGG
1 A-T-TA---TACTGGTGTGTTTTGGAGG
82076489 ATTATACTGGTGTGTTTTGG
1 ATTATACTGGTGTGTTTTGG
82076509 TTGGACATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
23 17 0.41
24 1 0.02
25 2 0.05
26 2 0.05
27 1 0.02
28 18 0.44
ACGTcount: A:0.15, C:0.04, G:0.35, T:0.45
Consensus pattern (23 bp):
ATTATACTGGTGTGTTTTGGAGG
Found at i:82076522 original size:23 final size:23
Alignment explanation
Indices: 82076470--82076528 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
82076460 GATTATATGG
*
82076470 TACTGGTGTGTTTTGGAGGATTA
1 TACTGGTGTGTTTTGGAGGATCA
*
82076493 TACTGGTGTGTTTTGGTTGGA-CA
1 TACTGGTGTGTTTTGG-AGGATCA
*
82076516 TATTGGTGTGTTT
1 TACTGGTGTGTTT
82076529 GGATGGAATC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
23 29 0.91
24 3 0.09
ACGTcount: A:0.14, C:0.05, G:0.34, T:0.47
Consensus pattern (23 bp):
TACTGGTGTGTTTTGGAGGATCA
Found at i:82076736 original size:22 final size:23
Alignment explanation
Indices: 82076701--82076743 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
82076691 TTTACTGATA
82076701 AGGCACTTTATGTGTCGTATTTC
1 AGGCACTTTATGTGTCGTATTTC
82076724 AGGCAC-TTATGTGTCGTATT
1 AGGCACTTTATGTGTCGTATT
82076744 CTGATCAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.42
Consensus pattern (23 bp):
AGGCACTTTATGTGTCGTATTTC
Found at i:82077955 original size:46 final size:46
Alignment explanation
Indices: 82077819--82077945 Score: 218
Period size: 46 Copynumber: 2.8 Consensus size: 46
82077809 TATATATACA
* * *
82077819 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
82077865 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
82077911 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
82077946 CGCCACATAT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:82078000 original size:47 final size:47
Alignment explanation
Indices: 82077969--82078256 Score: 495
Period size: 47 Copynumber: 6.1 Consensus size: 47
82077959 CACTTCCACG
**
82077969 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
82078016 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
82078063 TTCATCACATTGGCCATTCGGCCTTATCACACATATGTAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
82078110 TTCATCACATTGGCCATTCGGTCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
82078157 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
82078204 TTCATCACATTGGCCATTCGGCCTTATCACATATATGTATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
82078251 TTCATC
1 TTCATC
82078257 TCATAAAATC
Statistics
Matches: 228, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 228 1.00
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:82078047 original size:22 final size:22
Alignment explanation
Indices: 82078019--82078093 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
82078009 GTTCACATTC
82078019 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
82078041 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
82078065 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82078088 ATCACA
1 ATCACA
82078094 CATATGTAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.40
23 7 0.17
24 7 0.17
25 10 0.25
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82078186 original size:22 final size:22
Alignment explanation
Indices: 82078160--82078235 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
82078150 GTTCACATTC
82078160 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
82078182 ATCACGTATAT-G-CATGTTC-ACATT
1 ATCAC--AT-TGGCCA--TTCGGCCTT
82078206 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82078229 ATCACAT
1 ATCACAT
82078236 ATATGTATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82080194 original size:2 final size:2
Alignment explanation
Indices: 82080187--82080221 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
82080177 ACATTCGGCA
82080187 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82080222 AATGACTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:82082130 original size:27 final size:27
Alignment explanation
Indices: 82082062--82082263 Score: 198
Period size: 27 Copynumber: 7.6 Consensus size: 27
82082052 TTAGTTTACC
* * *
82082062 AAATTACAGAAATACCCCCAG-TTATA
1 AAATTACTGAAATACCCTCAGTTTGTA
* * * *
82082088 AAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACTGAAA-TACCCTCAGTTTGTA
* *
82082115 AAATTACTGAAATACCGTC-GATTGTA
1 AAATTACTGAAATACCCTCAGTTTGTA
* * *
82082141 AAATTACTGAAATACCATCAATTTGAA
1 AAATTACTGAAATACCCTCAGTTTGTA
* *
82082168 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACTGAAATACCCTCAGTTTGTA
82082195 AAATTACTGAAATACCCTC-GATTTGTA
1 AAATTACTGAAATACCCTCAG-TTTGTA
* *
82082222 AAATTACTAAAATACCCT-TGATTTGTA
1 AAATTACTGAAATACCCTCAG-TTTGTA
82082249 AAATTACTGAAATAC
1 AAATTACTGAAATAC
82082264 TCCTGTAAGA
Statistics
Matches: 151, Mismatches: 19, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
25 3 0.02
26 39 0.26
27 106 0.70
28 3 0.02
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAGTTTGTA
Found at i:82082255 original size:81 final size:80
Alignment explanation
Indices: 82082086--82082263 Score: 232
Period size: 81 Copynumber: 2.2 Consensus size: 80
82082076 CCCCCAGTTA
* * * *
82082086 TAAAATTACC-AAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTCGATTGTAAAATTACTG
1 TAAAATTACCGAAA-TACCCCCAGTTTACAAAATTACTGAAATACCCTCGATTGTAAAATTACTA
82082150 AAATACCATCAATTTG
65 AAATACCATCAATTTG
* * *
82082166 AAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATTTGTAAAATTACTA
1 TAAAATTACCGAAATACCCCCAGTTTACAAAATTACTGAAATACCCTCGA-TTGTAAAATTACTA
* **
82082231 AAATACCCTTGATTTG
65 AAATACCATCAATTTG
*
82082247 TAAAATTACTGAAATAC
1 TAAAATTACCGAAATAC
82082264 TCCTGTAAGA
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 40 0.48
81 44 0.52
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (80 bp):
TAAAATTACCGAAATACCCCCAGTTTACAAAATTACTGAAATACCCTCGATTGTAAAATTACTAA
AATACCATCAATTTG
Found at i:82082305 original size:27 final size:27
Alignment explanation
Indices: 82082275--82082498 Score: 340
Period size: 27 Copynumber: 8.3 Consensus size: 27
82082265 CCTGTAAGAT
82082275 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
82082302 AGAATTATCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
82082329 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*** * *
82082356 AGAATTATTGTTTTACCCTCAATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
**
82082383 AGAATTACCATTTTACCCTTAATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
82082410 AGAATTACCGTCTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
82082437 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
82082464 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
82082491 AAAATTAC
1 AGAATTAC
82082499 TGAAATACCT
Statistics
Matches: 176, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 176 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:82082507 original size:27 final size:27
Alignment explanation
Indices: 82082087--82082589 Score: 181
Period size: 27 Copynumber: 18.7 Consensus size: 27
82082077 CCCCAGTTAT
* * *
82082087 AAAATTACCA-AAGTACCCCCGGTTTAT
1 AAAATTACCATAA-TACCCTCGATTTAC
* *
82082114 AAAATTACTGA-AATACCGTCGATTGT--
1 AAAATTAC-CATAATACCCTCGATT-TAC
* * *
82082140 AAAATTACTGA-AATACCATCAATTTGA-
1 AAAATTAC-CATAATACCCTCGATTT-AC
*
82082167 AAAATTACCGA-AATACCCTC-AGTTTGC
1 AAAATTACC-ATAATACCCTCGA-TTTAC
* **
82082194 AAAATTACTGA-AATACCCTCGATTTGT
1 AAAATTAC-CATAATACCCTCGATTTAC
* * * **
82082221 AAAATTACTAAAATACCCTTGATTTGT
1 AAAATTACCATAATACCCTCGATTTAC
* * *
82082248 AAAATTACTGA-AATACTCCT-G--TAAG
1 AAAATTAC-CATAATAC-CCTCGATTTAC
**
82082273 ATAGAATTACCATTTTACCCTCGATTTAC
1 A-A-AATTACCATAATACCCTCGATTTAC
* * ** *
82082302 AGAATTATCATTTTACCCTCGATTTAT
1 AAAATTACCATAATACCCTCGATTTAC
* **
82082329 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCATAATACCCTCGATTTAC
* *** ** * *
82082356 AGAATTATTGTTTTACCCTCAATTTAT
1 AAAATTACCATAATACCCTCGATTTAC
* ** **
82082383 AGAATTACCATTTTACCCTTAATTTAC
1 AAAATTACCATAATACCCTCGATTTAC
* * **
82082410 AGAATTACCGTCTTACCCTCGATTTAC
1 AAAATTACCATAATACCCTCGATTTAC
* **
82082437 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCATAATACCCTCGATTTAC
* **
82082464 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCATAATACCCTCGATTTAC
* * * *
82082491 AAAATTACTGA-AATACCTTTGGTTTAC
1 AAAATTAC-CATAATACCCTCGATTTAC
* ** *
82082518 AAAATTACCAAAATACCCTCGATCAAT
1 AAAATTACCATAATACCCTCGATTTAC
* * **
82082545 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTACCATAATACCCTC-GATTTAC
*
82082572 AAAATTACCAAAATACCC
1 AAAATTACCATAATACCC
82082590 CTGATTTGTG
Statistics
Matches: 394, Mismatches: 61, Indels: 42
0.79 0.12 0.08
Matches are distributed among these distances:
25 3 0.01
26 31 0.08
27 347 0.88
28 10 0.03
29 3 0.01
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (27 bp):
AAAATTACCATAATACCCTCGATTTAC
Found at i:82082517 original size:54 final size:54
Alignment explanation
Indices: 82082277--82082562 Score: 232
Period size: 54 Copynumber: 5.3 Consensus size: 54
82082267 TGTAAGATAG
** * * * *
82082277 AATTACCATTTTACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTATAG
1 AATTACCATAATACCCTCGATTTACAGAATTACCATCTTACCCTCGATTTACAA
** *** * * * *
82082331 AATTACCATTTTACCCTCGATTTACAGAATTATTGTTTTACCCTCAATTTATAG
1 AATTACCATAATACCCTCGATTTACAGAATTACCATCTTACCCTCGATTTACAA
** ** * *
82082385 AATTACCATTTTACCCTTAATTTACAGAATTACCGTCTTACCCTCGATTTACAG
1 AATTACCATAATACCCTCGATTTACAGAATTACCATCTTACCCTCGATTTACAA
** *
82082439 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAA
1 AATTACCATAATACCCTCGATTTACAGAATTACCATCTTACCCTCGATTTACAA
* * * * * *** ** *
82082493 AATTACTGA-AATACCTTTGGTTTACAAAATTACCAAAATACCCTCGATCAATAA
1 AATTAC-CATAATACCCTCGATTTACAGAATTACCATCTTACCCTCGATTTACAA
*
82082547 AATTACCAAAATACCC
1 AATTACCATAATACCC
82082563 CTGGTTTGTA
Statistics
Matches: 200, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
53 1 0.00
54 198 0.99
55 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (54 bp):
AATTACCATAATACCCTCGATTTACAGAATTACCATCTTACCCTCGATTTACAA
Found at i:82082540 original size:81 final size:80
Alignment explanation
Indices: 82082275--82082527 Score: 308
Period size: 81 Copynumber: 3.1 Consensus size: 80
82082265 CCTGTAAGAT
* * *
82082275 AGAATTACCATTTTACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTATAGAATTACCAT
1 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACGA-
*
82082340 TTTACCCTCGATTTAC
65 ATTACCCTCGATTTAC
*** * * ** *
82082356 AGAATTATTGTTTTACCCTCAATTTATAGAATTACCATTTTACCCTTAATTTACAGAATTACCGT
1 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTA-CGA
*
82082421 CTTACCCTCGATTTAC
65 ATTACCCTCGATTTAC
*
82082437 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTGA
1 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTAC-GA
* * * *
82082502 AATACCTTTGGTTTAC
65 ATTACCCTCGATTTAC
*
82082518 AAAATTACCA
1 AGAATTACCA
82082528 AAATACCCTC
Statistics
Matches: 143, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
80 1 0.01
81 141 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.38
Consensus pattern (80 bp):
AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACGAA
TTACCCTCGATTTAC
Found at i:82082590 original size:27 final size:27
Alignment explanation
Indices: 82082479--82082616 Score: 116
Period size: 27 Copynumber: 5.1 Consensus size: 27
82082469 TACCATTTTA
* **
82082479 CCCTCGATTTACAAAATTACTGAAATAC
1 CCCT-GATTTATAAAATTACCAAAATAC
** * *
82082507 CTTTGGTTTACAAAATTACCAAAATA-
1 CCCTGATTTATAAAATTACCAAAATAC
**
82082533 CCCTCGATCAATAAAATTACCAAAATAC
1 CCCT-GATTTATAAAATTACCAAAATAC
* *
82082561 CCCTGGTTTGTAAAATTACCAAAATAC
1 CCCTGATTTATAAAATTACCAAAATAC
* * * *
82082588 CCCTGATTTGTGAAATTATCGAAATAC
1 CCCTGATTTATAAAATTACCAAAATAC
82082615 CC
1 CC
82082617 TTGTAGGGTA
Statistics
Matches: 89, Mismatches: 19, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.02
27 81 0.91
28 6 0.07
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (27 bp):
CCCTGATTTATAAAATTACCAAAATAC
Found at i:82082631 original size:27 final size:27
Alignment explanation
Indices: 82082601--82082985 Score: 529
Period size: 27 Copynumber: 14.3 Consensus size: 27
82082591 TGATTTGTGA
* *
82082601 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
82082628 AATTACTGAAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82082655 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82082682 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82082709 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82082736 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82082763 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82082790 AATTACCGGAATATCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82082817 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82082844 AATTACTGAAATACCCCCGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82082871 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
82082898 AATTACCTG-AATACCCCTGTAGGGTAG
1 AATTACC-GAAATACCCCTGTAGGGTAG
* *
82082925 AATTACCGAAATACCTCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
82082952 AATTACCTAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
82082979 AATTACC
1 AATTACC
82082986 ATTTTACCCC
Statistics
Matches: 322, Mismatches: 34, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
26 1 0.00
27 320 0.99
28 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:82083366 original size:22 final size:22
Alignment explanation
Indices: 82083333--82083391 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
82083323 CACGTTATCG
82083333 ATGG-TTCTGTGCCAACCTAAAT
1 ATGGCTTC-GTGCCAACCTAAAT
* * * *
82083355 ATGGCTTCGTGCCATCTTGACT
1 ATGGCTTCGTGCCAACCTAAAT
82083377 ATGGCTTCGTGCCAA
1 ATGGCTTCGTGCCAA
82083392 ATGTATTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 28 0.90
23 3 0.10
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTCGTGCCAACCTAAAT
Found at i:82083553 original size:27 final size:26
Alignment explanation
Indices: 82083516--82083568 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
82083506 GTTATTACAG
*
82083516 TTATCGATTCTAGTGGCTTTGCCACA
1 TTATCGATTCTAGTGGCTATGCCACA
*
82083542 TTATCTGATTCTGGTGGCTATGCCACA
1 TTATC-GATTCTAGTGGCTATGCCACA
82083569 AATATCTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
TTATCGATTCTAGTGGCTATGCCACA
Found at i:82090329 original size:6 final size:6
Alignment explanation
Indices: 82090320--82090444 Score: 69
Period size: 6 Copynumber: 20.3 Consensus size: 6
82090310 TTGCATTCAC
* *
82090320 ATTCTG ATTCTA ATTCTG -TTACCTG ATTCTG ATTCTG -TTACCTG ATACTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATT--CTG ATTCTG
* * * * * *
82090370 ATTCTG ATTCTG ATTTTG ATTTTG -TCACCTA ATTTTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* *
82090419 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
82090445 AATTTTTCTT
Statistics
Matches: 90, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
5 6 0.07
6 72 0.80
7 8 0.09
8 4 0.04
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:82090347 original size:19 final size:19
Alignment explanation
Indices: 82090323--82090412 Score: 94
Period size: 19 Copynumber: 4.8 Consensus size: 19
82090313 CATTCACATT
*
82090323 CTGATTCTAATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
82090342 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
82090361 CTGATACTGATTCTGATT--
1 CTGATTCTGATTCTG-TTAC
* * *
82090379 CTGATTTTGATTTTGTCAC
1 CTGATTCTGATTCTGTTAC
* *
82090398 CTAATTTTGATTCTG
1 CTGATTCTGATTCTG
82090413 ATTTTGATTC
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
17 1 0.02
18 12 0.20
19 45 0.75
20 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:82090348 original size:25 final size:24
Alignment explanation
Indices: 82090320--82090380 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
82090310 TTGCATTCAC
*
82090320 ATTCTGATTCTAATT-CTGTTACCTG
1 ATTCTGATTCT-ATTACTGATA-CTG
*
82090345 ATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTATTA-CTGATACTG
82090370 ATTCTGATTCT
1 ATTCTGATTCT
82090381 GATTTTGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 2 0.06
25 25 0.78
26 5 0.16
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.48
Consensus pattern (24 bp):
ATTCTGATTCTATTACTGATACTG
Found at i:82090390 original size:37 final size:37
Alignment explanation
Indices: 82090342--82090423 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
82090332 ATTCTGTTAC
* *
82090342 CTGATTCTGATTCTGTTACCTGATACTGATTCTGATT
1 CTGATTCTGATTCTGTCACCTAATACTGATTCTGATT
* * **
82090379 CTGATTTTGATTTTGTCACCTAATTTTGATTCTGATT
1 CTGATTCTGATTCTGTCACCTAATACTGATTCTGATT
*
82090416 TTGATTCT
1 CTGATTCT
82090424 CATTTTGATT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.51
Consensus pattern (37 bp):
CTGATTCTGATTCTGTCACCTAATACTGATTCTGATT
Found at i:82092446 original size:16 final size:16
Alignment explanation
Indices: 82092425--82092455 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
82092415 CATTAGTTAC
82092425 AAATCACAAATTCATA
1 AAATCACAAATTCATA
82092441 AAATCACAAATTCAT
1 AAATCACAAATTCAT
82092456 GCAATTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.55, C:0.19, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATCACAAATTCATA
Found at i:82092611 original size:21 final size:20
Alignment explanation
Indices: 82092583--82092621 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
82092573 CAAAACTTGT
82092583 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
82092603 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
82092622 CAAAATACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:82096495 original size:20 final size:21
Alignment explanation
Indices: 82096458--82096500 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
82096448 CAAAACAGGG
*
82096458 TTACAAAGCATTACCAAA-AT
1 TTACAAAACATTACCAAACAT
82096478 TTACAAAACAATTA-CAAACAT
1 TTACAAAAC-ATTACCAAACAT
82096499 TT
1 TT
82096501 CATGTCATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.51, C:0.19, G:0.02, T:0.28
Consensus pattern (21 bp):
TTACAAAACATTACCAAACAT
Found at i:82099095 original size:46 final size:46
Alignment explanation
Indices: 82099043--82099214 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
82099033 AACCCGCCCC
* *
82099043 TAAGTGAACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* * * * *
82099089 TAAGTGAACTCAGACTCAACTAAACGAGTTTGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
82099137 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
82099182 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
82099215 ATGCTCAACC
Statistics
Matches: 97, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 55 0.57
47 24 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:82099160 original size:93 final size:93
Alignment explanation
Indices: 82099048--82099218 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
82099038 GCCCCTAAGT
* * *
82099048 GAACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTAAA
1 GAACTCGGACTCAAATCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTAAA
*
82099113 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
82099141 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTAAA
82099206 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82099219 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTAAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:82099672 original size:30 final size:30
Alignment explanation
Indices: 82099638--82099697 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
82099628 ATTTAATACG
82099638 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
82099668 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
82099698 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Done.