Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 272 of 770
Found at i:82106717 original size:93 final size:93
Alignment explanation
Indices: 82106610--82106780 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
82106600 GCCCCTAAGT
* *
82106610 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
82106675 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
82106703 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
82106768 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82106781 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:82106777 original size:46 final size:46
Alignment explanation
Indices: 82106605--82106777 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
82106595 AACCCGCCCC
* * *
82106605 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * * *
82106651 TAAGTGAACTCAGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
82106699 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
82106744 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82106778 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.57
47 27 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:82107235 original size:30 final size:30
Alignment explanation
Indices: 82107201--82107260 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
82107191 ATTTAATACG
82107201 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
82107231 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
82107261 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:82108297 original size:24 final size:24
Alignment explanation
Indices: 82108270--82108315 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
82108260 AAGAGCCGTA
82108270 ATTGGGAAGTTCACAAAAAACCTT
1 ATTGGGAAGTTCACAAAAAACCTT
*
82108294 ATTGGGAAGTTCACAAAGAACC
1 ATTGGGAAGTTCACAAAAAACC
82108316 ATATCGGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (24 bp):
ATTGGGAAGTTCACAAAAAACCTT
Found at i:82111937 original size:25 final size:25
Alignment explanation
Indices: 82111908--82111955 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82111898 TTATAATATG
* * *
82111908 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
82111933 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
82111956 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:82112022 original size:20 final size:19
Alignment explanation
Indices: 82111999--82112060 Score: 90
Period size: 20 Copynumber: 3.2 Consensus size: 19
82111989 TAAACATGGT
82111999 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
*
82112018 CATGTATGATGTGCACATG-
1 -ATGTATGATATGCACATGA
82112037 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
82112056 GATGT
1 -ATGT
82112061 TCATAAATGC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.45
20 21 0.55
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATGTATGATATGCACATGA
Found at i:82112042 original size:18 final size:18
Alignment explanation
Indices: 82111999--82112055 Score: 87
Period size: 18 Copynumber: 3.1 Consensus size: 18
82111989 TAAACATGGT
82111999 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
*
82112017 ACATGTATGATGTGCACATG
1 --ATGTATGATATGCACATG
82112037 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
82112055 A
1 A
82112056 GATGTTCATA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 18 0.51
20 17 0.49
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (18 bp):
ATGTATGATATGCACATG
Found at i:82112162 original size:24 final size:24
Alignment explanation
Indices: 82112105--82112252 Score: 219
Period size: 24 Copynumber: 6.2 Consensus size: 24
82112095 GGAGGAAGTG
82112105 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
82112129 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
82112152 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
82112176 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
82112200 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
82112223 TAAAAGGGCTTTTGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
82112247 TAAAAG
1 CAAAAG
82112253 AGTCTAGGCC
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
23 44 0.39
24 70 0.61
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:82112174 original size:47 final size:47
Alignment explanation
Indices: 82112105--82112252 Score: 217
Period size: 47 Copynumber: 3.1 Consensus size: 47
82112095 GGAGGAAGTG
82112105 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
82112152 CAAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
* * *
82112200 -TAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTAT
*
82112247 TAAAAG
1 CAAAAG
82112253 AGTCTAGGCC
Statistics
Matches: 90, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
47 64 0.71
48 26 0.29
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:82112221 original size:71 final size:71
Alignment explanation
Indices: 82112105--82112252 Score: 269
Period size: 71 Copynumber: 2.1 Consensus size: 71
82112095 GGAGGAAGTG
82112105 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCT
82112170 AGTTAT
66 AGTTAT
* *
82112176 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCT
82112241 AGTTAT
66 AGTTAT
*
82112247 TAAAAG
1 CAAAAG
82112253 AGTCTAGGCC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCT
AGTTAT
Found at i:82112497 original size:31 final size:31
Alignment explanation
Indices: 82112462--82112525 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
82112452 CGTTTACAGT
82112462 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
82112493 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
82112524 AA
1 AA
82112526 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:82118889 original size:18 final size:17
Alignment explanation
Indices: 82118866--82118899 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
82118856 TAGCTGTGCC
82118866 GTTTTCTCTTCTGTATTA
1 GTTTTCTCTTCT-TATTA
82118884 GTTTTCTCTTCTTATT
1 GTTTTCTCTTCTTATT
82118900 TTTTTCCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (17 bp):
GTTTTCTCTTCTTATTA
Found at i:82120068 original size:25 final size:25
Alignment explanation
Indices: 82120021--82120068 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82120011 TTATAATATG
* * *
82120021 AAAATGACCATTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
82120046 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
82120069 GTGTGACATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:82121702 original size:30 final size:28
Alignment explanation
Indices: 82121666--82121795 Score: 134
Period size: 28 Copynumber: 4.5 Consensus size: 28
82121656 GACAAGATTG
* *
82121666 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGGGTTT--AATTCTATA
* *
82121696 GCACTAAGTGTGCGTGTTTGATTCTATA
1 GCACTAAGTGTGCGGGTTTAATTCTATA
* *
82121724 GCACTAAGTGTGCGTGTTTGATTCTATA
1 GCACTAAGTGTGCGGGTTTAATTCTATA
* ** * *
82121752 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCG-GGTTTAATTCTATA
82121781 GCACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
82121796 ATTCACTATA
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
28 49 0.56
29 21 0.24
30 18 0.20
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGGGTTTAATTCTATA
Found at i:82121735 original size:28 final size:28
Alignment explanation
Indices: 82121666--82121765 Score: 146
Period size: 28 Copynumber: 3.5 Consensus size: 28
82121656 GACAAGATTG
* * * *
82121666 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGTGTTT--GATTCTATA
82121696 GCACTAAGTGTGCGTGTTTGATTCTATA
1 GCACTAAGTGTGCGTGTTTGATTCTATA
82121724 GCACTAAGTGTGCGTGTTTGATTCTATA
1 GCACTAAGTGTGCGTGTTTGATTCTATA
82121752 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82121766 AGCTGAAAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
28 48 0.73
30 18 0.27
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGTGTTTGATTCTATA
Found at i:82123254 original size:20 final size:20
Alignment explanation
Indices: 82123231--82123294 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
82123221 TAAACATGGT
82123231 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
82123251 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
82123271 ATGTATGATATGCACATGAG
1 ATGTATGATATGCACATGAC
82123291 ATGT
1 ATGT
82123295 TCATAAATGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:82123271 original size:11 final size:11
Alignment explanation
Indices: 82123235--82123289 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
82123225 CATGGTATGT
82123235 ATGATATGCAC
1 ATGATATGCAC
* *
82123246 ATGACATG--T
1 ATGATATGCAC
82123255 ATGATATGCAC
1 ATGATATGCAC
*
82123266 ATGATATG--T
1 ATGATATGCAC
82123275 ATGATATGCAC
1 ATGATATGCAC
82123286 ATGA
1 ATGA
82123290 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:82123396 original size:24 final size:24
Alignment explanation
Indices: 82123339--82123491 Score: 202
Period size: 24 Copynumber: 6.4 Consensus size: 24
82123329 GGAGGAAGTG
82123339 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
82123363 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
82123386 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
82123410 CAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
82123434 -TAAAGGGTTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
82123457 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
82123481 TAAAAGAGGCT
1 CAAAAG-GGCT
82123492 AGGCCTCCAG
Statistics
Matches: 113, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
23 41 0.36
24 68 0.60
25 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:82123408 original size:47 final size:47
Alignment explanation
Indices: 82123339--82123491 Score: 218
Period size: 47 Copynumber: 3.2 Consensus size: 47
82123329 GGAGGAAGTG
* *
82123339 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTTTGCCCCAGTTAT
*
82123386 CAAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCTAGTTAT-TAAAGGGCTTTTGCCCCAGTTAT
* *
82123434 -TAAAGGGTTTATGCCCTAGTTATTAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCTAGTTATT-AAAGGGCTTTTGCCCCAGTTAT
*
82123481 TAAAAGAGGCT
1 CAAAAG-GGCT
82123492 AGGCCTCCAG
Statistics
Matches: 94, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
47 66 0.70
48 25 0.27
49 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTTTGCCCCAGTTAT
Found at i:82123455 original size:71 final size:71
Alignment explanation
Indices: 82123339--82123491 Score: 234
Period size: 71 Copynumber: 2.1 Consensus size: 71
82123329 GGAGGAAGTG
*
82123339 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
82123404 AGTTAT
66 AGTTAT
* * * * *
82123410 CAAAAGGGCTTTTGCCCCAGTTATTAAAGGGTTTATGCCCTAGTTATTAAAAGGGCTTTTGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
82123475 AGTTAT
66 AGTTAT
*
82123481 TAAAAGAGGCT
1 CAAAAG-GGCT
82123492 AGGCCTCCAG
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
71 70 0.95
72 4 0.05
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:82123733 original size:31 final size:31
Alignment explanation
Indices: 82123698--82123761 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
82123688 CGTTTACAGT
82123698 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
82123729 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
82123760 AA
1 AA
82123762 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:82131584 original size:45 final size:45
Alignment explanation
Indices: 82131481--82131745 Score: 394
Period size: 45 Copynumber: 6.0 Consensus size: 45
82131471 CCGAATTCAT
* * * *
82131481 TCACCAGCATT-TTGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
82131523 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCAGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
82131568 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
82131613 TCACCGGTATTATAGCATGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
82131658 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
82131703 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCAAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
82131746 CTGTACGATA
Statistics
Matches: 206, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
42 10 0.05
43 17 0.08
44 4 0.02
45 174 0.84
46 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:82132969 original size:19 final size:20
Alignment explanation
Indices: 82132945--82132982 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
82132935 GGTACCACCA
82132945 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
82132964 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
82132983 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:82133322 original size:93 final size:93
Alignment explanation
Indices: 82133212--82133382 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
82133202 GCCCCTAAGT
* *
82133212 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
82133277 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
82133305 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
82133370 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82133383 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82133379 original size:46 final size:46
Alignment explanation
Indices: 82133207--82133379 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
82133197 AACCCGCCCC
* * * *
82133207 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
82133253 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
82133301 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
82133346 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82133380 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:82140225 original size:25 final size:25
Alignment explanation
Indices: 82140211--82140516 Score: 522
Period size: 25 Copynumber: 12.2 Consensus size: 25
82140201 ATAATAAGGG
*
82140211 CAAATTTAACTGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
*
82140236 CAAATTTAACCAGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
82140261 CAAATTTAACCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
* *
82140286 CAAATTTAACCAGAATTATTAAGAG
1 CAAATTTAACCGGAATTATTAAGAA
82140311 CAAATTTAACCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
* *
82140336 CAAATTTAACCGGAATTATTCAGAG
1 CAAATTTAACCGGAATTATTAAGAA
*
82140361 CAAATTTAACCGGAATTATTAAGAG
1 CAAATTTAACCGGAATTATTAAGAA
82140386 CAAATTTAACCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
82140411 CAAATTTAACCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
*
82140436 CAAATGTAACCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
*
82140461 CAAATTTAACCGGAATTATTAAGAG
1 CAAATTTAACCGGAATTATTAAGAA
*
82140486 CAAATTTAATCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
82140511 CAAATT
1 CAAATT
82140517 AACAAGCTTA
Statistics
Matches: 265, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 265 1.00
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.28
Consensus pattern (25 bp):
CAAATTTAACCGGAATTATTAAGAA
Found at i:82145778 original size:68 final size:69
Alignment explanation
Indices: 82145706--82145903 Score: 274
Period size: 71 Copynumber: 2.8 Consensus size: 69
82145696 ACACCCTGTA
* * * * *
82145706 GTAGCTAGGTCACATGTGTGATACGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAGA
1 GTAGCTAGGTCGCATGCGTGATACAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
82145769 TAAAT
65 TAAAT
*
82145774 GTAGCTAGGTCGCATGCGTGACTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGA-TACAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
82145839 ATAAAT
64 ATAAAT
*
82145845 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGA-TACAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
82145904 AGACAAATCG
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 4 0.03
70 1 0.01
71 92 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (69 bp):
GTAGCTAGGTCGCATGCGTGATACAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGAT
AAAT
Found at i:82145823 original size:71 final size:71
Alignment explanation
Indices: 82145740--82145903 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
82145730 GAGATGTATC
82145740 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGACTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGACTCCAAGTGA
82145805 AGGACA
66 AGGACA
*
82145811 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGACTCCAAGTGA
82145876 AGGACA
66 AGGACA
82145882 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
82145904 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.18
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGACTCCAAGTGA
AGGACA
Found at i:82147435 original size:40 final size:40
Alignment explanation
Indices: 82147390--82147556 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
82147380 CGGAATATAA
82147390 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
82147430 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
82147470 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
82147510 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
82147549 CCGGATAT
1 CCGGATAT
82147557 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:82147540 original size:80 final size:79
Alignment explanation
Indices: 82147406--82147556 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
82147396 ATAATCACGT
*
82147406 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
82147471 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
82147486 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
82147549 CCGGATAT
64 CCGGATAT
82147557 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:82158663 original size:40 final size:40
Alignment explanation
Indices: 82158618--82158785 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
82158608 CGGAATATAA
82158618 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
82158658 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
82158698 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
82158738 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
82158778 CCGGATAT
1 CCGGATAT
82158786 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:82164556 original size:71 final size:71
Alignment explanation
Indices: 82164470--82164633 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
82164460 CGATTTGTCT
82164470 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82164535 CTTTCA
66 CTTTCA
82164541 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82164606 CTTTCA
66 CTTTCA
82164612 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
82164634 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:82164671 original size:71 final size:70
Alignment explanation
Indices: 82164470--82164667 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
82164460 CGATTTGTCT
* * * *
82164470 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
82164535 CTTTCA
65 CTTTCA
* * * *
82164541 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
82164606 CTTTCA
65 CTTTCA
* *
82164612 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
82164668 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:82170983 original size:45 final size:46
Alignment explanation
Indices: 82170866--82170992 Score: 154
Period size: 45 Copynumber: 2.8 Consensus size: 46
82170856 TAACCCGCCC
*
82170866 CTAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * *
82170914 CTCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTGCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
82170956 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -C-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82170993 TGCTCAACCA
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
42 5 0.07
43 2 0.03
44 3 0.04
45 29 0.41
47 28 0.40
48 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:82171448 original size:30 final size:30
Alignment explanation
Indices: 82171414--82171473 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
82171404 ATTTAATACG
82171414 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
82171444 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
82171474 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:82187827 original size:5 final size:5
Alignment explanation
Indices: 82187817--82187841 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
82187807 TTCTTCATTC
82187817 CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT
82187842 GATTCTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:82192137 original size:46 final size:46
Alignment explanation
Indices: 82192087--82192262 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
82192077 TGGTTGAGCA
82192087 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
82192133 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
82192178 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
82192226 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82192263 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 61 0.56
47 29 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:82192243 original size:93 final size:93
Alignment explanation
Indices: 82192084--82192255 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
82192074 GGATGGTTGA
* *
82192084 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
82192149 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
82192177 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
82192242 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
82192256 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82196972 original size:40 final size:40
Alignment explanation
Indices: 82196912--82197098 Score: 279
Period size: 40 Copynumber: 4.7 Consensus size: 40
82196902 ATGATTATTC
*
82196912 GACTGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT
1 GACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
82196953 GACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
1 GACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
* *
82196993 GACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGT
1 GACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
* *
82197033 GACTATATCCGGGCTAAGACCCGAAGGTATTTGTGCGAGTT
1 GACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-T
* *
82197074 G-CTATATCC-GGCTAAATCTCGAAGG
1 GACTATATCCGGGCTAAGTCCCGAAGG
82197099 TACTTGGGTT
Statistics
Matches: 135, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
39 13 0.10
40 116 0.86
41 6 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
Found at i:82197050 original size:80 final size:81
Alignment explanation
Indices: 82196912--82197098 Score: 308
Period size: 80 Copynumber: 2.3 Consensus size: 81
82196902 ATGATTATTC
* *
82196912 GACTGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGA
1 GACT-ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGA
82196977 AGGCATTTGTGCGAG-T
65 AGGCATTTGTGCGAGTT
82196993 GACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAA
1 GACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAA
*
82197058 GGTATTTGTGCGAGTT
66 GGCATTTGTGCGAGTT
*
82197074 G-CTATATCC-GGCTAAATCTCGAAGG
1 GACTATATCCGGGCTAAATCCCGAAGG
82197099 TACTTGGGTT
Statistics
Matches: 101, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
79 15 0.15
80 80 0.79
81 6 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
GACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAA
GGCATTTGTGCGAGTT
Found at i:82198771 original size:90 final size:90
Alignment explanation
Indices: 82198613--82198825 Score: 227
Period size: 90 Copynumber: 2.4 Consensus size: 90
82198603 ACCAAATAGG
*
82198613 GTGCCAAAGCCATGTCCCAGACATGGTCTTACATGGAGCAGCACATCGATGCCATATCCCAGATA
1 GTGCCAAAGCCATGTCCCAGACATGGTCTTACATGGAGCAGCACATCGATGCCATATCCCAGACA
82198678 TGGTCTTATACGAAGTCCCGAGTCA
66 TGGTCTTATACGAAGTCCCGAGTCA
* * ** * * *
82198703 GTGCCAACGCCATGTCCTAGACATGGTCTTATACA-GGA-CCTCATATCGATGCTATGTCCCAGA
1 GTGCCAAAGCCATGTCCCAGACATGGTC-T-TACATGGAGCAGCACATCGATGCCATATCCCAGA
* * *
82198766 CATGGTTTTATACGAAATCACTCGA-TGA
64 CATGGTCTTATACGAAGTC-C-CGAGTCA
* * * *
82198794 -TGCCGAAGCCATATCCCTGATATGGTCTTACA
1 GTGCCAAAGCCATGTCCCAGACATGGTCTTACA
82198826 CAGGATCTCA
Statistics
Matches: 102, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
88 4 0.04
89 1 0.01
90 83 0.81
91 7 0.07
92 7 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (90 bp):
GTGCCAAAGCCATGTCCCAGACATGGTCTTACATGGAGCAGCACATCGATGCCATATCCCAGACA
TGGTCTTATACGAAGTCCCGAGTCA
Found at i:82198829 original size:90 final size:90
Alignment explanation
Indices: 82198613--82198871 Score: 222
Period size: 90 Copynumber: 2.8 Consensus size: 90
82198603 ACCAAATAGG
* * * * ** * *
82198613 GTGCCAAAGCCATGTCCCAGACATGGTCTTACA-TGGAGCAGCACATCGATGCCATATCCCAGAT
1 GTGCCAACGCCATATCCTAGACATGGTCTTACACAGGA-CCTCATATCGATGCCATATCCCAGAC
*
82198677 ATGGTCTTATACGAAGTCCCGAGTCA
65 ATGGTCTTATACGAAATCCCGAGTCA
* * * *
82198703 GTGCCAACGCCATGTCCTAGACATGGTCTTATACAGGACCTCATATCGATGCTATGTCCCAGACA
1 GTGCCAACGCCATATCCTAGACATGGTCTTACACAGGACCTCATATCGATGCCATATCCCAGACA
* *
82198768 TGGTTTTATACGAAATCACTCGA-TGA
66 TGGTCTTATACGAAATC-C-CGAGTCA
* * *
82198794 -TGCCGAA-GCCATATCCCT-GATATGGTCTTACACAGGATCTCATATCAATACCGATGCCATGT
1 GTGCC-AACGCCATAT-CCTAGACATGGTCTTACACAGGA-C-C---TC-ATATCGATGCCATAT
82198856 CCCAGACATGGTCTTA
58 CCCAGACATGGTCTTA
82198872 CACGGGATCT
Statistics
Matches: 139, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
90 93 0.67
91 12 0.09
92 4 0.03
95 2 0.01
96 28 0.20
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (90 bp):
GTGCCAACGCCATATCCTAGACATGGTCTTACACAGGACCTCATATCGATGCCATATCCCAGACA
TGGTCTTATACGAAATCCCGAGTCA
Found at i:82200588 original size:40 final size:40
Alignment explanation
Indices: 82200533--82200616 Score: 150
Period size: 40 Copynumber: 2.1 Consensus size: 40
82200523 TTTATCGCCC
* *
82200533 ACTTGATACTCAATTTCTTTTCTTTTCAAATCCGCATAAG
1 ACTTGATACTCAATTTCTTTTCTTTTCAAATACACATAAG
82200573 ACTTGATACTCAATTTCTTTTCTTTTCAAATACACATAAG
1 ACTTGATACTCAATTTCTTTTCTTTTCAAATACACATAAG
82200613 ACTT
1 ACTT
82200617 TTGCCTATCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.43
Consensus pattern (40 bp):
ACTTGATACTCAATTTCTTTTCTTTTCAAATACACATAAG
Found at i:82203233 original size:39 final size:39
Alignment explanation
Indices: 82203179--82203341 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
82203169 TGTGAATGAA
82203179 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
82203218 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
82203257 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * **
82203296 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
82203336 TGTGCG
1 TGTGCG
82203342 GGTTACCATA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:82209742 original size:29 final size:29
Alignment explanation
Indices: 82209652--82209811 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
82209642 ACTCGATTTC
* * **
82209652 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
82209681 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
82209709 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
82209739 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
82209768 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
82209797 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
82209812 ATCCAGCATC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:82214486 original size:39 final size:39
Alignment explanation
Indices: 82214432--82214594 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
82214422 TGTGAATGAA
82214432 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
82214471 TGTGCGAATTGTGATATCTGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
82214510 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * **
82214549 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
82214589 TGTGCG
1 TGTGCG
82214595 GGTTACCATA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 97 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:82220559 original size:40 final size:40
Alignment explanation
Indices: 82220500--82220707 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
82220490 CATTGGACTG
* * *
82220500 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
82220540 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * * **
82220580 ATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
82220620 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * * *
82220660 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
82220700 ATATCCGG
1 ATATCCGG
82220708 TTAAATTCCG
Statistics
Matches: 137, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
39 3 0.02
40 132 0.96
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:82222595 original size:48 final size:48
Alignment explanation
Indices: 82222534--82222801 Score: 326
Period size: 48 Copynumber: 5.6 Consensus size: 48
82222524 AAATGTGCCT
* *
82222534 GTGTAAGACCATGTGTGGGACATAGCATCAGCGATGATATGTGTACCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATGTGTACCA
* *
82222582 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATGTGTACCA
* * **
82222630 GTGTAAGACCATGTCTAGGACATGGCATC-GACAATGATATGTGTATTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAG-CGATGATATGTGTACCA
* * * * **
82222678 ATGTAAGACCATGTTTGGGACATGGCATCGGTGATGATATGTGTGGCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATGTGTACCA
* * *
82222726 GTGTAAGATCATGTCTAGGG-CATGGCATCAGCGATGATATGTGGATTCA
1 GTGTAAGACCATGTCT-GGGACATGGCATCAGCGATGATATGTGTA-CCA
*
82222775 -TGTAAGACCATGTCAGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
82222802 TGGTACTTTA
Statistics
Matches: 188, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
47 4 0.02
48 178 0.95
49 6 0.03
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATGTGTACCA
Found at i:82222691 original size:96 final size:96
Alignment explanation
Indices: 82222527--82222801 Score: 390
Period size: 96 Copynumber: 2.9 Consensus size: 96
82222517 CTGTGCTAAA
* * * * ** *
82222527 TGTGCCTGTGTAAGACCATGTGTGGGACATAGCATCAGCGATGATATGTGTACCAGTGTAAGACC
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCGATGATATGTGTATTAATGTAAGACC
82222592 ATGTCTGGGACATGGCATCGGCGATGATATG
66 ATGTCTGGGACATGGCATCGGCGATGATATG
*
82222623 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GACAATGATATGTGTATTAATGTAAGAC
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCAG-CGATGATATGTGTATTAATGTAAGAC
* *
82222687 CATGTTTGGGACATGGCATCGGTGATGATATG
65 CATGTCTGGGACATGGCATCGGCGATGATATG
* * * * *
82222719 TGTGGCAGTGTAAGATCATGTCTAGGGCATGGCATCAGCGATGATATGTGGATTCATGTAAGACC
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCGATGATATGTGTATTAATGTAAGACC
*
82222784 ATGTCAGGGACATGGCAT
66 ATGTCTGGGACATGGCAT
82222802 TGGTACTTTA
Statistics
Matches: 159, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
95 1 0.01
96 157 0.99
97 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (96 bp):
TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCGATGATATGTGTATTAATGTAAGACC
ATGTCTGGGACATGGCATCGGCGATGATATG
Found at i:82222795 original size:144 final size:144
Alignment explanation
Indices: 82222535--82222801 Score: 389
Period size: 144 Copynumber: 1.9 Consensus size: 144
82222525 AATGTGCCTG
82222535 TGTAAGACCATGTGTGGGACATAGCATCAGCGATGATATGTGTACCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTGTGGGACATAGCATCAGCGATGATATGTGTACCAGTGTAAGACCATGTCTGG
*
82222600 GACATGGCATCGGCGATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACAAT
66 GACATGGCATCAGCGATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACAAT
82222665 GATATGTGTATTAA
131 GATATGTGTATTAA
* * * * ** *
82222679 TGTAAGACCATGTTTGGGACATGGCATCGGTGATGATATGTGTGGCAGTGTAAGATCATGTCTAG
1 TGTAAGACCATGTGTGGGACATAGCATCAGCGATGATATGTGTACCAGTGTAAGACCATGTCT-G
*
82222744 GG-CATGGCATCAGCGATGATATGTG-GATTCA-TGTAAGACCATGTC-AGGGACATGGCAT
65 GGACATGGCATCAGCGATGATATGTGTG--CCAGTGTAAGACCATGTCTA-GGACATGGCAT
82222802 TGGTACTTTA
Statistics
Matches: 110, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
143 2 0.02
144 103 0.94
145 5 0.05
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (144 bp):
TGTAAGACCATGTGTGGGACATAGCATCAGCGATGATATGTGTACCAGTGTAAGACCATGTCTGG
GACATGGCATCAGCGATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACAAT
GATATGTGTATTAA
Found at i:82229163 original size:29 final size:29
Alignment explanation
Indices: 82229124--82229202 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
82229114 CTTAATAATC
*
82229124 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
82229154 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
82229183 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
82229203 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:82237757 original size:2 final size:2
Alignment explanation
Indices: 82237750--82237783 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
82237740 GCATAATTTC
*
82237750 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82237784 GCTAATTATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82239676 original size:20 final size:22
Alignment explanation
Indices: 82239647--82239686 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
82239637 ATTGATTTAT
*
82239647 GGAAATTATA-AT-TATTATTA
1 GGAAAATATATATATATTATTA
82239667 GGAAAATATATATATATTAT
1 GGAAAATATATATATATTAT
82239687 CGTATTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (22 bp):
GGAAAATATATATATATTATTA
Found at i:82241665 original size:25 final size:25
Alignment explanation
Indices: 82241636--82241683 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82241626 TTATAATATG
* * *
82241636 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
82241661 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
82241684 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:82241752 original size:20 final size:20
Alignment explanation
Indices: 82241727--82241785 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
82241717 TAAATATGGT
82241727 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
82241747 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
82241767 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
82241786 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:82241767 original size:11 final size:11
Alignment explanation
Indices: 82241731--82241785 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
82241721 TATGGTATGT
82241731 ATGATATGCAC
1 ATGATATGCAC
* *
82241742 ATGAAATG--T
1 ATGATATGCAC
82241751 ATGATATGCAC
1 ATGATATGCAC
*
82241762 ATGATATG--T
1 ATGATATGCAC
82241771 ATGATATGCAC
1 ATGATATGCAC
82241782 ATGA
1 ATGA
82241786 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:82241862 original size:24 final size:24
Alignment explanation
Indices: 82241835--82241999 Score: 246
Period size: 24 Copynumber: 7.0 Consensus size: 24
82241825 GGAGGAAGTA
82241835 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
82241859 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
82241882 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
82241906 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
82241929 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
82241953 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* *
82241977 AAAAGAGGC-TAGGCTCCAGTTAT
1 AAAAG-GGCTTATGCCCCAGTTAT
82242000 ATGATAAAGC
Statistics
Matches: 132, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
23 46 0.35
24 83 0.63
25 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:82241904 original size:47 final size:47
Alignment explanation
Indices: 82241835--82241999 Score: 244
Period size: 47 Copynumber: 3.5 Consensus size: 47
82241825 GGAGGAAGTA
82241835 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
82241881 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
** *
82241929 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
* *
82241977 AAAAGAGGC-TAGGCTCCAGTTAT
1 AAAAG-GGCTTATGCCCCAGTTAT
82242000 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
47 80 0.73
48 27 0.25
49 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:82241951 original size:71 final size:70
Alignment explanation
Indices: 82241835--82242000 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 70
82241825 GGAGGAAGTA
82241835 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCA
82241900 GTTATC
65 GTTATC
** *
82241906 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCA
*
82241971 GTTATT
65 GTTATC
* *
82241977 AAAAGAGGC-TAGGCTCCAGTTATA
1 AAAAG-GGCTTATGCCCCAGTTATA
82242001 TGATAAAGCA
Statistics
Matches: 87, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
70 13 0.15
71 71 0.82
72 3 0.03
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (70 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCAG
TTATC
Found at i:82242226 original size:31 final size:31
Alignment explanation
Indices: 82242191--82242285 Score: 138
Period size: 31 Copynumber: 3.1 Consensus size: 31
82242181 CGTTTACAGT
*
82242191 AAAGGCTTCGGCCCAGTAGTAGGAAACT-TGA
1 AAAGGCTTCGGCCCAGTAATAGGAAA-TATGA
*
82242222 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATAGGAAATATGA
* *
82242253 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATAGGAAATATGA
82242284 AA
1 AA
82242286 TATGAAAAGG
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
30 1 0.02
31 59 0.98
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATAGGAAATATGA
Found at i:82244321 original size:20 final size:22
Alignment explanation
Indices: 82244292--82244331 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
82244282 ATTGATTTAT
*
82244292 GGAAATTATA-AT-TATTATTA
1 GGAAAATATATATATATTATTA
82244312 GGAAAATATATATATATTAT
1 GGAAAATATATATATATTAT
82244332 CGTATTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (22 bp):
GGAAAATATATATATATTATTA
Found at i:82246391 original size:20 final size:20
Alignment explanation
Indices: 82246366--82246424 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
82246356 TAAATATGGT
82246366 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
82246386 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
82246406 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
82246425 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:82246406 original size:11 final size:11
Alignment explanation
Indices: 82246370--82246424 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
82246360 TATGGTATGT
82246370 ATGATATGCAC
1 ATGATATGCAC
* *
82246381 ATGAAATG--T
1 ATGATATGCAC
82246390 ATGATATGCAC
1 ATGATATGCAC
*
82246401 ATGATATG--T
1 ATGATATGCAC
82246410 ATGATATGCAC
1 ATGATATGCAC
82246421 ATGA
1 ATGA
82246425 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:82246502 original size:24 final size:24
Alignment explanation
Indices: 82246475--82246641 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
82246465 GAGGAAGTGA
82246475 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
82246499 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
82246523 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
82246547 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
82246570 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
82246594 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
82246618 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
82246642 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 101 0.75
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:82246592 original size:71 final size:71
Alignment explanation
Indices: 82246475--82246642 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
82246465 GAGGAAGTGA
82246475 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
82246540 AGTTATC
65 AGTTATC
** *
82246547 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
82246612 GTTATT
66 GTTATC
*
82246618 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
82246643 TGATAAAGCA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 54 0.61
72 35 0.39
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:82246868 original size:31 final size:31
Alignment explanation
Indices: 82246833--82246927 Score: 138
Period size: 31 Copynumber: 3.1 Consensus size: 31
82246823 CGTTTACAGT
*
82246833 AAAGGCTTCGGCCCAGTAGTAGGAAACT-TGA
1 AAAGGCTTCGGCCCAGTAATAGGAAA-TATGA
*
82246864 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATAGGAAATATGA
* *
82246895 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATAGGAAATATGA
82246926 AA
1 AA
82246928 TATGAAAAGG
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
30 1 0.02
31 59 0.98
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATAGGAAATATGA
Found at i:82248246 original size:48 final size:48
Alignment explanation
Indices: 82248193--82248286 Score: 118
Period size: 48 Copynumber: 2.0 Consensus size: 48
82248183 AATCACTCGA
* * *
82248193 CGATGCCAAAGCCGTATCCCT-GATATGGTCTTGCACGGGATCTCATAT
1 CGATGCCAAAGCCATAT-CCTAGATATGGTCTTACACGAGATCTCATAT
* * *
82248241 CGATGCCGATGCCATGTCCTAGATATGGTCTTACACGAGATCTCAT
1 CGATGCCAAAGCCATATCCTAGATATGGTCTTACACGAGATCTCAT
82248287 TAATCATGGT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
47 3 0.08
48 36 0.92
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (48 bp):
CGATGCCAAAGCCATATCCTAGATATGGTCTTACACGAGATCTCATAT
Found at i:82248820 original size:16 final size:16
Alignment explanation
Indices: 82248799--82248829 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82248789 TTTCTCACTT
82248799 AATTTACTCCTTTTTC
1 AATTTACTCCTTTTTC
*
82248815 AATTTAGTCCTTTTT
1 AATTTACTCCTTTTT
82248830 ATGCATTTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.19, G:0.03, T:0.58
Consensus pattern (16 bp):
AATTTACTCCTTTTTC
Found at i:82262026 original size:23 final size:23
Alignment explanation
Indices: 82261998--82262319 Score: 197
Period size: 23 Copynumber: 14.0 Consensus size: 23
82261988 AGAGCTTTTG
* *
82261998 TGGCATATTTTGTAATGCCTTTA
1 TGGCATATTCTATAATGCCTTTA
* *
82262021 TAGCATATTCTATAATGTCTTTA
1 TGGCATATTCTATAATGCCTTTA
* * *
82262044 TGGCGTATTCTGTAATGCCTTTG
1 TGGCATATTCTATAATGCCTTTA
* *
82262067 TGGCGTATTCTATAATGCCTTTG
1 TGGCATATTCTATAATGCCTTTA
* * *
82262090 TGGCGTATTCCATAATGCCTTTG
1 TGGCATATTCTATAATGCCTTTA
** *
82262113 TGGTGTATT-TCGTAATGCCTTTAA
1 TGGCATATTCT-ATAATGCCTTT-A
* *
82262137 TGTGTAT-TTC-GTAATGCCTTTGA
1 TG-GCATATTCTATAATGCCTTT-A
** *
82262160 -GGCATATTC-ATTAATTTCTTTG
1 TGGCATATTCTA-TAATGCCTTTA
** * *
82262182 TGGTGTATTCTATAATACCTTTG
1 TGGCATATTCTATAATGCCTTTA
* *
82262205 TGGCATATTCTATAATGTCTTTG
1 TGGCATATTCTATAATGCCTTTA
* * * *
82262228 TGACATAATCTGTAATGCCTTTG
1 TGGCATATTCTATAATGCCTTTA
* * *
82262251 TGACATATTCTGTAATGCCTTTG
1 TGGCATATTCTATAATGCCTTTA
* * *
82262274 TGGCATATT-TAGTAGTGCCTATG
1 TGGCATATTCTA-TAATGCCTTTA
** *
82262297 TGTTATATTCTGTAATGCCTTTA
1 TGGCATATTCTATAATGCCTTTA
82262320 CAGTGTATTC
Statistics
Matches: 244, Mismatches: 45, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
21 3 0.01
22 5 0.02
23 227 0.93
24 6 0.02
25 3 0.01
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.45
Consensus pattern (23 bp):
TGGCATATTCTATAATGCCTTTA
Found at i:82262076 original size:46 final size:46
Alignment explanation
Indices: 82261994--82262318 Score: 282
Period size: 46 Copynumber: 7.1 Consensus size: 46
82261984 AAACAGAGCT
* * * * *
82261994 TTTGTGGCATATTTTGTAATGCCTTTATAGCATATTCTATAATGTC
1 TTTGTGGCGTATTCTGTAATGCCTTTGTGGCATATTCTATAATGCC
* *
82262040 TTTATGGCGTATTCTGTAATGCCTTTGTGGCGTATTCTATAATGCC
1 TTTGTGGCGTATTCTGTAATGCCTTTGTGGCATATTCTATAATGCC
** ** *
82262086 TTTGTGGCGTATTCCATAATGCCTTTGTGGTGTATT-TCGTAATGCC
1 TTTGTGGCGTATTCTGTAATGCCTTTGTGGCATATTCT-ATAATGCC
* * * **
82262132 TTTAAT-GTGTATT-TCGTAATGCCTTTGAGGCATATTC-ATTAATTTC
1 TTT-GTGGCGTATTCT-GTAATGCCTTTGTGGCATATTCTA-TAATGCC
* * * *
82262178 TTTGTGGTGTATTCTATAATACCTTTGTGGCATATTCTATAATGTC
1 TTTGTGGCGTATTCTGTAATGCCTTTGTGGCATATTCTATAATGCC
* * * * *
82262224 TTTGTGACATAATCTGTAATGCCTTTGTGACATATTCTGTAATGCC
1 TTTGTGGCGTATTCTGTAATGCCTTTGTGGCATATTCTATAATGCC
* * * ** *
82262270 TTTGTGGCATATT-TAGTAGTGCCTATGTGTTATATTCTGTAATGCC
1 TTTGTGGCGTATTCT-GTAATGCCTTTGTGGCATATTCTATAATGCC
82262316 TTT
1 TTT
82262319 ACAGTGTATT
Statistics
Matches: 228, Mismatches: 42, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
45 3 0.01
46 222 0.97
47 3 0.01
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.46
Consensus pattern (46 bp):
TTTGTGGCGTATTCTGTAATGCCTTTGTGGCATATTCTATAATGCC
Found at i:82262105 original size:69 final size:69
Alignment explanation
Indices: 82261994--82262318 Score: 282
Period size: 69 Copynumber: 4.7 Consensus size: 69
82261984 AAACAGAGCT
* * * * * * *
82261994 TTTGTGGCATATTTTGTAATGCCTTTATAGCATATTCTATAATGTCTTTATGGCGTATTCTGTAA
1 TTTGTGGCATATTCTATAATGCCTTTGTGGCATATTCCATAATGCCTTTGTGGCGTATTCTGTAA
82262059 TGCC
66 TGCC
* * *
82262063 TTTGTGGCGTATTCTATAATGCCTTTGTGGCGTATTCCATAATGCCTTTGTGGTGTATT-TCGTA
1 TTTGTGGCATATTCTATAATGCCTTTGTGGCATATTCCATAATGCCTTTGTGGCGTATTCT-GTA
82262127 ATGCC
65 ATGCC
* * * * ** * *
82262132 TTTAATGTGTAT-TTC-GTAATGCCTTTGAGGCATATT-CATTAATTTCTTTGTGGTGTATTCTA
1 TTT-GTG-GCATATTCTATAATGCCTTTGTGGCATATTCCA-TAATGCCTTTGTGGCGTATTCTG
*
82262194 TAATACC
63 TAATGCC
* * * ** * *
82262201 TTTGTGGCATATTCTATAATGTCTTTGTGACATAATCTGTAATGCCTTTGTGACATATTCTGTAA
1 TTTGTGGCATATTCTATAATGCCTTTGTGGCATATTCCATAATGCCTTTGTGGCGTATTCTGTAA
82262266 TGCC
66 TGCC
* * ** **
82262270 TTTGTGGCATATT-TAGTAGTGCCTATGTGTTATATTCTGTAATGCCTTT
1 TTTGTGGCATATTCTA-TAATGCCTTTGTGGCATATTCCATAATGCCTTT
82262319 ACAGTGTATT
Statistics
Matches: 205, Mismatches: 42, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
67 3 0.01
68 10 0.05
69 184 0.90
70 6 0.03
71 2 0.01
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.46
Consensus pattern (69 bp):
TTTGTGGCATATTCTATAATGCCTTTGTGGCATATTCCATAATGCCTTTGTGGCGTATTCTGTAA
TGCC
Found at i:82262329 original size:69 final size:66
Alignment explanation
Indices: 82262184--82262345 Score: 166
Period size: 69 Copynumber: 2.4 Consensus size: 66
82262174 TTTCTTTGTG
* * *
82262184 GTGTATTCTATAATACCTTTGTGGCATATTCTATAATGTCTTTGTGACATAATCTGTAATGCCTT
1 GTGTATTCTATAATGCCTTTGTGGCATATTCTATAATGCCTATGTGACATAATCTGTAATGCCTT
82262249 T
66 T
* * ** *
82262250 GTGACATATTCTGTAATGCCTTTGTGGCATATT-TAGTAGTGCCTATGTGTTATATTCTGTAATG
1 GTG---TATTCTATAATGCCTTTGTGGCATATTCTA-TAATGCCTATGTGACATAATCTGTAATG
82262314 CCTTT
62 CCTTT
82262319 ACAGTGTATTCTATAATGTCC-TTGTGG
1 ---GTGTATTCTATAATG-CCTTTGTGG
82262346 TAAGTTTTGT
Statistics
Matches: 79, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
66 3 0.04
68 2 0.03
69 69 0.87
70 2 0.03
72 3 0.04
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.44
Consensus pattern (66 bp):
GTGTATTCTATAATGCCTTTGTGGCATATTCTATAATGCCTATGTGACATAATCTGTAATGCCTT
T
Found at i:82266720 original size:19 final size:19
Alignment explanation
Indices: 82266678--82266734 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
82266668 AAATTATAAA
*
82266678 AAAAATTCAAAATGATTT-T
1 AAAAATTTAAAAT-ATTTAT
*
82266697 TAAAATTTAAAATATTTAT
1 AAAAATTTAAAATATTTAT
*
82266716 AAAAATTTTAAA-ATTTAT
1 AAAAATTTAAAATATTTAT
82266734 A
1 A
82266735 TTTTTAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 11 0.33
19 22 0.67
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (19 bp):
AAAAATTTAAAATATTTAT
Found at i:82266746 original size:27 final size:27
Alignment explanation
Indices: 82266694--82266747 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
82266684 TCAAAATGAT
*
82266694 TTTTAAAATTTAAAATATTTATAAAAA
1 TTTTAAAATTTAAAATATTTAAAAAAA
* *
82266721 TTTTAAAATTT-ATATTTTTAAAAAAA
1 TTTTAAAATTTAAAATATTTAAAAAAA
82266747 T
1 T
82266748 ATATAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (27 bp):
TTTTAAAATTTAAAATATTTAAAAAAA
Found at i:82266757 original size:11 final size:11
Alignment explanation
Indices: 82266741--82266788 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
82266731 TATATTTTTA
82266741 AAAAAATATAT
1 AAAAAATATAT
82266752 AAAAAATATA-
1 AAAAAATATAT
*
82266762 AAAAAAT-TCT
1 AAAAAATATAT
*
82266772 AAAAGATATAT
1 AAAAAATATAT
82266783 AAAAAA
1 AAAAAA
82266789 GTTAAGATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 1 0.03
10 13 0.42
11 17 0.55
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (11 bp):
AAAAAATATAT
Found at i:82266766 original size:20 final size:22
Alignment explanation
Indices: 82266739--82266788 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
82266729 TTTATATTTT
82266739 TAAAAAAATATATAAAA-A-ATA
1 TAAAAAAAT-TATAAAAGATATA
*
82266760 TAAAAAAATTCTAAAAGATATA
1 TAAAAAAATTATAAAAGATATA
82266782 TAAAAAA
1 TAAAAAA
82266789 GTTAAGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 6 0.23
21 10 0.38
22 10 0.38
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (22 bp):
TAAAAAAATTATAAAAGATATA
Found at i:82277446 original size:40 final size:40
Alignment explanation
Indices: 82277337--82277476 Score: 221
Period size: 40 Copynumber: 3.5 Consensus size: 40
82277327 TGAATGATAC
* ** *
82277337 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
82277377 CCGGGCTAAGACCC-AAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
82277416 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
82277456 CCGGGCTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
82277477 ATTGTGCAAA
Statistics
Matches: 94, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
39 33 0.35
40 61 0.65
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
Found at i:82277538 original size:40 final size:40
Alignment explanation
Indices: 82277337--82277539 Score: 205
Period size: 40 Copynumber: 5.1 Consensus size: 40
82277327 TGAATGATAC
* * * * *
82277337 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATAT
*
82277377 CCGGGCTAAGACCC-AAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGGTTATAT
*
82277416 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGGTTATAT
* * **** *
82277456 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATAT
* ** *
82277496 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTGTAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATAT
82277536 CCGG
1 CCGG
82277540 TTAAATCCCG
Statistics
Matches: 137, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 101 0.74
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATAT
Found at i:82285439 original size:39 final size:40
Alignment explanation
Indices: 82285342--82285481 Score: 221
Period size: 40 Copynumber: 3.5 Consensus size: 40
82285332 TGAATGATAC
* ** *
82285342 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
82285382 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
82285422 CC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
82285461 CCGGGCTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
82285482 ATTGTGCAAA
Statistics
Matches: 94, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
39 39 0.41
40 53 0.56
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
Found at i:82285503 original size:79 final size:80
Alignment explanation
Indices: 82285342--82285521 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 80
82285332 TGAATGATAC
* * *
82285342 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
* * **** *
82285407 TGCGAGTTGTTATAT
66 TGCAAATCACCAAAT
*
82285422 CC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGC-ATT
82285485 -GTGCAAATCACCAAAT
64 CGTGCAAATCACCAAAT
*
82285501 CCGGGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
82285522 ATTGTGCTTG
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
79 61 0.72
80 24 0.28
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAATCACCAAAT
Found at i:82285543 original size:40 final size:40
Alignment explanation
Indices: 82285342--82285544 Score: 205
Period size: 40 Copynumber: 5.1 Consensus size: 40
82285332 TGAATGATAC
* * * * *
82285342 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATAT
*
82285382 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGGTTATAT
*
82285422 CC-GGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGGTTATAT
* * **** *
82285461 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATAT
* ** *
82285501 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTGTAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATAT
82285541 CCGG
1 CCGG
82285545 TTAAATCCCG
Statistics
Matches: 137, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
39 41 0.30
40 93 0.68
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATAT
Found at i:82288144 original size:40 final size:40
Alignment explanation
Indices: 82288065--82288248 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
82288055 GCTACTCGTT
* * *
82288065 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAAATCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
82288105 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
82288145 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
82288183 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGGA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
82288224 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82288249 CATCATTCGA
Statistics
Matches: 124, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 25 0.20
39 21 0.17
40 66 0.53
41 12 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:82288188 original size:78 final size:81
Alignment explanation
Indices: 82288067--82288248 Score: 221
Period size: 78 Copynumber: 2.3 Consensus size: 81
82288057 TACTCGTTCA
* * *
82288067 AATGCCTTCGGGACATAGCCCAG-TTATAGTAAATCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAAATCGCACAAATGCCTTC-GGATCTTAACCCGG
*
82288130 ATTTAATAAC-TCGCAC
65 ATTTAATAACTTAGCAC
* **
82288146 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAAATCGCACAAATGCCTTCGGATCTTAACCCGGA
* * *
82288209 TTTAGTCACTTAGGAC
66 TTTAATAACTTAGCAC
*
82288225 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
82288249 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 3 0.03
78 46 0.52
79 28 0.32
80 11 0.12
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAAATCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAATAACTTAGCAC
Found at i:82293721 original size:40 final size:40
Alignment explanation
Indices: 82293594--82293723 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
82293584 ATGCTGGAAA
* *
82293594 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
82293634 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
82293674 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
82293714 TTATATCCGG
1 TTATATCCGG
82293724 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:82296547 original size:78 final size:81
Alignment explanation
Indices: 82296427--82296608 Score: 257
Period size: 78 Copynumber: 2.3 Consensus size: 81
82296417 TACTCGTTCA
* *
82296427 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
82296490 ATTTAGTAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
**
82296506 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
82296569 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
82296585 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
82296609 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:82296608 original size:40 final size:40
Alignment explanation
Indices: 82296425--82296608 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
82296415 GCTACTCGTT
*
82296425 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
82296465 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
82296505 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
82296543 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
82296584 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82296609 CATCATTCGA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 21 0.16
40 69 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:82304570 original size:78 final size:81
Alignment explanation
Indices: 82304450--82304631 Score: 257
Period size: 78 Copynumber: 2.3 Consensus size: 81
82304440 TACTCGTTCA
* *
82304450 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
82304513 ATTTAGTAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
**
82304529 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
82304592 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
82304608 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
82304632 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:82304631 original size:40 final size:40
Alignment explanation
Indices: 82304448--82304631 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
82304438 GCTACTCGTT
*
82304448 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
82304488 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
82304528 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
82304566 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
82304607 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82304632 CATCATTCGA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 21 0.16
40 69 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:82308460 original size:43 final size:43
Alignment explanation
Indices: 82308411--82308536 Score: 164
Period size: 43 Copynumber: 2.9 Consensus size: 43
82308401 TATCACATAT
*
82308411 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATA-A
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACA-ACA
* * * *
82308454 CGATGCCAATGTCCTAGACATGTTCTTACACGTAATCACAACA
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAACA
* * *
82308497 CAATGCCAATGTCCCAAACATGGTCTTACATGTAATCACA
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACA
82308537 TCTCGGTAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 71 0.99
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAACA
Found at i:82319279 original size:5 final size:5
Alignment explanation
Indices: 82319264--82319304 Score: 73
Period size: 5 Copynumber: 8.2 Consensus size: 5
82319254 GAACTCATGC
*
82319264 TCTTT TTTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT T
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT T
82319305 TAAATTCGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TCTTT
Found at i:82322161 original size:12 final size:12
Alignment explanation
Indices: 82322141--82322183 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
82322131 AAAGTTGATA
82322141 ATAATTAATATAT
1 ATAA-TAATATAT
*
82322154 ATTATAATATAT
1 ATAATAATATAT
*
82322166 ATAATTATATAT
1 ATAATAATATAT
82322178 -TAATAA
1 ATAATAA
82322184 CTATCATCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
11 5 0.19
12 18 0.69
13 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
ATAATAATATAT
Found at i:82322177 original size:22 final size:19
Alignment explanation
Indices: 82322138--82322179 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
82322128 TATAAAGTTG
82322138 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
82322157 ATAATATATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
82322179 A
1 A
82322180 ATAACTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:82333351 original size:30 final size:31
Alignment explanation
Indices: 82333306--82333364 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
82333296 TCCCGAGCCT
82333306 AGGGGAAAAAGTGTAATTATGCAAAAGTTTA
1 AGGGGAAAAAGTGTAATTATGCAAAAGTTTA
* * *
82333337 AGGGTAAAAA-TGTAATTTTGCCAAAGTT
1 AGGGGAAAAAGTGTAATTATGCAAAAGTT
82333365 CATATTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 16 0.64
31 9 0.36
ACGTcount: A:0.42, C:0.05, G:0.24, T:0.29
Consensus pattern (31 bp):
AGGGGAAAAAGTGTAATTATGCAAAAGTTTA
Found at i:82337451 original size:93 final size:93
Alignment explanation
Indices: 82337292--82337463 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
82337282 GTCCATAAGT
*** * *
82337292 GAACTCGGACTCAACTCAACGAGCTCGGGGGTTCGCATCCATGAGTTAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82337357 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
82337385 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82337450 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
82337464 CAAATATCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82337452 original size:46 final size:46
Alignment explanation
Indices: 82337283--82337459 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
82337273 ATGTAACCTG
* *** *
82337283 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGGGTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCA
* * * *
82337329 TCCATGAGTTAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCA
* *
82337379 T-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCA
82337422 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82337460 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 63 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCA
Found at i:82337478 original size:46 final size:46
Alignment explanation
Indices: 82337339--82337478 Score: 128
Period size: 46 Copynumber: 3.0 Consensus size: 46
82337329 TCCATGAGTT
* * * *
82337339 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA-CG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCCAGTG
* *
82337386 AACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--CAGTG
*
82337432 AACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCCAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCCAGTG
82337478 A
1 A
82337479 CATGTCACTT
Statistics
Matches: 75, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 1 0.01
46 34 0.45
47 28 0.37
48 4 0.05
50 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCCAGTG
Found at i:82348613 original size:53 final size:53
Alignment explanation
Indices: 82348496--82348637 Score: 160
Period size: 53 Copynumber: 2.6 Consensus size: 53
82348486 AGGAAATCAT
* * * * * *
82348496 GTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGCAAAGATCCCAT
1 GTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAAGATACCAC
* * * *
82348551 GTAAGACCAT-TCCAAGGCATGGCAATGGTGAGTTCATAAGGCCAGGATACCAC
1 GTAAGACCATGT-CAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATACCAC
82348604 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
82348638 TAAAAAGGAA
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
53 44 0.60
54 5 0.07
55 24 0.33
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (53 bp):
GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATACCAC
Found at i:82354791 original size:30 final size:30
Alignment explanation
Indices: 82354755--82354855 Score: 127
Period size: 28 Copynumber: 3.5 Consensus size: 30
82354745 GACAAGATTG
* * *
82354755 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
82354785 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
82354813 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
82354842 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82354856 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 23 0.37
29 20 0.32
30 19 0.31
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:82354849 original size:29 final size:29
Alignment explanation
Indices: 82354755--82354855 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
82354745 GACAAGATTG
* * * *
82354755 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTGAAAA-TATATA
*
82354785 GCACTAAGTGTGCGAGTTTG--ATTATATA
1 GCACTAAGTGTGCGAG-TTGAAAATATATA
*
82354813 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTTGAAAATATATA
82354842 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82354856 GATTCACTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 22 0.36
30 15 0.25
31 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAATATATA
Found at i:82362731 original size:30 final size:30
Alignment explanation
Indices: 82362695--82362824 Score: 169
Period size: 30 Copynumber: 4.4 Consensus size: 30
82362685 ACAAGATTGA
* * * * *
82362695 CACTAAGTGTGCGGGTTTAAAATTGTACAG
1 CACTAAGTGTGCGAGCTGAAAATTATATAG
*
82362725 CACTAAGTGTGCGAGTTTG---ATTATATAG
1 CACTAAGTGTGCGAG-CTGAAAATTATATAG
82362753 CACTAAGTGTGCGAGCTGAAAATTATATAG
1 CACTAAGTGTGCGAGCTGAAAATTATATAG
82362783 CACTAAGTGTGCGAGCTGAAAA-TATATAG
1 CACTAAGTGTGCGAGCTGAAAATTATATAG
82362812 CACTAAGTGTGCG
1 CACTAAGTGTGCG
82362825 GATTCACTAT
Statistics
Matches: 91, Mismatches: 5, Indels: 9
0.87 0.05 0.09
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 45 0.49
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (30 bp):
CACTAAGTGTGCGAGCTGAAAATTATATAG
Found at i:82362785 original size:58 final size:58
Alignment explanation
Indices: 82362695--82362824 Score: 172
Period size: 58 Copynumber: 2.2 Consensus size: 58
82362685 ACAAGATTGA
* * * * * *
82362695 CACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATAG
1 CACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATAG
*
82362753 CACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAG
1 CACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATAG
82362812 CACTAAGTGTGCG
1 CACTAAGTGTGCG
82362825 GATTCACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 2 0.03
58 40 0.63
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (58 bp):
CACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATAG
Found at i:82364265 original size:39 final size:39
Alignment explanation
Indices: 82364211--82364321 Score: 186
Period size: 39 Copynumber: 2.8 Consensus size: 39
82364201 GGGTGTTACA
82364211 ATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGT
1 ATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGT
*
82364250 ATCCGGGCCAAAGTCCTGCAGGCTTCGTGCTGGAAATGT
1 ATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGT
** *
82364289 ATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTGG
1 ATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
82364322 TAATATAATT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (39 bp):
ATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGT
Found at i:82369112 original size:39 final size:40
Alignment explanation
Indices: 82369064--82369174 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 40
82369054 GTTATAATAG
*
82369064 CTCGCACAAATGCCTTCGGGACTTA-ACCGGATTTGGGAA
1 CTCGCACAAATGCCTTCGGGACTTAGACCGGATATGGGAA
* **
82369103 CTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCA
1 CTCGCACAAATGCCTTCGGGA-CTTAGACCGGATATGGGAA
* *
82369143 CTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 C-TCGCACAAATGCCTTCGGGACTTAGACCGGA
82369175 CATCATTCGA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
38 3 0.05
39 21 0.34
40 27 0.44
41 11 0.18
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGACCGGATATGGGAA
Found at i:82374344 original size:53 final size:53
Alignment explanation
Indices: 82374166--82374372 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 53
82374156 ATTAGGGTTT
* ** * * * * *
82374166 AAGGATACCAAGTAAGACCATGCCAAGGTAGGGCATTGGTAAGTTTTACAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
82374220 AAGGAAATCTTGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
82374275 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
*
82374328 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
82374373 TAAAAAGGAA
Statistics
Matches: 120, Mismatches: 31, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 47 0.39
54 35 0.29
55 38 0.32
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:82381623 original size:39 final size:39
Alignment explanation
Indices: 82381542--82381704 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
82381532 TATGGTAACC
* *
82381542 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
82381582 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
82381621 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
82381660 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
82381699 CGCACA
1 CGCACA
82381705 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:82389551 original size:38 final size:39
Alignment explanation
Indices: 82389454--82389615 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
82389444 TATGGTAACC
* *
82389454 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
82389494 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
82389533 CGCAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
82389571 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
82389610 CGCACA
1 CGCACA
82389616 TTCATACACA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 36 0.32
39 61 0.54
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:82389613 original size:77 final size:78
Alignment explanation
Indices: 82389462--82389617 Score: 269
Period size: 77 Copynumber: 2.0 Consensus size: 78
82389452 CCCGCACAAA
82389462 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
* *
82389527 ATAGCTCGCACAT
66 ACAACTCGCACAT
*
82389540 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
*
82389604 ACAATTCGCACAT
66 ACAACTCGCACAT
82389617 T
1 T
82389618 CATACACATC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
77 64 0.86
78 10 0.14
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (78 bp):
TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
ACAACTCGCACAT
Found at i:82391765 original size:29 final size:28
Alignment explanation
Indices: 82391732--82391834 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
82391722 GTGACGAGAT
* *
82391732 TGGCACTAAGTGTGCAAGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCT-CAAATATA
* * *
82391761 TGGCACTGAGTGTGCGAGTTCAAATTGTA
1 TGGCACTAAGTGTGCGAGCTCAAA-TATA
* * * *
82391790 TGGCACTATGTGTGCGGGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTCAAAT-ATA
82391819 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82391835 TGATCGAGTA
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
28 4 0.07
29 55 0.93
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTCAAATATA
Found at i:82396886 original size:15 final size:17
Alignment explanation
Indices: 82396855--82396886 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
82396845 ATGAAAATGT
82396855 AATGCAAACACAGTCAA
1 AATGCAAACACAGTCAA
82396872 AATG-AAACA-AGTCAA
1 AATGCAAACACAGTCAA
82396887 TACATTTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.56, C:0.19, G:0.12, T:0.12
Consensus pattern (17 bp):
AATGCAAACACAGTCAA
Found at i:82398501 original size:11 final size:11
Alignment explanation
Indices: 82398485--82398523 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
82398475 CAAGTAACAA
82398485 AAATTAACACT
1 AAATTAACACT
*
82398496 AAATTAACTCT
1 AAATTAACACT
*
82398507 AAATTAA-ATT
1 AAATTAACACT
82398517 AAATTAA
1 AAATTAA
82398524 ATTAAGAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATTAACACT
Found at i:82398516 original size:5 final size:5
Alignment explanation
Indices: 82398485--82398528 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
82398475 CAAGTAACAA
* *
82398485 AAATT AACACT AAATT AACTCT AAATT AAATT AAATT AAATT AA
1 AAATT AA-ATT AAATT AAAT-T AAATT AAATT AAATT AAATT AA
82398529 GAATACAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 25 0.76
6 8 0.24
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (5 bp):
AAATT
Found at i:82398521 original size:10 final size:10
Alignment explanation
Indices: 82398485--82398528 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
82398475 CAAGTAACAA
*
82398485 AAATTAACACT
1 AAATTAA-ATT
*
82398496 AAATTAACTCT
1 AAATTAAAT-T
82398507 AAATTAAATT
1 AAATTAAATT
82398517 AAATTAAATT
1 AAATTAAATT
82398527 AA
1 AA
82398529 GAATACAAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 13 0.45
11 16 0.55
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (10 bp):
AAATTAAATT
Found at i:82400200 original size:46 final size:44
Alignment explanation
Indices: 82400108--82400235 Score: 134
Period size: 46 Copynumber: 2.8 Consensus size: 44
82400098 TGATATGTGT
* *
82400108 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-C-CATTACGAGA
*
82400154 GCCT-GTGTAAGACATGTCTGGGACATGCATCAG-TATTGAGACGAGA
1 G-CTAGTGTAAGACATGTCTGGGACATGCATCAGCCATT---ACGAGA
* * *
82400200 GCTAGTGTAAAACATGTCTGGAACATGCATCGGCCA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCA
82400236 CGAGATATAC
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
43 3 0.04
45 2 0.03
46 61 0.88
47 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATTACGAGA
Found at i:82400349 original size:49 final size:49
Alignment explanation
Indices: 82400294--82400464 Score: 168
Period size: 49 Copynumber: 3.5 Consensus size: 49
82400284 ATTGTATGTT
* * *
82400294 AGTGTAAAACCTGTCTAGGACATGGCATCGACAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCC
** * * * **
82400343 AGTGTAAGACCTGTCTGGGACACAGCATTGGCCTCGATATATGAAAGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* * * **
82400392 GGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGAT-G-TGTTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
82400439 AGTGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACC-TGTCTGGGACATGG
82400465 GGTCGCCATC
Statistics
Matches: 97, Mismatches: 23, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
47 14 0.14
48 15 0.15
49 68 0.70
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
Found at i:82405685 original size:40 final size:40
Alignment explanation
Indices: 82405640--82405807 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
82405630 CGGAATATAA
*
82405640 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTGGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
82405680 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
82405720 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
82405760 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
82405800 CCGGATAT
1 CCGGATAT
82405808 CATTCAATTT
Statistics
Matches: 103, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 102 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:82411966 original size:39 final size:40
Alignment explanation
Indices: 82411866--82412047 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 40
82411856 TCGAATGATG
* * *
82411866 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
82411906 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
82411946 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * **
82411984 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
82412025 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
82412048 TGAGCGAGTC
Statistics
Matches: 118, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.19
40 64 0.54
41 9 0.08
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:82412011 original size:78 final size:80
Alignment explanation
Indices: 82411866--82412047 Score: 201
Period size: 78 Copynumber: 2.3 Consensus size: 80
82411856 TCGAATGATG
* * * *
82411866 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
82411931 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
82411946 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
* ***
82412008 CGTGCAAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
82412025 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
82412048 TGAGCGAGTC
Statistics
Matches: 86, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
77 1 0.01
78 45 0.52
79 29 0.34
80 11 0.13
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:82421696 original size:29 final size:29
Alignment explanation
Indices: 82421663--82421822 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
82421653 GTGACGAGAT
82421663 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
82421692 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
82421721 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
82421750 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
82421779 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
82421808 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
82421823 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:82426715 original size:40 final size:40
Alignment explanation
Indices: 82426670--82426918 Score: 275
Period size: 40 Copynumber: 6.2 Consensus size: 40
82426660 CGGAATACAA
* *
82426670 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* *
82426710 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
82426750 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
82426790 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
82426830 CCGGATGTAGTGCTA-TAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA--ACCACTTGCACAAATGCCTTCGGGTCTTAGC
** * * * *
82426871 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
82426911 CCGGATAT
1 CCGGATAT
82426919 CATTCAATTG
Statistics
Matches: 181, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
39 2 0.01
40 147 0.81
41 30 0.17
42 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:82426901 original size:121 final size:120
Alignment explanation
Indices: 82426670--82426918 Score: 324
Period size: 121 Copynumber: 2.1 Consensus size: 120
82426660 CGGAATACAA
*
82426670 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
* *
82426735 CCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTA-TTAGC
66 CCTTCGGGTCTTAACCCGGATAGAACGACTAGCACAAATGCCTTCGGG-ACTTAGC
* * * *
82426790 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GTGCTATAGCACAA
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACG-ACT-T-GCACAA
* * ** * *
82426853 TTGCCTTCGGGTCTTAACCCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
63 ATGCCTTCGGGTCTTAACCCGGATAGAACGACTAGCACAAATGCCTTCGGGACTTAGC
82426911 CCGGATAT
1 CCGGATAT
82426919 CATTCAATTG
Statistics
Matches: 111, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
118 1 0.01
119 4 0.04
120 45 0.41
121 61 0.55
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (120 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
CCTTCGGGTCTTAACCCGGATAGAACGACTAGCACAAATGCCTTCGGGACTTAGC
Done.