Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 279 of 770
Found at i:84705029 original size:17 final size:19
Alignment explanation
Indices: 84704987--84705030 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
84704977 ATGAAATTTT
*
84704987 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
84705006 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
84705024 AA-TATTA
1 AATTATTA
84705031 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:84706845 original size:28 final size:28
Alignment explanation
Indices: 84706813--84706881 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
84706803 GCGTAGATCA
84706813 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
84706841 CGAAATTACCCCTAAAGAGCATAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
84706869 CGATA-TACCCCTA
1 CGAAATTACCCCTA
84706882 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.42, C:0.28, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:84714638 original size:40 final size:40
Alignment explanation
Indices: 84714583--84714719 Score: 186
Period size: 40 Copynumber: 3.4 Consensus size: 40
84714573 CAGTTATTTG
* * *
84714583 TGGCACTTAGTGTGCGAATCGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGAATTGAGATAGCTTCAGCTATATA
*
84714623 TGGCACTTAGTGTGCGATTTGAGATAGCTTCAGCTATATA
1 TGGCACTTAGTGTGCGAATTGAGATAGCTTCAGCTATATA
* * *
84714663 CGGCACTTAGTGTGC-AATTTGAGATAGCTTCAGATATGTA
1 TGGCACTTAGTGTGCGAA-TTGAGATAGCTTCAGCTATATA
*
84714703 TAGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
84714720 GATATCGAGT
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 83 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGAATTGAGATAGCTTCAGCTATATA
Found at i:84714736 original size:28 final size:28
Alignment explanation
Indices: 84714700--84714759 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
84714690 CTTCAGATAT
* *
84714700 GTATAGCACTTAGTGTGCGAGATATCGA
1 GTATAGCACTTAGTGTGCAAGACATCGA
* *
84714728 GTATGGCACTTAGTGTGCAAGACATTGA
1 GTATAGCACTTAGTGTGCAAGACATCGA
84714756 GTAT
1 GTAT
84714760 TCAACAGCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
GTATAGCACTTAGTGTGCAAGACATCGA
Found at i:84716680 original size:80 final size:80
Alignment explanation
Indices: 84716541--84716725 Score: 203
Period size: 80 Copynumber: 2.3 Consensus size: 80
84716531 TATCTCACAT
* * * *
84716541 ACTAAGTGCCAATACATAGCCAAAGCTATTACAATCTTGCAAACTAAGTGCCATGTATAGTCGAA
1 ACTAAGTGCC-ATACATAGCCGAAGCTATTACAATC-TGCAAACTAAGTGCCATATATAGCCAAA
* **
84716606 GCTATCTCGGTCTCGCAC
64 GCCATCTC-GAATCGCAC
* * * *
84716624 ACTAAGTACCATA-ATAGCCGAAGCTATTCCAAATC-GCACACTAAGTGCCATATATAGCCAAAT
1 ACTAAGTGCCATACATAGCCGAAGCTATTAC-AATCTGCAAACTAAGTGCCATATATAGCCAAAG
84716687 CCATCTCGAATCGCAC
65 CCATCTCGAATCGCAC
* *
84716703 ACTAAGTGCCATATATATCCGAA
1 ACTAAGTGCCATACATAGCCGAA
84716726 TCATCGTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
79 19 0.22
80 37 0.43
81 15 0.17
82 7 0.08
83 9 0.10
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (80 bp):
ACTAAGTGCCATACATAGCCGAAGCTATTACAATCTGCAAACTAAGTGCCATATATAGCCAAAGC
CATCTCGAATCGCAC
Found at i:84716681 original size:40 final size:40
Alignment explanation
Indices: 84716541--84716725 Score: 169
Period size: 40 Copynumber: 4.6 Consensus size: 40
84716531 TATCTCACAT
* * * *
84716541 ACTAAGTGCCAATACATAGCCAAAGCTATTAC-AATCTTGCAA
1 ACTAAGTGCC-ATATATAGCCGAAGCTATTCCGAATC--GCAC
* * * **
84716583 ACTAAGTGCCATGTATAGTCGAAGCTATCTCGGTCTCGCAC
1 ACTAAGTGCCATATATAGCCGAAGCTAT-TCCGAATCGCAC
* *
84716624 ACTAAGTACCATA-ATAGCCGAAGCTATTCCAAATCGCAC
1 ACTAAGTGCCATATATAGCCGAAGCTATTCCGAATCGCAC
* * *
84716663 ACTAAGTGCCATATATAGCCAAATCCA-TCTCGAATCGCAC
1 ACTAAGTGCCATATATAGCCGAAGCTATTC-CGAATCGCAC
*
84716703 ACTAAGTGCCATATATATCCGAA
1 ACTAAGTGCCATATATAGCCGAA
84716726 TCATCGTCAA
Statistics
Matches: 116, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
39 22 0.19
40 53 0.46
41 28 0.24
42 11 0.09
43 2 0.02
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (40 bp):
ACTAAGTGCCATATATAGCCGAAGCTATTCCGAATCGCAC
Found at i:84717737 original size:33 final size:34
Alignment explanation
Indices: 84717657--84717763 Score: 146
Period size: 34 Copynumber: 3.2 Consensus size: 34
84717647 AGTGACAGTC
* * *
84717657 CAGTATCAGTGTGGGCCTTAACCCA-TAGCAGTAG
1 CAGTATCAATGTGGGCCTTAGCCCATTA-CAGTAA
84717691 CAGTATCAATGTGGGCCTTAGCCCATTACAGTAA
1 CAGTATCAATGTGGGCCTTAGCCCATTACAGTAA
* *
84717725 CAG-ATCAATGTGGGCCTTAGCCTATTATAGTAA
1 CAGTATCAATGTGGGCCTTAGCCCATTACAGTAA
84717758 CAGTAT
1 CAGTAT
84717764 TAGTAATGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
33 31 0.47
34 33 0.50
35 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (34 bp):
CAGTATCAATGTGGGCCTTAGCCCATTACAGTAA
Found at i:84721013 original size:28 final size:29
Alignment explanation
Indices: 84720947--84721018 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 29
84720937 GACAAGATTG
* *
84720947 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-AAATTATACA
*
84720977 GCACTAAGTGTGCGAGTTT-GATTATACA
1 GCACTAAGTGTGCGAGTTTAAATTATACA
84721005 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
84721019 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
28 21 0.54
30 18 0.46
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTAAATTATACA
Found at i:84725912 original size:34 final size:34
Alignment explanation
Indices: 84725850--84725921 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
84725840 ACAGTCCAGT
* * * *
84725850 ATCAGTGTGGGCCTTAGCCTATAGCAGTAGCAGA
1 ATCAATGTAGGCCTTAGCCAATAGCAGTAACAGA
*
84725884 ATCAATGTAGGCCTTAGCCAATTA-CAGTAACAGT
1 ATCAATGTAGGCCTTAGCCAA-TAGCAGTAACAGA
84725918 ATCA
1 ATCA
84725922 GTAATGCAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
34 30 0.94
35 2 0.06
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (34 bp):
ATCAATGTAGGCCTTAGCCAATAGCAGTAACAGA
Found at i:84726244 original size:27 final size:27
Alignment explanation
Indices: 84726185--84726244 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
84726175 AAACATAGTA
** * *
84726185 TAGGGGTATATTAGTCATTTTACCTGT
1 TAGGGGTATAACAGTCATTTCACCAGT
*
84726212 TAGGGGTATAACAGTCATTTCATCAGT
1 TAGGGGTATAACAGTCATTTCACCAGT
*
84726239 TCGGGG
1 TAGGGG
84726245 ACTAAAAGTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.37
Consensus pattern (27 bp):
TAGGGGTATAACAGTCATTTCACCAGT
Found at i:84732873 original size:29 final size:29
Alignment explanation
Indices: 84732839--84732999 Score: 103
Period size: 29 Copynumber: 5.6 Consensus size: 29
84732829 TACTCGATTT
* * *
84732839 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
84732868 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
84732897 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
84732926 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * * *
84732955 CACGCACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
84732984 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
84733000 ATCTCGTCAC
Statistics
Matches: 113, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
29 113 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:84732931 original size:58 final size:58
Alignment explanation
Indices: 84732838--84732999 Score: 191
Period size: 58 Copynumber: 2.8 Consensus size: 58
84732828 ATACTCGATT
** * * * * *
84732838 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCACGCACACTTAGTGCCATACACTTCCAGC
* * *
84732896 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATACACTTCCAGC
* * *
84732954 ACACGCACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
84733000 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
57 4 0.04
58 85 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATACACTTCCAGC
Found at i:84732985 original size:27 final size:27
Alignment explanation
Indices: 84732901--84732999 Score: 135
Period size: 29 Copynumber: 3.4 Consensus size: 27
84732891 CGAGCTCGCA
*
84732901 CACTTAGTGCCATATATTTCCAGCATGCA
1 CACTTAGTGCCATATATTTCCAGCA--CG
84732930 CACTTAGTGCCATATATTTCCAGCACACG
1 CACTTAGTGCCATATATTTCCAG--CACG
84732959 CACTTAGTGCCATATATTTCCAGCACG
1 CACTTAGTGCCATATATTTCCAGCACG
84732986 CACACTTAGTGCCA
1 --CACTTAGTGCCA
84733000 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 1, Indels: 8
0.88 0.01 0.11
Matches are distributed among these distances:
27 4 0.06
29 59 0.91
31 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.28
Consensus pattern (27 bp):
CACTTAGTGCCATATATTTCCAGCACG
Found at i:84740382 original size:29 final size:29
Alignment explanation
Indices: 84740348--84740506 Score: 103
Period size: 29 Copynumber: 5.6 Consensus size: 29
84740338 TACTCGATTT
* * *
84740348 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
84740377 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
84740406 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
84740435 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * *
84740464 CG--CACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
84740491 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
84740507 ATCTCGTCAC
Statistics
Matches: 113, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
27 27 0.24
29 86 0.76
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:84740440 original size:58 final size:58
Alignment explanation
Indices: 84740347--84740506 Score: 191
Period size: 58 Copynumber: 2.8 Consensus size: 58
84740337 ATACTCGATT
** * * * * *
84740347 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCACGCACACTTAGTGCCATACACTTCCAGC
* * *
84740405 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATACACTTCCAGC
*
84740463 ACG--CACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
84740507 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
56 40 0.45
57 4 0.04
58 45 0.51
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATACACTTCCAGC
Found at i:84740469 original size:27 final size:27
Alignment explanation
Indices: 84740410--84740506 Score: 149
Period size: 29 Copynumber: 3.4 Consensus size: 27
84740400 CGAGCTCGCA
*
84740410 CACTTAGTGCCATATATTTCCAGCATGCA
1 CACTTAGTGCCATATATTTCCAGCA--CG
84740439 CACTTAGTGCCATATATTTCCAGCACG
1 CACTTAGTGCCATATATTTCCAGCACG
84740466 CACTTAGTGCCATATATTTCCAGCACG
1 CACTTAGTGCCATATATTTCCAGCACG
84740493 CACACTTAGTGCCA
1 --CACTTAGTGCCA
84740507 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
27 28 0.43
29 37 0.57
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (27 bp):
CACTTAGTGCCATATATTTCCAGCACG
Found at i:84752349 original size:30 final size:30
Alignment explanation
Indices: 84752305--84752373 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
84752295 TAAAGATAAC
*
84752305 AAGAAAACC-GAATAAAGAAATCTAAG-ATA
1 AAGAAACCCAGAATAAAGAAATC-AAGAATA
* *
84752334 GAGAAACCCAGAATAAAGAAATCCAGAATA
1 AAGAAACCCAGAATAAAGAAATCAAGAATA
84752364 AAGAAACCCA
1 AAGAAACCCA
84752374 AGATACGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.59, C:0.16, G:0.14, T:0.10
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCAAGAATA
Found at i:84752353 original size:15 final size:15
Alignment explanation
Indices: 84752305--84752373 Score: 70
Period size: 15 Copynumber: 4.7 Consensus size: 15
84752295 TAAAGATAAC
*
84752305 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
* *
84752319 AAGAAATCTA-AGATA
1 AAGAAACCCAGA-ATA
*
84752334 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
84752349 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
84752364 AAGAAACCCA
1 AAGAAACCCA
84752374 AGATACGATA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
14 8 0.18
15 35 0.80
16 1 0.02
ACGTcount: A:0.59, C:0.16, G:0.14, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:84759080 original size:34 final size:34
Alignment explanation
Indices: 84759023--84759087 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
84759013 TTGGTATTAG
*
84759023 TGTGGGCCTTAGCCCGTATCAGTAGCAGTATCAA
1 TGTGGGCCTTAGCCCGTATCAGTAACAGTATCAA
84759057 TGTGGGCCTTAG-CC-TATTACAGTAACAGTAT
1 TGTGGGCCTTAGCCCGTA-T-CAGTAACAGTAT
84759088 TAGTAATGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 2 0.07
33 3 0.11
34 23 0.82
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (34 bp):
TGTGGGCCTTAGCCCGTATCAGTAACAGTATCAA
Found at i:84762153 original size:93 final size:93
Alignment explanation
Indices: 84762040--84762212 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
84762030 CGCCCATAAG
**
84762040 CGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCATCCATAAGTGAACTCAGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTC
84762104 AACGAGTTCGGATGCCTAGTTACATCTCT
65 AACGAGTTCGGATGCCTAGTTACATCTCT
* * * *
84762133 CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTTA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
84762198 GCGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
84762213 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCT
Found at i:84762203 original size:46 final size:44
Alignment explanation
Indices: 84762033--84762209 Score: 167
Period size: 46 Copynumber: 3.9 Consensus size: 44
84762023 TGTAACCCGC
* * *
84762033 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATTCGCAT
* *
84762079 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATTCGC-A--T
* *** *
84762125 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGG--ATTCGCAT
* *
84762172 CCATAAGTGAACTCGGACTCAACTTAGCGAGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
84762210 GCCCAAATAT
Statistics
Matches: 105, Mismatches: 19, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
45 2 0.02
46 61 0.58
47 31 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATTCGCAT
Found at i:84764645 original size:30 final size:30
Alignment explanation
Indices: 84764600--84764688 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
84764590 CAAAGATAAC
84764600 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
84764629 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
84764659 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
84764689 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:84764648 original size:15 final size:15
Alignment explanation
Indices: 84764600--84764679 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
84764590 CAAAGATAAC
*
84764600 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
84764614 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
84764629 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
84764644 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
84764659 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
84764674 AAGAAA
1 AAGAAA
84764680 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:84764688 original size:15 final size:15
Alignment explanation
Indices: 84764611--84764688 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
84764601 AGAAAACCGA
84764611 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
84764626 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
84764640 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
84764655 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
84764671 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
84764686 ATA
1 ATA
84764689 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:84766526 original size:40 final size:40
Alignment explanation
Indices: 84766480--84766664 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
84766470 CTTGCACAAG
* * *
84766480 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
84766520 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
84766560 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGTACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
84766600 TCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
84766641 GCCTTCGGGACTTAACCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
84766665 CATTCGAATA
Statistics
Matches: 118, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 91 0.77
41 26 0.22
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:84771094 original size:46 final size:43
Alignment explanation
Indices: 84770940--84771112 Score: 204
Period size: 46 Copynumber: 3.9 Consensus size: 43
84770930 ATGTAACCCG
* *
84770940 CCATAAGTGAACTCGACTCAACTCAACGAGCTCGGGTTCGCAT
1 CCATAAGTGAACTCGACTCAACTCAACGAGTTCGGATTCGCAT
*
84770983 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTT
1 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGGATTCGC-A--T
* ***
84771029 ACATCTCTCGAACTCGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGACTCAACTCAACGAGTTCGG--ATTCGCAT
84771075 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGGAT
84771113 GCCCAAATAT
Statistics
Matches: 109, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
43 15 0.14
44 25 0.23
45 6 0.06
46 52 0.48
47 6 0.06
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (43 bp):
CCATAAGTGAACTCGACTCAACTCAACGAGTTCGGATTCGCAT
Found at i:84771103 original size:92 final size:90
Alignment explanation
Indices: 84770948--84771115 Score: 300
Period size: 92 Copynumber: 1.8 Consensus size: 90
84770938 CGCCATAAGT
*
84770948 GAACTCGACTCAACTCAACGAGCTCGGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
1 GAACTCGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
84771013 GTTCGGATGCCTAGTTACATCTCTC
66 GTTCGGATGCCTAGTTACATCTCTC
*
84771038 GAACTCGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGACTCAACTCAACGAGCTCGG--ATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
84771103 GAGTTCGGATGCC
64 GAGTTCGGATGCC
84771116 CAAATATCCT
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
90 26 0.35
92 48 0.65
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (90 bp):
GAACTCGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
GTTCGGATGCCTAGTTACATCTCTC
Found at i:84772465 original size:29 final size:29
Alignment explanation
Indices: 84772432--84772494 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
84772422 CGAAACCATG
*
84772432 AATTTGAGATAGAAAACTTTATTGCGATT
1 AATTTGAGATAGAAAACTTTATTGCAATT
* *
84772461 AATTTTATATAGAAAACTTTATTGCAATT
1 AATTTGAGATAGAAAACTTTATTGCAATT
84772490 AATTT
1 AATTT
84772495 TATGATTTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.40, C:0.06, G:0.11, T:0.43
Consensus pattern (29 bp):
AATTTGAGATAGAAAACTTTATTGCAATT
Found at i:84772495 original size:29 final size:29
Alignment explanation
Indices: 84772440--84772497 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
84772430 TGAATTTGAG
*
84772440 ATAGAAAACTTTATTGCGATTAATTTTAT
1 ATAGAAAACTTTATTGCAATTAATTTTAT
84772469 ATAGAAAACTTTATTGCAATTAATTTTAT
1 ATAGAAAACTTTATTGCAATTAATTTTAT
84772498 GATTTACCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.45
Consensus pattern (29 bp):
ATAGAAAACTTTATTGCAATTAATTTTAT
Found at i:84774217 original size:80 final size:80
Alignment explanation
Indices: 84774133--84774281 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
84774123 TATGGTAACC
* * * *
84774133 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
84774197 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
84774213 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
84774278 CCGG
66 CCGG
84774282 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:84774223 original size:40 final size:38
Alignment explanation
Indices: 84774174--84774281 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
84774164 ATCACGATTT
*
84774174 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
84774214 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
84774254 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
84774282 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:84777070 original size:55 final size:53
Alignment explanation
Indices: 84776923--84777166 Score: 184
Period size: 55 Copynumber: 4.6 Consensus size: 53
84776913 ATTAGGGTTT
* * * * *
84776923 AAGGATACCATGAAAGACCGTGCCAAGGA-ATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAA-GACAT-GACATTGATAA-G-TTCATAAGGC
* * *
84776978 AAGGATATCATGTAAGTCCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGACATTGATAAGTT-C-ATAAGGC
* * *
84777033 AAAGG-TCCCATGTAAGACCATG-CTAAGGCATGACATTGGTAAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTC-AAGACATGACATTGATAAGTTCATAAGGC
* * *
84777086 AAGGATACCATGTAAGACCATGTCGAGACATGGA-AATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACAT-GACATTGATAAGTTCAT-AAGGC
* *
84777135 AAGGATACCATGTAAGACCATGACAAGTCATG
1 AAGGATACCATGTAAGACCATGTCAAGACATG
84777167 GCAATGGTAA
Statistics
Matches: 158, Mismatches: 21, Indels: 27
0.77 0.10 0.13
Matches are distributed among these distances:
48 1 0.01
49 28 0.18
51 1 0.01
52 8 0.05
53 40 0.25
54 15 0.09
55 61 0.39
56 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGACATTGATAAGTTCATAAGGC
Found at i:84777390 original size:16 final size:16
Alignment explanation
Indices: 84777369--84777399 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84777359 AAAAATTTGA
84777369 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
84777385 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
84777400 CGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:84787057 original size:29 final size:28
Alignment explanation
Indices: 84787025--84787127 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
84787015 GTGACGAGAT
* *
84787025 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
84787054 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
84787083 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
84787112 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
84787128 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:84792599 original size:31 final size:31
Alignment explanation
Indices: 84792561--84792624 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
84792551 CCTTTTCATA
84792561 TTTCATATTTCATAACACCGGGCCGAACCCT
1 TTTCATATTTCATAACACCGGGCCGAACCCT
** * *
84792592 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACCGGGCCGAACCCT
84792623 TT
1 TT
84792625 CGTTTAACGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATATTTCATAACACCGGGCCGAACCCT
Found at i:84792893 original size:26 final size:26
Alignment explanation
Indices: 84792835--84792971 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
84792825 CTGGAGGCCT
84792835 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
84792859 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
84792885 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*** *
84792911 AGCCCTTTTTGGTATACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
84792937 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
84792963 AGCCCTTTT
1 AGCCCTTTT
84792972 TCACTTCCTC
Statistics
Matches: 98, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 10 0.10
26 78 0.80
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:84792972 original size:52 final size:52
Alignment explanation
Indices: 84792835--84792972 Score: 228
Period size: 52 Copynumber: 2.7 Consensus size: 52
84792825 CTGGAGGCCT
*
84792835 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTTGGTAAACTGGGGCATA
*
84792885 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTTGGTATACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTTGGTAAACTGGGGCATA
84792937 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTT
84792973 CACTTCCTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
49 5 0.06
50 7 0.08
51 10 0.12
52 61 0.73
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (52 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTTGGTAAACTGGGGCATA
Found at i:84793046 original size:20 final size:20
Alignment explanation
Indices: 84793021--84793095 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
84793011 TTATGAATTC
*
84793021 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
84793041 ATCATGTGCATGTCATACAT
1 ATCATGTGCATATCATACAT
84793061 ATCATGTGCATATCATATCAT
1 ATCATGTGCATATCATA-CAT
84793082 -TCATGT--ATATCATA
1 ATCATGTGCATATCATA
84793096 TCCCATGTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
18 8 0.15
20 41 0.79
21 3 0.06
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:84796175 original size:55 final size:53
Alignment explanation
Indices: 84796107--84796361 Score: 209
Period size: 55 Copynumber: 4.8 Consensus size: 53
84796097 ATTAGGGTTT
*
84796107 AAGGATACCATGTAAGACCATGCCAAGGA-ATGGAAATTGGTCATGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAA-GACATGG-AATTGGT-AAGTTTCTAAGGC
* * ** * * *
84796162 AAGGATATCATGTAAGTCCATGTTAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * * *
84796217 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTAGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
* * * *
84796270 AAGGATACCTTGTAAGACCATGTCGAGACATGGAAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
** * *
84796319 AAGGATACCATGTAAGACCATGAAAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAG
84796362 GTACCCGTGT
Statistics
Matches: 161, Mismatches: 32, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
49 38 0.24
52 7 0.04
53 39 0.24
54 11 0.07
55 62 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:84796313 original size:108 final size:110
Alignment explanation
Indices: 84796114--84796314 Score: 264
Period size: 108 Copynumber: 1.8 Consensus size: 110
84796104 TTTAAGGATA
* * *
84796114 CCATGTAAGACCATGCCAAGGAATGGAAATTGGTCATGTTTCTAAGGCAAGGATATCATGTAAGT
1 CCATGTAAGACCATGCCAAGGAATGGAAATTAGTCATGTTTCTAAGGCAAGGATACCATGTAAGA
* * *
84796179 CCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
84796224 CCATGTAAGACCATGCCAAGGCATGG-CATTAGTGA-G-TTCATAAGGCAAGGATACCTTGTAAG
1 CCATGTAAGACCATGCCAAGGAATGGAAATTAGTCATGTTTC-TAAGGCAAGGATACCATGTAAG
* *
84796286 ACCATGTCGAGACATGGAAATGGTAAGTT
65 ACCATGTCAAGACATGGAAATGATAAGTT
84796315 TCAAAAGGAT
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
107 3 0.04
108 44 0.56
109 6 0.08
110 25 0.32
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGAATGGAAATTAGTCATGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:84797503 original size:39 final size:39
Alignment explanation
Indices: 84797460--84797558 Score: 171
Period size: 39 Copynumber: 2.5 Consensus size: 39
84797450 GAAATATAGT
84797460 TGAAGCACATAAGTGCTAAACGGAAGCCCGAAGGCTAAC
1 TGAAGCACATAAGTGCTAAACGGAAGCCCGAAGGCTAAC
* *
84797499 TGAAGCACATAAGTGCTAAATGGAAGCCCGGAGGCTAAC
1 TGAAGCACATAAGTGCTAAACGGAAGCCCGAAGGCTAAC
*
84797538 TGAAGTACATAAGTGCTAAAC
1 TGAAGCACATAAGTGCTAAAC
84797559 TGAAACCCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.16
Consensus pattern (39 bp):
TGAAGCACATAAGTGCTAAACGGAAGCCCGAAGGCTAAC
Found at i:84797525 original size:21 final size:21
Alignment explanation
Indices: 84797461--84797525 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 21
84797451 AAATATAGTT
*
84797461 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAATG
** *
84797482 GAAGC-CCGAAG-GCTAACT-
1 GAAGCACATAAGTGCTAAATG
84797500 GAAGCACATAAGTGCTAAATG
1 GAAGCACATAAGTGCTAAATG
84797521 GAAGC
1 GAAGC
84797526 CCGGAGGCTA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 5 0.15
19 9 0.26
20 10 0.29
21 10 0.29
ACGTcount: A:0.40, C:0.20, G:0.26, T:0.14
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAATG
Found at i:84800851 original size:46 final size:49
Alignment explanation
Indices: 84800787--84800964 Score: 166
Period size: 54 Copynumber: 3.5 Consensus size: 49
84800777 ACACACCGAA
* *
84800787 GCCATAGCCCA-ACCATGGTCTTACACGG-ATCACAT-ATCACA-CTGAT
1 GCCATAGCCCAGA-TATGGTCTTATACGGAATCACATAATCACATCTGAT
* * *
84800833 TCCATATCCCAGATATGGTCTTATACGGAAGCACATAATCACATATCTCTGAT
1 GCCATAGCCCAGATATGGTCTTATACGGAATCACATAATCAC--A--TCTGAT
* *
84800886 GCCATAGCCCAGCTATGGTCTTATACGGAAATCACATGATCACATCACATTGAT
1 GCCATAGCCCAGATATGGTCTTATACGG-AATCACATAATCACAT--C--TGAT
*
84800940 GCCATAGCCCAGCTATGGTCTTATA
1 GCCATAGCCCAGATATGGTCTTATA
84800965 TGAAAATCAG
Statistics
Matches: 109, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
46 22 0.20
47 7 0.06
48 5 0.05
50 2 0.02
52 2 0.02
53 30 0.28
54 41 0.38
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (49 bp):
GCCATAGCCCAGATATGGTCTTATACGGAATCACATAATCACATCTGAT
Found at i:84800897 original size:53 final size:55
Alignment explanation
Indices: 84800822--84800964 Score: 197
Period size: 54 Copynumber: 2.7 Consensus size: 55
84800812 CGGATCACAT
* * *
84800822 ATCACA-CTGATTCCATATCCCAGATATGGTCTTATACGG-AAGCACATAATCAC
1 ATCACATCTGATGCCATAGCCCAGCTATGGTCTTATACGGAAAGCACATAATCAC
* *
84800875 AT-ATC-TCTGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATGATCAC
1 ATCA-CATCTGATGCCATAGCCCAGCTATGGTCTTATACGGAAAGCACATAATCAC
84800929 ATCACAT-TGATGCCATAGCCCAGCTATGGTCTTATA
1 ATCACATCTGATGCCATAGCCCAGCTATGGTCTTATA
84800965 TGAAAATCAG
Statistics
Matches: 80, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
52 1 0.01
53 33 0.41
54 44 0.55
55 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (55 bp):
ATCACATCTGATGCCATAGCCCAGCTATGGTCTTATACGGAAAGCACATAATCAC
Found at i:84800945 original size:54 final size:53
Alignment explanation
Indices: 84800822--84800983 Score: 195
Period size: 54 Copynumber: 3.0 Consensus size: 53
84800812 CGGATCACAT
* * * * *
84800822 ATCACACTGATTCCATATCCCAGATATGGTCTTATACGG-AAGCACATAATCAC
1 ATCACATTGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACAT-ATCAC
84800875 AT-ATC-TCTGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATGATCAC
1 ATCA-CAT-TGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACAT-ATCAC
* * *
84800929 ATCACATTGATGCCATAGCCCAGCTATGGTCTTATATGAAAATCAGATATCAC
1 ATCACATTGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATATCAC
84800982 AT
1 AT
84800984 GTTGCCATGG
Statistics
Matches: 95, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
52 1 0.01
53 39 0.41
54 53 0.56
55 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (53 bp):
ATCACATTGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATATCAC
Found at i:84802313 original size:39 final size:39
Alignment explanation
Indices: 84802270--84802377 Score: 139
Period size: 39 Copynumber: 2.8 Consensus size: 39
84802260 CGAAATCTAG
84802270 CTGAAGCACATAAGTGCTAAATGGAAG-CCCGACGGCTAA
1 CTGAAGCACATAAGTGCTAAATGGAAGACCCGA-GGCTAA
* *
84802309 CTGAAGCACATAAGTGCTAAACGGAAGACCGGAGGCTAA
1 CTGAAGCACATAAGTGCTAAATGGAAGACCCGAGGCTAA
* * * *
84802348 TTGAAGCACTTGAGTGCTAAATTGAA-ACCC
1 CTGAAGCACATAAGTGCTAAATGGAAGACCC
84802378 CAAAAGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 3 0.05
39 53 0.88
40 4 0.07
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (39 bp):
CTGAAGCACATAAGTGCTAAATGGAAGACCCGAGGCTAA
Found at i:84804653 original size:40 final size:40
Alignment explanation
Indices: 84804591--84804847 Score: 230
Period size: 40 Copynumber: 6.5 Consensus size: 40
84804581 CGGATGATAA
* *
84804591 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATAT
* *
84804631 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
**
84804671 CCGGGCTAAGTCCCGAAGGTGTTTGTGCGA--GCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATAT
*
84804711 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
* *
84804749 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT--TACCATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATAT
* * *
84804790 CCGGGCTAAGTCCCAAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTAATAT
**
84804830 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84804848 TACTTGATTT
Statistics
Matches: 182, Mismatches: 21, Indels: 29
0.78 0.09 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 48 0.26
40 123 0.68
41 5 0.03
43 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
Found at i:84804794 original size:79 final size:80
Alignment explanation
Indices: 84804631--84804814 Score: 262
Period size: 79 Copynumber: 2.3 Consensus size: 80
84804621 GTGGCTAATT
* **
84804631 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGTGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* ** *
84804696 TGCGAGCTATTATAT
66 TGCAAGCTACCATAA
* *
84804711 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
84804775 TGCAAGTTACCATAA
66 TGCAAGCTACCATAA
*
84804790 CCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
84804815 AGCTAGTGGC
Statistics
Matches: 93, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 57 0.61
80 36 0.39
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACCATAA
Found at i:84804803 original size:119 final size:120
Alignment explanation
Indices: 84804591--84804808 Score: 305
Period size: 119 Copynumber: 1.8 Consensus size: 120
84804581 CGGATGATAA
* * *
84804591 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
* * * *
84804656 TGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGTGTTTGTGCGAGCTATTATAT
66 TGCAAGCTACCATAACCGGGCTAAGTCCCAAAGGTGTTTGTGCGAGCTATTATAT
* * * *
84804711 CCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAGA-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTC
*
84804774 GTGCAAGTTACCATAACCGGGCTAAGTCCCAAAGG
65 GTGCAAGCTACCATAACCGGGCTAAGTCCCAAAGG
84804809 CATTTGAGCT
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
119 57 0.67
120 28 0.33
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.24
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
TGCAAGCTACCATAACCGGGCTAAGTCCCAAAGGTGTTTGTGCGAGCTATTATAT
Found at i:84804829 original size:119 final size:120
Alignment explanation
Indices: 84804591--84804847 Score: 288
Period size: 119 Copynumber: 2.2 Consensus size: 120
84804581 CGGATGATAA
* * *
84804591 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAG-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTC
* * * * ** * *
84804655 GTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGTGTTTGTGCGAGCTATTATAT
65 GTGCAAGCTACCATAACCGGGCTAAGTCCCAAAGGCATTTGAGCGAGCTACTATAT
* * * *
84804711 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
* * *
84804775 TGCAAGTTACCATAACCGGGCTAAGTCCCAAAGGCATTTGAGCTAG-TGGCTATAT
66 TGCAAGCTACCATAACCGGGCTAAGTCCCAAAGGCATTTGAGCGAGCT-ACTATAT
**
84804830 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84804848 TACTTGATTT
Statistics
Matches: 115, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
118 15 0.13
119 71 0.62
120 27 0.23
121 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
TGCAAGCTACCATAACCGGGCTAAGTCCCAAAGGCATTTGAGCGAGCTACTATAT
Found at i:84804836 original size:79 final size:79
Alignment explanation
Indices: 84804631--84804847 Score: 258
Period size: 79 Copynumber: 2.7 Consensus size: 79
84804621 GTGGCTAATT
* **
84804631 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGTGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* ** *
84804696 TGCGAGCTATTATAT
65 TGCAAGCTACCATAA
*
84804711 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
84804775 TGCAAGTTACCATAA
65 TGCAAGCTACCATAA
* * * * **
84804790 CCGGGCTAAGTCCCAAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAAGTCCCGAAGG
84804848 TACTTGATTT
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
78 1 0.01
79 79 0.67
80 38 0.32
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACCATAA
Found at i:84807830 original size:14 final size:14
Alignment explanation
Indices: 84807811--84807839 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
84807801 GATATGACCT
84807811 ACGAAGAAGAATCG
1 ACGAAGAAGAATCG
84807825 ACGAAGAAGAATCG
1 ACGAAGAAGAATCG
84807839 A
1 A
84807840 TTCGCATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.28, T:0.07
Consensus pattern (14 bp):
ACGAAGAAGAATCG
Found at i:84818532 original size:30 final size:30
Alignment explanation
Indices: 84818477--84818607 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
84818467 ATAGTGAATC
*
84818477 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
84818506 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
84818536 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
84818564 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
84818594 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84818608 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:84818587 original size:58 final size:58
Alignment explanation
Indices: 84818476--84818607 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
84818466 TATAGTGAAT
* * * * *
84818476 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
84818535 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
84818593 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
84818608 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:84823482 original size:16 final size:16
Alignment explanation
Indices: 84823461--84823495 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
84823451 AAATGATGAG
84823461 TTATGATACCATGATA
1 TTATGATACCATGATA
84823477 TTATGATACCATGATA
1 TTATGATACCATGATA
84823493 TTA
1 TTA
84823496 ACTTAATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.40
Consensus pattern (16 bp):
TTATGATACCATGATA
Found at i:84824886 original size:22 final size:22
Alignment explanation
Indices: 84824859--84824933 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
84824849 AGTGCATATG
84824859 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * * *
84824881 TGTGATGAATG-TGAAAGTGCATATA
1 TGTGAT-AAGGCCGAATG-GC-CA-A
*
84824906 TGTGATAAGGCCTAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
84824928 TGTGAT
1 TGTGAT
84824934 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
22 17 0.44
23 6 0.15
24 6 0.15
25 10 0.26
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:84824902 original size:47 final size:47
Alignment explanation
Indices: 84824807--84825330 Score: 758
Period size: 47 Copynumber: 11.3 Consensus size: 47
84824797 ATGATATACA
* *
84824807 TATATGTGTGATAAGGCCTAATGGCC-ATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* *
84824853 CATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* *
84824900 CATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
84824947 CATATGTGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
84824994 TATATATGTGATAAGG-C------CCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
84825034 TATATATGGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
84825081 CATATGTGTGATAAGGCCGAACGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
84825128 TATATATGGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
84825175 CATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* *
84825222 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* *
84825269 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
84825316 TATAAATGTGATAAG
1 TATATATGTGATAAG
84825331 TCCCGAAGGG
Statistics
Matches: 430, Mismatches: 40, Indels: 15
0.89 0.08 0.03
Matches are distributed among these distances:
40 37 0.09
41 1 0.00
46 25 0.06
47 367 0.85
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:84834291 original size:12 final size:13
Alignment explanation
Indices: 84834274--84834311 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
84834264 ATCCTGGAAT
84834274 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
84834286 ATTAAGAACATATA
1 ATTAAGAACA-AGA
84834300 ATTAAGAACAAG
1 ATTAAGAACAAG
84834312 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.08, G:0.13, T:0.21
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:84837070 original size:13 final size:13
Alignment explanation
Indices: 84837052--84837076 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84837042 TGCTCTATTT
84837052 TCACACGACCGTA
1 TCACACGACCGTA
84837065 TCACACGACCGT
1 TCACACGACCGT
84837077 GTTGCCTCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.40, G:0.16, T:0.16
Consensus pattern (13 bp):
TCACACGACCGTA
Found at i:84845886 original size:13 final size:13
Alignment explanation
Indices: 84845868--84845892 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84845858 GTCGTGTGGT
84845868 TCGCACGGCCGTA
1 TCGCACGGCCGTA
84845881 TCGCACGGCCGT
1 TCGCACGGCCGT
84845893 GGCTAGTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.32, T:0.16
Consensus pattern (13 bp):
TCGCACGGCCGTA
Found at i:84850066 original size:26 final size:26
Alignment explanation
Indices: 84850037--84850091 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
84850027 GGTGGTTTAT
*
84850037 ATTCCTTTAGCACTGATTTTTCACTG
1 ATTCCCTTAGCACTGATTTTTCACTG
84850063 ATTCCCTTAGCACTGATTTTTCACTG
1 ATTCCCTTAGCACTGATTTTTCACTG
84850089 ATT
1 ATT
84850092 TTGGGTTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.20, C:0.24, G:0.11, T:0.45
Consensus pattern (26 bp):
ATTCCCTTAGCACTGATTTTTCACTG
Found at i:84851645 original size:14 final size:14
Alignment explanation
Indices: 84851626--84851652 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
84851616 AGAAGCAAAC
84851626 AAAAGAAAAATTAG
1 AAAAGAAAAATTAG
84851640 AAAAGAAAAATTA
1 AAAAGAAAAATTA
84851653 AACTAAAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (14 bp):
AAAAGAAAAATTAG
Found at i:84856362 original size:34 final size:35
Alignment explanation
Indices: 84856281--84856368 Score: 85
Period size: 34 Copynumber: 2.5 Consensus size: 35
84856271 ATGTGGAAAA
84856281 ATATTATACATATGTATAAAATACTAATATATATATAT
1 ATATTATA-ATAT-T-TAAAATACTAATATATATATAT
*
84856319 ATACT-TAATATTTAAGAATA-TAATATA-ATAT-T
1 ATATTATAATATTTAA-AATACTAATATATATATAT
*
84856351 ATTATTATAATAATTAAA
1 A-TATTATAATATTTAAA
84856369 GTAAATAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
32 2 0.05
33 8 0.18
34 19 0.43
35 5 0.11
36 4 0.09
37 2 0.05
38 4 0.09
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.43
Consensus pattern (35 bp):
ATATTATAATATTTAAAATACTAATATATATATAT
Found at i:84870534 original size:1 final size:1
Alignment explanation
Indices: 84870528--84870556 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
84870518 CGTCAATTCC
84870528 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
84870557 GAAACAGCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:84874388 original size:52 final size:50
Alignment explanation
Indices: 84874310--84874409 Score: 164
Period size: 50 Copynumber: 2.0 Consensus size: 50
84874300 TGATTGAAAC
*
84874310 GTACAATACCTAACCTACGCACAGAAAAAAACAAATCGTACACTAAGTATAT
1 GTACAATACCTAACCTACGCACAG--AAAAACAAAGCGTACACTAAGTATAT
*
84874362 GTACAATACCTAACTTACGCACAGAAAAACAAAGCGTACACTAAGTAT
1 GTACAATACCTAACCTACGCACAGAAAAACAAAGCGTACACTAAGTAT
84874410 GACTTAGTGG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
50 23 0.50
52 23 0.50
ACGTcount: A:0.47, C:0.23, G:0.11, T:0.19
Consensus pattern (50 bp):
GTACAATACCTAACCTACGCACAGAAAAACAAAGCGTACACTAAGTATAT
Found at i:84884377 original size:23 final size:23
Alignment explanation
Indices: 84884350--84884406 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
84884340 GACTTTTAAG
*
84884350 TCTTTTTATTTTCACTTTGTTTT
1 TCTTTTTATTTTCACTTTCTTTT
* **
84884373 TCTTTTTCTTTTCTTTTTCTTTT
1 TCTTTTTATTTTCACTTTCTTTT
*
84884396 TATTTTTATTT
1 TCTTTTTATTT
84884407 ATCATGTTCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.07, C:0.12, G:0.02, T:0.79
Consensus pattern (23 bp):
TCTTTTTATTTTCACTTTCTTTT
Found at i:84884378 original size:6 final size:6
Alignment explanation
Indices: 84884369--84884402 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
84884359 TTTCACTTTG
*
84884369 TTTTTC TTTTTC -TTTTC TTTTTC TTTTTA TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
84884403 ATTTATCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:84884384 original size:11 final size:11
Alignment explanation
Indices: 84884370--84884395 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
84884360 TTCACTTTGT
84884370 TTTTCTTTTTC
1 TTTTCTTTTTC
84884381 TTTTCTTTTTC
1 TTTTCTTTTTC
84884392 TTTT
1 TTTT
84884396 TATTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:84884389 original size:17 final size:17
Alignment explanation
Indices: 84884350--84884401 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
84884340 GACTTTTAAG
* * *
84884350 TCTTTTTATTTTCACTT
1 TCTTTTTCTTTTTATTT
* *
84884367 TGTTTTTCTTTTTCTTT
1 TCTTTTTCTTTTTATTT
84884384 TCTTTTTCTTTTTATTT
1 TCTTTTTCTTTTTATTT
84884401 T
1 T
84884402 TATTTATCAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.06, C:0.13, G:0.02, T:0.79
Consensus pattern (17 bp):
TCTTTTTCTTTTTATTT
Found at i:84887376 original size:20 final size:19
Alignment explanation
Indices: 84887353--84887399 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
84887343 TACTTTAACC
84887353 ATTTTCTTATTTTTACTTTA
1 ATTTTCTTATTTTT-CTTTA
* * *
84887373 ATTTACTAATTTTTCTTTT
1 ATTTTCTTATTTTTCTTTA
84887392 ATTTTCTT
1 ATTTTCTT
84887400 CTGGCAGGTT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.70
Consensus pattern (19 bp):
ATTTTCTTATTTTTCTTTA
Found at i:84888514 original size:15 final size:15
Alignment explanation
Indices: 84888494--84888524 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
84888484 AATGTAGGTT
84888494 AGAGGAACCATCCAA
1 AGAGGAACCATCCAA
*
84888509 AGAGGAGCCATCCAA
1 AGAGGAACCATCCAA
84888524 A
1 A
84888525 CTTCTCTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.26, G:0.23, T:0.06
Consensus pattern (15 bp):
AGAGGAACCATCCAA
Found at i:84890602 original size:22 final size:23
Alignment explanation
Indices: 84890575--84890620 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
84890565 ATCACCCCAA
* *
84890575 TTTTATTTTATTTATT-ATTAAT
1 TTTTATTTTACTAATTAATTAAT
84890597 TTTTATTTTACTAATTAATTAAT
1 TTTTATTTTACTAATTAATTAAT
84890620 T
1 T
84890621 AATTAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTTATTTTACTAATTAATTAAT
Found at i:84890664 original size:16 final size:16
Alignment explanation
Indices: 84890643--84890673 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
84890633 ATTCTTATAC
84890643 TTATATTTTTAATTTT
1 TTATATTTTTAATTTT
84890659 TTATATTTTTAATTT
1 TTATATTTTTAATTT
84890674 ATATATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATATTTTTAATTTT
Found at i:84890788 original size:3 final size:3
Alignment explanation
Indices: 84890780--84890839 Score: 113
Period size: 3 Copynumber: 20.3 Consensus size: 3
84890770 ATCATTGAGT
84890780 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
84890828 TTA TTA TT- TTA T
1 TTA TTA TTA TTA T
84890840 CTTTCTTTTT
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.04
3 54 0.96
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:84893943 original size:20 final size:19
Alignment explanation
Indices: 84893918--84893966 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
84893908 AAAATCAATA
84893918 TTCATGGTT-CAATCCACCAT
1 TTCAT-GTTCCAATCCA-CAT
*
84893938 TTCATGTTCCATTCCACAT
1 TTCATGTTCCAATCCACAT
84893957 TTCAT-TTCCA
1 TTCATGTTCCA
84893967 TTTCAGTATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 5 0.19
19 11 0.41
20 11 0.41
ACGTcount: A:0.22, C:0.31, G:0.06, T:0.41
Consensus pattern (19 bp):
TTCATGTTCCAATCCACAT
Found at i:84893957 original size:19 final size:19
Alignment explanation
Indices: 84893930--84893968 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
84893920 CATGGTTCAA
84893930 TCCACCATTTCATGTTCCAT
1 TCCACCATTTCAT-TTCCAT
84893950 TCCA-CATTTCATTTCCAT
1 TCCACCATTTCATTTCCAT
84893968 T
1 T
84893969 TCAGTATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.37
19 8 0.42
20 4 0.21
ACGTcount: A:0.21, C:0.33, G:0.03, T:0.44
Consensus pattern (19 bp):
TCCACCATTTCATTTCCAT
Found at i:84906862 original size:10 final size:10
Alignment explanation
Indices: 84906841--84906892 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
84906831 AATTAAAATC
84906841 TAAAAGATAAA
1 TAAAA-ATAAA
84906852 TAAAAATAAA
1 TAAAAATAAA
*
84906862 TAAAGAA-AAT
1 TAAA-AATAAA
*
84906872 TAAAGATAAA
1 TAAAAATAAA
*
84906882 TGAAAATAAA
1 TAAAAATAAA
84906892 T
1 T
84906893 TCTAAAATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
9 1 0.03
10 26 0.76
11 7 0.21
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (10 bp):
TAAAAATAAA
Found at i:84906875 original size:20 final size:20
Alignment explanation
Indices: 84906843--84906892 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
84906833 TTAAAATCTA
84906843 AAAGATAAATAAAAATAAAT
1 AAAGATAAATAAAAATAAAT
*
84906863 AAAGA-AAATTAAAGATAAAT
1 AAAGATAAA-TAAAAATAAAT
84906883 GAAA-ATAAAT
1 -AAAGATAAAT
84906893 TCTAAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 3 0.12
20 17 0.65
21 6 0.23
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (20 bp):
AAAGATAAATAAAAATAAAT
Found at i:84906927 original size:13 final size:12
Alignment explanation
Indices: 84906909--84906942 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
84906899 ATTAAATCTC
84906909 AATAATAATCCTT
1 AATAATAATCC-T
84906922 AATAATAATCCT
1 AATAATAATCCT
84906934 AAT-ATAATC
1 AATAATAATC
84906943 GGAATTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 6 0.29
12 4 0.19
13 11 0.52
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (12 bp):
AATAATAATCCT
Found at i:84907655 original size:95 final size:95
Alignment explanation
Indices: 84907549--84907734 Score: 291
Period size: 95 Copynumber: 2.0 Consensus size: 95
84907539 ATTAATTAAT
* ** * *
84907549 TAATTTATTTTTGCTTAGGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAACCAAGCACC
1 TAATTTATTTTTGCTTAAGAATATATCAAACCTTTTGACGCGAAAAGAGATGACAACCAAACACC
*
84907614 TTACCCCGGTTACTCAGCCCAACACACTCC
66 TCACCCCGGTTACTCAGCCCAACACACTCC
* * *
84907644 TAATTTTTTTTTTCTTAAGAATATATCAAACCTTTTGACGCGAAAAGAGATGACAGCCAAACACC
1 TAATTTATTTTTGCTTAAGAATATATCAAACCTTTTGACGCGAAAAGAGATGACAACCAAACACC
84907709 TCACCCCGGTTACTCAGCCCAACACA
66 TCACCCCGGTTACTCAGCCCAACACA
84907735 TTCTTAAAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
95 82 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.27
Consensus pattern (95 bp):
TAATTTATTTTTGCTTAAGAATATATCAAACCTTTTGACGCGAAAAGAGATGACAACCAAACACC
TCACCCCGGTTACTCAGCCCAACACACTCC
Found at i:84908895 original size:8 final size:7
Alignment explanation
Indices: 84908882--84908975 Score: 72
Period size: 8 Copynumber: 13.0 Consensus size: 7
84908872 ACCCAAACAA
84908882 AATAAAGT
1 AATAAA-T
84908890 AATAAAT
1 AATAAAT
84908897 AATAAAAT
1 AAT-AAAT
84908905 AAAATAAAGT
1 --AATAAA-T
*
84908915 AATGAAT
1 AATAAAT
84908922 AAATAAAT
1 -AATAAAT
84908930 AATAAAAT
1 AAT-AAAT
84908938 AATAAAAT
1 AAT-AAAT
84908946 AAT-AA-
1 AATAAAT
84908951 AATAAA-
1 AATAAAT
84908957 AATAAAT
1 AATAAAT
84908964 AA-AAAT
1 AATAAAT
84908970 AA-AAAT
1 AATAAAT
84908976 TGTGTTGCCT
Statistics
Matches: 76, Mismatches: 2, Indels: 18
0.79 0.02 0.19
Matches are distributed among these distances:
5 3 0.04
6 20 0.26
7 10 0.13
8 36 0.47
9 3 0.04
10 4 0.05
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (7 bp):
AATAAAT
Found at i:84908907 original size:5 final size:5
Alignment explanation
Indices: 84908897--84908973 Score: 52
Period size: 5 Copynumber: 14.4 Consensus size: 5
84908887 AGTAATAAAT
*
84908897 AATAA AATAA AATAA AGTAA TGAAT-A AATAAA TAATAA AATAA TAA-AA
1 AATAA AATAA AATAA AATAA --AATAA AAT-AA -AATAA AATAA -AATAA
84908945 TAATAA AATAA AA-ATA AATAAA AATAA AA
1 -AATAA AATAA AATA-A AAT-AA AATAA AA
84908974 ATTGTGTTGC
Statistics
Matches: 60, Mismatches: 2, Indels: 20
0.73 0.02 0.24
Matches are distributed among these distances:
4 4 0.07
5 38 0.63
6 12 0.20
7 6 0.10
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:84908938 original size:16 final size:16
Alignment explanation
Indices: 84908890--84908956 Score: 84
Period size: 16 Copynumber: 4.1 Consensus size: 16
84908880 AAAATAAAGT
84908890 AATAAATAATAAAATAA
1 AATAAATAATAAAAT-A
*
84908907 AATAAAGTAAT-GAATA
1 AATAAA-TAATAAAATA
84908923 AATAAATAATAAAAT-
1 AATAAATAATAAAATA
84908938 AATAAAATAATAAAATA
1 AAT-AAATAATAAAATA
84908955 AA
1 AA
84908957 AATAAATAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
15 7 0.16
16 22 0.50
17 11 0.25
18 4 0.09
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (16 bp):
AATAAATAATAAAATA
Found at i:84924945 original size:29 final size:31
Alignment explanation
Indices: 84924896--84924954 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
84924886 AATGTGTATC
* *
84924896 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATGTGGAGATAG
84924925 TATTTATTCTAATAGAT-AAATGTGGAGATA
1 TATTTATT-TAATAGATGAAATGTGGAGATA
84924955 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.37, C:0.02, G:0.20, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAG
Found at i:84936631 original size:27 final size:26
Alignment explanation
Indices: 84936583--84936642 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
84936573 GCGAAGCTGC
* *
84936583 CAGATATTGTGACGAAGTCACCGGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
84936610 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
84936636 CAGATAT
1 CAGATAT
84936643 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:84936737 original size:27 final size:26
Alignment explanation
Indices: 84936689--84936740 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
84936679 GCGAGGCTGC
*
84936689 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
84936715 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
84936741 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:84945358 original size:40 final size:39
Alignment explanation
Indices: 84945307--84945494 Score: 214
Period size: 40 Copynumber: 4.7 Consensus size: 39
84945297 TAAACCACAC
* * *
84945307 GCACGAATGCCTTCGGGTCTTAGTCCGGATATAACGACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAC-ACTA
* *
84945347 GCACAAATGCCTTCGGGTATTAGCCCGGATATAACAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAC-ACTA
* * *
84945387 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA-ACACTA
* * *
84945427 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAATACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT-AACACTA
* * *
84945467 GCATAAATGTCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
84945495 GTATCATTCA
Statistics
Matches: 126, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
40 124 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACACTA
Found at i:84945440 original size:80 final size:80
Alignment explanation
Indices: 84945307--84945494 Score: 236
Period size: 80 Copynumber: 2.4 Consensus size: 80
84945297 TAAACCACAC
* * *
84945307 GCACGAATGCCTTCGGGTCTTAGTCCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGCC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATGCCTTCGGGTATTAACC
*
84945372 CGGATATAACA-ACTT
66 CGGATATAA-ATACTA
* * * *
84945387 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAATGCCTTCGGGTATTAAC
84945451 CCGGATATAAATACTA
65 CCGGATATAAATACTA
** * *
84945467 GCATAAATGTCTTCGGGACTTAGCCCGG
1 GCACGAATGCCTTCGGGTCTTAGCCCGG
84945495 GTATCATTCA
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.01
80 92 0.98
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATGCCTTCGGGTATTAACC
CGGATATAAATACTA
Found at i:84952606 original size:40 final size:40
Alignment explanation
Indices: 84952508--84952693 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
84952498 TCGAATGATG
* * * *
84952508 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
84952548 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
84952588 TCTGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
84952628 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
84952669 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
84952694 AATGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:84960125 original size:28 final size:28
Alignment explanation
Indices: 84960081--84960211 Score: 199
Period size: 28 Copynumber: 4.7 Consensus size: 28
84960071 TCAAATATGG
*
84960081 CACTTAGTGTACAAAATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
* *
84960109 CAATTAGTGTACGAAATATTGAGAATGG
1 CACTTAGTGTACGAAATATTGAGAATGA
84960137 CACTTAGTGTACGAAATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
* *
84960165 CACTTAGTGTGCGAGATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
* *
84960193 CACTTAGTGTGCAAAATAT
1 CACTTAGTGTACGAAATAT
84960212 CGAATGATTC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 94 1.00
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.29
Consensus pattern (28 bp):
CACTTAGTGTACGAAATATTGAGAATGA
Found at i:84966396 original size:49 final size:48
Alignment explanation
Indices: 84966256--84966399 Score: 180
Period size: 49 Copynumber: 2.9 Consensus size: 48
84966246 TCTATTGTGA
*
84966256 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAACTTC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC-A-GACTTC
* * * * * * *
84966307 GATCACGTGTGTAGTACTAAGTGCAGGCTAGTACGTGTACCAGACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACT-TC
84966356 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
84966400 TAGCTTCGAC
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
48 3 0.04
49 40 0.51
50 2 0.03
51 33 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (48 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTTC
Found at i:84970149 original size:93 final size:93
Alignment explanation
Indices: 84970037--84970207 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
84970027 GCCCATAAGT
* *
84970037 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACAAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84970101 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
* *
84970130 GAACTCGGACTCAACTCAACAAGTTCGGACATTCTCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
84970195 CGAGTTCGGATGC
66 CGAGCTCGGATGC
84970208 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 70 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:84970201 original size:46 final size:45
Alignment explanation
Indices: 84970029--84970204 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
84970019 TGTAACCCGC
*
84970029 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CATTC-CAT
*
84970075 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCC-A--T
* *** * *
84970121 ACATCTCTCGAACTCGGACTCAACTCAACAAGTTCGGACATTCTCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTC-CAT
*
84970168 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
84970205 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.62
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCCAT
Found at i:84974388 original size:27 final size:27
Alignment explanation
Indices: 84974358--84974419 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
84974348 GGGCAAAATG
84974358 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
84974385 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
84974412 GTAATTTT
1 GTAATTTT
84974420 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:84974432 original size:27 final size:27
Alignment explanation
Indices: 84974399--84974478 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
84974389 TTTTACCCTA
* *
84974399 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
84974426 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
84974453 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
84974479 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:84974433 original size:54 final size:54
Alignment explanation
Indices: 84974374--84974500 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
84974364 TTACCCCACA
** *
84974374 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
84974427 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
84974482 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
84974501 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:84974486 original size:27 final size:28
Alignment explanation
Indices: 84974400--84974512 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
84974390 TTTACCCTAC
* * *
84974400 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
84974427 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
84974454 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
84974482 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
84974509 AGGG
1 AGGG
84974513 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:84974702 original size:81 final size:80
Alignment explanation
Indices: 84974465--84974703 Score: 298
Period size: 81 Copynumber: 3.0 Consensus size: 80
84974455 GGGGTATTTT
* * *** *
84974465 GGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGT
1 GGTAATTTTATAAATCGAGGGTAAAAC-GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
* * *
84974530 AAATCAAGAGAAAAAT
65 AAATCAAGGGTAAAAC
* * *
84974546 AGTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 GGTAATTTTATAAATCGAGGGTAAAACG-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
84974611 AAATCAAGGGTAAAAC
65 AAATCAAGGGTAAAAC
* * * *
84974627 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAT
1 GGTAATTTTATAAATCGAGGGTAAAAC-GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
*
84974692 AAATCGAGGGTA
65 AAATCAAGGGTA
84974704 TTTCAGTATT
Statistics
Matches: 136, Mismatches: 20, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 134 0.99
82 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (80 bp):
GGTAATTTTATAAATCGAGGGTAAAACGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
AATCAAGGGTAAAAC
Found at i:84974711 original size:54 final size:54
Alignment explanation
Indices: 84974465--84974703 Score: 282
Period size: 54 Copynumber: 4.4 Consensus size: 54
84974455 GGGGTATTTT
* * ** * * *
84974465 GGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
* * * * ** * *
84974519 AGTAATTCTGTAAATCAAGAGAAAAAT-AGTAATTCTATAAATCGACGGTAAAAC
1 GGTAATTTTATAAATCGAG-GGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
84974573 GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
*
84974627 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
84974681 GGTAATTTTATAAATCGAGGGTA
1 GGTAATTTTATAAATCGAGGGTA
84974704 TTTCAGTATT
Statistics
Matches: 155, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
53 4 0.03
54 148 0.95
55 3 0.02
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (54 bp):
GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:84974717 original size:27 final size:27
Alignment explanation
Indices: 84974466--84974703 Score: 244
Period size: 27 Copynumber: 8.8 Consensus size: 27
84974456 GGGTATTTTG
* * *** *
84974466 GTAATTTTACAAATTGAGGGTATTTCT
1 GTAATTTTATAAATCGAGGGTAAAACA
* *
84974493 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGTAAAACA
* * * * * *
84974520 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTTTATAAATCGAGGGTAAAACA
* *
84974547 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTTTATAAATCGAGGGTAAAACA
*
84974573 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTTTATAAATCGAGGGTAAAACA
* * * *
84974601 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACA
84974628 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAACA
* * *
84974655 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACA
84974682 GTAATTTTATAAATCGAGGGTA
1 GTAATTTTATAAATCGAGGGTA
84974704 TTTCAGTATT
Statistics
Matches: 176, Mismatches: 33, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 174 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAACA
Found at i:84974741 original size:81 final size:81
Alignment explanation
Indices: 84974466--84974730 Score: 246
Period size: 81 Copynumber: 3.3 Consensus size: 81
84974456 GGGTATTTTG
** *** * * * *
84974466 GTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTTTACAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
* * *
84974531 AATCAAGAGAAAAATA
66 AATCAAGGGTAAAACA
* * * * * *
84974547 GTAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 GTAATTTTACAAATCAAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTAT
*
84974611 AAATCAAGGGTAAAACG
65 AAATCAAGGGTAAAACA
* * * *
84974628 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATA
1 GTAATTTTACAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
* ***
84974693 AATCGAGGGTATTTCA
66 AATCAAGGGTAAAACA
*
84974709 GTATTTTTACAAA-CTAAGGGTA
1 GTAATTTTACAAATC-AAGGGTA
84974731 TTTCGGTAAT
Statistics
Matches: 155, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
80 2 0.01
81 152 0.98
82 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.32
Consensus pattern (81 bp):
GTAATTTTACAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
AATCAAGGGTAAAACA
Found at i:84974751 original size:28 final size:27
Alignment explanation
Indices: 84974680--84974753 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
84974670 GAGGGTAAAA
*
84974680 CGGTAATTTTATAAA-TCGAGGGTATTT
1 CGGTAATTTTATAAACT-AAGGGTATTT
* * *
84974707 CAGTATTTTTACAAACTAAGGGTATTT
1 CGGTAATTTTATAAACTAAGGGTATTT
84974734 CGGTAATTTTAGTAAACTAA
1 CGGTAATTTTA-TAAACTAA
84974754 AGTATTCTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
27 30 0.79
28 8 0.21
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (27 bp):
CGGTAATTTTATAAACTAAGGGTATTT
Found at i:84974758 original size:27 final size:27
Alignment explanation
Indices: 84974701--84974759 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
84974691 TAAATCGAGG
* *
84974701 GTATTTCAGTATTTTTACAAACTAAGG
1 GTATTTCAGTAATTTTACAAACTAAGA
* *
84974728 GTATTTCGGTAATTTTAGTAAACTAA-A
1 GTATTTCAGTAATTTTA-CAAACTAAGA
84974755 GTATT
1 GTATT
84974760 CTAAACATGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.42
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAACTAAGA
Found at i:84976422 original size:20 final size:20
Alignment explanation
Indices: 84976397--84976436 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
84976387 AGATAGTATT
84976397 TTCAAGTTTCTATTTTCACA
1 TTCAAGTTTCTATTTTCACA
84976417 TTCAAGTTTCTATTTTCACA
1 TTCAAGTTTCTATTTTCACA
84976437 GAATCATAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.20, G:0.05, T:0.50
Consensus pattern (20 bp):
TTCAAGTTTCTATTTTCACA
Found at i:84978637 original size:27 final size:27
Alignment explanation
Indices: 84978607--84978668 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
84978597 GGGCAAAATG
84978607 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
84978634 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
84978661 GTAATTTT
1 GTAATTTT
84978669 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:84978681 original size:27 final size:27
Alignment explanation
Indices: 84978648--84978727 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
84978638 TTTTACCCTA
* *
84978648 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
84978675 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
84978702 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
84978728 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:84978682 original size:54 final size:54
Alignment explanation
Indices: 84978623--84978749 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
84978613 TTACCCCACA
** *
84978623 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
84978676 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
84978731 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
84978750 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:84978735 original size:27 final size:28
Alignment explanation
Indices: 84978649--84978761 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
84978639 TTTACCCTAC
* * *
84978649 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
84978676 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
84978703 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
84978731 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
84978758 AGGG
1 AGGG
84978762 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:84978951 original size:81 final size:80
Alignment explanation
Indices: 84978714--84978952 Score: 298
Period size: 81 Copynumber: 3.0 Consensus size: 80
84978704 GGGGTATTTT
* * *** *
84978714 GGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGT
1 GGTAATTTTATAAATCGAGGGTAAAAC-GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
* * *
84978779 AAATCAAGAGAAAAAT
65 AAATCAAGGGTAAAAC
* * *
84978795 AGTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 GGTAATTTTATAAATCGAGGGTAAAACG-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
84978860 AAATCAAGGGTAAAAC
65 AAATCAAGGGTAAAAC
* * * *
84978876 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAT
1 GGTAATTTTATAAATCGAGGGTAAAAC-GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
*
84978941 AAATCGAGGGTA
65 AAATCAAGGGTA
84978953 TTTCAGTATT
Statistics
Matches: 136, Mismatches: 20, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 134 0.99
82 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (80 bp):
GGTAATTTTATAAATCGAGGGTAAAACGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
AATCAAGGGTAAAAC
Found at i:84978960 original size:54 final size:54
Alignment explanation
Indices: 84978714--84978952 Score: 282
Period size: 54 Copynumber: 4.4 Consensus size: 54
84978704 GGGGTATTTT
* * ** * * *
84978714 GGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
* * * * ** * *
84978768 AGTAATTCTGTAAATCAAGAGAAAAAT-AGTAATTCTATAAATCGACGGTAAAAC
1 GGTAATTTTATAAATCGAG-GGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
84978822 GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
*
84978876 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
84978930 GGTAATTTTATAAATCGAGGGTA
1 GGTAATTTTATAAATCGAGGGTA
84978953 TTTCAGTATT
Statistics
Matches: 155, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
53 4 0.03
54 148 0.95
55 3 0.02
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (54 bp):
GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:84978966 original size:27 final size:27
Alignment explanation
Indices: 84978715--84978952 Score: 244
Period size: 27 Copynumber: 8.8 Consensus size: 27
84978705 GGGTATTTTG
* * *** *
84978715 GTAATTTTACAAATTGAGGGTATTTCT
1 GTAATTTTATAAATCGAGGGTAAAACA
* *
84978742 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGTAAAACA
* * * * * *
84978769 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTTTATAAATCGAGGGTAAAACA
* *
84978796 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTTTATAAATCGAGGGTAAAACA
*
84978822 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTTTATAAATCGAGGGTAAAACA
* * * *
84978850 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACA
84978877 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAACA
* * *
84978904 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACA
84978931 GTAATTTTATAAATCGAGGGTA
1 GTAATTTTATAAATCGAGGGTA
84978953 TTTCAGTATT
Statistics
Matches: 176, Mismatches: 33, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 174 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAACA
Found at i:84978990 original size:81 final size:81
Alignment explanation
Indices: 84978715--84978979 Score: 246
Period size: 81 Copynumber: 3.3 Consensus size: 81
84978705 GGGTATTTTG
** *** * * * *
84978715 GTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTTTACAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
* * *
84978780 AATCAAGAGAAAAATA
66 AATCAAGGGTAAAACA
* * * * * *
84978796 GTAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 GTAATTTTACAAATCAAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTAT
*
84978860 AAATCAAGGGTAAAACG
65 AAATCAAGGGTAAAACA
* * * *
84978877 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATA
1 GTAATTTTACAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
* ***
84978942 AATCGAGGGTATTTCA
66 AATCAAGGGTAAAACA
*
84978958 GTATTTTTACAAA-CTAAGGGTA
1 GTAATTTTACAAATC-AAGGGTA
84978980 TTTCGGTAAT
Statistics
Matches: 155, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
80 2 0.01
81 152 0.98
82 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.32
Consensus pattern (81 bp):
GTAATTTTACAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
AATCAAGGGTAAAACA
Found at i:84979000 original size:28 final size:27
Alignment explanation
Indices: 84978929--84979002 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
84978919 GAGGGTAAAA
*
84978929 CGGTAATTTTATAAA-TCGAGGGTATTT
1 CGGTAATTTTATAAACT-AAGGGTATTT
* * *
84978956 CAGTATTTTTACAAACTAAGGGTATTT
1 CGGTAATTTTATAAACTAAGGGTATTT
84978983 CGGTAATTTTAGTAAACTAA
1 CGGTAATTTTA-TAAACTAA
84979003 AGTATTCTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
27 30 0.79
28 8 0.21
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (27 bp):
CGGTAATTTTATAAACTAAGGGTATTT
Found at i:84979007 original size:27 final size:27
Alignment explanation
Indices: 84978950--84979008 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
84978940 TAAATCGAGG
* *
84978950 GTATTTCAGTATTTTTACAAACTAAGG
1 GTATTTCAGTAATTTTACAAACTAAGA
* *
84978977 GTATTTCGGTAATTTTAGTAAACTAA-A
1 GTATTTCAGTAATTTTA-CAAACTAAGA
84979004 GTATT
1 GTATT
84979009 CTAAACATGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.42
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAACTAAGA
Found at i:84982865 original size:27 final size:27
Alignment explanation
Indices: 84982835--84982896 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
84982825 GGGCAAAATG
84982835 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
84982862 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
84982889 GTAATTTT
1 GTAATTTT
84982897 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:84982909 original size:27 final size:27
Alignment explanation
Indices: 84982876--84982955 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
84982866 TTTTACCCTA
* *
84982876 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
84982903 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
84982930 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
84982956 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:84982910 original size:54 final size:54
Alignment explanation
Indices: 84982851--84982977 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
84982841 TTACCCCACA
** *
84982851 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
84982904 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
84982959 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
84982978 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:84982963 original size:27 final size:28
Alignment explanation
Indices: 84982877--84982989 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
84982867 TTTACCCTAC
* * *
84982877 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
84982904 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
84982931 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
84982959 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
84982986 AGGG
1 AGGG
84982990 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:84983179 original size:81 final size:80
Alignment explanation
Indices: 84982942--84983180 Score: 298
Period size: 81 Copynumber: 3.0 Consensus size: 80
84982932 GGGGTATTTT
* * *** *
84982942 GGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGT
1 GGTAATTTTATAAATCGAGGGTAAAAC-GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
* * *
84983007 AAATCAAGAGAAAAAT
65 AAATCAAGGGTAAAAC
* * *
84983023 AGTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 GGTAATTTTATAAATCGAGGGTAAAACG-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
84983088 AAATCAAGGGTAAAAC
65 AAATCAAGGGTAAAAC
* * * *
84983104 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAT
1 GGTAATTTTATAAATCGAGGGTAAAAC-GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
*
84983169 AAATCGAGGGTA
65 AAATCAAGGGTA
84983181 TTTCAGTATT
Statistics
Matches: 136, Mismatches: 20, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 134 0.99
82 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (80 bp):
GGTAATTTTATAAATCGAGGGTAAAACGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
AATCAAGGGTAAAAC
Found at i:84983188 original size:54 final size:54
Alignment explanation
Indices: 84982942--84983180 Score: 282
Period size: 54 Copynumber: 4.4 Consensus size: 54
84982932 GGGGTATTTT
* * ** * * *
84982942 GGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
* * * * ** * *
84982996 AGTAATTCTGTAAATCAAGAGAAAAAT-AGTAATTCTATAAATCGACGGTAAAAC
1 GGTAATTTTATAAATCGAG-GGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
84983050 GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
*
84983104 GGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
84983158 GGTAATTTTATAAATCGAGGGTA
1 GGTAATTTTATAAATCGAGGGTA
84983181 TTTCAGTATT
Statistics
Matches: 155, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
53 4 0.03
54 148 0.95
55 3 0.02
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (54 bp):
GGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAAC
Done.