Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 277 of 770
Found at i:83843970 original size:165 final size:165
Alignment explanation
Indices: 83843691--83844022 Score: 565
Period size: 165 Copynumber: 2.0 Consensus size: 165
83843681 AACCAAATAG
* * *
83843691 TAGGAAATAAACCATGTCAGTTCAGTCTGAAGGGTAAACCGCCTCATTTTTAACCTTACAACTTT
1 TAGGAAATAAACCAGGTCAGTTCAGTCTGAAGGGTAAACCGCCCCATTTTGAACCTTACAACTTT
* * *
83843756 TTCGCCGATCAGTGGCAAGAGTCTCGTTAGTGGTGGACTCTTTGTCTACGCTATAACAAGATTTA
66 TTCACCGATCAGTGGCAAGAGTCTCGTTAGTGGCGGACTCTTGGTCTACGCTATAACAAGATTTA
*
83843821 AATTTATTAATAAATGGATGTTTATGTAATTTTTA
131 AATTTATTAATAAATGGATGTTTATGTAATTCTTA
*
83843856 TAGGAAATAAACCAGGTCAGTTCAGTCTGAAGGGTAAACTGCCCCATTTTGAACCTTACAACTTT
1 TAGGAAATAAACCAGGTCAGTTCAGTCTGAAGGGTAAACCGCCCCATTTTGAACCTTACAACTTT
* * *
83843921 TTTACCGATCAGTGGCAAGAGTCTCGTTAGTGGCGGACTCTTGGTCTACGTTATAACAAGGTTTA
66 TTCACCGATCAGTGGCAAGAGTCTCGTTAGTGGCGGACTCTTGGTCTACGCTATAACAAGATTTA
83843986 AATTTATTAATAAATGGATGTTTATGTAATTCTTA
131 AATTTATTAATAAATGGATGTTTATGTAATTCTTA
83844021 TA
1 TA
83844023 ATTCTAAAAA
Statistics
Matches: 156, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
165 156 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (165 bp):
TAGGAAATAAACCAGGTCAGTTCAGTCTGAAGGGTAAACCGCCCCATTTTGAACCTTACAACTTT
TTCACCGATCAGTGGCAAGAGTCTCGTTAGTGGCGGACTCTTGGTCTACGCTATAACAAGATTTA
AATTTATTAATAAATGGATGTTTATGTAATTCTTA
Found at i:83845228 original size:4 final size:4
Alignment explanation
Indices: 83845221--83845247 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
83845211 CGCTTCTTTC
83845221 TAAT TAAT TAAT TAAT TAAT TAAT TAA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAA
83845248 GGACTCATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
TAAT
Found at i:83847852 original size:47 final size:47
Alignment explanation
Indices: 83847781--83848093 Score: 350
Period size: 47 Copynumber: 6.7 Consensus size: 47
83847771 TGGGTAAGGT
*
83847781 GCCGATGCCATGTCGCAGACATGGTCTTACACTGGCTCTCATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAA
* * *
83847828 GTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAA
* * * *
83847875 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTGTCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTC-AA
* * * * *
83847923 GCCTATG-CATGTCCCAAACAT-GTCTTACACTAGCTTTCATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTC-AA
* * *
83847969 GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAA
* * * ***
83848014 TGCCGATGCCATTTCCCAAACATGGTCTTACACTGGCTCTCATAATGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-CTCAA
83848063 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
83848094 AGCCAAAAAT
Statistics
Matches: 227, Mismatches: 34, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
45 1 0.00
46 74 0.33
47 121 0.53
48 30 0.13
49 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAA
Found at i:83848071 original size:140 final size:140
Alignment explanation
Indices: 83847781--83848096 Score: 404
Period size: 140 Copynumber: 2.2 Consensus size: 140
83847771 TGGGTAAGGT
* * * *
83847781 GCCGATGCCATGTCGCAGACATGGTCTTACACTGGCTCTCATCTCAAGTCGATGCCATGTCCTAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAAGGCGATGCCATGTCCCAG
* * *
83847846 ACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAGACATGGTCTTACACTGAC
64 ACATGGTCTTACACTAGCTCACATCTCAAGCCGATGCCATGTCCCAAACATGGTCTTACACTGAC
* *
83847911 TGTCATCTCGTA
129 TCTCATATCGTA
* * * *
83847923 GCCTATGCATGTCCCAAACATGTCTTACACTAGCTTTCATCTCGAGGCTGATG-CATGTCCCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGC-GATGCCATGTCCCAGA
* * * *
83847987 CAT-GTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATTTCCCAAACATGGTCTTACACTGGC
65 CATGGTCTTACACTAGCTCACATCTCAA-GCCGATGCCATGTCCCAAACATGGTCTTACACTGAC
*
83848051 TCTCATAAT-GTG
129 TCTCAT-ATCGTA
83848063 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
83848097 CAAAAATAAC
Statistics
Matches: 151, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
139 21 0.14
140 107 0.71
141 17 0.11
142 6 0.04
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (140 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCACATCTCAAGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTC
TCATATCGTA
Found at i:83852911 original size:29 final size:29
Alignment explanation
Indices: 83852869--83852930 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
83852859 ATGTATTTTT
83852869 AATATTCCTCCATAATCCATCAAAATACC
1 AATATTCCTCCATAATCCATCAAAATACC
83852898 AATATTCCTCCATAATCCATCAAAATACC
1 AATATTCCTCCATAATCCATCAAAATACC
83852927 AATA
1 AATA
83852931 ACTCATGCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.27
Consensus pattern (29 bp):
AATATTCCTCCATAATCCATCAAAATACC
Found at i:83854241 original size:47 final size:47
Alignment explanation
Indices: 83854177--83854343 Score: 280
Period size: 47 Copynumber: 3.6 Consensus size: 47
83854167 ATCCATAAGT
*
83854177 GAACTCGGACTCAACTCAAGGAGTTTGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAAGGAGTTCGGATGCCTAGTTACATCTCAC
*
83854224 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAAGGAGTTCGGATGCCTAGTTACATCTCAC
*
83854271 GAACTCGGACTCAACTCAAGGAGTTCGGATGCTTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAAGGAGTTCGGATGCCTAGTTACATCTCAC
* * *
83854318 AAACTCAGACTCAACTCAATGAGTTC
1 GAACTCGGACTCAACTCAAGGAGTTC
83854344 AGAACTCAAA
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAAGGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:83856984 original size:20 final size:20
Alignment explanation
Indices: 83856952--83857026 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
83856942 ATATGTGGGA
83856952 TATGATAT--ACATGA-ATG
1 TATGATATGCACATGATATG
*
83856969 ATATGATATGTACATGATATG
1 -TATGATATGCACATGATATG
83856990 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
83857010 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
83857027 GTAATCATAA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
18 8 0.15
20 41 0.79
21 3 0.06
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:83856987 original size:11 final size:11
Alignment explanation
Indices: 83856959--83857011 Score: 60
Period size: 11 Copynumber: 5.2 Consensus size: 11
83856949 GGATATGATA
83856959 TACATGA-ATG
1 TACATGATATG
*
83856969 -ATATGATATG
1 TACATGATATG
83856979 TACATGATATG
1 TACATGATATG
83856990 T--ATGATATG
1 TACATGATATG
*
83856999 CACATGATATG
1 TACATGATATG
83857010 TA
1 TA
83857012 TGAAATGCAC
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
9 13 0.37
10 3 0.09
11 19 0.54
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.36
Consensus pattern (11 bp):
TACATGATATG
Found at i:83857104 original size:25 final size:24
Alignment explanation
Indices: 83857076--83857169 Score: 91
Period size: 26 Copynumber: 3.8 Consensus size: 24
83857066 GAGGAAGTGC
83857076 AAAAGGGCTATGCCCCAGTTTATT
1 AAAAGGGCTATGCCCCAGTTTATT
* **
83857100 GAAAAGGGCTTATGCCCTAGTTTACCA
1 -AAAAGGGC-TATGCCCCAGTTTA-TT
*
83857127 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTATGCCCCAGTTTATT
*
83857150 AAAAGAGGCTAGGCCTCCAG
1 AAAAG-GGCTATGCC-CCAG
83857170 ATATATGATA
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
23 5 0.09
24 10 0.18
25 20 0.36
26 21 0.38
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTATGCCCCAGTTTATT
Found at i:83857121 original size:26 final size:25
Alignment explanation
Indices: 83857076--83857159 Score: 93
Period size: 26 Copynumber: 3.4 Consensus size: 25
83857066 GAGGAAGTGC
83857076 AAAAGGGC-TATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTATT
* **
83857100 GAAAAGGGCTTATGCCCTAGTTTACCA
1 -AAAAGGGCTTATGCCCCAGTTTA-TT
83857127 AAAAGGGCTT-TGCCCCAG-TTATT
1 AAAAGGGCTTATGCCCCAGTTTATT
83857150 AAAAGAGGCT
1 AAAAG-GGCT
83857160 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
23 5 0.10
24 7 0.14
25 15 0.30
26 23 0.46
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTATGCCCCAGTTTATT
Found at i:83861923 original size:53 final size:53
Alignment explanation
Indices: 83861843--83861948 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
83861833 CAAGCCTAAC
83861843 CAAAATTTTAGTATAACTTTTACAGTACATGTATTTCATAAAATTCAGAAATT
1 CAAAATTTTAGTATAACTTTTACAGTACATGTATTTCATAAAATTCAGAAATT
83861896 CAAAATTTTAGTATAACTTTTACAGTACATGTATTTCATAAAATTCAGAAATT
1 CAAAATTTTAGTATAACTTTTACAGTACATGTATTTCATAAAATTCAGAAATT
83861949 TTCTTCAATT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (53 bp):
CAAAATTTTAGTATAACTTTTACAGTACATGTATTTCATAAAATTCAGAAATT
Found at i:83862345 original size:57 final size:57
Alignment explanation
Indices: 83862277--83862391 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
83862267 GAAAATAAGA
* *
83862277 TGATATTTTCTATTACCATCTTTTAATTGTTTCAATTTCCAATTTAGTCCTTGTCCT
1 TGATATTTTCTATTACCATCTTTTAATTATTTCAATTTCCAATTTAGTCATTGTCCT
83862334 TGATATTTTCTATTACCATCTTTTAATTATTTCAATTTCCAATTTAGTCATTGTCCT
1 TGATATTTTCTATTACCATCTTTTAATTATTTCAATTTCCAATTTAGTCATTGTCCT
83862391 T
1 T
83862392 CTTTAAATTT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.23, C:0.18, G:0.06, T:0.53
Consensus pattern (57 bp):
TGATATTTTCTATTACCATCTTTTAATTATTTCAATTTCCAATTTAGTCATTGTCCT
Found at i:83865750 original size:20 final size:20
Alignment explanation
Indices: 83865725--83865765 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
83865715 CATCTAATTT
83865725 ATCAGATTCAACATGGACTA
1 ATCAGATTCAACATGGACTA
83865745 ATCAGATTCAACATGGACTA
1 ATCAGATTCAACATGGACTA
83865765 A
1 A
83865766 CTCACCACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (20 bp):
ATCAGATTCAACATGGACTA
Found at i:83871710 original size:54 final size:54
Alignment explanation
Indices: 83871647--83871827 Score: 206
Period size: 54 Copynumber: 3.4 Consensus size: 54
83871637 CTATAAGGGC
* * * * * *
83871647 ATTTCGGTAATTTTAC-ACTACAGGGGTATTTTGATAATTTTACAAATTGAGATT
1 ATTTTGGTAATTTTACAAAT-CGGGGGTATTTTGGTAATTTTACAAACTGAGACT
* *
83871701 ATTTTGGTAATTTTACAAATCGGGGGTATTTTGGTAATTTTACAAACTGGGGCT
1 ATTTTGGTAATTTTACAAATCGGGGGTATTTTGGTAATTTTACAAACTGAGACT
* **
83871755 ATTTCT-GTAATTTTACAAATCGGGGGTATTTCGGTAATTTTACAAACT-AGGGGT
1 ATTT-TGGTAATTTTACAAATCGGGGGTATTTTGGTAATTTTACAAACTGA-GACT
*
83871809 ATTTTAGTAATTTTACAAA
1 ATTTTGGTAATTTTACAAA
83871828 CTGAGGTGTT
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
53 1 0.01
54 108 0.96
55 3 0.03
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
ATTTTGGTAATTTTACAAATCGGGGGTATTTTGGTAATTTTACAAACTGAGACT
Found at i:83871829 original size:27 final size:26
Alignment explanation
Indices: 83871616--83871827 Score: 185
Period size: 27 Copynumber: 7.9 Consensus size: 26
83871606 TGCCTTACAA
** * *
83871616 GGGTATTTCAGTAATTTTACACTATAA
1 GGGTATTTTGGTAATTTTACA-AATAG
* * * *
83871643 GGGCATTTCGGTAATTTTACACTACAG
1 GGGTATTTTGGTAATTTTACA-AATAG
* *
83871670 GGGTATTTTGATAATTTTACAAATTG
1 GGGTATTTTGGTAATTTTACAAATAG
** *
83871696 AGATTATTTTGGTAATTTTACAAATCGG
1 -GGGTATTTTGGTAATTTTACAAAT-AG
83871724 GGGTATTTTGGTAATTTTACAAACT-G
1 GGGTATTTTGGTAATTTTACAAA-TAG
*
83871750 GGGCTATTTCT-GTAATTTTACAAATCGG
1 GGG-TATTT-TGGTAATTTTACAAAT-AG
*
83871778 GGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAA-TAG
*
83871805 GGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAA
83871828 CTGAGGTGTT
Statistics
Matches: 156, Mismatches: 20, Indels: 18
0.80 0.10 0.09
Matches are distributed among these distances:
26 7 0.04
27 141 0.90
28 8 0.05
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAATAG
Found at i:83871829 original size:81 final size:79
Alignment explanation
Indices: 83871615--83871830 Score: 245
Period size: 81 Copynumber: 2.7 Consensus size: 79
83871605 TTGCCTTACA
* * * * * * *
83871615 AGGGTATTTCAGTAATTTTACACTATAAGGGCATTTCGGTAATTTTACACTACAGGGGTATTTTG
1 AGGGTATTTCGGTAATTTTACA-AATAGGGGTATTTTGGTAATTTTACA-AACTGGGGTATTTTG
*
83871680 ATAATTTTACAAATTG
64 ATAATTTTACAAATCG
** * *
83871696 AGATTATTTTGGTAATTTTACAAATCGGGGGTATTTTGGTAATTTTACAAACTGGGGCTATTTCT
1 AGGGTATTTCGGTAATTTTACAAAT-AGGGGTATTTTGGTAATTTTACAAACTGGGG-TATTT-T
83871761 G-TAATTTTACAAATCG
63 GATAATTTTACAAATCG
* *
83871777 GGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACTG
1 AGGGTATTTCGGTAATTTTACAAA-TAGGGGTATTTTGGTAATTTTACAAACTG
83871831 AGGTGTTAAT
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
80 8 0.07
81 102 0.90
82 3 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (79 bp):
AGGGTATTTCGGTAATTTTACAAATAGGGGTATTTTGGTAATTTTACAAACTGGGGTATTTTGAT
AATTTTACAAATCG
Found at i:83876956 original size:56 final size:56
Alignment explanation
Indices: 83876896--83877162 Score: 381
Period size: 56 Copynumber: 4.8 Consensus size: 56
83876886 CCTCAGACAA
* * * * *
83876896 GGTCTTACTCGTACACAAATATTGGAGTCATATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACATATATATCGGAGTCACATATCGATGCCAACGTATTAAACGT
* *
83876952 GGTCTTACTCGCACATATATATCGGAGTCACATATCGATGCCAATGTATTAAACAT
1 GGTCTTACTCGCACATATATATCGGAGTCACATATCGATGCCAACGTATTAAACGT
* * * * *
83877008 GGTCTTACTCGCACACATATATCAGAGTCACATATCAATGCCAATGTATTAAATGT
1 GGTCTTACTCGCACATATATATCGGAGTCACATATCGATGCCAACGTATTAAACGT
* *
83877064 GGACTTACTCGTACATATATATCGGAGTCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACATATATATCGGAGTCACATATCGATGCCAACGTATTAAACGT
* **
83877120 GGACTTACTCGCACATATATATCAAAGTCACATATCGATGCCA
1 GGTCTTACTCGCACATATATATCGGAGTCACATATCGATGCCA
83877163 CATATACTTC
Statistics
Matches: 189, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 189 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACATATATATCGGAGTCACATATCGATGCCAACGTATTAAACGT
Found at i:83879938 original size:27 final size:27
Alignment explanation
Indices: 83879920--83880104 Score: 148
Period size: 27 Copynumber: 6.9 Consensus size: 27
83879910 TTTGCCCTAC
83879920 AAGGGTATTTCTG-TAATTTTACACTAT
1 AAGGGTATTTC-GATAATTTTACACTAT
83879947 AAGGGTATTTCGATAATTTTACACTAT
1 AAGGGTATTTCGATAATTTTACACTAT
* *
83879974 AGGGGTATTTCGATAATTTTACA-AACT
1 AAGGGTATTTCGATAATTTTACACTA-T
* * *
83880001 AAGGATATTTTGATAATTTTACA-AACT
1 AAGGGTATTTCGATAATTTTACACTA-T
** * *
83880028 GGGGGTATTTCGGTAATTTTACA-AAT
1 AAGGGTATTTCGATAATTTTACACTAT
* *
83880054 CAAGGGTGTTTC-AGTAATTTTACA-AAT
1 -AAGGGTATTTCGA-TAATTTTACACTAT
** *
83880081 CGGGGGTATTTCGCTAATTTTACA
1 -AAGGGTATTTCGATAATTTTACA
83880105 AACTGGAGGT
Statistics
Matches: 135, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.02
27 132 0.98
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTCGATAATTTTACACTAT
Found at i:83879980 original size:54 final size:52
Alignment explanation
Indices: 83879922--83880161 Score: 229
Period size: 54 Copynumber: 4.5 Consensus size: 52
83879912 TGCCCTACAA
* * *
83879922 GGGTATTTCTG-TAATTTTACACTATAAGGGTATTTCGATAATTTTACACTATAG
1 GGGTATTTC-GATAATTTTACA-AATAAGGGTATTTCGATAATTTTACA-AATGG
* *
83879976 GGGTATTTCGATAATTTTACAAACTAAGGATATTTTGATAATTTTACAAACTGG
1 GGGTATTTCGATAATTTTACAAA-TAAGGGTATTTCGATAATTTTACAAA-TGG
* *
83880030 GGGTATTTCGGTAATTTTACAAATCAAGGGTGTTTC-AGTAATTTTACAAATCGG
1 GGGTATTTCGATAATTTTACAAAT-AAGGGTATTTCGA-TAATTTTACAAAT-GG
* * *
83880084 GGGTATTTCGCTAATTTTACAAACT-GGAGGTATTT-TAGTAATTTTACAAACTGG
1 GGGTATTTCGATAATTTTACAAA-TAAG-GGTATTTCGA-TAATTTTACAAA-TGG
*
83880138 GGGTATTTC-ATTATTTTTACAAAT
1 GGGTATTTCGA-TAATTTTACAAAT
83880162 TGAGGTCTTA
Statistics
Matches: 161, Mismatches: 14, Indels: 23
0.81 0.07 0.12
Matches are distributed among these distances:
53 8 0.05
54 151 0.94
55 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.40
Consensus pattern (52 bp):
GGGTATTTCGATAATTTTACAAATAAGGGTATTTCGATAATTTTACAAATGG
Found at i:83880105 original size:27 final size:27
Alignment explanation
Indices: 83879949--83880160 Score: 202
Period size: 27 Copynumber: 7.9 Consensus size: 27
83879939 TACACTATAA
* *
83879949 GGGTATTTCGATAATTTTACACTA-TAG
1 GGGTATTTCGATAATTTTACA-AACTGG
**
83879976 GGGTATTTCGATAATTTTACAAACTAA
1 GGGTATTTCGATAATTTTACAAACTGG
* *
83880003 GGATATTTTGATAATTTTACAAACTGG
1 GGGTATTTCGATAATTTTACAAACTGG
* **
83880030 GGGTATTTCGGTAATTTTACAAA-TCAA
1 GGGTATTTCGATAATTTTACAAACT-GG
*
83880057 GGGTGTTTC-AGTAATTTTACAAA-TCGG
1 GGGTATTTCGA-TAATTTTACAAACT-GG
*
83880084 GGGTATTTCGCTAATTTTACAAACTGG
1 GGGTATTTCGATAATTTTACAAACTGG
* *
83880111 AGGTATTT-TAGTAATTTTACAAACTGG
1 GGGTATTTCGA-TAATTTTACAAACTGG
*
83880138 GGGTATTTC-ATTATTTTTACAAA
1 GGGTATTTCGA-TAATTTTACAAA
83880161 TTGAGGTCTT
Statistics
Matches: 155, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.01
27 152 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAACTGG
Found at i:83883619 original size:18 final size:18
Alignment explanation
Indices: 83883574--83883611 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
83883564 CGTACATGAG
* *
83883574 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAAAAAAGAA
83883592 AGAAAAAAAAAAAAAGAA
1 AGAAAAAAAAAAAAAGAA
83883610 AG
1 AG
83883612 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAAAAAAGAA
Found at i:83884909 original size:40 final size:40
Alignment explanation
Indices: 83884850--83884956 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
83884840 CAATTGAATG
* * * *
83884850 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
83884890 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
83884930 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
83884957 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:83884976 original size:40 final size:39
Alignment explanation
Indices: 83884891--83885017 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
83884881 CTGGAAATTA
* * *
83884891 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
83884929 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
83884971 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
83885011 TATCCGG
1 TATCCGG
83885018 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:83891664 original size:18 final size:18
Alignment explanation
Indices: 83891619--83891656 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
83891609 CGTACATGAG
* *
83891619 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAAAAAAGAA
83891637 AGAAAAAAAAAAAAAGAA
1 AGAAAAAAAAAAAAAGAA
83891655 AG
1 AG
83891657 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAAAAAAGAA
Found at i:83892954 original size:40 final size:40
Alignment explanation
Indices: 83892895--83893001 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
83892885 CAATTGAATG
* * * *
83892895 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
83892935 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
83892975 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
83893002 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:83893021 original size:40 final size:39
Alignment explanation
Indices: 83892936--83893062 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
83892926 CTGGAAATTA
* * *
83892936 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
83892974 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
83893016 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
83893056 TATCCGG
1 TATCCGG
83893063 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:83900799 original size:40 final size:40
Alignment explanation
Indices: 83900754--83900920 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
83900744 CGGAATATAA
83900754 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
83900794 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
83900834 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
83900874 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
83900913 CCGGATAT
1 CCGGATAT
83900921 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:83900904 original size:80 final size:79
Alignment explanation
Indices: 83900770--83900920 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
83900760 ATAATCACGT
*
83900770 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
83900835 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
83900850 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
83900913 CCGGATAT
64 CCGGATAT
83900921 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:83904571 original size:46 final size:46
Alignment explanation
Indices: 83904521--83904693 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
83904511 TGGTTGAGCA
*
83904521 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
83904567 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
83904614 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
83904660 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83904694 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:83904677 original size:93 final size:93
Alignment explanation
Indices: 83904518--83904688 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
83904508 GGATGGTTGA
* *
83904518 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
83904583 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
83904611 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
83904676 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
83904689 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83911499 original size:40 final size:40
Alignment explanation
Indices: 83911437--83911653 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
83911427 AAGCCAAGTA
* * *
83911437 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
*
83911476 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
83911516 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
*
83911555 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * * *
83911595 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
83911635 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
83911654 TTATCATCCA
Statistics
Matches: 165, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 52 0.32
40 113 0.68
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:83911570 original size:79 final size:78
Alignment explanation
Indices: 83911437--83911653 Score: 301
Period size: 79 Copynumber: 2.7 Consensus size: 78
83911427 AAGCCAAGTA
* * * * *
83911437 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCCGATATAG-TACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAGT
*
83911502 AACTCGCACGAATG
65 AACTCGCACAAATG
83911516 CCTTCGGGACTTAGCCCGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCCGATATAGT-ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAGT
83911581 AACTCGCACAAATG
65 AACTCGCACAAATG
* * *
83911595 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCC-GATA-TAGT-ACTCGCACGAATGCCTTCGGGACTTAGCCCGG
83911654 TTATCATCCA
Statistics
Matches: 125, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
78 1 0.01
79 89 0.71
80 35 0.28
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGATATAGTACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAGTA
ACTCGCACAAATG
Found at i:83919580 original size:40 final size:40
Alignment explanation
Indices: 83919518--83919775 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
83919508 AAGCCAAGTA
* * *
83919518 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
* *
83919557 CCTTCGGGACATAGCCCGGATATAGTAACTCGCATGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
83919597 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
83919637 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* *
83919677 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * * * *
83919717 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAAAG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
83919757 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
83919776 TTATCATCCA
Statistics
Matches: 202, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
39 13 0.06
40 189 0.94
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:83922406 original size:40 final size:40
Alignment explanation
Indices: 83922361--83922545 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
83922351 TACACATTCA
* *
83922361 AATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACG
* * *
83922401 AATGCCTTCGGGACTTAACCCGGATTTAGTAGCTCGCTCG
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
* *
83922441 AAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACG
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACG
* * ** * *
83922481 TATGCCGTC-GGATCTTATTCCGGATTTAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACG
*
83922521 AAAGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAT
83922546 ATCATTCGAA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 107 0.89
41 10 0.08
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
Found at i:83922525 original size:80 final size:80
Alignment explanation
Indices: 83922364--83922545 Score: 203
Period size: 80 Copynumber: 2.3 Consensus size: 80
83922354 ACATTCAAAT
* * *
83922364 GCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTT
1 GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTTAACCCGGATTT
* *
83922428 AGTAGCTCGCTCGAAA
65 AGTAGCTAGCACGAAA
* * **
83922444 GCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTATTCCGGATT
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTTAACCCGGATT
83922507 TAGTCA-CTTAGCAC-AAA
64 TAGT-AGC-TAGCACGAAA
83922524 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
83922546 ATCATTCGAA
Statistics
Matches: 86, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
79 6 0.07
80 70 0.81
81 10 0.12
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTTAACCCGGATTTA
GTAGCTAGCACGAAA
Found at i:83930377 original size:40 final size:40
Alignment explanation
Indices: 83930332--83930516 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
83930322 TACACATTCA
* *
83930332 AATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACG
* * *
83930372 AATGCCTTCGGGACTTAACCCGGATTTAGTAGCTCGCTCG
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
* *
83930412 AAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACG
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACG
* * ** * *
83930452 TATGCCGTC-GGATCTTATTCCGGATTTAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACG
*
83930492 AAAGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAT
83930517 ATCATTCGAA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 107 0.89
41 10 0.08
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
Found at i:83930496 original size:80 final size:80
Alignment explanation
Indices: 83930335--83930516 Score: 203
Period size: 80 Copynumber: 2.3 Consensus size: 80
83930325 ACATTCAAAT
* * *
83930335 GCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTT
1 GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTTAACCCGGATTT
* *
83930399 AGTAGCTCGCTCGAAA
65 AGTAGCTAGCACGAAA
* * **
83930415 GCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTATTCCGGATT
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTTAACCCGGATT
83930478 TAGTCA-CTTAGCAC-AAA
64 TAGT-AGC-TAGCACGAAA
83930495 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
83930517 ATCATTCGAA
Statistics
Matches: 86, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
79 6 0.07
80 70 0.81
81 10 0.12
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTTAACCCGGATTTA
GTAGCTAGCACGAAA
Found at i:83934788 original size:46 final size:46
Alignment explanation
Indices: 83934671--83934790 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 46
83934661 TTGAGCATTT
*
83934671 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCAGTGAGATGTAAC-ACGCA-CC
* *
83934718 GAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTAA-ACGC-CC
1 GAACTCGTTGAGTTGAGTCCGAGTTCAGTGA--GATGTAACACGCACC
*
83934764 GAGCTCGTTGAGTTGAGTCCGAGTTCA
1 GAACTCGTTGAGTTGAGTCCGAGTTCA
83934791 CTTAGGGGCG
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
46 28 0.42
47 26 0.39
48 5 0.08
50 7 0.11
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCAGTGAGATGTAACACGCACC
Found at i:83935056 original size:19 final size:20
Alignment explanation
Indices: 83935019--83935056 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
83935009 ATAAGGTGGT
83935019 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
83935039 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
83935057 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:83944284 original size:29 final size:29
Alignment explanation
Indices: 83944250--83944352 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
83944240 TAATCAGCCG
** *
83944250 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
83944279 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
83944308 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
83944337 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
83944353 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:83948608 original size:30 final size:30
Alignment explanation
Indices: 83948572--83948702 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
83948562 GACAAGATTG
* * * * *
83948572 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
83948602 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
83948630 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
83948660 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
83948689 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
83948703 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:83948663 original size:58 final size:58
Alignment explanation
Indices: 83948572--83948702 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
83948562 GACAAGATTG
* * * * * *
83948572 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
83948630 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
83948689 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
83948703 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:83956535 original size:30 final size:30
Alignment explanation
Indices: 83956499--83956629 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
83956489 GACAAGATTG
* * * * *
83956499 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
83956529 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
83956557 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
83956587 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
83956616 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
83956630 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:83956590 original size:58 final size:58
Alignment explanation
Indices: 83956499--83956629 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
83956489 GACAAGATTG
* * * * * *
83956499 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
83956557 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
83956616 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
83956630 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:83963417 original size:29 final size:29
Alignment explanation
Indices: 83963383--83963485 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
83963373 TAATCAGCCG
** *
83963383 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
83963412 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
83963441 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
83963470 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
83963486 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:83965268 original size:40 final size:40
Alignment explanation
Indices: 83965203--83965410 Score: 276
Period size: 40 Copynumber: 5.2 Consensus size: 40
83965193 TCTTCGGAAT
* ** *
83965203 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
83965242 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
83965282 TTAGCCCGAATATAACAACTCGCACAAATTCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
83965322 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * * *
83965362 TTTGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
83965402 TTAGCCCGG
1 TTAGCCCGG
83965411 GTATCATTCA
Statistics
Matches: 148, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 3 0.02
40 144 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:83967711 original size:40 final size:40
Alignment explanation
Indices: 83967666--83967833 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
83967656 CGGAATATAA
83967666 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
83967706 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
83967746 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
83967786 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
83967826 CCGGATAT
1 CCGGATAT
83967834 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:83979203 original size:27 final size:27
Alignment explanation
Indices: 83979173--83979371 Score: 229
Period size: 27 Copynumber: 7.4 Consensus size: 27
83979163 GGGCATAATT
* *
83979173 ATCATTTTACCCCATAGGGGCATTACG
1 ATCATTTTACCCTACAGGGGCATTACG
* *
83979200 ATCATTTTACCCTATAGGGGTATTACG
1 ATCATTTTACCCTACAGGGGCATTACG
* *
83979227 GTCATTTTACCCTATAGGGGCATTAC-
1 ATCATTTTACCCTACAGGGGCATTACG
* *
83979253 AGTCATTTTACCCTACAAGGGTATTACG
1 A-TCATTTTACCCTACAGGGGCATTACG
* *
83979281 GTCATTTTACCCTACAGGGGCATTATG
1 ATCATTTTACCCTACAGGGGCATTACG
*
83979308 GTCATTTTACCCTACAGGGGCATTACG
1 ATCATTTTACCCTACAGGGGCATTACG
** * * *
83979335 ATCATTTTACTTTTCATGGGTATTACG
1 ATCATTTTACCCTACAGGGGCATTACG
*
83979362 GTCATTTTAC
1 ATCATTTTAC
83979372 AAACCAGGGT
Statistics
Matches: 150, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
27 150 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.36
Consensus pattern (27 bp):
ATCATTTTACCCTACAGGGGCATTACG
Found at i:83979259 original size:54 final size:53
Alignment explanation
Indices: 83979174--83979344 Score: 252
Period size: 54 Copynumber: 3.2 Consensus size: 53
83979164 GGCATAATTA
* *
83979174 TCATTTTACCCCATAGGGGCATTACGATCATTTTACCCTATAGGGGTATTACGG
1 TCATTTTACCCTATAGGGGCATTACG-TCATTTTACCCTACAGGGGTATTACGG
*
83979228 TCATTTTACCCTATAGGGGCATTACAGTCATTTTACCCTACAAGGGTATTACGG
1 TCATTTTACCCTATAGGGGCATTAC-GTCATTTTACCCTACAGGGGTATTACGG
* * * *
83979282 TCATTTTACCCTACAGGGGCATTATGGTCATTTTACCCTACAGGGGCATTACGA
1 TCATTTTACCCTATAGGGGCATTA-CGTCATTTTACCCTACAGGGGTATTACGG
83979336 TCATTTTAC
1 TCATTTTAC
83979345 TTTTCATGGG
Statistics
Matches: 107, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
54 106 0.99
55 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (53 bp):
TCATTTTACCCTATAGGGGCATTACGTCATTTTACCCTACAGGGGTATTACGG
Found at i:83979279 original size:81 final size:81
Alignment explanation
Indices: 83979173--83979371 Score: 265
Period size: 81 Copynumber: 2.5 Consensus size: 81
83979163 GGGCATAATT
* * * * * * *
83979173 ATCATTTTACCCCATAGGGGCATTACGATCATTTTACCCTATAGGGGTATTACGGTCATTTTACC
1 ATCATTTTACCCTACAAGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACC
*
83979238 CTATAGGGGCATTAC-
66 CTACAGGGGCATTACG
*
83979253 AGTCATTTTACCCTACAAGGGTATTACGGTCATTTTACCCTACAGGGGCATTATGGTCATTTTAC
1 A-TCATTTTACCCTACAAGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTAC
83979318 CCTACAGGGGCATTACG
65 CCTACAGGGGCATTACG
** * *
83979335 ATCATTTTACTTTTCATGGGTATTACGGTCATTTTAC
1 ATCATTTTACCCTACAAGGGTATTACGGTCATTTTAC
83979372 AAACCAGGGT
Statistics
Matches: 104, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
80 1 0.01
81 102 0.98
82 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.36
Consensus pattern (81 bp):
ATCATTTTACCCTACAAGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACC
CTACAGGGGCATTACG
Found at i:83982628 original size:28 final size:28
Alignment explanation
Indices: 83982588--83982644 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
83982578 TAGCTGAATG
83982588 ACACTATAAGACAAAGGAGAGAAAAGAA
1 ACACTATAAGACAAAGGAGAGAAAAGAA
83982616 ACACTATAAGACAAAGGAGAGAAAAGAA
1 ACACTATAAGACAAAGGAGAGAAAAGAA
83982644 A
1 A
83982645 GTAAGCTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.61, C:0.11, G:0.21, T:0.07
Consensus pattern (28 bp):
ACACTATAAGACAAAGGAGAGAAAAGAA
Found at i:84001155 original size:71 final size:71
Alignment explanation
Indices: 84001067--84001230 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
84001057 GAGATGTATC
84001067 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84001132 AGGACA
66 AGGACA
*
84001138 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
84001203 CGGACA
66 AGGACA
84001209 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
84001231 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:84010088 original size:29 final size:29
Alignment explanation
Indices: 84010046--84010103 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
84010036 ATACCAGTGC
*
84010046 GTACTGATTATTCGTTGCAGAAGCTAGCT
1 GTACTGATTATTCGTTACAGAAGCTAGCT
84010075 GTACTGATTATTCGTTACAGAAGCTAGCT
1 GTACTGATTATTCGTTACAGAAGCTAGCT
84010104 AAGCTGTATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.34
Consensus pattern (29 bp):
GTACTGATTATTCGTTACAGAAGCTAGCT
Found at i:84011446 original size:364 final size:364
Alignment explanation
Indices: 84010777--84011506 Score: 1415
Period size: 364 Copynumber: 2.0 Consensus size: 364
84010767 TTCCATGCTA
84010777 AGGCGTTATCGCTCTAGTCCTACGCATATTATCTCGACTGAGGAAATTAAGGTTGGATCAGATCT
1 AGGCGTTATCGCTCTAGTCCTACGCATATTATCTCGACTGAGGAAATTAAGGTTGGATCAGATCT
84010842 TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
66 TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
*
84010907 TCCCACTAGTTAAAGTACTTTAGCGTAATCACAGTTCTGAGGATGCCACGTGGAAAACTGAGGAG
131 TCCCACTAGTTAAAGTACTTTAGCGTAATCACAGTTCTGAGGATGCCACATGGAAAACTGAGGAG
84010972 GCAATGCGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCGATGCCAAAATTTTCTTTTA
196 GCAATGCGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCGATGCCAAAATTTTCTTTTA
*
84011037 GGTGGGTAGAGTTCTAACGTCCCAAAAATTTAGTAATTATTTTTGTGTGTTGTGTTACACAACTG
261 GGTGGGTAGAGTTCTAACGCCCCAAAAATTTAGTAATTATTTTTGTGTGTTGTGTTACACAACTG
*
84011102 TGTATCTGCTTCAGTGGTTATGTGTTCTGGGAGTGTCTG
326 TGTATCTGCGTCAGTGGTTATGTGTTCTGGGAGTGTCTG
84011141 AGGCGTTATCGCTCTAGTCCTACGCATATTATCTCGACTGAGGAAATTAAGGTTGGATCAGATCT
1 AGGCGTTATCGCTCTAGTCCTACGCATATTATCTCGACTGAGGAAATTAAGGTTGGATCAGATCT
84011206 TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
66 TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
*
84011271 TCCCACTAGTTAAAGTACTTTAGCGTAATCACAGTTCTGAGGATGCCACATGGGAAACTGAGGAG
131 TCCCACTAGTTAAAGTACTTTAGCGTAATCACAGTTCTGAGGATGCCACATGGAAAACTGAGGAG
*
84011336 GCAATGCGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCGATGTCAAAATTTTCTTTTA
196 GCAATGCGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCGATGCCAAAATTTTCTTTTA
84011401 GGTGGGTAGAGTTCTAACGCCCCAAAAATTTAGTAATTATTTTTGTGTGTTGTGTTACACAACTG
261 GGTGGGTAGAGTTCTAACGCCCCAAAAATTTAGTAATTATTTTTGTGTGTTGTGTTACACAACTG
84011466 TGTATCTGCGTCAGTGGTTATGTGTTCTGGGAGTGTCTG
326 TGTATCTGCGTCAGTGGTTATGTGTTCTGGGAGTGTCTG
84011505 AG
1 AG
84011507 AAGTCCTAGG
Statistics
Matches: 361, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
364 361 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (364 bp):
AGGCGTTATCGCTCTAGTCCTACGCATATTATCTCGACTGAGGAAATTAAGGTTGGATCAGATCT
TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
TCCCACTAGTTAAAGTACTTTAGCGTAATCACAGTTCTGAGGATGCCACATGGAAAACTGAGGAG
GCAATGCGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCGATGCCAAAATTTTCTTTTA
GGTGGGTAGAGTTCTAACGCCCCAAAAATTTAGTAATTATTTTTGTGTGTTGTGTTACACAACTG
TGTATCTGCGTCAGTGGTTATGTGTTCTGGGAGTGTCTG
Found at i:84013317 original size:40 final size:40
Alignment explanation
Indices: 84013248--84013385 Score: 206
Period size: 40 Copynumber: 3.5 Consensus size: 40
84013238 AACCCAAGTA
* * * *
84013248 CCTTCGGGATTTAG-CCGGATATAGCAACTCACACAAATG
1 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
84013287 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
*
84013327 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
84013367 CCTTCGGATCTTAGTCCGG
1 CCTTCGGAACTTAGCCCGG
84013386 TTATCATCCG
Statistics
Matches: 90, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 12 0.13
40 78 0.87
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:84015809 original size:40 final size:39
Alignment explanation
Indices: 84015763--84015892 Score: 127
Period size: 40 Copynumber: 3.3 Consensus size: 39
84015753 CGGAACATAA
84015763 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * * *
84015803 TCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
84015843 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
84015883 CCGGATATAA
1 CCGGATATAA
84015893 TTTCCAGCAT
Statistics
Matches: 70, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:84015907 original size:40 final size:40
Alignment explanation
Indices: 84015779--84015930 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
84015769 ATAACCATGT
* * * *
84015779 GCACAAATGCCTTCGGGTCTTAGCTCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
84015819 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
84015859 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
84015899 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
84015931 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 85 0.94
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:84015913 original size:80 final size:80
Alignment explanation
Indices: 84015779--84015928 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
84015769 ATAACCATGT
* *
84015779 GCACAAATGCCTTCGGGTCTTAGCTCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
84015843 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
84015859 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
84015922 CCCGGAT
64 CCCGGAT
84015929 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:84024661 original size:79 final size:77
Alignment explanation
Indices: 84024501--84024676 Score: 289
Period size: 79 Copynumber: 2.2 Consensus size: 77
84024491 AACCCAAGTA
*
84024501 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGACTTAGCCCGGATATAGTA
1 CCTTC-GGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGACTTAGCCCGGATATAGTA
84024566 ACTCGCACAAATG
65 ACTCGCACAAATG
*
84024579 CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGACTTAG-CCGGATATAGCAACTCGCACAAATGCCTTC-GGACTTAGCCCGGATATAGT
84024644 AACTCGCACAAATG
64 AACTCGCACAAATG
84024658 CCTTCGGATCTTAGTCCGG
1 CCTTCGGA-CTTAG-CCGG
84024677 TTATCATCCG
Statistics
Matches: 92, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
77 7 0.08
78 34 0.37
79 42 0.46
80 9 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (77 bp):
CCTTCGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGACTTAGCCCGGATATAGTAA
CTCGCACAAATG
Found at i:84024671 original size:40 final size:39
Alignment explanation
Indices: 84024501--84024676 Score: 291
Period size: 39 Copynumber: 4.5 Consensus size: 39
84024491 AACCCAAGTA
* *
84024501 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
84024540 CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATG
84024579 CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATG
84024618 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
84024658 CCTTCGGATCTTAGTCCGG
1 CCTTCGGA-CTTAGCCCGG
84024677 TTATCATCCG
Statistics
Matches: 131, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
38 7 0.05
39 76 0.58
40 48 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:84035255 original size:40 final size:39
Alignment explanation
Indices: 84035210--84035417 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
84035200 CGGAATACAA
*
84035210 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
84035250 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
84035290 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
84035330 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
84035370 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
84035410 CCGGATAT
1 CCGGATAT
84035418 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:84035350 original size:80 final size:80
Alignment explanation
Indices: 84035210--84035416 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
84035200 CGGAATACAA
* * *
84035210 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
84035274 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
84035290 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
84035354 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
84035370 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
84035417 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:84045197 original size:15 final size:16
Alignment explanation
Indices: 84045173--84045214 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
84045163 TGATATTTTC
*
84045173 TTTTGTATTTCTT-TA
1 TTTTGGATTTCTTATA
84045188 TTTTGGATTT-TTATA
1 TTTTGGATTTCTTATA
*
84045203 TTCTGGATTTCT
1 TTTTGGATTTCT
84045215 CCGTTATGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 2 0.09
15 20 0.87
16 1 0.04
ACGTcount: A:0.14, C:0.07, G:0.12, T:0.67
Consensus pattern (16 bp):
TTTTGGATTTCTTATA
Found at i:84048027 original size:59 final size:59
Alignment explanation
Indices: 84047935--84048072 Score: 240
Period size: 59 Copynumber: 2.3 Consensus size: 59
84047925 TAAGGACTGA
* *
84047935 ATTTAGCCTGGACTGGTAATTCAGATCCGAACTTATAAGAGTGAATGTCATTGTAAGGG
1 ATTTAACCTAGACTGGTAATTCAGATCCGAACTTATAAGAGTGAATGTCATTGTAAGGG
* *
84047994 ATTTAACCTAGACTGGTAATTCAGATCTGAACTTATGAGAGTGAATGTCATTGTAAGGG
1 ATTTAACCTAGACTGGTAATTCAGATCCGAACTTATAAGAGTGAATGTCATTGTAAGGG
84048053 ATTTAACCTAGACTGGTAAT
1 ATTTAACCTAGACTGGTAAT
84048073 CTCGACAACA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 75 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (59 bp):
ATTTAACCTAGACTGGTAATTCAGATCCGAACTTATAAGAGTGAATGTCATTGTAAGGG
Found at i:84050758 original size:29 final size:29
Alignment explanation
Indices: 84050709--84050765 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
84050699 TTCATACAAG
*
84050709 TCCCTACAATTTATTTATTCACATTTTAA
1 TCCCTACAATTTATTTATTCACAATTTAA
* *
84050738 TCCCT-CAATTTCTTATTTTCACAATTTA
1 TCCCTACAATTTATT-TATTCACAATTTA
84050766 GCCCAAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.28, C:0.23, G:0.00, T:0.49
Consensus pattern (29 bp):
TCCCTACAATTTATTTATTCACAATTTAA
Found at i:84051561 original size:31 final size:31
Alignment explanation
Indices: 84051523--84051587 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
84051513 GATATTGTTG
84051523 TCTCATAGTATCTTCGGGCTCCAATGTAGCC
1 TCTCATAGTATCTTCGGGCTCCAATGTAGCC
84051554 TCTCATAGTATCTTCGGGCTCCAATGTAGCC
1 TCTCATAGTATCTTCGGGCTCCAATGTAGCC
84051585 TCT
1 TCT
84051588 TCAATGCTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.34
Consensus pattern (31 bp):
TCTCATAGTATCTTCGGGCTCCAATGTAGCC
Found at i:84053979 original size:40 final size:40
Alignment explanation
Indices: 84053934--84054100 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
84053924 CGGAATATAA
*
84053934 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
84053974 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
84054014 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
84054054 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
84054093 CCGGATAT
1 CCGGATAT
84054101 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:84058385 original size:21 final size:21
Alignment explanation
Indices: 84058358--84058418 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
84058348 TATAATGAGT
84058358 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
84058379 ATCTCATACCATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
84058400 ATATTAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
84058419 CTAACAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:84058412 original size:10 final size:10
Alignment explanation
Indices: 84058358--84058419 Score: 54
Period size: 10 Copynumber: 6.0 Consensus size: 10
84058348 TATAATGAGT
84058358 ATATCATAG-C
1 ATATCAT-GTC
84058368 ATATCATGTGC
1 ATATCATGT-C
* **
84058379 ATCTCATACC
1 ATATCATGTC
84058389 ATATCATGTGC
1 ATATCATGT-C
*
84058400 ATATTATGTC
1 ATATCATGTC
84058410 ATATCATGTC
1 ATATCATGTC
84058420 TAACAATATC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.59
11 16 0.39
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (10 bp):
ATATCATGTC
Found at i:84063821 original size:40 final size:39
Alignment explanation
Indices: 84063776--84063920 Score: 148
Period size: 40 Copynumber: 3.6 Consensus size: 39
84063766 ATAACCACAA
* * *** *
84063776 GCACAATTGCCTTCGGGTCTTAACCCGAATTTGGTAACTT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGAATATAACAACTC
*
84063816 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGAATATAACAACTC
*
84063856 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGAATATAA-CAACTC
* *
84063896 GCATAAATGCCTTCGGGACTTAGCC
1 GCA-CAATGCCTTCGGGTCTTAGCC
84063921 TGGGTATCAT
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
40 89 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGAATATAACAACTC
Found at i:84063904 original size:80 final size:80
Alignment explanation
Indices: 84063747--84063920 Score: 199
Period size: 80 Copynumber: 2.2 Consensus size: 80
84063737 AACCGAGTTT
* * * * **
84063747 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGAATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGAATATAAT
*
84063811 AACTTGCACAAATGC
66 AACTCGCACAAATGC
* ** * *
84063826 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGAATATAA
* *
84063890 TCACTCGCATAAATGC
65 TAACTCGCACAAATGC
84063906 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
84063921 TGGGTATCAT
Statistics
Matches: 78, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 10 0.13
80 66 0.85
81 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGAATATAAT
AACTCGCACAAATGC
Found at i:84071812 original size:40 final size:40
Alignment explanation
Indices: 84071704--84071870 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
84071694 TTCTTCGAAT
* * *
84071704 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
84071743 TTA-ACCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
84071782 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
84071822 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
84071862 TTAGCCCGG
1 TTAGCCCGG
84071871 GTATCATTCA
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
39 33 0.31
40 72 0.68
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:84077602 original size:21 final size:21
Alignment explanation
Indices: 84077575--84077635 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
84077565 TATAATGAGT
84077575 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
84077596 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
84077617 ATATTAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
84077636 ATATCAGTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:84077629 original size:10 final size:10
Alignment explanation
Indices: 84077575--84077641 Score: 57
Period size: 10 Copynumber: 6.6 Consensus size: 10
84077565 TATAATGAGT
84077575 ATATCATAG-C
1 ATATCAT-GTC
84077585 ATATCATGTGC
1 ATATCATGT-C
* **
84077596 ATCTCATAAC
1 ATATCATGTC
84077606 ATATCATGTGC
1 ATATCATGT-C
*
84077617 ATATTATGTC
1 ATATCATGTC
84077627 ATATCATGT-
1 ATATCATGTC
84077636 ATATCA
1 ATATCA
84077642 GTATCTCATG
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
9 7 0.15
10 23 0.50
11 16 0.35
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.37
Consensus pattern (10 bp):
ATATCATGTC
Found at i:84080808 original size:40 final size:40
Alignment explanation
Indices: 84080730--84080950 Score: 302
Period size: 40 Copynumber: 5.5 Consensus size: 40
84080720 ACCCAAGTAT
* *
84080730 CTTCAGGATTTAG-CCGGATATAG-CAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTTGCACAAATGC
* * * **
84080769 CTTCGGGTCTTAGCCTGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTTGCACAAATGC
*
84080809 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTTGCACAAATGC
*
84080849 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTTGCACAAATGC
* * *
84080889 CTTTGGGACTTAGCCCGAATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTTGCACAAATGC
*
84080929 CTTCGGTACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
84080951 CATCCGAATA
Statistics
Matches: 162, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 10 0.06
40 151 0.93
41 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTTGCACAAATGC
Found at i:84086767 original size:43 final size:44
Alignment explanation
Indices: 84086646--84086802 Score: 116
Period size: 43 Copynumber: 3.6 Consensus size: 44
84086636 AGCTCGTACA
* * *
84086646 ATGCCAAC-GTCCCAGACGTGGTCTTACATGT-AATCGAATATCG
1 ATGCC-ACTGTCCTAGACATGGTCTTACATGTAAATCAAATATCG
*
84086689 ATGCCACTGTCCTAGACA-GGATCTTACACG-AAATCAAATAT-G
1 ATGCCACTGTCCTAGACATGG-TCTTACATGTAAATCAAATATCG
* *
84086731 AACT-CGA-TGTCCTAGACATGGTCTTACATGTAAATCATAA-GTCG
1 -A-TGCCACTGTCCTAGACATGGTCTTACATGTAAATCA-AATATCG
* **
84086775 ATGCCAAC-GTCCCAGATGTGGTCTTACA
1 ATGCC-ACTGTCCTAGACATGGTCTTACA
84086803 CGAAAACACA
Statistics
Matches: 91, Mismatches: 11, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
42 25 0.27
43 44 0.48
44 22 0.24
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (44 bp):
ATGCCACTGTCCTAGACATGGTCTTACATGTAAATCAAATATCG
Found at i:84090371 original size:16 final size:16
Alignment explanation
Indices: 84090346--84090378 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
84090336 CTAAATCATA
84090346 CAGAAAAATCCAAAGT
1 CAGAAAAATCCAAAGT
*
84090362 CAGAATAATCCAAAGT
1 CAGAAAAATCCAAAGT
84090378 C
1 C
84090379 TAAAAGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.21, G:0.12, T:0.15
Consensus pattern (16 bp):
CAGAAAAATCCAAAGT
Found at i:84090814 original size:22 final size:22
Alignment explanation
Indices: 84090788--84090830 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
84090778 AAGCCACCAT
*
84090788 TGATTTGAAGTTAAATTGCCAC
1 TGATTTGAAGATAAATTGCCAC
* *
84090810 TGATTTGCAGATACATTGCCA
1 TGATTTGAAGATAAATTGCCA
84090831 TTAATAACAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (22 bp):
TGATTTGAAGATAAATTGCCAC
Found at i:84106725 original size:45 final size:44
Alignment explanation
Indices: 84106635--84106765 Score: 183
Period size: 45 Copynumber: 3.0 Consensus size: 44
84106625 CCGAATTTAT
* * * *
84106635 TCACCGGCATT-TTGCCTGCTAGACTCGAGGCCCGAAAAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
*
84106678 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATGTC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAGGCCCGAATAATATC
*
84106723 TCACCAGCATTATAGCCTGCTAGGCTCCAAGGCCCGAATAATA
1 TCACCGGCATTATAGCCTGCTAGGCT-CAAGGCCCGAATAATA
84106766 CTGTACAACA
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
43 11 0.14
44 13 0.17
45 53 0.68
46 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
Found at i:84116353 original size:28 final size:28
Alignment explanation
Indices: 84116288--84116388 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
84116278 ATAGTGAATC
*
84116288 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
84116317 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
84116345 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
84116375 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84116389 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84116437 original size:29 final size:29
Alignment explanation
Indices: 84116376--84116505 Score: 174
Period size: 29 Copynumber: 4.5 Consensus size: 29
84116366 TTTTAAACCC
*** *
84116376 GCACACTTAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
84116404 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
84116434 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
84116463 GCACACTTAGTGCCATATATTT-CAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
84116491 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
84116506 ATCTCGTCAC
Statistics
Matches: 90, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 21 0.23
29 68 0.76
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:84124273 original size:28 final size:28
Alignment explanation
Indices: 84124208--84124308 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
84124198 ATAGTGAATC
*
84124208 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
84124237 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
84124265 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
84124295 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84124309 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84124357 original size:29 final size:29
Alignment explanation
Indices: 84124296--84124426 Score: 174
Period size: 29 Copynumber: 4.5 Consensus size: 29
84124286 TTTTAAACCC
*** *
84124296 GCACACTTAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
84124324 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
84124354 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
84124383 GCACACTTAGTGCCATATATTTTCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
84124412 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
84124427 ATCTCGTCAC
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 89 0.99
30 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:84135413 original size:49 final size:49
Alignment explanation
Indices: 84135341--84135437 Score: 194
Period size: 49 Copynumber: 2.0 Consensus size: 49
84135331 ATCATTGTGG
84135341 TAAGTTTGATAAGGAAATTAGATTAAAACAATATGGATGGTTAAAGGCA
1 TAAGTTTGATAAGGAAATTAGATTAAAACAATATGGATGGTTAAAGGCA
84135390 TAAGTTTGATAAGGAAATTAGATTAAAACAATATGGATGGTTAAAGGC
1 TAAGTTTGATAAGGAAATTAGATTAAAACAATATGGATGGTTAAAGGC
84135438 TAAACTATGC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.44, C:0.04, G:0.23, T:0.29
Consensus pattern (49 bp):
TAAGTTTGATAAGGAAATTAGATTAAAACAATATGGATGGTTAAAGGCA
Found at i:84137164 original size:35 final size:35
Alignment explanation
Indices: 84137123--84137192 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
84137113 TGTGAACATT
* *
84137123 AGGACTTGAGCTTTGGACCACCAGGATAGCTTAGG
1 AGGACTTGAACCTTGGACCACCAGGATAGCTTAGG
*
84137158 AGGACTTGAACCTTGGACCACTAGGATAGCTTAGG
1 AGGACTTGAACCTTGGACCACCAGGATAGCTTAGG
84137193 CACACTTAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (35 bp):
AGGACTTGAACCTTGGACCACCAGGATAGCTTAGG
Found at i:84140818 original size:53 final size:53
Alignment explanation
Indices: 84140639--84140845 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 53
84140629 ATTAGGGTTT
* * * *
84140639 AAGGATACCAAGTAAGACCATGCCAACG-CATGGCATTGGTAAGTTTGACAAGGC
1 AAGGATACCATGTAAGACCATGCCAA-GACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * *
84140693 AAGGAAATCATGTAAGGCCATGTCAAGACATGGCAATGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
84140748 AAAGATCCCATGTAAGACCATGCCATGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
84140801 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
84140846 AAAAAGGAAA
Statistics
Matches: 120, Mismatches: 30, Indels: 7
0.76 0.19 0.04
Matches are distributed among these distances:
53 46 0.38
54 35 0.29
55 39 0.32
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:84151563 original size:40 final size:40
Alignment explanation
Indices: 84151518--84151685 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
84151508 CGGAATATAA
84151518 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** *
84151558 CCGGATAGAATGTCTAGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
84151598 CCGGATGTAGCCACTAGCACAATTGCCTTCAGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
84151638 CCGGATATAATCTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
84151678 CCGGATAT
1 CCGGATAT
84151686 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:84151668 original size:80 final size:80
Alignment explanation
Indices: 84151534--84151683 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
84151524 ATAATCACGT
* * * *
84151534 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTAGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCAGGTCTTAACCCGGATAGAATCTCCAGCACGAATGCCTTCGGGAT-TTAGC
84151598 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
84151614 GCACAATTGCCTTCAGGTCTTAACCCGGATATAATCTCCAGCA-TAATTGTCTTCGGGATTTAGC
1 GCACAAATGCCTTCAGGTCTTAACCCGGATAGAATCTCCAGCACGAA-TGCCTTCGGGATTTAGC
84151678 CCGGAT
65 CCGGAT
84151684 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 2 0.03
80 57 0.95
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCAGGTCTTAACCCGGATAGAATCTCCAGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:84159568 original size:40 final size:41
Alignment explanation
Indices: 84159523--84159687 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
84159513 CGGAATATAA
84159523 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACGTAGCACAAATGCCTTCGGGTCTTAGC
* * *
84159563 CCGGATAGAAT---GTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACGTAGCACAAATGCCTTCGGGTCTTAGC
** * *
84159601 CCGGATATAGCCAC-TAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACGTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
84159641 CCGGATATAATTTC-CAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACGTAGCACAAATGCCTTCGGGTCTTAGC
84159680 CCGGATAT
1 CCGGATAT
84159688 CATTCAATTT
Statistics
Matches: 104, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
37 2 0.02
38 31 0.30
39 13 0.12
40 58 0.56
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (41 bp):
CCGGATATAATCACGTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:84162974 original size:28 final size:28
Alignment explanation
Indices: 84162934--84163001 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 28
84162924 AGTAAGTCCA
*
84162934 CACACTTAGTGCT-TAATAATCAAACTCG
1 CACACTTAGTGCTAT-ACAATCAAACTCG
*
84162962 CACACTTAGTGCTATACAATTAAACTCG
1 CACACTTAGTGCTATACAATCAAACTCG
84162990 CACACTTAGTGC
1 CACACTTAGTGC
84163002 CAATCTCATT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 36 0.97
29 1 0.03
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CACACTTAGTGCTATACAATCAAACTCG
Found at i:84168691 original size:79 final size:82
Alignment explanation
Indices: 84168575--84168759 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
84168565 ACGACTCGCT
** * *
84168575 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
84168638 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
84168655 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
*
84168718 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
84168735 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84168760 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:84168759 original size:40 final size:39
Alignment explanation
Indices: 84168568--84168759 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
84168558 GGATATAACG
* ** * *
84168568 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
84168608 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
84168648 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
84168687 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
84168727 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
84168760 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:84175882 original size:79 final size:81
Alignment explanation
Indices: 84175791--84175974 Score: 200
Period size: 79 Copynumber: 2.3 Consensus size: 81
84175781 ACGACTCGCT
* *
84175791 CAAATGCCTTCGGGACGAAGCCC-G-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACGAAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
84175853 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
** * **
84175870 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACGAAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
84175934 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
**
84175950 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACGAAGCCCGGA
84175975 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 9 0.10
79 61 0.68
80 20 0.22
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACGAAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:84175904 original size:39 final size:40
Alignment explanation
Indices: 84175791--84175974 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
84175781 ACGACTCGCT
** * *
84175791 CAAATGCCTTCGGGACGAAGCCC-G-TTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCA
* * *
84175830 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* *
84175870 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * * * *
84175909 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCA
84175950 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84175975 CATCATTCGA
Statistics
Matches: 118, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
38 2 0.02
39 50 0.42
40 55 0.47
41 11 0.09
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
Found at i:84179188 original size:40 final size:39
Alignment explanation
Indices: 84179143--84179350 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
84179133 CGGAATACAA
*
84179143 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
84179183 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
84179223 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
84179263 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
84179303 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
84179343 CCGGATAT
1 CCGGATAT
84179351 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:84179283 original size:80 final size:80
Alignment explanation
Indices: 84179143--84179349 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
84179133 CGGAATACAA
* * *
84179143 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
84179207 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
84179223 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
84179287 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
84179303 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
84179350 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:84187238 original size:40 final size:39
Alignment explanation
Indices: 84187193--84187400 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
84187183 CGGAATACAA
*
84187193 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
84187233 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
84187273 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
84187313 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
84187353 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
84187393 CCGGATAT
1 CCGGATAT
84187401 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:84187333 original size:80 final size:80
Alignment explanation
Indices: 84187193--84187399 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
84187183 CGGAATACAA
* * *
84187193 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
84187257 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
84187273 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
84187337 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
84187353 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
84187400 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:84191749 original size:28 final size:28
Alignment explanation
Indices: 84191709--84191778 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
84191699 ATAGTAAGTC
*
84191709 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
84191737 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
84191765 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84191779 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:84195772 original size:15 final size:16
Alignment explanation
Indices: 84195740--84195772 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
84195730 CTATTCTATT
84195740 TTTCTTCACCTATTCC
1 TTTCTTCACCTATTCC
*
84195756 TTTCTTCCCCT-TTCC
1 TTTCTTCACCTATTCC
84195771 TT
1 TT
84195773 AGCCATACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTCTTCACCTATTCC
Found at i:84198038 original size:36 final size:37
Alignment explanation
Indices: 84197949--84198038 Score: 137
Period size: 37 Copynumber: 2.5 Consensus size: 37
84197939 ATTTTTAGCA
* *
84197949 TGTTATCGGTTGGATTAGCTCTTATGAGCATTTGGCG
1 TGTTATCAGTTGGATTAGCTCTTATAAGCATTTGGCG
* *
84197986 TGTTATCAGTTGGATTAGCTTTTATAAGCGTTTGGCG
1 TGTTATCAGTTGGATTAGCTCTTATAAGCATTTGGCG
84198023 TGTT-TCAGTTGGATTA
1 TGTTATCAGTTGGATTA
84198039 CTTGTGTACT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
36 12 0.24
37 37 0.76
ACGTcount: A:0.18, C:0.11, G:0.28, T:0.43
Consensus pattern (37 bp):
TGTTATCAGTTGGATTAGCTCTTATAAGCATTTGGCG
Found at i:84203700 original size:17 final size:17
Alignment explanation
Indices: 84203669--84203702 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
84203659 ATTGAGAAGT
84203669 AAATTTGTTTGAATTAG
1 AAATTTGTTTGAATTAG
84203686 AAATTTGTTTGAATTAG
1 AAATTTGTTTGAATTAG
84203703 CTCAAGAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (17 bp):
AAATTTGTTTGAATTAG
Found at i:84204087 original size:40 final size:40
Alignment explanation
Indices: 84204032--84204238 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
84204022 TGAATGATAC
* * *
84204032 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
84204072 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84204112 CCGGG-TAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
84204151 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
84204191 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84204231 CC-GGCTAA
1 CCGGGCTAA
84204239 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 44 0.29
40 106 0.70
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:84204247 original size:79 final size:79
Alignment explanation
Indices: 84204028--84204238 Score: 316
Period size: 79 Copynumber: 2.7 Consensus size: 79
84204018 CATTTGAATG
* * *
84204028 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGG-TAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
*
84204093 TTTGTGCGAGTTGTT
65 TTTGTGCGAGTTGCT
* * *
84204108 ATATCCGGGTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCAT
1 ATACCCGGGTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCAT
84204173 TTGTGCGAGTTGCT
66 TTGTGCGAGTTGCT
* *
84204187 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGG-TAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA
84204239 ATTCCGAAGA
Statistics
Matches: 118, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
79 78 0.66
80 40 0.34
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
ATACCCGGGTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGCT
Found at i:84212292 original size:40 final size:40
Alignment explanation
Indices: 84212237--84212444 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
84212227 TGAATGATAC
* * *
84212237 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
84212277 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84212317 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
84212357 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
84212397 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
84212437 CC-GGCTAA
1 CCGGGCTAA
84212445 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 5 0.03
40 147 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:84216701 original size:47 final size:46
Alignment explanation
Indices: 84216642--84216788 Score: 177
Period size: 47 Copynumber: 3.1 Consensus size: 46
84216632 CATACATATC
* * ** *
84216642 TCACATTAGCCATTCGGCTTTCCCACATATATACACTTCCACGTTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACACTT-CACATTCA
* * * *
84216689 TCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTTA
1 TCACATTGGCCATTCGGCCTTATCACATATATACA-CTTCACATTCA
*
84216736 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATCCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACAC-TTCACATTCA
84216783 TCACAT
1 TCACAT
84216789 AAAATCCTAA
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
47 82 0.98
48 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATATATACACTTCACATTCA
Found at i:84216714 original size:22 final size:22
Alignment explanation
Indices: 84216688--84216763 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
84216678 TTCCACGTTC
84216688 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
84216710 ATCACATATATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
84216735 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
84216757 ATCACAT
1 ATCACAT
84216764 ATATACACAT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:84219647 original size:2 final size:2
Alignment explanation
Indices: 84219640--84219670 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
84219630 CACCTTATGA
*
84219640 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
84219671 CATGTAACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:84220406 original size:28 final size:28
Alignment explanation
Indices: 84220375--84220520 Score: 86
Period size: 28 Copynumber: 5.1 Consensus size: 28
84220365 TCGCATATGC
* *
84220375 AGTGCCCACTGACTGATTTCGCACACAT
1 AGTGCCCACTGACAGATCTCGCACACAT
* * * *
84220403 AGTGCTCGA-TTAAAGAACTCGCACACAT
1 AGTGC-CCACTGACAGATCTCGCACACAT
* *
84220431 AGTGCCTCAATTACCA-ATCTCGCACACAT
1 AGTGCC-CACTGA-CAGATCTCGCACACAT
* *
84220460 AGTGCTCGATTGA-AGAAT-TCGCACACAT
1 AGTGC-CCACTGACAG-ATCTCGCACACAT
* *
84220488 AGTGCCTCAACT-ACTGATCTGGCACACAT
1 AGTGCC-C-ACTGACAGATCTCGCACACAT
84220517 AGTG
1 AGTG
84220521 TAATACCCTA
Statistics
Matches: 91, Mismatches: 16, Indels: 21
0.71 0.12 0.16
Matches are distributed among these distances:
27 3 0.03
28 43 0.47
29 43 0.47
30 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (28 bp):
AGTGCCCACTGACAGATCTCGCACACAT
Found at i:84220453 original size:29 final size:28
Alignment explanation
Indices: 84220393--84220520 Score: 118
Period size: 29 Copynumber: 4.5 Consensus size: 28
84220383 CTGACTGATT
* *
84220393 TCGCACACATAGTGCTCGATTA-AAGAAC
1 TCGCACACATAGTGCTCAATTACAA-ATC
*
84220421 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTG-CTCAATTACAAATC
*
84220450 TCGCACACATAGTGCTCGATTGA-AGAAT-
1 TCGCACACATAGTGCTCAATT-ACA-AATC
* **
84220478 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCAATTACAAATC
*
84220507 TGGCACACATAGTG
1 TCGCACACATAGTG
84220521 TAATACCCTA
Statistics
Matches: 83, Mismatches: 10, Indels: 13
0.78 0.09 0.12
Matches are distributed among these distances:
28 37 0.45
29 45 0.54
30 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCTCAATTACAAATC
Found at i:84220460 original size:57 final size:57
Alignment explanation
Indices: 84220393--84220520 Score: 202
Period size: 57 Copynumber: 2.2 Consensus size: 57
84220383 CTGACTGATT
*
84220393 TCGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * **
84220450 TCGCACACATAGTGCTCGATTGAAGAATTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTCAACTACCAATC
*
84220507 TGGCACACATAGTG
1 TCGCACACATAGTG
84220521 TAATACCCTA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 65 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:84229454 original size:29 final size:29
Alignment explanation
Indices: 84229374--84229454 Score: 83
Period size: 29 Copynumber: 2.8 Consensus size: 29
84229364 GTGACGAGAT
* * *
84229374 TGGCACTGAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGATTGAACTATA
* * *
84229403 TGGCACTATGTGTGCGGGCTTGAA-TCATA
1 TGGCACTAAGTGTGCGAGATTGAACT-ATA
*
84229432 TGGCACTAAGTGTGCGTGATTGA
1 TGGCACTAAGTGTGCGAGATTGA
84229455 GTATTAAGCA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 1 0.02
29 42 0.98
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGATTGAACTATA
Found at i:84234438 original size:40 final size:40
Alignment explanation
Indices: 84234367--84234680 Score: 506
Period size: 40 Copynumber: 7.9 Consensus size: 40
84234357 TCATGATTCC
* *
84234367 AGCACGAATGC-CTTCGAGG-TTTAGCCTGGATATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
* *
84234406 AGCACGAATGCTTTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
84234446 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
84234486 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
84234526 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
84234566 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
84234606 AGCACAAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
84234646 AGCACGAATGCTCTTCGGGACTTAGCCCGAATATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
84234681 ACATACTAAA
Statistics
Matches: 258, Mismatches: 15, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
39 13 0.05
40 245 0.95
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:84236198 original size:47 final size:46
Alignment explanation
Indices: 84236139--84236285 Score: 168
Period size: 47 Copynumber: 3.1 Consensus size: 46
84236129 CATACATATC
* * ** *
84236139 TCACATTAGCCATTCGGCTTTCCCACATATATACACTTCCACGTTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACACTT-CACATTCA
** * * *
84236186 TCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTTA
1 TCACATTGGCCATTCGGCCTTATCACATATATACA-CTTCACATTCA
*
84236233 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATCCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACAC-TTCACATTCA
84236280 TCACAT
1 TCACAT
84236286 AAAATCCTAA
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
47 80 0.98
48 2 0.02
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATATATACACTTCACATTCA
Found at i:84243603 original size:46 final size:46
Alignment explanation
Indices: 84243473--84243596 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 46
84243463 AATAATTTTG
* * * * * *
84243473 TATTCTCGAG-TCTGCAACATATACAGGAGCTCATAACCTATTCTTG
1 TATTCTCAAGTTC-GCAACATATGCAAGAACTCACAACCTATTCTTA
* * * *
84243519 TATTCTCAAGTTTGTAAAATATGTAAGAACTCACAACCTATTCTTA
1 TATTCTCAAGTTCGCAACATATGCAAGAACTCACAACCTATTCTTA
84243565 TATTCTCAAGTTCGCAACATATGCAAGAACTC
1 TATTCTCAAGTTCGCAACATATGCAAGAACTC
84243597 GAAACCTGGA
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
46 62 0.98
47 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (46 bp):
TATTCTCAAGTTCGCAACATATGCAAGAACTCACAACCTATTCTTA
Found at i:84255679 original size:80 final size:80
Alignment explanation
Indices: 84255541--84255713 Score: 210
Period size: 80 Copynumber: 2.2 Consensus size: 80
84255531 AGCATTTGAA
* ** *
84255541 TTATA-CCGGGCTAAGTCCCGAAGGCATTTATGCTAATGATTATATCCGGGCTAAGACCCGAAGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAATGACCAAATCCGGGCTAAGACCCGAAGG
*
84255605 C-ATTCGTGCGAGTTG
66 CAATT-GTGCGAGTGG
* * *
84255620 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTTACCAAATCCGGGTTAAGACCCGAAG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAA-TGACCAAATCCGGGCTAAGACCCGAAG
**
84255684 GCAATTGTGCTTGTGG
65 GCAATTGTGCGAGTGG
84255700 TTATATCC-GGCTAA
1 TTATATCCGGGCTAA
84255714 ATTCCGAAGA
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
79 13 0.16
80 65 0.80
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (80 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAATGACCAAATCCGGGCTAAGACCCGAAGG
CAATTGTGCGAGTGG
Found at i:84255708 original size:40 final size:40
Alignment explanation
Indices: 84255540--84255713 Score: 176
Period size: 40 Copynumber: 4.4 Consensus size: 40
84255530 GAGCATTTGA
* * * *
84255540 ATTATA-CCGGGCTAAGTCCCGAAGGCATTTATGCTAATG
1 ATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
*
84255579 ATTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TG
* * *
84255620 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTT
1 ATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
** * * *
84255659 ACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
*
84255699 GTTATATCC-GGCTAA
1 ATTATATCCGGGCTAA
84255714 ATTCCGAAGA
Statistics
Matches: 109, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
39 14 0.13
40 91 0.83
41 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
Found at i:84263575 original size:40 final size:39
Alignment explanation
Indices: 84263520--84263726 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 39
84263510 TGAATGATAC
* * *
84263520 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
84263560 CCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
*
84263599 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* * *
84263639 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATAT
* * **
84263679 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
84263719 CC-GGCTAA
1 CCGGGCTAA
84263727 ATTCGAAGAA
Statistics
Matches: 146, Mismatches: 15, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
38 1 0.01
39 40 0.27
40 104 0.71
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:84263651 original size:79 final size:79
Alignment explanation
Indices: 84263520--84263726 Score: 258
Period size: 79 Copynumber: 2.6 Consensus size: 79
84263510 TGAATGATAC
* *
84263520 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGCA-TT
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
* *** *
84263583 GTGCGAGTTGTTATAT
64 GTGCAAGTTACCAAAT
*
84263599 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
84263664 TGCAAGTTACCAAAT
65 TGCAAGTTACCAAAT
* * *
84263679 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGGGCTAA
84263727 ATTCGAAGAA
Statistics
Matches: 112, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
78 2 0.02
79 58 0.52
80 49 0.44
81 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGT
GCAAGTTACCAAAT
Found at i:84265159 original size:46 final size:44
Alignment explanation
Indices: 84265105--84265251 Score: 159
Period size: 46 Copynumber: 3.2 Consensus size: 44
84265095 CGAGTGCTAC
*
84265105 TGTAAGACATGTTTGGGACATGCATCGGCCTCGAGACGCAAGCCAG
1 TGTAAGACATGTTTGGGACATGCATCGG-CTCGAGATG-AAGCCAG
* * *
84265151 TGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGATAGTCAG
1 TGTAAGACATGTTTGGGACATGCATCGGCT-CGAGATGA-AGCCAG
* * * *
84265197 TGTAAGATCATGTTTGGGATATGGCATCGACTTGAGATGTGAGCCAG
1 TGTAAGA-CATGTTTGGGACAT-GCATCGGCTCGAGATG-AAGCCAG
84265244 TGTAAGAC
1 TGTAAGAC
84265252 CGTGTCTGGA
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
45 3 0.04
46 45 0.53
47 29 0.34
48 8 0.09
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (44 bp):
TGTAAGACATGTTTGGGACATGCATCGGCTCGAGATGAAGCCAG
Done.