Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 273 of 770
Found at i:82434757 original size:40 final size:40
Alignment explanation
Indices: 82434712--82434959 Score: 298
Period size: 40 Copynumber: 6.2 Consensus size: 40
82434702 CGGAATACAA
* *
82434712 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* *
82434752 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
82434792 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
82434832 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
82434872 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
** * * * *
82434912 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
82434952 CCGGATAT
1 CCGGATAT
82434960 CATTCAATTG
Statistics
Matches: 182, Mismatches: 26, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 182 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:82434936 original size:120 final size:120
Alignment explanation
Indices: 82434712--82434959 Score: 331
Period size: 120 Copynumber: 2.1 Consensus size: 120
82434702 CGGAATACAA
* *
82434712 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
* *
82434777 CCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTA-TTAGC
66 CCTTCGGGTCTTAACCCGGATAGAACGACTAGCACAAATGCCTTCGGG-ACTTAGC
* * * *
82434832 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GTCACTAGCACAAT
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACG--ACTAGCACAAA
* ** * *
82434895 TGCCTTCGGGTCTTAACCCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
64 TGCCTTCGGGTCTTAACCCGGATAGAACGACTAGCACAAATGCCTTCGGGACTTAGC
82434952 CCGGATAT
1 CCGGATAT
82434960 CATTCAATTG
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
118 1 0.01
119 3 0.03
120 107 0.96
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (120 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGGTCTTAACCCGGATAGAACGACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:82444853 original size:20 final size:20
Alignment explanation
Indices: 82444825--82444875 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
82444815 ACAACACATC
* *
82444825 TAAGCCTTTACCAATAGTTT
1 TAAGACTTTACCAATAATTT
82444845 TAAGACTTTACCAATAATTT
1 TAAGACTTTACCAATAATTT
*
82444865 TAAGACCTTAC
1 TAAGACTTTAC
82444876 TAAAATATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (20 bp):
TAAGACTTTACCAATAATTT
Found at i:82445119 original size:40 final size:39
Alignment explanation
Indices: 82445075--82445168 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 39
82445065 TAAGCCTTTA
* *
82445075 CCAAAATATCTAAGGAATTACCAT-TATTTCTAATGATTT
1 CCAAAATATCTAAAGAATTA-CATGTATTTCTAAGGATTT
* *
82445114 GCCAAAATATCTAAAGATTTACATGTATTTTTAAGGATTT
1 -CCAAAATATCTAAAGAATTACATGTATTTCTAAGGATTT
*
82445154 CACAAAATTTCTAAA
1 C-CAAAATATCTAAA
82445169 CCCTTTAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
39 4 0.09
40 43 0.91
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (39 bp):
CCAAAATATCTAAAGAATTACATGTATTTCTAAGGATTT
Found at i:82445132 original size:20 final size:20
Alignment explanation
Indices: 82445071--82445135 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
82445061 TATCTAAGCC
*
82445071 TTTACCAAAATATCTAAGGA
1 TTTACCAAAATATCTAAAGA
* ** * *
82445091 ATTACCATTATTTCTAATGA
1 TTTACCAAAATATCTAAAGA
*
82445111 TTTGCCAAAATATCTAAAGA
1 TTTACCAAAATATCTAAAGA
82445131 TTTAC
1 TTTAC
82445136 ATGTATTTTT
Statistics
Matches: 33, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (20 bp):
TTTACCAAAATATCTAAAGA
Found at i:82445253 original size:20 final size:21
Alignment explanation
Indices: 82445230--82445289 Score: 52
Period size: 22 Copynumber: 2.8 Consensus size: 21
82445220 TTTCTAATCC
82445230 TTTACTAATATTTCTAAA-GA
1 TTTACTAATATTTCTAAAGGA
* *
82445250 TTTATTACCA-ATTTTTTAAAGGA
1 TTTACTA--ATA-TTTCTAAAGGA
*
82445273 TTTACCAATATTTCTAA
1 TTTACTAATATTTCTAA
82445290 CAATTTCATT
Statistics
Matches: 30, Mismatches: 5, Indels: 9
0.68 0.11 0.20
Matches are distributed among these distances:
20 6 0.20
21 8 0.27
22 9 0.30
23 7 0.23
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.47
Consensus pattern (21 bp):
TTTACTAATATTTCTAAAGGA
Found at i:82445510 original size:20 final size:20
Alignment explanation
Indices: 82445481--82445521 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
82445471 AGTAAAAAAA
* *
82445481 TCTAAGGATTTACTATTATT
1 TCTAACGATTTACTAATATT
82445501 TCTAACGATTTACTAATATT
1 TCTAACGATTTACTAATATT
82445521 T
1 T
82445522 ATAAAAGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.49
Consensus pattern (20 bp):
TCTAACGATTTACTAATATT
Found at i:82447057 original size:20 final size:20
Alignment explanation
Indices: 82447034--82447105 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 20
82447024 CTCTATGACG
*
82447034 TTACCAATATTTTTAAAGAT
1 TTACCAATATTTCTAAAGAT
* * *
82447054 TTACCATTATTTCTAATGGT
1 TTACCAATATTTCTAAAGAT
* * * **
82447074 TTACAAAAATATCTAATCAT
1 TTACCAATATTTCTAAAGAT
82447094 TTACCAATATTT
1 TTACCAATATTT
82447106 ATAAGAACTT
Statistics
Matches: 39, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.38, C:0.14, G:0.04, T:0.44
Consensus pattern (20 bp):
TTACCAATATTTCTAAAGAT
Found at i:82447314 original size:20 final size:20
Alignment explanation
Indices: 82447291--82447383 Score: 71
Period size: 20 Copynumber: 4.7 Consensus size: 20
82447281 CATCTAATCC
82447291 TTTACCAATATTTGTAATGA
1 TTTACCAATATTTGTAATGA
* ** *
82447311 TTTACCATTATTTCCAATAA
1 TTTACCAATATTTGTAATGA
* * *
82447331 TTTACTAAAATATGT-ATGGA
1 TTTACCAATATTTGTAAT-GA
* *
82447351 TTTACCAATATTTATGATGA
1 TTTACCAATATTTGTAATGA
* *
82447371 TCTACCAAAATTT
1 TTTACCAATATTT
82447384 CTATGGAATT
Statistics
Matches: 54, Mismatches: 17, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
19 2 0.04
20 50 0.93
21 2 0.04
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.43
Consensus pattern (20 bp):
TTTACCAATATTTGTAATGA
Found at i:82447560 original size:20 final size:19
Alignment explanation
Indices: 82447487--82447570 Score: 62
Period size: 20 Copynumber: 4.2 Consensus size: 19
82447477 ATTTTTTAGA
*
82447487 ATTTTCCAAAATTTCTAAG
1 ATTTACCAAAATTTCTAAG
* *
82447506 TTTTGACCAATATATTT-AAAG
1 ATTT-ACCAA-A-ATTTCTAAG
* **
82447527 ATTTACTATTATTTCTAACG
1 ATTTACCAAAATTTCTAA-G
82447547 ATTTACCAAAATTTCTAATG
1 ATTTACCAAAATTTCTAA-G
82447567 ATTT
1 ATTT
82447571 CATTAATATC
Statistics
Matches: 48, Mismatches: 12, Indels: 9
0.70 0.17 0.13
Matches are distributed among these distances:
18 4 0.08
19 5 0.10
20 28 0.58
21 7 0.15
22 4 0.08
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (19 bp):
ATTTACCAAAATTTCTAAG
Found at i:82447763 original size:10 final size:10
Alignment explanation
Indices: 82447750--82447783 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
82447740 TTTTAAGACG
82447750 ATTTATCAAA
1 ATTTATCAAA
*
82447760 ATTTATAAAA
1 ATTTATCAAA
82447770 ATTTATCAATA
1 ATTTATCAA-A
82447781 ATT
1 ATT
82447784 CAAAAGTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 17 0.81
11 4 0.19
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (10 bp):
ATTTATCAAA
Found at i:82448307 original size:13 final size:13
Alignment explanation
Indices: 82448289--82448313 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82448279 CTTCGTGCAT
82448289 TTTTTTATTTTTA
1 TTTTTTATTTTTA
82448302 TTTTTTATTTTT
1 TTTTTTATTTTT
82448314 GGGCTTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:82448624 original size:13 final size:13
Alignment explanation
Indices: 82448606--82448633 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
82448596 TTAAATATGT
82448606 TTTGGCTGTACGA
1 TTTGGCTGTACGA
82448619 TTTGGCTGTACGA
1 TTTGGCTGTACGA
82448632 TT
1 TT
82448634 GAGGGTTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.29, T:0.43
Consensus pattern (13 bp):
TTTGGCTGTACGA
Found at i:82449079 original size:17 final size:16
Alignment explanation
Indices: 82449057--82449090 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
82449047 TTTGTCTTTT
82449057 TAAAAAAAATATAAAAA
1 TAAAAAAAATA-AAAAA
*
82449074 TAAAAAATATAAAAAA
1 TAAAAAAAATAAAAAA
82449090 T
1 T
82449091 TTCAGAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
TAAAAAAAATAAAAAA
Found at i:82449080 original size:15 final size:15
Alignment explanation
Indices: 82449060--82449088 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
82449050 GTCTTTTTAA
82449060 AAAAAATATAAAAAT
1 AAAAAATATAAAAAT
82449075 AAAAAATATAAAAA
1 AAAAAATATAAAAA
82449089 ATTTCAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (15 bp):
AAAAAATATAAAAAT
Found at i:82451143 original size:11 final size:11
Alignment explanation
Indices: 82451104--82451171 Score: 77
Period size: 11 Copynumber: 6.3 Consensus size: 11
82451094 CCTTAAAAAA
82451104 TCTATCAAATT
1 TCTATCAAATT
*
82451115 TC-ATTGAAATT
1 TCTA-TCAAATT
* *
82451126 T-TCTCAAACT
1 TCTATCAAATT
82451136 TCTATCAAATT
1 TCTATCAAATT
*
82451147 TCTATCAAAAT
1 TCTATCAAATT
82451158 TCTATCAAATT
1 TCTATCAAATT
82451169 TCT
1 TCT
82451172 TTGTTTAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
10 7 0.15
11 39 0.85
ACGTcount: A:0.35, C:0.19, G:0.01, T:0.44
Consensus pattern (11 bp):
TCTATCAAATT
Found at i:82451368 original size:48 final size:46
Alignment explanation
Indices: 82451304--82451438 Score: 155
Period size: 48 Copynumber: 2.8 Consensus size: 46
82451294 AGTGATAATT
*
82451304 TTAAATTTTCAATACTATTCGATATTTTTTTAATTTATGCAAATT-TAA
1 TTAAA-TTTCAATACTATT-GATATTTTTTTCATTTATGC-AATTATAA
* *
82451352 TTAAATTTGCAATACTATTTGATATATTATTCATTTATGCAATTATAA
1 TTAAATTT-CAATACTA-TTGATATTTTTTTCATTTATGCAATTATAA
* *
82451400 TTAAAATTTCAATACTGCTTGATTTTTTTTTCATTTATG
1 TT-AAATTTCAATACT-ATTGATATTTTTTTCATTTATG
82451439 ATGTTTGCAT
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
47 7 0.09
48 60 0.80
49 8 0.11
ACGTcount: A:0.33, C:0.09, G:0.06, T:0.52
Consensus pattern (46 bp):
TTAAATTTCAATACTATTGATATTTTTTTCATTTATGCAATTATAA
Found at i:82453049 original size:18 final size:18
Alignment explanation
Indices: 82453026--82453068 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
82453016 ATGCTAGAGC
*
82453026 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
82453044 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
82453062 GTTTCCT
1 GTATCCT
82453069 TTTCCTAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:82453496 original size:21 final size:20
Alignment explanation
Indices: 82453464--82453502 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
82453454 TTTTATATTG
82453464 TTTCATTTAATAAAATAAAA
1 TTTCATTTAATAAAATAAAA
* *
82453484 TTTCTTTTGAATAAGATAA
1 TTTCATTT-AATAAAATAA
82453503 TTGTAATACA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (20 bp):
TTTCATTTAATAAAATAAAA
Found at i:82456783 original size:125 final size:126
Alignment explanation
Indices: 82456558--82456937 Score: 548
Period size: 125 Copynumber: 3.0 Consensus size: 126
82456548 TTATAGCCTC
* * * *
82456558 ATTTTTCTACGAACTACTGTATCAAAAGAGCGTCCACGTGAGG-GCTTTTTTTAGAAATTTTGCT
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCATGT-AGGAGATTTTTTCAGAAATTTTGCT
* *
82456622 GACAGTGCATCCTGCTTGAAGTATTTTCGACTCTATTTGTTCAGAAACGTCTACTCAGAATT
65 GACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* *
82456684 ATTTTTCTACGAACTACTGTAGCAAAAGAGTGTCCATGTAGGAG-TTTTTTCAGAAATTTTACTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCATGTAGGAGATTTTTTCAGAAATTTTGCTG
* * * *
82456748 ACAGTGCATCCTACTTGAAGCGTTTTCAACACTATTTGTTCATAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * * * *
82456809 ATTTTTCTACGAACTATTGTAGCAAAAGAGCGTCCATTTGGGAGATTTTTTCAAAAATTTTGCTA
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCATGTAGGAGATTTTTTCAGAAATTTTGCTG
* * * *
82456874 ACAATGCATCTTGCTTGAAGCTTTTTCGACACTATTTGTTCAGAAACGTCTACTCAAAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
82456935 ATT
1 ATT
82456938 CTTACAGAAA
Statistics
Matches: 227, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
125 116 0.51
126 111 0.49
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCATGTAGGAGATTTTTTCAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:82457505 original size:19 final size:19
Alignment explanation
Indices: 82457483--82457571 Score: 121
Period size: 19 Copynumber: 4.8 Consensus size: 19
82457473 ACGATTATGT
82457483 ATCAATTAACCCTAAATTA
1 ATCAATTAACCCTAAATTA
82457502 ATCAATTAACCCTAAATTTA
1 ATCAATTAACCCTAAA-TTA
*
82457522 ATCAATTAACCCTAATTTA
1 ATCAATTAACCCTAAATTA
* *
82457541 ATCAA-T--CTCTAATTTA
1 ATCAATTAACCCTAAATTA
82457557 ATCAATTAACCCTAA
1 ATCAATTAACCCTAA
82457572 TACCTTAAAC
Statistics
Matches: 63, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
16 14 0.22
17 1 0.02
18 1 0.02
19 29 0.46
20 18 0.29
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35
Consensus pattern (19 bp):
ATCAATTAACCCTAAATTA
Found at i:82457562 original size:35 final size:38
Alignment explanation
Indices: 82457483--82457572 Score: 132
Period size: 39 Copynumber: 2.4 Consensus size: 38
82457473 ACGATTATGT
*
82457483 ATCAATTAACCCTAAATTAATCAATTAACCCTAAATTTA
1 ATCAATTAACCCTAATTTAATCAATT-ACCCTAAATTTA
*
82457522 ATCAATTAACCCTAATTTAATCAA-T-CTCT-AATTTA
1 ATCAATTAACCCTAATTTAATCAATTACCCTAAATTTA
82457557 ATCAATTAACCCTAAT
1 ATCAATTAACCCTAAT
82457573 ACCTTAAACT
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
35 22 0.45
36 3 0.06
38 1 0.02
39 23 0.47
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (38 bp):
ATCAATTAACCCTAATTTAATCAATTACCCTAAATTTA
Found at i:82457590 original size:34 final size:34
Alignment explanation
Indices: 82457483--82457592 Score: 114
Period size: 35 Copynumber: 3.1 Consensus size: 34
82457473 ACGATTATGT
*
82457483 ATCAATTAACCCTAAATTAATCAATTAACCCTAAATTTA
1 ATCAATTAACCCT-AATTAATC-A--AACTCT-AATTTA
*
82457522 ATCAATTAACCCTAATTTAATCAATCTCTAATTTA
1 ATCAATTAACCCTAA-TTAATCAAACTCTAATTTA
* *
82457557 ATCAATTAACCCTAA-TACCTTAAACTCTAATTTA
1 ATCAATTAACCCTAATTA-ATCAAACTCTAATTTA
82457591 AT
1 AT
82457593 ATTTAGTATT
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
33 2 0.03
34 15 0.23
35 21 0.33
36 4 0.06
38 3 0.05
39 19 0.30
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (34 bp):
ATCAATTAACCCTAATTAATCAAACTCTAATTTA
Found at i:82458295 original size:31 final size:31
Alignment explanation
Indices: 82458231--82458298 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 31
82458221 TTTTTTTAAC
*
82458231 TAAATTTAGCCATTAACTTTTAAAATAAGGT
1 TAAATTTAGCCATTAACTTTAAAAATAAGGT
82458262 TAAATTT-GACCATTAACCTTTCAAAAAT-A-GT
1 TAAATTTAG-CCATTAA-CTTT-AAAAATAAGGT
82458293 TAAATT
1 TAAATT
82458299 ATTATTTTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
30 1 0.03
31 22 0.67
32 5 0.15
33 5 0.15
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.38
Consensus pattern (31 bp):
TAAATTTAGCCATTAACTTTAAAAATAAGGT
Found at i:82459121 original size:25 final size:26
Alignment explanation
Indices: 82459086--82459136 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
82459076 TCAAAAGTAA
82459086 AAAAAATATATTTTAGTATAATAAAT
1 AAAAAATATATTTTAGTATAATAAAT
82459112 AAAAAA-ATATTTTAGTATAATAAAT
1 AAAAAATATATTTTAGTATAATAAAT
82459137 TTGAATCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (26 bp):
AAAAAATATATTTTAGTATAATAAAT
Found at i:82460584 original size:19 final size:19
Alignment explanation
Indices: 82460542--82460585 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
82460532 AAAATAATAT
*
82460542 TTATTATTTAAATTATTAA
1 TTATCATTTAAATTATTAA
*
82460561 ATATCATTTAAA-TATTAA
1 TTATCATTTAAATTATTAA
82460579 CTTATCA
1 -TTATCA
82460586 ATTCAAGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (19 bp):
TTATCATTTAAATTATTAA
Found at i:82461009 original size:44 final size:44
Alignment explanation
Indices: 82460959--82461047 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
82460949 AATTGTAAAA
* * *
82460959 TAAATTATAATTATTTTTAAATGTGCCATTATCACAACTTCTAT
1 TAAATTATAAATATTTTTAAATGTACAATTATCACAACTTCTAT
*
82461003 TAAATTATAAATATTTTTAAATGTATAATTATCACAACTTCTAT
1 TAAATTATAAATATTTTTAAATGTACAATTATCACAACTTCTAT
82461047 T
1 T
82461048 TTGGTTTCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.46
Consensus pattern (44 bp):
TAAATTATAAATATTTTTAAATGTACAATTATCACAACTTCTAT
Found at i:82461783 original size:19 final size:21
Alignment explanation
Indices: 82461745--82461784 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
82461735 AAGACTTCCA
*
82461745 AACATCTTAGAAAATGTTTTG
1 AACATCTTAGAAAATATTTTG
82461766 AACA-CTTA-AAAATATTTTG
1 AACATCTTAGAAAATATTTTG
82461785 GACAGTTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 4 0.22
21 4 0.22
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (21 bp):
AACATCTTAGAAAATATTTTG
Found at i:82468416 original size:14 final size:14
Alignment explanation
Indices: 82468397--82468423 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
82468387 TACATTGCAT
82468397 TTATTTCATGTATA
1 TTATTTCATGTATA
82468411 TTATTTCATGTAT
1 TTATTTCATGTAT
82468424 TGAGTCTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATTTCATGTATA
Found at i:82471350 original size:93 final size:93
Alignment explanation
Indices: 82471186--82471369 Score: 221
Period size: 93 Copynumber: 2.0 Consensus size: 93
82471176 TGATGAATCC
* *
82471186 GGTGAGGTTGTGGTTGCTATTAATTCTTTTCTCATGAATACTATTCATATATCACTTTGAAAAAA
1 GGTGAGGCTATGGTTGCTATTAATTCTTTTCTCATGAATACTATTCA-ATATCACTTTGAAAAAA
*
82471251 TATGGTGTA-TTTTGAAACTTCCTCCGGT
65 TATGGTGCATTTTTGAAACTTCCTCCGGT
* * * * *
82471279 GGTGAGGCTATGGTTGCTATTAATTCTTTTTTCATGAATACTCCTATTC-GTCTCACTTTGGAGA
1 GGTGAGGCTATGGTTGCTATTAATTCTTTTCTCATGAATA---CTATTCAATATCACTTTGAAAA
* *
82471343 ACT-TGGTGCATTTTTTAAACTTCCTCC
63 AATATGGTGCATTTTTGAAACTTCCTCC
82471370 CGACGGTGAG
Statistics
Matches: 77, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
93 43 0.56
94 28 0.36
96 6 0.08
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (93 bp):
GGTGAGGCTATGGTTGCTATTAATTCTTTTCTCATGAATACTATTCAATATCACTTTGAAAAAAT
ATGGTGCATTTTTGAAACTTCCTCCGGT
Found at i:82473964 original size:2 final size:2
Alignment explanation
Indices: 82473957--82474017 Score: 70
Period size: 2 Copynumber: 31.0 Consensus size: 2
82473947 CTCAAACTTT
*
82473957 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
82473998 GA TA AA GA TA TA TA GA TA TA
1 TA TA TA TA TA TA TA TA TA TA
82474018 ATCATGAATA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.43
Consensus pattern (2 bp):
TA
Found at i:82484178 original size:12 final size:12
Alignment explanation
Indices: 82484161--82484187 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
82484151 AAAATTAATG
82484161 TTATATTAGAAA
1 TTATATTAGAAA
82484173 TTATATTAGAAA
1 TTATATTAGAAA
82484185 TTA
1 TTA
82484188 CATGTGAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (12 bp):
TTATATTAGAAA
Found at i:82487687 original size:23 final size:24
Alignment explanation
Indices: 82487584--82487686 Score: 158
Period size: 23 Copynumber: 4.4 Consensus size: 24
82487574 CTGGAGGCCT
*
82487584 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
82487609 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
82487632 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
82487655 AGCCCTTTTGATAA-TGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
82487678 AGCCCTTTT
1 AGCCCTTTT
82487687 GCACTTCCTC
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
23 63 0.84
24 8 0.11
25 4 0.05
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:82487757 original size:9 final size:9
Alignment explanation
Indices: 82487743--82487799 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
82487733 ATCTCGTGTG
82487743 CATATCATA
1 CATATCATA
*
82487752 CATATCATGTG
1 CATATCA--TA
82487763 CATATCATA
1 CATATCATA
* *
82487772 CATGTCATGTG
1 CATATCA--TA
82487783 CATATCATA
1 CATATCATA
82487792 CATATCAT
1 CATATCAT
82487800 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:82487762 original size:20 final size:20
Alignment explanation
Indices: 82487739--82487801 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
82487729 GAACATCTCG
82487739 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
82487759 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
82487779 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
82487799 TGT
1 TGT
82487802 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:82487866 original size:25 final size:25
Alignment explanation
Indices: 82487838--82487885 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82487828 ATATATAAAC
* * *
82487838 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
82487863 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
82487886 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:82495725 original size:47 final size:47
Alignment explanation
Indices: 82495656--82495752 Score: 158
Period size: 47 Copynumber: 2.1 Consensus size: 47
82495646 CCTAGCCTCT
82495656 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
* * * *
82495703 TTTAATAACTTGGGCATAAGCCCTTTTGATAACTGGGGTATAAGCCC
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
82495750 TTT
1 TTT
82495753 TGCACTTCCT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31
Consensus pattern (47 bp):
TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:82495754 original size:24 final size:24
Alignment explanation
Indices: 82495649--82495753 Score: 158
Period size: 24 Copynumber: 4.4 Consensus size: 24
82495639 CTGGAGGCCT
*
82495649 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
82495674 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
82495698 AGCCC-TTTAATAACTTGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
82495721 AGCCCTTTTGATAACTGGGGTATA
1 AGCCCTTTTAATAACTGGGGCATA
82495745 AGCCCTTTT
1 AGCCCTTTT
82495754 GCACTTCCTC
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
23 22 0.30
24 48 0.65
25 4 0.05
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:82495824 original size:9 final size:9
Alignment explanation
Indices: 82495810--82495866 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
82495800 ATCTCGTGTG
82495810 CATATCATA
1 CATATCATA
*
82495819 CATATCATGTG
1 CATATCA--TA
82495830 CATATCATA
1 CATATCATA
* *
82495839 CATGTCATGTG
1 CATATCA--TA
82495850 CATATCATA
1 CATATCATA
82495859 CATATCAT
1 CATATCAT
82495867 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:82495829 original size:20 final size:20
Alignment explanation
Indices: 82495806--82495868 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
82495796 GAACATCTCG
82495806 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
82495826 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
82495846 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
82495866 TGT
1 TGT
82495869 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:82495933 original size:25 final size:25
Alignment explanation
Indices: 82495905--82495952 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82495895 ATATATAAAC
* * *
82495905 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
82495930 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
82495953 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:82503722 original size:27 final size:27
Alignment explanation
Indices: 82503682--82503840 Score: 173
Period size: 27 Copynumber: 5.9 Consensus size: 27
82503672 AGGAAGCGTC
*
82503682 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
82503709 TTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
82503735 CCTGGTGGCTATGCCACAATTATTTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* * *
82503763 CTGGTGGCTCTACCACAAATATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
82503790 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
82503817 CTGGTGACTTTGTCACAA-TATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
82503841 GCAACCTCGC
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
26 9 0.08
27 100 0.89
28 3 0.03
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:82503768 original size:54 final size:53
Alignment explanation
Indices: 82503679--82503840 Score: 218
Period size: 54 Copynumber: 3.0 Consensus size: 53
82503669 TGGAGGAAGC
*
82503679 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACA-ATATCT
* *
82503733 GTCCTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTACCACAAATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCAC-AATATCT
* * * * *
82503787 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTGACTTTGTCACAATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACAATATCT
82503840 G
1 G
82503841 GCAACCTCGC
Statistics
Matches: 96, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
53 13 0.14
54 82 0.85
55 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (53 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAATATCT
Found at i:82503834 original size:81 final size:81
Alignment explanation
Indices: 82503682--82503835 Score: 213
Period size: 81 Copynumber: 1.9 Consensus size: 81
82503672 AGGAAGCGTC
* * *
82503682 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATACCACAAATATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
82503747 GCCACAATTATTTGAT
66 GCCACAATTATTTGAT
* *
82503763 CTGGTGGCTCTACCACAAATATCTG-TTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATACCACAAATATCTGATT-TGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
* *
82503826 TTGTCACAAT
64 ATGCCACAAT
82503836 ATCTGGCAAC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
80 10 0.16
81 54 0.84
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (81 bp):
CTGGTGGCTATACCACAAATATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATTATTTGAT
Found at i:82506857 original size:39 final size:39
Alignment explanation
Indices: 82506785--82506947 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
82506775 TATGGTAACC
* *
82506785 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
82506825 CGCGCAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
82506864 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
82506903 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
82506942 CGCACA
1 CGCACA
82506948 TTCATACACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 96 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:82513792 original size:24 final size:22
Alignment explanation
Indices: 82513765--82513811 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
82513755 GAACTTTAAT
*
82513765 ATCTCTTGGTATACTGTTCATATG
1 ATCTCTTCGT-TACT-TTCATATG
*
82513789 ATCTTTTCGTTACTTTCATATG
1 ATCTCTTCGTTACTTTCATATG
82513811 A
1 A
82513812 AAATAGACTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
23 4 0.19
24 8 0.38
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (22 bp):
ATCTCTTCGTTACTTTCATATG
Found at i:82514769 original size:39 final size:39
Alignment explanation
Indices: 82514697--82514859 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
82514687 TATGGTAACC
* *
82514697 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
82514737 CGCGCAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
82514776 CGCACCATTGCCTTCGGGCTTAGCCCGTATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
82514815 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
82514854 CGCACA
1 CGCACA
82514860 TTCATACACA
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 94 0.85
40 16 0.15
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:82516660 original size:28 final size:29
Alignment explanation
Indices: 82516593--82516664 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
82516583 ATAGTGAATC
*
82516593 CGCACACTTAGTGCTATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATTCAACT
82516622 CGCACACTTAGTGCTATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATATATTC-AACT
82516650 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82516665 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATATTCAACT
Found at i:82516686 original size:30 final size:28
Alignment explanation
Indices: 82516592--82516693 Score: 89
Period size: 28 Copynumber: 3.5 Consensus size: 28
82516582 TATAGTGAAT
* *
82516592 CCGCACACTTAGTGCTATATATATTC-AGC
1 CCGCACACTTAGTGCTATACA-A-TCAAAC
* *
82516621 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * *
82516649 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATACAA--TCAAAC
*
82516679 CCGCACACTCAGTGC
1 CCGCACACTTAGTGC
82516694 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 20 0.32
30 18 0.29
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:82524653 original size:28 final size:29
Alignment explanation
Indices: 82524586--82524657 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
82524576 ATAGTGAATC
*
82524586 CGCACACTTAGTGCTATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATTCAACT
82524615 CGCACACTTAGTGCTATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATATATTC-AACT
82524643 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82524658 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATATTCAACT
Found at i:82524679 original size:30 final size:28
Alignment explanation
Indices: 82524585--82524686 Score: 89
Period size: 28 Copynumber: 3.5 Consensus size: 28
82524575 TATAGTGAAT
* *
82524585 CCGCACACTTAGTGCTATATATATTC-AGC
1 CCGCACACTTAGTGCTATACA-A-TCAAAC
* *
82524614 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * *
82524642 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATACAA--TCAAAC
*
82524672 CCGCACACTCAGTGC
1 CCGCACACTTAGTGC
82524687 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 20 0.32
30 18 0.29
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:82526010 original size:25 final size:23
Alignment explanation
Indices: 82525975--82526022 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
82525965 ATCCACACTC
82525975 TTTTTTTTTTCATCATTTTCCTT
1 TTTTTTTTTTCATCATTTTCCTT
* *
82525998 TTTTTTTCATTTCTTTATTTTCCTT
1 TTTTTTT--TTTCATCATTTTCCTT
82526023 CCATAATGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
25 14 0.67
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTTTTTTCATCATTTTCCTT
Found at i:82539462 original size:47 final size:48
Alignment explanation
Indices: 82539338--82539463 Score: 147
Period size: 46 Copynumber: 2.7 Consensus size: 48
82539328 AGGATGTTTG
*
82539338 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
82539387 -G--TCCGAGCTCGTTGAGTTGAGTCCGAGTTCA-TGA-GATG-TAACT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
*
82539430 AGGCATCCGAACTCGTTGAGTTGAGTCTGAGTTC
1 -GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
82539464 GCTCATGGAT
Statistics
Matches: 67, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.43
47 27 0.40
48 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (48 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:82542478 original size:15 final size:15
Alignment explanation
Indices: 82542458--82542525 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
82542448 ATATCTTGGG
82542458 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
82542473 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
*
82542488 -TTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
82542502 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
82542517 TTTCTTTAT
1 TTTCTTTAT
82542526 TCAGTTTCTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
14 13 0.29
15 32 0.71
ACGTcount: A:0.13, C:0.18, G:0.12, T:0.57
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:82542501 original size:29 final size:30
Alignment explanation
Indices: 82542449--82542527 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 30
82542439 CATAGTATCA
* * *
82542449 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
*
82542479 TAT-TCTGGA-TTCTTTATTCTGGATTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
82542508 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
82542528 AGTTTCTTGT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
29 25 0.60
30 17 0.40
ACGTcount: A:0.13, C:0.18, G:0.14, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:82545024 original size:47 final size:48
Alignment explanation
Indices: 82544907--82545033 Score: 140
Period size: 46 Copynumber: 2.7 Consensus size: 48
82544897 AGGATGTTTG
* *
82544907 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAAT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTGA-GGATGCGAAT
* *
82544956 -G--TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTGAGGATGCGAA-T
*
82544999 AGGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCA
1 -GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
82545034 CTCATGGATA
Statistics
Matches: 66, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.08
45 4 0.06
46 27 0.41
47 27 0.41
48 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (48 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTGAGGATGCGAAT
Found at i:82548678 original size:52 final size:52
Alignment explanation
Indices: 82548618--82548720 Score: 206
Period size: 52 Copynumber: 2.0 Consensus size: 52
82548608 TATATGTGTG
82548618 ATCCTTGTATAGTATCTGCATGAGTTTAAGTGTGTGCTGTGTTGTATGCATT
1 ATCCTTGTATAGTATCTGCATGAGTTTAAGTGTGTGCTGTGTTGTATGCATT
82548670 ATCCTTGTATAGTATCTGCATGAGTTTAAGTGTGTGCTGTGTTGTATGCAT
1 ATCCTTGTATAGTATCTGCATGAGTTTAAGTGTGTGCTGTGTTGTATGCAT
82548721 AAGTAAATGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.19, C:0.12, G:0.25, T:0.44
Consensus pattern (52 bp):
ATCCTTGTATAGTATCTGCATGAGTTTAAGTGTGTGCTGTGTTGTATGCATT
Found at i:82549661 original size:11 final size:11
Alignment explanation
Indices: 82549645--82549688 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
82549635 TAATTAACTG
*
82549645 CACCACTACCA
1 CACCACCACCA
*
82549656 CACCACCACCT
1 CACCACCACCA
**
82549667 CACCACCACTG
1 CACCACCACCA
82549678 CACCACCACCA
1 CACCACCACCA
82549689 TGATTAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.32, C:0.59, G:0.02, T:0.07
Consensus pattern (11 bp):
CACCACCACCA
Found at i:82549670 original size:22 final size:22
Alignment explanation
Indices: 82549645--82549687 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
82549635 TAATTAACTG
*
82549645 CACCACTACCACACCACCACCT
1 CACCACCACCACACCACCACCT
**
82549667 CACCACCACTGCACCACCACC
1 CACCACCACCACACCACCACC
82549688 ATGATTAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.60, G:0.02, T:0.07
Consensus pattern (22 bp):
CACCACCACCACACCACCACCT
Found at i:82551645 original size:39 final size:39
Alignment explanation
Indices: 82551569--82551712 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
82551559 CCGCACAAAG
*
82551569 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * **
82551609 GCCTTCGGGCTTAGCCCGGATATCATAACTCACACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
*
82551648 GCCTTCGGGCTTAGCCCGGGTATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
82551687 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
82551713 TCGAACATTC
Statistics
Matches: 93, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 84 0.90
40 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:82559404 original size:38 final size:39
Alignment explanation
Indices: 82559290--82559432 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
82559280 CCGCACAAAG
*
82559290 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * **
82559330 GCCTTCGGGCTTAGCCCGGATATCATAACTCACACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
82559369 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
82559407 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
82559433 TCGAACATTC
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
38 34 0.37
39 50 0.54
40 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:82561489 original size:28 final size:28
Alignment explanation
Indices: 82561424--82561520 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
82561414 GACAAGATTG
* * *
82561424 GCACTAAGTGTGCGGGTTT--TTGTACA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
82561450 GCACTAAGTGTGCGAGTTTGATTCTATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
82561478 GCACTAAGTGTGCGAG-CTGAAAATATATA
1 GCACTAAGTGTGCGAGTTTG--ATTATATA
82561507 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82561521 GATTCACTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
26 18 0.30
27 2 0.03
28 21 0.34
29 20 0.33
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:82561516 original size:29 final size:28
Alignment explanation
Indices: 82561449--82561520 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
82561439 GTTTTTGTAC
* * *
82561449 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
82561477 AGCACTAAGTGTGCGAG-CTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG--AATATAT
82561506 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
82561521 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:82561532 original size:29 final size:28
Alignment explanation
Indices: 82561424--82561524 Score: 75
Period size: 29 Copynumber: 3.6 Consensus size: 28
82561414 GACAAGATTG
* * * *
82561424 GCACTAAGTGTGCGGGTT--TTTGTACA
1 GCACTAAGTGTGCGGATTGATATATATA
* *
82561450 GCACTAAGTGTGCGAGTTTGAT-TCTATA
1 GCACTAAGTGTGCG-GATTGATATATATA
* *
82561478 GCACTAAGTGTGC-GAGCTGAAAATATATA
1 GCACTAAGTGTGCGGA-TTG-ATATATATA
82561507 GCACTAAGTGTGCGGATT
1 GCACTAAGTGTGCGGATT
82561525 CACTATATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
26 15 0.25
27 5 0.08
28 18 0.30
29 20 0.33
30 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGGATTGATATATATA
Found at i:82565029 original size:28 final size:29
Alignment explanation
Indices: 82564937--82565035 Score: 161
Period size: 28 Copynumber: 3.5 Consensus size: 29
82564927 TACAGTAAGT
82564937 TCGCACACTTAGTGCT-TA-ATATTCAAAC
1 TCGCACACTTAGTGCTATACA-ATTCAAAC
82564965 -CGCACACTTAGTGCTATACAATTCAAAC
1 TCGCACACTTAGTGCTATACAATTCAAAC
82564993 TCGCACACTTAGTGCTATACAATT-AAAC
1 TCGCACACTTAGTGCTATACAATTCAAAC
82565021 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
82565036 CAATCTCATT
Statistics
Matches: 68, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
27 15 0.22
28 29 0.43
29 24 0.35
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
TCGCACACTTAGTGCTATACAATTCAAAC
Found at i:82570697 original size:17 final size:17
Alignment explanation
Indices: 82570675--82570711 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
82570665 AAAGTGTGTA
82570675 CTTCTACCCTATGATAG
1 CTTCTACCCTATGATAG
82570692 CTTCTACCCTATGATAG
1 CTTCTACCCTATGATAG
82570709 CTT
1 CTT
82570712 GATATAAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.22, C:0.30, G:0.11, T:0.38
Consensus pattern (17 bp):
CTTCTACCCTATGATAG
Found at i:82572433 original size:29 final size:27
Alignment explanation
Indices: 82572333--82572433 Score: 107
Period size: 28 Copynumber: 3.6 Consensus size: 27
82572323 GTATAATAAG
82572333 CCCGCACACTTAGTGCT-TAATAGTCG-A
1 CCCGCACACTTAGTGCTATAA-A-TCGAA
*
82572360 CCTCGCACACTTAGTGCTATATAATCAAA
1 CC-CGCACACTTAGTGCTATA-AATCGAA
* *
82572389 CTCGCACACTTAGTGCTATACAATTTGAA
1 CCCGCACACTTAGTGCTATA-AA-TCGAA
82572418 CCCGCACACTTAGTGC
1 CCCGCACACTTAGTGC
82572434 CAATTCATGA
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
27 2 0.03
28 37 0.59
29 23 0.37
30 1 0.02
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.27
Consensus pattern (27 bp):
CCCGCACACTTAGTGCTATAAATCGAA
Found at i:82573979 original size:28 final size:29
Alignment explanation
Indices: 82573947--82574027 Score: 119
Period size: 29 Copynumber: 2.8 Consensus size: 29
82573937 TATATATTTT
82573947 TTTGGGCCTAAT-GGCCATATGAATGTGA
1 TTTGGGCCTAATAGGCCATATGAATGTGA
* *
82573975 TTTGGGCCTAATGGGCCATATAAATGTGA
1 TTTGGGCCTAATAGGCCATATGAATGTGA
* *
82574004 TTTGGGCCTCATAAGCCATATGAA
1 TTTGGGCCTAATAGGCCATATGAA
82574028 AGATATTGGG
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 12 0.26
29 35 0.74
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (29 bp):
TTTGGGCCTAATAGGCCATATGAATGTGA
Found at i:82578244 original size:37 final size:37
Alignment explanation
Indices: 82578186--82578286 Score: 157
Period size: 37 Copynumber: 2.7 Consensus size: 37
82578176 CGAATAGTCC
* *
82578186 CCACACGTAGTTATCGAGTCTTACCCGGACAAAATAT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATAT
* * *
82578223 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATAT
82578260 CCACACGTAGTCATCGGGTCTTACCCG
1 CCACACGTAGTCATCGGGTCTTACCCG
82578287 AAATATATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATAT
Found at i:82578487 original size:48 final size:48
Alignment explanation
Indices: 82578429--82578708 Score: 524
Period size: 48 Copynumber: 5.8 Consensus size: 48
82578419 ATATACACAC
*
82578429 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
82578477 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
82578525 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
82578573 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
82578621 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
82578669 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
82578709 GCACATATAT
Statistics
Matches: 226, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 226 1.00
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:82582215 original size:40 final size:40
Alignment explanation
Indices: 82582145--82582383 Score: 372
Period size: 40 Copynumber: 6.0 Consensus size: 40
82582135 AAATGCACAT
* * *
82582145 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
82582185 CACTAGAACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
82582225 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGCATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
82582265 CATCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
82582305 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACT-TAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGA-TATAA
* *
82582345 CACCAGCACGAATGCTCTTTGGGACTTAGCCCGGCTATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
82582384 TAACTCTCAA
Statistics
Matches: 182, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 181 0.99
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:82584064 original size:39 final size:39
Alignment explanation
Indices: 82583950--82584134 Score: 169
Period size: 40 Copynumber: 4.6 Consensus size: 39
82583940 ACGACTCACT
**
82583950 CAAATGCCTTCGGGACAAAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
* *
82583990 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGTTTAGTAACTCGCA
* * *
82584030 CAAATGCCTTAGGG-CTTAGCCCGGATTTATTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
* * * * * *
82584069 CGAATGCCTT-TGGATTCTTAGTCTGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA--CTTAGCCCGG-TTTAGTAAC-TCGCA
82584111 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
82584135 ACATCATTCA
Statistics
Matches: 117, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
38 4 0.03
39 28 0.24
40 51 0.44
41 25 0.21
42 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:82592019 original size:40 final size:39
Alignment explanation
Indices: 82591973--82592155 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
82591963 GACTCACTCA
*
82591973 AATGCCTTCGGGACAAAGCCCGGTTATAGTAACTCGCACG
1 AATGCCTTCGGGACTAAGCCCGGTT-TAGTAACTCGCACG
*
82592013 AATGCCTTCGGGACTTAA-CCCGGGTTTAGTAACTCGCACA
1 AATGCCTTCGGGAC-TAAGCCC-GGTTTAGTAACTCGCACG
* *
82592053 AATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTAAGCCCGG-TTTAGTAACTCGCACG
* * * *
82592092 AATGCCTTC-GGATTCTTAGTCCGGATTTAGTCACTTAGCAC-
1 AATGCCTTCGGGA--CTAAGCCCGG-TTTAGTAAC-TCGCACG
* *
82592133 AAAGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTAAGCCCGG
82592156 ACATCATTCA
Statistics
Matches: 123, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
38 6 0.05
39 27 0.22
40 51 0.41
41 31 0.25
42 8 0.07
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTAAGCCCGGTTTAGTAACTCGCACG
Found at i:82592072 original size:79 final size:81
Alignment explanation
Indices: 82591971--82592156 Score: 238
Period size: 80 Copynumber: 2.3 Consensus size: 81
82591961 ACGACTCACT
**
82591971 CAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCTTAACCC
* *
82592034 GGGTTTAGTAAC-TCGCA
64 GGATTTAGTAACTTAGCA
* **
82592051 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATTCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGA-TCTTAACCCG
*
82592115 GATTTAGTCACTTAGCA
65 GATTTAGTAACTTAGCA
82592132 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82592157 CATCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
78 3 0.03
79 30 0.32
80 41 0.44
81 19 0.20
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCTTAACCCGG
ATTTAGTAACTTAGCA
Found at i:82594756 original size:46 final size:46
Alignment explanation
Indices: 82594689--82594862 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
82594679 TGTAACCCGC
82594689 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
82594735 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * *
82594785 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
82594828 CCATAAGTGAACTCGGA-TCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
82594863 ATGCCCAAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 20 0.18
46 44 0.40
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:82594808 original size:93 final size:92
Alignment explanation
Indices: 82594696--82594867 Score: 299
Period size: 93 Copynumber: 1.9 Consensus size: 92
82594686 CGCCCATAAG
* *
82594696 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGA-TCAACTCA
82594761 ACGAGCTCGGATGCCTAGTTACATCTCA
65 ACGAGCTCGGATGCCTAGTTACATCTCA
*
82594789 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGATCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGATCAACTCAA
*
82594854 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
82594868 CAAATATCCG
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 22 0.29
93 53 0.71
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGATCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCA
Found at i:82597775 original size:37 final size:37
Alignment explanation
Indices: 82597725--82597830 Score: 185
Period size: 37 Copynumber: 2.9 Consensus size: 37
82597715 GCTTGAATAG
*
82597725 TCTCCACACGTAGTTATCGGGTCTTACCCGGACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* *
82597762 TCTCCACACGTAGTCATCGGGTCTTACCCAGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
82597799 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
82597831 ATATATTTCC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (37 bp):
TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
Found at i:82598029 original size:48 final size:48
Alignment explanation
Indices: 82597971--82598248 Score: 506
Period size: 48 Copynumber: 5.8 Consensus size: 48
82597961 ATATACACAC
*
82597971 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
82598019 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
82598067 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCAC--ATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
82598113 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
82598161 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
82598209 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
82598249 GCACATATAT
Statistics
Matches: 222, Mismatches: 6, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
46 45 0.20
48 177 0.80
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:82598134 original size:94 final size:95
Alignment explanation
Indices: 82597971--82598248 Score: 495
Period size: 94 Copynumber: 2.9 Consensus size: 95
82597961 ATATACACAC
*
82597971 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA-ATACATATCTCATACATATTTCA
82598036 CACTAGCCATTCGGCTTTACCACATATACAT
65 CACTAGCCATTCGGCTTTACCACATATACAT
*
82598067 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCAC-ATACATATCTCATACATATTTCAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAATACATATCTCATACATATTTCAC
82598131 ACTAGCCATTCGGCTTTACCACATATACAT
66 ACTAGCCATTCGGCTTTACCACATATACAT
* *
82598161 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA-ATACATATCTCATACATATTTCA
82598226 CACTAGCCATTCGGCTTTACCAC
65 CACTAGCCATTCGGCTTTACCAC
82598249 GCACATATAT
Statistics
Matches: 175, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
94 92 0.53
96 83 0.47
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (95 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAATACATATCTCATACATATTTCAC
ACTAGCCATTCGGCTTTACCACATATACAT
Found at i:82598255 original size:142 final size:142
Alignment explanation
Indices: 82597965--82598256 Score: 521
Period size: 142 Copynumber: 2.1 Consensus size: 142
82597955 GCCACAATAT
* *
82597965 ACACACATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
82598030 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATT
66 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATT
*
82598095 TGGCTTTACCAC
131 CGGCTTTACCAC
*
82598107 ATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
* *
82598172 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCATT
66 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATT
82598237 CGGCTTTACCAC
131 CGGCTTTACCAC
*
82598249 GCACATAT
1 ACACATAT
82598257 ATATTTATCT
Statistics
Matches: 142, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
142 142 1.00
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (142 bp):
ACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATT
CGGCTTTACCAC
Found at i:82600750 original size:27 final size:27
Alignment explanation
Indices: 82600693--82600772 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
82600683 AATGGATAAG
* * **
82600693 TTGTAGAATCACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGAC
82600720 TTGTAAAATTACCAAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-GAC
*
82600747 TTGTAAAATTACCAAAGTACCCCTGA
1 TTGTAAAATTACCAAAATACCCCTGA
82600773 TTTACAGAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 4 0.09
27 38 0.83
28 4 0.09
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGAC
Found at i:82600762 original size:54 final size:54
Alignment explanation
Indices: 82600693--82600825 Score: 140
Period size: 54 Copynumber: 2.5 Consensus size: 54
82600683 AATGGATAAG
* * * **
82600693 TTGTAGAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCTCGAC
* * *** *
82600747 TTGTAAAATTACCAAAGTACCCCTGATTTACAGAATTACCATTTTACCCTCGAT
1 TTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCTCGAC
** *
82600801 TTACAAAATTACCGAAATACCCCTG
1 TTGTAAAATTACCAAAATACCCCTG
82600826 TAGGGTAGGT
Statistics
Matches: 64, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCTCGAC
Found at i:82600783 original size:27 final size:27
Alignment explanation
Indices: 82600703--82600825 Score: 106
Period size: 27 Copynumber: 4.6 Consensus size: 27
82600693 TTGTAGAATC
* **
82600703 ACCAAAATACCCCTGGTTTGTAAAATT
1 ACCAAAATACCCCTGATTTACAAAATT
* **
82600730 ACCAAAATA-CCCTCGACTTGTAAAATT
1 ACCAAAATACCCCT-GATTTACAAAATT
* *
82600757 ACCAAAGTACCCCTGATTTACAGAATT
1 ACCAAAATACCCCTGATTTACAAAATT
***
82600784 ACCATTTTA-CCCTCGATTTACAAAATT
1 ACCAAAATACCCCT-GATTTACAAAATT
*
82600811 ACCGAAATACCCCTG
1 ACCAAAATACCCCTG
82600826 TAGGGTAGGT
Statistics
Matches: 77, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
26 8 0.10
27 61 0.79
28 8 0.10
ACGTcount: A:0.37, C:0.27, G:0.09, T:0.28
Consensus pattern (27 bp):
ACCAAAATACCCCTGATTTACAAAATT
Found at i:82601014 original size:10 final size:10
Alignment explanation
Indices: 82600999--82601029 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
82600989 CGTGGGAGAT
82600999 ATCGTCATCA
1 ATCGTCATCA
82601009 ATCGTCATCA
1 ATCGTCATCA
82601019 ATCGTCATCA
1 ATCGTCATCA
82601029 A
1 A
82601030 CCAGGTGTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.32, C:0.29, G:0.10, T:0.29
Consensus pattern (10 bp):
ATCGTCATCA
Found at i:82601532 original size:27 final size:26
Alignment explanation
Indices: 82601501--82601552 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
82601491 CACGCTGCAA
*
82601501 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
82601528 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
82601553 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:82601601 original size:18 final size:18
Alignment explanation
Indices: 82601567--82601603 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
82601557 CCTCGCTGCA
* *
82601567 ATCTGGTGGCTTCGCCAC
1 ATCTGGTGGCCTAGCCAC
82601585 ATCTGGTGGCCTAGCCAC
1 ATCTGGTGGCCTAGCCAC
82601603 A
1 A
82601604 ATATCTGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.16, C:0.32, G:0.27, T:0.24
Consensus pattern (18 bp):
ATCTGGTGGCCTAGCCAC
Found at i:82603097 original size:27 final size:27
Alignment explanation
Indices: 82603076--82603389 Score: 380
Period size: 27 Copynumber: 11.6 Consensus size: 27
82603066 TTAGTTTACC
82603076 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
82603103 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
82603130 AAATCACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
82603157 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
82603184 AAATTACTAAAATACCCTTTA-TTTATA
1 AAATTACCAAAATACCC-CTAGTTTGTA
*
82603211 AAATTACCAAAATAACCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
82603238 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
**
82603265 AAATTACCAAAATACCCCGGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
82603292 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
82603319 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
82603346 AAATTACCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
**
82603373 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
82603390 TCGACCTGTA
Statistics
Matches: 248, Mismatches: 36, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 3 0.01
27 244 0.98
28 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:82603154 original size:54 final size:54
Alignment explanation
Indices: 82603076--82603461 Score: 423
Period size: 54 Copynumber: 7.1 Consensus size: 54
82603066 TTAGTTTACC
* * * * *
82603076 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
*
82603130 AAATCACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* ** * * *
82603184 AAATTACTAAAATACCCTTTATTTATAAAATTACCAAAATAACCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* * * *
82603238 AAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCGGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* *
82603292 AAATTACCAAAATACCCTTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* * * ** ***
82603346 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-GGTTTGTA
*** **** * * *
82603400 AAATTATTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
*
82603454 GAATTACC
1 AAATTACC
82603462 GTTTTACCCT
Statistics
Matches: 280, Mismatches: 50, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
53 4 0.01
54 272 0.97
55 4 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
Found at i:82603211 original size:81 final size:81
Alignment explanation
Indices: 82603076--82603461 Score: 434
Period size: 81 Copynumber: 4.8 Consensus size: 81
82603066 TTAGTTTACC
* *
82603076 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAA
82603141 ATACCCTTGGTTTGTA
66 ATACCCTTGGTTTGTA
* * **
82603157 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAA
*
82603222 ATAACCC-TAGTTTGTA
66 AT-ACCCTTGGTTTGTA
* * * * ** *
82603238 AAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCGGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAA
82603303 ATACCCTTGGTTTGTA
66 ATACCCTTGGTTTGTA
* * * * * **
82603319 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAA
* ***
82603384 ATACCCTCGACCTGTA
66 ATACCCTTGGTTTGTA
*** ** * * * *
82603400 AAATTATTGAAATA-CCCTCAACTTGTAAAATTACCAAAGTACCCCTGATTTATAGAATTACC
1 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACC
82603462 GTTTTACCCT
Statistics
Matches: 263, Mismatches: 39, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
80 8 0.03
81 251 0.95
82 4 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAA
ATACCCTTGGTTTGTA
Found at i:82603442 original size:27 final size:27
Alignment explanation
Indices: 82603076--82603443 Score: 343
Period size: 27 Copynumber: 13.6 Consensus size: 27
82603066 TTAGTTTACC
*
82603076 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
* * *
82603103 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGGTTTGTA
* *
82603130 AAATCACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
82603157 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
* *** *
82603184 AAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCTCGGTTTGTA
*
82603211 AAATTACCAAAATAACCCT-AGTTTGTA
1 AAATTACCAAAAT-ACCCTCGGTTTGTA
* ** *
82603238 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTCGGTTTGTA
82603265 AAATTACCAAAATACCC-CGGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
*
82603292 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
* *
82603319 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
* *
82603346 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GGTTTGTA
** ***
82603373 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
*** ***
82603400 AAATTATTGAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
*
82603427 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
82603444 CTGATTTATA
Statistics
Matches: 287, Mismatches: 45, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
26 5 0.02
27 276 0.96
28 6 0.02
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGGTTTGTA
Found at i:82603484 original size:81 final size:81
Alignment explanation
Indices: 82603179--82603498 Score: 198
Period size: 81 Copynumber: 4.0 Consensus size: 81
82603169 TACCCCTGGT
* * * * * * ** **
82603179 TTGTAAAATTACTAAAATACCCTTTATTTATAAAATTACCAAAATAACCCTAG-TTTGTAAAATT
1 TTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACCGAAAT-ACCCTCGACCTACAAAATT
* ****
82603243 ACTAAAATACCCTTTGT
65 ACTGAAATACCCTCAAC
* * * * * * * *** **
82603260 TTATAAAATTACCAAAATACCCCGGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCCTCGACCTACAAAATTA
* **
82603325 -TCAAAATACCC-CTAGT
66 CT-GAAATACCCTC-AAC
* * **
82603341 TTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCCTCGACCTACAAAATTA
*
82603406 TTGAAATACCCTCAAC
66 CTGAAATACCCTCAAC
* *** **
82603422 TTGTAAAATTACCAAAGTACCCCTGATTTAT-AGAATTACCGTTTTACCCTCGATTTACAAAATT
1 TTGTAAAATTACCAAAATACCCCTGATTTATGA-AATTACCGAAATACCCTCGACCTACAAAATT
*
82603486 ACTGGAATACCCT
65 ACTGAAATACCCT
82603499 TGTAGGGTAA
Statistics
Matches: 198, Mismatches: 35, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
80 8 0.04
81 188 0.95
82 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (81 bp):
TTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCCTCGACCTACAAAATTA
CTGAAATACCCTCAAC
Found at i:82603510 original size:27 final size:27
Alignment explanation
Indices: 82603482--82603812 Score: 432
Period size: 27 Copynumber: 12.3 Consensus size: 27
82603472 CGATTTACAA
* * * *
82603482 AATTACTGGAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82603509 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82603536 AATTACCGAAATA-CCCTAGTTGGGTAG
1 AATTACCGAAATACCCCT-GTAGGGTAG
*
82603563 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
82603590 AATTATTGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
82603617 AAATACCGGAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
82603644 AATTATCGGAATACCCCTGTAGCGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82603671 AATTACC-AGAATACCCTTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
82603698 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82603725 AATTACCGAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
82603752 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82603779 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
82603806 AATTACC
1 AATTACC
82603813 AAAAGACCAT
Statistics
Matches: 266, Mismatches: 34, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.02
27 257 0.97
28 5 0.02
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:82605624 original size:40 final size:40
Alignment explanation
Indices: 82605497--82605626 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
82605487 TTGCTGGAAA
* * *
82605497 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
82605537 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
82605577 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
82605617 TTATATCCGG
1 TTATATCCGG
82605627 TTGTATTCCA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:82608410 original size:22 final size:22
Alignment explanation
Indices: 82608377--82608441 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
82608367 TTAAAGCCTT
* *
82608377 CTGATTATGGCTTTGTGTCAAC
1 CTGAATATGGCTTTGTGCCAAC
*
82608399 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-ATATGGCTTTGTGCCAAC
*
82608421 CTGATTATGGCTTTGTGCCAA
1 CTGAATATGGCTTTGTGCCAA
82608442 ACGTTTTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (22 bp):
CTGAATATGGCTTTGTGCCAAC
Found at i:82608630 original size:27 final size:27
Alignment explanation
Indices: 82608600--82608701 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
82608590 ATTCTGTTAA
* *
82608600 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
82608627 GTGGTTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
82608654 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
82608681 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
82608702 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.12
27 50 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:82608883 original size:31 final size:31
Alignment explanation
Indices: 82608846--82608933 Score: 140
Period size: 31 Copynumber: 2.8 Consensus size: 31
82608836 ACATTATGAT
82608846 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
*
82608877 TTTTGATTCTGTTACCTGATACTAATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
* * *
82608908 TTTTGATTCTGTCACCTAATTCTGAT
1 TTTTGATTCTGTTACCTGATACTGAT
82608934 AATGTTTCTT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 52 1.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACTGATTCTGA
Found at i:82609953 original size:13 final size:13
Alignment explanation
Indices: 82609935--82609965 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
82609925 TGACTTCTCC
82609935 ACACGGCCACAAG
1 ACACGGCCACAAG
82609948 ACACGGCCACAAG
1 ACACGGCCACAAG
82609961 ACACG
1 ACACG
82609966 CCCATGTGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.39, C:0.39, G:0.23, T:0.00
Consensus pattern (13 bp):
ACACGGCCACAAG
Found at i:82611013 original size:24 final size:24
Alignment explanation
Indices: 82610982--82611094 Score: 85
Period size: 24 Copynumber: 4.9 Consensus size: 24
82610972 AAGCTCTTCA
* *
82610982 TGAGCTGATAATAGTAAGCTCTAT
1 TGAGCTGAAAACAGTAAGCTCTAT
* *
82611006 TGAGCTGAAAACGGTTAGCTCTAT
1 TGAGCTGAAAACAGTAAGCTCTAT
* *
82611030 TGAGCTG--CACAGTAAGTTCT-T
1 TGAGCTGAAAACAGTAAGCTCTAT
* *
82611051 TCAAGCTG-AATCAGTAAGCTCCTA-
1 T-GAGCTGAAAACAGTAAGCT-CTAT
*
82611075 TGAGCT-AAAACAATAAGCTC
1 TGAGCTGAAAACAGTAAGCTC
82611095 ATACAAGTTA
Statistics
Matches: 69, Mismatches: 15, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
21 2 0.03
22 15 0.22
23 22 0.32
24 30 0.43
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (24 bp):
TGAGCTGAAAACAGTAAGCTCTAT
Found at i:82615131 original size:37 final size:37
Alignment explanation
Indices: 82615074--82615201 Score: 211
Period size: 37 Copynumber: 3.4 Consensus size: 37
82615064 TTATTACGAA
* *
82615074 GTCTTACCCGAACATGATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
82615111 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
82615148 GTCTTACCCGGACATAATCTCCACACGTGGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
82615185 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
82615202 TTTCCAAGTT
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
37 81 0.94
38 5 0.06
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:82615296 original size:48 final size:48
Alignment explanation
Indices: 82615241--82615440 Score: 310
Period size: 48 Copynumber: 4.2 Consensus size: 48
82615231 TATTACAACA
*
82615241 TTCACATTAGCCATTCGGCTTTACTACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
82615289 TTTACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * ** * *
82615337 TTTACATTAGCCATTCGGCTTTACCACATACACATATCTTATATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
82615385 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
82615433 TTCACATT
1 TTCACATT
82615441 CATCACATCG
Statistics
Matches: 137, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 137 1.00
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:82617622 original size:17 final size:17
Alignment explanation
Indices: 82617600--82617633 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
82617590 AATTATAAGC
82617600 ATTATAATA-TAAAATAT
1 ATTATAA-AGTAAAATAT
82617617 ATTATAAAGTAAAATAT
1 ATTATAAAGTAAAATAT
82617634 GAGTGGCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 1 0.06
17 15 0.94
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
ATTATAAAGTAAAATAT
Found at i:82623730 original size:33 final size:33
Alignment explanation
Indices: 82623688--82623756 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
82623678 CATTGCTGAG
*
82623688 ATTGTGAGATTGCACGGGGTGCCTATTTCTATC
1 ATTGTGAGATTGCACAGGGTGCCTATTTCTATC
82623721 ATTGTGAGATTGCACAGGGTGCCTATTTCTATC
1 ATTGTGAGATTGCACAGGGTGCCTATTTCTATC
82623754 ATT
1 ATT
82623757 TCGGATAGAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.38
Consensus pattern (33 bp):
ATTGTGAGATTGCACAGGGTGCCTATTTCTATC
Found at i:82625517 original size:51 final size:50
Alignment explanation
Indices: 82625462--82625627 Score: 178
Period size: 51 Copynumber: 3.3 Consensus size: 50
82625452 TGATGGCCAG
*
82625462 CACATAGTACCACCATTGTAGTCAAAGCTACCTTTTTCACAAAGTGGCCTT
1 CACATAGTACCACCATTGTAG-CAAAGCTATCTTTTTCACAAAGTGGCCTT
* *
82625513 CACATAGTACCA-CACTTGTGACCAAAGCTATCTTTCTTCACAAAGTAGCCTT
1 CACATAGTACCACCA-TTGT-AGCAAAGCTATCTTT-TTCACAAAGTGGCCTT
* * * * *
82625565 CAAATAGTATCACACTATTG-A-CCAAGCTATC-TCTTCTCAAAGTGGCCTT
1 CACATAGTA-C-CACCATTGTAGCAAAGCTATCTTTTTCACAAAGTGGCCTT
82625614 CACATAGTACCACC
1 CACATAGTACCACC
82625628 CTCGAGTCAC
Statistics
Matches: 98, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
47 3 0.03
48 1 0.01
49 22 0.22
50 3 0.03
51 37 0.38
52 25 0.26
53 1 0.01
54 5 0.05
55 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (50 bp):
CACATAGTACCACCATTGTAGCAAAGCTATCTTTTTCACAAAGTGGCCTT
Found at i:82625572 original size:52 final size:52
Alignment explanation
Indices: 82625462--82625626 Score: 200
Period size: 52 Copynumber: 3.2 Consensus size: 52
82625452 TGATGGCCAG
* *
82625462 CACATAGTACCAC-C-ATTGTAGTCAAAGCTACCTTT-TTCACAAAGTGGCCTT
1 CACATAGTACCACACTATTG-A-CCAAAGCTATCTTTCTTCACAAAGTGGCCTT
*
82625513 CACATAGTACCACACT-TGTGACCAAAGCTATCTTTCTTCACAAAGTAGCCTT
1 CACATAGTACCACACTAT-TGACCAAAGCTATCTTTCTTCACAAAGTGGCCTT
* * *
82625565 CAAATAGTATCACACTATTGACC-AAGCTATC--TCTTCTCAAAGTGGCCTT
1 CACATAGTACCACACTATTGACCAAAGCTATCTTTCTTCACAAAGTGGCCTT
82625614 CACATAGTACCAC
1 CACATAGTACCAC
82625627 CCTCGAGTCA
Statistics
Matches: 100, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
49 27 0.27
51 33 0.33
52 37 0.37
53 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.28
Consensus pattern (52 bp):
CACATAGTACCACACTATTGACCAAAGCTATCTTTCTTCACAAAGTGGCCTT
Found at i:82633227 original size:49 final size:51
Alignment explanation
Indices: 82633062--82633239 Score: 236
Period size: 51 Copynumber: 3.5 Consensus size: 51
82633052 CAGATACACG
* * * * * *
82633062 GTGGCCTGCACGTAGTACCACCCTTGT-AGTCAAAGCTACCTTCCTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATCTTCTTCACAAA
*
82633113 GTGGCCTTCACATAGTACTACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAA
* *
82633165 GTGGCCTTCACATAGTACCACATTTGTGACC-AAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
82633214 GTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
82633240 AGTCACTAGT
Statistics
Matches: 114, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
49 34 0.30
51 40 0.35
52 40 0.35
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
Found at i:82636315 original size:42 final size:42
Alignment explanation
Indices: 82636262--82636374 Score: 154
Period size: 43 Copynumber: 2.7 Consensus size: 42
82636252 TAAAGATTAA
**
82636262 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCC
* * *
82636304 GTGTAAAACCATAGCTGGGCTATTGGCATCGATATGAGATCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATCCC
* *
82636347 ATGTAAGACCATATTTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
82636375 TGGTATGGTA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 25 0.42
43 35 0.58
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCC
Found at i:82636444 original size:12 final size:12
Alignment explanation
Indices: 82636427--82636451 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82636417 TATTCCAAGC
82636427 AATTCAACGGGA
1 AATTCAACGGGA
82636439 AATTCAACGGGA
1 AATTCAACGGGA
82636451 A
1 A
82636452 TGTTGAAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (12 bp):
AATTCAACGGGA
Found at i:82639505 original size:44 final size:43
Alignment explanation
Indices: 82639457--82639613 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
82639447 TGTGTTATCG
*
82639457 TGTAAGACCATGTCTGGGACATTGGCATCA-ACTTATGATTTAAA
1 TGTAAGACCATGTCTGGGACATTGGCATCATA-TT-TGATTTACA
* ** *
82639501 TGTAAGACCATGTCTGGGAGAGCGGCATCATATTTGATTT-CG
1 TGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTTACA
***
82639543 TGTAAGATTTTGTCTGGGAC-TGTGGCATCGATATTTG-TTTACA
1 TGTAAGACCATGTCTGGGACAT-TGGCATC-ATATTTGATTTACA
* *
82639586 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
82639614 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
42 25 0.27
43 36 0.39
44 30 0.33
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTTACA
Found at i:82639560 original size:42 final size:43
Alignment explanation
Indices: 82639511--82639592 Score: 105
Period size: 42 Copynumber: 1.9 Consensus size: 43
82639501 TGTAAGACCA
* *
82639511 TGTCTGGGAGAGCGGCATC-ATATTTGATTT-CGTGTAAGATTT
1 TGTCTGGGACAGCGGCATCGATATTTG-TTTACATGTAAGATTT
* *
82639553 TGTCTGGGACTGTGGCATCGATATTTGTTTACATGTAAGA
1 TGTCTGGGACAGCGGCATCGATATTTGTTTACATGTAAGA
82639593 CCACGTCTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 19 0.56
43 15 0.44
ACGTcount: A:0.22, C:0.12, G:0.28, T:0.38
Consensus pattern (43 bp):
TGTCTGGGACAGCGGCATCGATATTTGTTTACATGTAAGATTT
Found at i:82650338 original size:40 final size:40
Alignment explanation
Indices: 82650210--82650340 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
82650200 TATGCTGGAA
* * * *
82650210 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
82650250 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
82650290 ATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
82650330 ATTATATCCGG
1 ATTATATCCGG
82650341 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:82667316 original size:29 final size:29
Alignment explanation
Indices: 82667283--82667414 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
82667273 GTGACGAGAT
82667283 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
82667312 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
82667341 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
82667370 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
82667399 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
82667415 GGCTTAAATT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:82669246 original size:27 final size:27
Alignment explanation
Indices: 82669205--82669374 Score: 180
Period size: 27 Copynumber: 6.3 Consensus size: 27
82669195 TGGGCAAGGA
* *
82669205 AGTCATCTTACCACATAAGGGAAAAAC
1 AGTCATTTTACCACAAAAGGGAAAAAC
* *
82669232 AGTCATTTTAACACAAAAGGGAAAACC
1 AGTCATTTTACCACAAAAGGGAAAAAC
* * *
82669259 AGTCATTTTACCACATAAGGGCAAAAT
1 AGTCATTTTACCACAAAAGGGAAAAAC
* *
82669286 AGTCATTTTACCTCAAAAGGGAAAAAT
1 AGTCATTTTACCACAAAAGGGAAAAAC
* ** *
82669313 AGTTATTTTACCTTAAAAGGGCAAAAC
1 AGTCATTTTACCACAAAAGGGAAAAAC
* * *
82669340 AATCATTTTATCTCAAAA-GGACAAAAC
1 AGTCATTTTACCACAAAAGGGA-AAAAC
82669367 AGTCATTT
1 AGTCATTT
82669375 AATTAATTTG
Statistics
Matches: 120, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
26 2 0.02
27 118 0.98
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.25
Consensus pattern (27 bp):
AGTCATTTTACCACAAAAGGGAAAAAC
Found at i:82669270 original size:54 final size:54
Alignment explanation
Indices: 82669205--82669374 Score: 207
Period size: 54 Copynumber: 3.1 Consensus size: 54
82669195 TGGGCAAGGA
* * * *
82669205 AGTCATCTTACCACATAAGGGAAAAACAGTCATTTTAACACAAAAGGGAAAACC
1 AGTCATTTTACCACATAAGGGCAAAACAGTCATTTTAACTCAAAAGGGAAAAAC
* * *
82669259 AGTCATTTTACCACATAAGGGCAAAATAGTCATTTTACCTCAAAAGGGAAAAAT
1 AGTCATTTTACCACATAAGGGCAAAACAGTCATTTTAACTCAAAAGGGAAAAAC
* ** * * *
82669313 AGTTATTTTACCTTAAAAGGGCAAAACAATCATTTTATCTCAAAA-GGACAAAAC
1 AGTCATTTTACCACATAAGGGCAAAACAGTCATTTTAACTCAAAAGGGA-AAAAC
82669367 AGTCATTT
1 AGTCATTT
82669375 AATTAATTTG
Statistics
Matches: 99, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
53 3 0.03
54 96 0.97
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.25
Consensus pattern (54 bp):
AGTCATTTTACCACATAAGGGCAAAACAGTCATTTTAACTCAAAAGGGAAAAAC
Found at i:82671794 original size:93 final size:93
Alignment explanation
Indices: 82671687--82671857 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
82671677 GCCCCTAAGT
* *
82671687 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82671752 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
82671780 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82671845 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82671858 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:82671854 original size:46 final size:46
Alignment explanation
Indices: 82671682--82671854 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
82671672 AACCCGCCCC
* * * *
82671682 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTA
*
82671728 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-T-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCTA
* *
82671776 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTA
82671821 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82671855 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTA
Found at i:82672311 original size:30 final size:30
Alignment explanation
Indices: 82672277--82672336 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
82672267 ATTTAATATG
*
82672277 AACTTTGGAAAAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
82672307 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
82672337 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:82673395 original size:37 final size:37
Alignment explanation
Indices: 82673330--82673481 Score: 241
Period size: 37 Copynumber: 4.1 Consensus size: 37
82673320 ACCTTTAGCT
* * * *
82673330 CGGACGAAATCTCCACATGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
82673367 CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
82673404 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* *
82673441 CGGACATACTCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
82673478 CGGA
1 CGGA
82673482 ATATATTTCC
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:82673699 original size:47 final size:47
Alignment explanation
Indices: 82673645--82674065 Score: 617
Period size: 47 Copynumber: 9.0 Consensus size: 47
82673635 TTTCACACTA
* * * * *
82673645 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
82673692 GTCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
82673739 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
82673786 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATAACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
82673833 GCCATTCGGCCTTATCACATACATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
82673880 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
82673927 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
82673974 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* ***
82674021 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
82674066 AAAATCCTAA
Statistics
Matches: 335, Mismatches: 39, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 335 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:82674065 original size:94 final size:94
Alignment explanation
Indices: 82673645--82674044 Score: 683
Period size: 94 Copynumber: 4.3 Consensus size: 94
82673635 TTTCACACTA
* * *
82673645 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGTCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
82673710 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* * * *
82673739 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTCATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
* * * *
82673804 ATATATGCATGTTCACATTCATAACATAG
66 ACATATGCATGCTCACATTCATCACATTG
*
82673833 GCCATTCGGCCTTATCACATACATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
82673898 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
*
82673927 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
82673992 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
82674021 GCCATTCGGCCTTATCACATATAT
1 GCCATTCGGCCTTATCACATATAT
82674045 ACACATTCAC
Statistics
Matches: 284, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 284 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
ACATATGCATGCTCACATTCATCACATTG
Found at i:82678058 original size:40 final size:40
Alignment explanation
Indices: 82678014--82678565 Score: 852
Period size: 40 Copynumber: 13.8 Consensus size: 40
82678004 CCAGCATGAT
* * * * *
82678014 TGCTCTTCGGGACCTAGCCTGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
82678054 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82678094 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82678134 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82678174 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
82678214 TGCTCTTCGGGACTTAGTCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
82678254 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82678294 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
82678334 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82678374 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
82678414 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82678454 TGCTCTTCAGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
82678494 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
82678534 TGCTCTTCGGGATTTAGCCCGGACATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
82678566 CTCAATTCTC
Statistics
Matches: 476, Mismatches: 36, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 476 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Done.