Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 281 of 770
Found at i:85383604 original size:27 final size:27
Alignment explanation
Indices: 85383546--85383604 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
85383536 ACTGTATTAA
*
85383546 ACTGGTGGCTTCGCCATATATACTATT
1 ACTGGTGGCTTCGCCACATATACTATT
* * *
85383573 TCTGGTGGCTTTGCCACATATACTGTT
1 ACTGGTGGCTTCGCCACATATACTATT
85383600 ACTGG
1 ACTGG
85383605 CAGCTTTACT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
ACTGGTGGCTTCGCCACATATACTATT
Found at i:85383610 original size:27 final size:27
Alignment explanation
Indices: 85383553--85383611 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
85383543 TAAACTGGTG
* * * **
85383553 GCTTCGCCATATATACTATTTCTGGTG
1 GCTTTGCCACATATACTATTACTGGCA
*
85383580 GCTTTGCCACATATACTGTTACTGGCA
1 GCTTTGCCACATATACTATTACTGGCA
85383607 GCTTT
1 GCTTT
85383612 ACTGCGATAC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.39
Consensus pattern (27 bp):
GCTTTGCCACATATACTATTACTGGCA
Found at i:85387517 original size:26 final size:26
Alignment explanation
Indices: 85387485--85387545 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
85387475 TTTGCCACAT
* * * *
85387485 ATACTGTTATTGGCAGCTTTGCTGTG
1 ATACTGTTATCGGCAACTTTACTGCG
*
85387511 ATACTGTTATCGGCAACTTTATTGCG
1 ATACTGTTATCGGCAACTTTACTGCG
85387537 ATACTGTTA
1 ATACTGTTA
85387546 GTAGCAGGCT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.41
Consensus pattern (26 bp):
ATACTGTTATCGGCAACTTTACTGCG
Found at i:85389404 original size:40 final size:40
Alignment explanation
Indices: 85389296--85389505 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
85389286 CGGGATTTAA
* * * * *
85389296 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
85389336 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85389376 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85389416 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85389456 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85389496 CCGGATATAT
1 CCGGATATAT
85389506 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:85397470 original size:40 final size:40
Alignment explanation
Indices: 85397362--85397571 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
85397352 CGGGATTTAA
* * * * *
85397362 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
85397402 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85397442 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85397482 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85397522 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85397562 CCGGATATAT
1 CCGGATATAT
85397572 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:85402473 original size:27 final size:27
Alignment explanation
Indices: 85402443--85402496 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
85402433 ATGACTAAAA
*
85402443 TACCCCTATAGGGTAAAATGACT-ATTT
1 TACCCCTAGAGGGT-AAATGACTGATTT
*
85402470 TACCCCTCGAGGGTAAATGACTGATTT
1 TACCCCTAGAGGGTAAATGACTGATTT
85402497 GTGCTATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAATGACTGATTT
Found at i:85402666 original size:27 final size:27
Alignment explanation
Indices: 85402611--85402669 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
85402601 ATACTGGTGT
* **
85402611 CTTTGCCACATATACTATTTCTGGTAG
1 CTTTGCCACATATACTATTACTGACAG
*
85402638 CTTTGCCACATATACTGTTACTGACAG
1 CTTTGCCACATATACTATTACTGACAG
85402665 CTTTG
1 CTTTG
85402670 ATGTGATACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (27 bp):
CTTTGCCACATATACTATTACTGACAG
Found at i:85402704 original size:26 final size:26
Alignment explanation
Indices: 85402622--85402724 Score: 89
Period size: 26 Copynumber: 3.9 Consensus size: 26
85402612 TTTGCCACAT
* * **
85402622 ATACTATTTCTGGTAGCTTTGCCACA
1 ATACTATTACTGGCAGCTTTGCTGCA
* * * **
85402648 TATACTGTTACTGACAGCTTTGATGTG
1 -ATACTATTACTGGCAGCTTTGCTGCA
*
85402675 ATACTATTATTGGCAGCTTTGCTGCA
1 ATACTATTACTGGCAGCTTTGCTGCA
* *
85402701 ATACTGTTACTGGCAGCATTGCTG
1 ATACTATTACTGGCAGCTTTGCTG
85402725 GGATATTGGT
Statistics
Matches: 58, Mismatches: 18, Indels: 1
0.75 0.23 0.01
Matches are distributed among these distances:
26 41 0.71
27 17 0.29
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.38
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCA
Found at i:85403908 original size:17 final size:18
Alignment explanation
Indices: 85403886--85403919 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
85403876 CACATTGAAA
85403886 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
85403903 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
85403920 CTTAAAAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:85404986 original size:29 final size:29
Alignment explanation
Indices: 85404910--85405005 Score: 115
Period size: 29 Copynumber: 3.3 Consensus size: 29
85404900 CAAGTCTACA
* *
85404910 TACATGCATATGGCCCACTAGGCCC-AAT
1 TACATTCATATGGCCCATTAGGCCCAAAT
85404938 CT-CATTCATATGGCCCATTAGGCCCAAAT
1 -TACATTCATATGGCCCATTAGGCCCAAAT
* * *
85404967 TACATTCGTATGGCCTATTAGGCCTAAAT
1 TACATTCATATGGCCCATTAGGCCCAAAT
*
85404996 CACATTCATA
1 TACATTCATA
85405006 GTCATGCTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
28 22 0.38
29 36 0.62
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
TACATTCATATGGCCCATTAGGCCCAAAT
Found at i:85412425 original size:29 final size:29
Alignment explanation
Indices: 85412393--85412488 Score: 156
Period size: 29 Copynumber: 3.3 Consensus size: 29
85412383 AAGTCTACAT
*
85412393 ACATGCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
85412422 ACATTCGTATGGCCCATTAGGCCAAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
85412451 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
85412480 ACATTCATA
1 ACATTCATA
85412489 GTCATGCTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:85412722 original size:16 final size:16
Alignment explanation
Indices: 85412701--85412732 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
85412691 CCAAACTTCT
*
85412701 GGCTTTTCGGCATTTC
1 GGCTTTTCAGCATTTC
85412717 GGCTTTTCAGCATTTC
1 GGCTTTTCAGCATTTC
85412733 AGGATTTGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.25, G:0.22, T:0.44
Consensus pattern (16 bp):
GGCTTTTCAGCATTTC
Found at i:85416534 original size:29 final size:29
Alignment explanation
Indices: 85416497--85416586 Score: 130
Period size: 29 Copynumber: 3.1 Consensus size: 29
85416487 AATTATATTC
85416497 ATATGGCCCATTAGGCCCAAATCAC-TTGT
1 ATATGGCCCATTAGGCCCAAATCACATT-T
85416526 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATTT
* * *
85416555 ATATGGCCCGTTAGGCCC-AGTCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTT
85416583 ATAT
1 ATAT
85416587 TCTTGCTCAC
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
28 12 0.21
29 43 0.75
30 2 0.04
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTT
Found at i:85420533 original size:39 final size:39
Alignment explanation
Indices: 85420479--85420553 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
85420469 GTCGTAGGTG
* *
85420479 GATCCACGATTGTCAGGCAACCATGCGATCCCCATAATA
1 GATCCACGATTGTCAGGCAACCATACAATCCCCATAATA
85420518 GATCCACGATTGTCAGGCAACCATACAATCCCCATA
1 GATCCACGATTGTCAGGCAACCATACAATCCCCATA
85420554 TACTTCTTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.20
Consensus pattern (39 bp):
GATCCACGATTGTCAGGCAACCATACAATCCCCATAATA
Found at i:85421036 original size:29 final size:29
Alignment explanation
Indices: 85421004--85421080 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
85420994 AATCATATTC
*
85421004 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
85421033 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
**
85421062 ATATGGCCTGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
85421081 GTCACATTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:85423729 original size:27 final size:27
Alignment explanation
Indices: 85423680--85423789 Score: 130
Period size: 27 Copynumber: 4.1 Consensus size: 27
85423670 ATCTCATATC
* * *
85423680 TGTAGGCTAGCATTACTAAAATACCCG
1 TGTAGGGTAGAATTACTAAAATACCCT
* *
85423707 TGCAGGGTAGAATTACTGAAATACCCT
1 TGTAGGGTAGAATTACTAAAATACCCT
* * *
85423734 TTTAGGGTAGAATTACTGAAATGCCCT
1 TGTAGGGTAGAATTACTAAAATACCCT
* *
85423761 TGTAGGGCAGAATTACCAAAATACCCT
1 TGTAGGGTAGAATTACTAAAATACCCT
85423788 TG
1 TG
85423790 GTTTACAAAA
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTAAAATACCCT
Found at i:85423801 original size:27 final size:27
Alignment explanation
Indices: 85423771--85423921 Score: 153
Period size: 27 Copynumber: 5.6 Consensus size: 27
85423761 TGTAGGGCAG
**
85423771 AATTACCAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTGTAA
*
85423798 AATTACGAAAATAACCC-TGGTTTGTAA
1 AATTACCAAAAT-ACCCTTGGTTTGTAA
85423825 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* * * *
85423852 AAGTACCAAAATACCCCTGATTTGTGA
1 AATTACCAAAATACCCTTGGTTTGTAA
** * * *
85423879 AATTACTGAAACACCCTCGACTTT-TAA
1 AATTACCAAAATACCCTTG-GTTTGTAA
*
85423906 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
85423922 CCGATTTACA
Statistics
Matches: 101, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
26 4 0.04
27 90 0.89
28 7 0.07
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:85423876 original size:54 final size:53
Alignment explanation
Indices: 85423771--85423928 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 53
85423761 TGTAGGGCAG
* * * *
85423771 AATTACCAAAATACCCTTGGTTTACAAAATTACGAAAATAACCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTT-TAAAATTACCAAAATACCCCTGATTTGTAA
* *
85423825 AATTACCAAAATACCCTTGGTTTGTAAAAGTACCAAAATACCCCTGATTTGTGA
1 AATTACCAAAATACCCTTGGTTT-TAAAATTACCAAAATACCCCTGATTTGTAA
** * * * * *
85423879 AATTACTGAAACACCCTCGACTTTTAAAATTACCAAAGTACCCCCGATTT
1 AATTACCAAAATACCCTTG-GTTTTAAAATTACCAAAATACCCCTGATTT
85423929 ACAGAATTAC
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
54 85 0.97
55 3 0.03
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (53 bp):
AATTACCAAAATACCCTTGGTTTTAAAATTACCAAAATACCCCTGATTTGTAA
Found at i:85423990 original size:27 final size:27
Alignment explanation
Indices: 85423960--85424152 Score: 260
Period size: 27 Copynumber: 7.1 Consensus size: 27
85423950 TGATTTACAA
* *
85423960 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
85423987 AATTACTGAAATACCCTTGTCGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
85424014 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
85424041 AGTTACTGAAACACCCTTGTAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
85424068 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
85424095 AATTATTGAAATACCATTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * *
85424122 AAATACTAAAATAACCTTGTAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
85424149 AATT
1 AATT
85424153 CCAAGATACC
Statistics
Matches: 143, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:85424972 original size:6 final size:6
Alignment explanation
Indices: 85424963--85425095 Score: 78
Period size: 6 Copynumber: 21.5 Consensus size: 6
85424953 TTGCATTCAC
* * *
85424963 ATTCTG ATTCTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTTTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG AT--TCTG
* * * *
85425013 ATCCTG ATTCTG ATTTTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
85425062 ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATT
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATT
85425096 GTCATTTTTA
Statistics
Matches: 99, Mismatches: 14, Indels: 28
0.70 0.10 0.20
Matches are distributed among these distances:
5 6 0.06
6 78 0.79
7 10 0.10
8 4 0.04
9 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:85424998 original size:31 final size:31
Alignment explanation
Indices: 85424963--85425095 Score: 155
Period size: 31 Copynumber: 4.3 Consensus size: 31
85424953 TTGCATTCAC
*
85424963 ATTCTGATTCTGATTCTGTTACCTGATAT-TG
1 ATTCTGATTCTGATTCTGTCACCTGAT-TCTG
* ** *
85424994 ATTCTGATTTTG--TCACCTAATCCTGATTCTG
1 ATTCTGATTCTGATTC-TGTCA-CCTGATTCTG
*
85425025 ATTTTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
*
85425056 ATTTTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
85425087 ATTCTGATT
1 ATTCTGATT
85425096 GTCATTTTTA
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
29 2 0.02
30 3 0.03
31 78 0.90
32 2 0.02
33 2 0.02
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATTCTG
Found at i:85425028 original size:25 final size:25
Alignment explanation
Indices: 85424966--85425030 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
85424956 CATTCACATT
* * *
85424966 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTTTGTCACCTAATA
* *
85424991 TTGATTCTGATTTTGTCACCTAATC
1 CTGATTCTGATTTTGTCACCTAATA
85425016 CTGATTCTGATTTTG
1 CTGATTCTGATTTTG
85425031 ATTCTGATTC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTTTGTCACCTAATA
Found at i:85425035 original size:37 final size:36
Alignment explanation
Indices: 85424985--85425095 Score: 142
Period size: 37 Copynumber: 3.2 Consensus size: 36
85424975 ATTCTGTTAC
* *
85424985 CTGATATTGATTCTGATTTTGTCACCTAATCCTGATT
1 CTGATTTTGATTCTGATTCTGTCACCT-ATCCTGATT
85425022 CTGATTTTGATTCTGATTCTGT---C-A-CCTGATT
1 CTGATTTTGATTCTGATTCTGTCACCTATCCTGATT
*
85425053 CTGATTTTGATTCTGATTCTGTCACCTGATTCTGATT
1 CTGATTTTGATTCTGATTCTGTCACCT-ATCCTGATT
85425090 CTGATT
1 CTGATT
85425096 GTCATTTTTA
Statistics
Matches: 65, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
31 29 0.45
32 1 0.02
34 2 0.03
36 1 0.02
37 32 0.49
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (36 bp):
CTGATTTTGATTCTGATTCTGTCACCTATCCTGATT
Found at i:85426983 original size:27 final size:27
Alignment explanation
Indices: 85426953--85427049 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
85426943 AATCTCATAT
* * *
85426953 CTGTAGGCTAGCATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTAAAATACCC
85426980 CTGTAGGGTAGAATTACTAAAATACCC
1 CTGTAGGGTAGAATTACTAAAATACCC
* * *
85427007 TTCTAGGGTAGAATTACTAAAATGCCC
1 CTGTAGGGTAGAATTACTAAAATACCC
85427034 CTGTAGGGTAGAATTA
1 CTGTAGGGTAGAATTA
85427050 ACATAATACC
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTAAAATACCC
Found at i:85427084 original size:27 final size:27
Alignment explanation
Indices: 85427045--85427140 Score: 111
Period size: 27 Copynumber: 3.6 Consensus size: 27
85427035 TGTAGGGTAG
* * * **
85427045 AATTAACATAATACCTTTAGTTTACAA
1 AATTACCAAAATACCATTAGTTTGTAA
* **
85427072 AATTGCCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCATTAGTTTGTAA
*
85427099 AATTACCAAAATACCATTGGTTTGTAA
1 AATTACCAAAATACCATTAGTTTGTAA
85427126 AATTACCAAAATACC
1 AATTACCAAAATACC
85427141 CCTGATTTAT
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCATTAGTTTGTAA
Found at i:85427155 original size:27 final size:27
Alignment explanation
Indices: 85427065--85427186 Score: 102
Period size: 27 Copynumber: 4.5 Consensus size: 27
85427055 ATACCTTTAG
* *
85427065 TTTACAAAATTGCCAAAATACCCCT-A
1 TTTATAAAATTACCAAAATACCCCTGA
* ** *
85427091 GTTTGTAAAATTACCAAAATACCATTGG
1 -TTTATAAAATTACCAAAATACCCCTGA
*
85427119 TTTGTAAAATTACCAAAATACCCCTGA
1 TTTATAAAATTACCAAAATACCCCTGA
* ** * *
85427146 TTTATGAAATTACTGAAGTACCCCCGA
1 TTTATAAAATTACCAAAATACCCCTGA
* *
85427173 TTTACAGAATTACC
1 TTTATAAAATTACC
85427187 GTTTTACCTT
Statistics
Matches: 75, Mismatches: 19, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCCTGA
Found at i:85427448 original size:27 final size:27
Alignment explanation
Indices: 85427207--85427438 Score: 302
Period size: 27 Copynumber: 8.6 Consensus size: 27
85427197 CGATTTACAA
* *
85427207 AATTATTGAAATACCCCTGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
85427234 AATTATTAAAATACACCTGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
85427261 AATTACTAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
85427288 AGTTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
85427315 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
85427342 AATTACTAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
85427369 AATTACTGAAATACCCTTGCAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
85427396 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
85427423 AATTACCGAGATACCC
1 AATTACTGAAATACCC
85427439 TTCTGGGGTA
Statistics
Matches: 181, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 181 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:85428132 original size:6 final size:6
Alignment explanation
Indices: 85428123--85428196 Score: 53
Period size: 6 Copynumber: 12.0 Consensus size: 6
85428113 TTGCATTCAC
* * * *
85428123 ATTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
85428173 ATTTTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG
85428197 TCACCTGATT
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
5 3 0.06
6 42 0.81
7 5 0.10
8 2 0.04
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:85428186 original size:31 final size:31
Alignment explanation
Indices: 85428145--85428220 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 31
85428135 ATTCTGTTAC
*
85428145 CTGATACTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATT
* *
85428176 TTGATTCTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATT
* *
85428207 CTCATTTTGATTCT
1 CTGATTCTGATTCT
85428221 AGTTCTGATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.18, C:0.21, G:0.13, T:0.47
Consensus pattern (31 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATT
Found at i:85428205 original size:25 final size:25
Alignment explanation
Indices: 85428123--85428220 Score: 97
Period size: 25 Copynumber: 3.7 Consensus size: 25
85428113 TTGCATTCAC
* *
85428123 ATTCTGATTCTAATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
*
85428148 ATACTGATTCTGATTCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGTCACC------TG
85428179 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
* *
85428204 ATTCTCATTTTGATTCT
1 ATTCTGATTCTGATTCT
85428221 AGTTCTGATA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
25 37 0.61
31 24 0.39
ACGTcount: A:0.19, C:0.20, G:0.12, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:85429164 original size:19 final size:19
Alignment explanation
Indices: 85429140--85429179 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
85429130 AGAAAATTTT
85429140 CTTATTTTGGAGGGTCACA
1 CTTATTTTGGAGGGTCACA
85429159 CTTATTTTGGAGGGTCACA
1 CTTATTTTGGAGGGTCACA
85429178 CT
1 CT
85429180 CTCGTGTGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.38
Consensus pattern (19 bp):
CTTATTTTGGAGGGTCACA
Found at i:85437304 original size:20 final size:19
Alignment explanation
Indices: 85437230--85437307 Score: 61
Period size: 20 Copynumber: 3.9 Consensus size: 19
85437220 TTGTACGGGA
*
85437230 TTGCACTTCAGTGCCTTTAT
1 TTGCACTT-AGTGCCTCTAT
*
85437250 TTGCACTTAAGCGCCTCTGA-
1 TTGCACTT-AGTGCCTCT-AT
*
85437270 TTACACATTTA-TGCCTCTAT
1 TTGCAC--TTAGTGCCTCTAT
85437290 TTGCACTTAGGTGCCTCT
1 TTGCACTTA-GTGCCTCT
85437308 GTTATGCATC
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
18 3 0.07
19 1 0.02
20 38 0.83
21 2 0.04
22 2 0.04
ACGTcount: A:0.18, C:0.27, G:0.15, T:0.40
Consensus pattern (19 bp):
TTGCACTTAGTGCCTCTAT
Found at i:85439664 original size:29 final size:29
Alignment explanation
Indices: 85439605--85439703 Score: 159
Period size: 29 Copynumber: 3.5 Consensus size: 29
85439595 ACAGTAAGTC
*
85439605 CGCACACTTAGTACT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
85439633 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
85439662 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
85439690 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85439704 CAATCTCATT
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
28 33 0.49
29 34 0.50
30 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:85440827 original size:17 final size:18
Alignment explanation
Indices: 85440790--85440827 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
85440780 CACTTTTTTT
85440790 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
85440809 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
85440826 TT
1 TT
85440828 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:85442138 original size:22 final size:22
Alignment explanation
Indices: 85442065--85442138 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
85442055 AACATGCCAT
*
85442065 TTGTAGACAAGCCACCACATAA
1 TTGTGGACAAGCCACCACATAA
* * *
85442087 TTGTGGATAAATGGCCACATAACA-CA
1 TTGTGGA-CAA--GCCAC--CACATAA
85442113 TTGTGGACAAGCCACCACATAA
1 TTGTGGACAAGCCACCACATAA
85442135 TTGT
1 TTGT
85442139 CAATAACAGC
Statistics
Matches: 39, Mismatches: 7, Indels: 12
0.67 0.12 0.21
Matches are distributed among these distances:
21 3 0.08
22 11 0.28
23 7 0.18
25 7 0.18
26 8 0.21
27 3 0.08
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (22 bp):
TTGTGGACAAGCCACCACATAA
Found at i:85445331 original size:33 final size:33
Alignment explanation
Indices: 85445293--85445356 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
85445283 ATAACACAGT
85445293 AGCCTTATTCAGTAACAGTAAAGTCTGGGCCAA
1 AGCCTTATTCAGTAACAGTAAAGTCTGGGCCAA
85445326 AGCCTTATTCAGTAACAGTAAAGTCTGGGCC
1 AGCCTTATTCAGTAACAGTAAAGTCTGGGCC
85445357 TTAGCCCTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (33 bp):
AGCCTTATTCAGTAACAGTAAAGTCTGGGCCAA
Found at i:85445489 original size:30 final size:30
Alignment explanation
Indices: 85445407--85445489 Score: 96
Period size: 31 Copynumber: 2.7 Consensus size: 30
85445397 TCAATCTCGA
*
85445407 CATAT-ACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGAGC-GAAGCCTTTTCATAAAT
* *
85445437 CATATCACTGGGCCATAGCCTTTTCATAAAT
1 CATATCACTGAGCGA-AGCCTTTTCATAAAT
* *
85445468 CATGTCACTGATCGAAGCCTTT
1 CATATCACTGAGCGAAGCCTTT
85445490 ACTGTAAGCG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
30 13 0.28
31 33 0.72
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.33
Consensus pattern (30 bp):
CATATCACTGAGCGAAGCCTTTTCATAAAT
Found at i:85447376 original size:27 final size:28
Alignment explanation
Indices: 85447320--85447389 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
85447310 AAATTTGTAC
85447320 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
85447348 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
85447375 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85447390 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:85447400 original size:27 final size:27
Alignment explanation
Indices: 85447320--85447401 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
85447310 AAATTTGTAC
* *
85447320 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
85447348 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
85447375 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
85447402 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:85451150 original size:51 final size:51
Alignment explanation
Indices: 85451090--85451293 Score: 340
Period size: 51 Copynumber: 4.0 Consensus size: 51
85451080 TATGTATGAG
* *
85451090 ATGTATATATGTGATACGGCCAAATGGCCAATGTGATGAATGTGAAAGTGT
1 ATGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
*
85451141 ATGTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
1 ATGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
*
85451192 ATATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
1 ATGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
* *
85451243 A--TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGT
1 ATGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
85451292 AT
1 AT
85451294 ATATGTTATG
Statistics
Matches: 147, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
49 47 0.32
51 100 0.68
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.30
Consensus pattern (51 bp):
ATGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
Found at i:85451281 original size:100 final size:101
Alignment explanation
Indices: 85451093--85451297 Score: 349
Period size: 100 Copynumber: 2.0 Consensus size: 101
85451083 GTATGAGATG
* * *
85451093 TATATATGTGATACGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATATGTGATAC
1 TATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTA-GTATACATGTGATAA
*
85451158 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
65 GGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATA
*
85451195 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA-TATACATGTGATAAG
1 TATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTAGTATACATGTGATAAG
85451259 GCCTAATGGCCAATGTGATGAATGTGAAAGAGTATA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGAGTATA
85451295 TAT
1 TAT
85451298 GTTATGATTT
Statistics
Matches: 98, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
100 51 0.52
102 47 0.48
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30
Consensus pattern (101 bp):
TATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTAGTATACATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGAGTATA
Found at i:85452956 original size:40 final size:40
Alignment explanation
Indices: 85452910--85453169 Score: 228
Period size: 40 Copynumber: 6.5 Consensus size: 40
85452900 TGAATGATAC
**
85452910 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * *
85452950 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATA-
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
* * * * *
85452989 CCCGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* * *
85453029 CC-GGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
85453068 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * * *
85453108 CTGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* *
85453148 CCGAGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
85453170 ATCATGCTGG
Statistics
Matches: 190, Mismatches: 21, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 50 0.26
40 137 0.72
41 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:85457018 original size:49 final size:49
Alignment explanation
Indices: 85456943--85457229 Score: 490
Period size: 49 Copynumber: 5.9 Consensus size: 49
85456933 GTATGAGATG
*
85456943 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
85456992 TTATATATGTGAT-AGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 -TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
85457041 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
85457090 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
85457137 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
85457186 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
85457230 CATATGTGTG
Statistics
Matches: 226, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
47 43 0.19
48 12 0.05
49 159 0.70
50 12 0.05
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:85457188 original size:96 final size:96
Alignment explanation
Indices: 85456942--85457229 Score: 488
Period size: 96 Copynumber: 3.0 Consensus size: 96
85456932 TGTATGAGAT
*
85456942 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATTATATATGTGAT-A
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA-TATATATGTGATAA
*
85457006 GGCCTAATGGCCAATGTGATGAATGTGAAAGT
65 GGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
85457038 GTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATA
85457103 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
64 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
85457136 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
*
85457201 GCCTAATGGCCGATGTGATGAATGTGAAA
66 GCCTAATGGCCAATGTGATGAATGTGAAA
85457230 CATATGTGTG
Statistics
Matches: 182, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
96 90 0.49
97 11 0.06
98 81 0.45
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (96 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:85457316 original size:65 final size:68
Alignment explanation
Indices: 85457245--85457379 Score: 168
Period size: 74 Copynumber: 1.9 Consensus size: 68
85457235 GTGTGATATG
*
85457245 TATATGTGGTAAAGCCGAATGGC-T-AATGT-AAACATATGTGTGATATGTATATGTGGTAAAGG
1 TATATGTGATAAAGCCGAATGGCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGG
85457307 CTA
66 CTA
* *
85457310 TATATGTGATAAGGCCTAATGGCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGG
1 TATATGTGATAAAGCCGAATGGC-----G-TGAATGTGAAACATATGTGTGATATGTATATGTGG
85457375 TAAAG
60 TAAAG
85457380 CCGAAGGCTA
Statistics
Matches: 58, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
65 20 0.34
72 1 0.02
73 5 0.09
74 32 0.55
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (68 bp):
TATATGTGATAAAGCCGAATGGCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGG
CTA
Found at i:85457366 original size:121 final size:122
Alignment explanation
Indices: 85457186--85457426 Score: 450
Period size: 121 Copynumber: 2.0 Consensus size: 122
85457176 TGAAGGTGTA
85457186 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
85457251 TGGTAAAGCCGAATGGCTAATGT-AAACATATGTGTGATATGTATATGTGGTAAAGGC
66 TGGTAAAGCCGAA-GGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGGC
85457308 TATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
*
85457372 TGGTAAAGCCGAAGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAG
66 TGGTAAAGCCGAAGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
85457427 CCGAATGGCT
Statistics
Matches: 117, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
120 9 0.08
121 84 0.72
122 24 0.21
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.32
Consensus pattern (122 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
TGGTAAAGCCGAAGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGGC
Found at i:85457456 original size:48 final size:48
Alignment explanation
Indices: 85457342--85457492 Score: 277
Period size: 48 Copynumber: 3.2 Consensus size: 48
85457332 CGATGTGATG
*
85457342 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAA-GGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
85457389 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
85457437 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
85457485 AATGTGAA
1 AATGTGAA
85457493 TGTTGTAACA
Statistics
Matches: 101, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
47 42 0.42
48 59 0.58
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:85457586 original size:37 final size:37
Alignment explanation
Indices: 85457532--85457622 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
85457522 AACTTGGAAA
*
85457532 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
85457570 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
85457607 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
85457623 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:85461282 original size:42 final size:42
Alignment explanation
Indices: 85461156--85461319 Score: 157
Period size: 42 Copynumber: 3.9 Consensus size: 42
85461146 TACCATACCA
** * * * * *
85461156 ATGCCATATATCAGATATGGCCTTACATGTAATCTCGTATCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * * * *
85461198 ATACGAATATGCCAGTTATGGTCTTACATGAAATCTCTTATCG
1 ATGC-CATATCCCAGATATGGTCTTACACGAAATCTCATATCG
** * *
85461241 ATGCCATATCGTAGATATGGTCTTACACGGATTCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
*
85461283 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
85461320 GTAACCCTAA
Statistics
Matches: 98, Mismatches: 23, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
42 65 0.66
43 33 0.34
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:85463445 original size:51 final size:51
Alignment explanation
Indices: 85463385--85463482 Score: 187
Period size: 51 Copynumber: 1.9 Consensus size: 51
85463375 GACTTTAACC
85463385 TGAAAGCATAAACTATCACTTCACATTATTGTATTAAAACACATTCCTACT
1 TGAAAGCATAAACTATCACTTCACATTATTGTATTAAAACACATTCCTACT
*
85463436 TGAAAGCATAAACTATCACTTCACATTCTTGTATTAAAACACATTCC
1 TGAAAGCATAAACTATCACTTCACATTATTGTATTAAAACACATTCC
85463483 AATCTGTTCG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (51 bp):
TGAAAGCATAAACTATCACTTCACATTATTGTATTAAAACACATTCCTACT
Found at i:85463839 original size:145 final size:145
Alignment explanation
Indices: 85463576--85463864 Score: 517
Period size: 145 Copynumber: 2.0 Consensus size: 145
85463566 AGCACCTTCA
* *
85463576 ACTGTTTTCACCTTTGCTAACATGCAACAGGCCTTTCAAACTTCCATCAACGTGATAATTTATCA
1 ACTGTTTTCAACTTTGCTAACATGCAACAGACCTTTCAAACTTCCATCAACGTGATAATTTATCA
*
85463641 ATCGGAGCAGCTTTAACTTATAACAACATCATTCAACTAGAACAAATCTAATAGGTATACCTCTG
66 ATCGGAGCAGCTTTAACTCATAACAACATCATTCAACTAGAACAAATCTAATAGGTATACCTCTG
85463706 TATCACACTTTCTAG
131 TATCACACTTTCTAG
*
85463721 ACTGTTTTCAACTTTGTTAACATGCAACAGACCTTTCAAACTTCCATCAACGTGATAATTTTATC
1 ACTGTTTTCAACTTTGCTAACATGCAACAGACCTTTCAAACTTCCATCAACGTGATAA-TTTATC
*
85463786 AATCGGAGCAGCTTTAACTCATAA-AACATCATTCAACTAGAACAAATCTAATAGGTATACCTTT
65 AATCGGAGCAGCTTTAACTCATAACAACATCATTCAACTAGAACAAATCTAATAGGTATACCTCT
85463850 GTATCACACTTTCTA
130 GTATCACACTTTCTA
85463865 AAATATGAAT
Statistics
Matches: 138, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
145 109 0.79
146 29 0.21
ACGTcount: A:0.34, C:0.23, G:0.10, T:0.33
Consensus pattern (145 bp):
ACTGTTTTCAACTTTGCTAACATGCAACAGACCTTTCAAACTTCCATCAACGTGATAATTTATCA
ATCGGAGCAGCTTTAACTCATAACAACATCATTCAACTAGAACAAATCTAATAGGTATACCTCTG
TATCACACTTTCTAG
Found at i:85468790 original size:13 final size:15
Alignment explanation
Indices: 85468772--85468803 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
85468762 GAATTTTAAC
85468772 AAAATCAT-T-CCAT
1 AAAATCATATACCAT
85468785 AAAATCATATACCAT
1 AAAATCATATACCAT
85468800 AAAA
1 AAAA
85468804 ATATAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 1 0.06
15 8 0.47
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (15 bp):
AAAATCATATACCAT
Found at i:85482141 original size:215 final size:214
Alignment explanation
Indices: 85481770--85482198 Score: 680
Period size: 215 Copynumber: 2.0 Consensus size: 214
85481760 ACATCAGCAG
*
85481770 GTGAAATCGTATGAAGGATCTGATCAATACCATTGTAAAATTGATACTGGAAGACATTATGAATC
1 GTGAAATCGTATGAAGGATCTGATCAATACCATTGTAAAATCGATACTGGAAGACATTATGAATC
*
85481835 TTTTCTAACTCTAACAACAAAGTTAATCAATAAGATATTGGCCTAATCCTCTCAATGGTCTCTTA
66 TTTTCTAACTCTAACAACAAAGTTAATCAATAAGATATTGGCCTAATCCTCTCAATGGTCTCGTA
*
85481900 CTGCCTGATAAACTACTGATTAAGCTTTCTTTTCCAACCAAATC-AAGGAACTTTCTTCCAAGGC
131 CTGCCTGATAAACTACTGACTAAGCTTTCTTTTCCAACCAAATCGAA-GAACTTTCTTCCAAGGC
85481964 GATACTTTCAAAAATACTCT
195 GATACTTTCAAAAATACTCT
* * *
85481984 GTGAAATTGTGTGATGGATCTGATCAATACCATTGTAAAATCGATACATGGAAGACATTATGAAT
1 GTGAAATCGTATGAAGGATCTGATCAATACCATTGTAAAATCGATAC-TGGAAGACATTATGAAT
* * * * *
85482049 CTTTTCTAACTCTAACAGCAAAGTTAATTAGTAGGCTATTGGCCTAATCCTCTCAATGGTCTCGT
65 CTTTTCTAACTCTAACAACAAAGTTAATCAATAAGATATTGGCCTAATCCTCTCAATGGTCTCGT
* ** ***
85482114 ACTGCCTGATAAATTGTTGACTAAGCTTTCTTTTTTGACCAAATCGAAGAACTTTCTTCCAAGGC
130 ACTGCCTGATAAACTACTGACTAAGCTTTCTTTTCCAACCAAATCGAAGAACTTTCTTCCAAGGC
85482179 GATACTTTCAAAAATACTCT
195 GATACTTTCAAAAATACTCT
85482199 ATGGCTGACT
Statistics
Matches: 196, Mismatches: 17, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
214 43 0.22
215 151 0.77
216 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (214 bp):
GTGAAATCGTATGAAGGATCTGATCAATACCATTGTAAAATCGATACTGGAAGACATTATGAATC
TTTTCTAACTCTAACAACAAAGTTAATCAATAAGATATTGGCCTAATCCTCTCAATGGTCTCGTA
CTGCCTGATAAACTACTGACTAAGCTTTCTTTTCCAACCAAATCGAAGAACTTTCTTCCAAGGCG
ATACTTTCAAAAATACTCT
Found at i:85486406 original size:68 final size:70
Alignment explanation
Indices: 85486334--85486531 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
85486324 ACACCCTGTA
* * * *
85486334 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
85486396 ATAAAT
65 ATAAAT
*
85486402 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
85486467 ATAAAT
65 ATAAAT
*
85486473 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
85486532 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:85486445 original size:41 final size:41
Alignment explanation
Indices: 85486400--85486517 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
85486390 TGAAAGATAA
85486400 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
85486441 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
85486471 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
85486512 ATGTAG
1 ATGTAG
85486518 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:85486457 original size:71 final size:71
Alignment explanation
Indices: 85486368--85486531 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
85486358 GAGATGTATC
85486368 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
85486433 AGGACA
66 AGGACA
85486439 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
85486504 AGGACA
66 AGGACA
85486510 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
85486532 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:85491741 original size:40 final size:40
Alignment explanation
Indices: 85491653--85491832 Score: 290
Period size: 40 Copynumber: 4.5 Consensus size: 40
85491643 TATGTGCATA
85491653 GCATTCGTGCGGGTTATTATAACCGGGTTAAGT-CCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
85491692 GCATTCGTGCGGGTTATTATAATCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
85491732 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCTCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* * *
85491772 GCATTCGTTCGGGTTATTATAATCGGGTTAAGTCCCAAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
85491812 GCATTCGTGCTGGTTGTTATA
1 GCATTCGTGCGGGTTATTATA
85491833 TCCGAGCCAA
Statistics
Matches: 130, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 32 0.25
40 98 0.75
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:85499259 original size:47 final size:46
Alignment explanation
Indices: 85499189--85499723 Score: 728
Period size: 47 Copynumber: 11.4 Consensus size: 46
85499179 CCCTTCGGGA
* *
85499189 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-AGC
* * * *
85499236 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTA-GC
* *
85499283 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTAGAT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAG-C
* * *
85499330 CTTATCTCATATATACACTTTCATATTCATCACATTGGCCATTAGAT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAG-C
* * * *
85499377 CTTATCTCATATATACACTTTCATATTCATCACATTAGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTA-GC
* * *
85499424 CTTATCTCATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-AGC
* *
85499471 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCA-TTAGC
* *
85499518 CTTATCACATATATACACTTTCACATTCATCACATTGACCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-AGC
*
85499565 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTA-GC
* *
85499612 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-AGC
*
85499659 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTA-GC
*
85499706 CTTATCACATATACACAC
1 CTTATCACATATATACAC
85499724 CTTGTACATC
Statistics
Matches: 451, Mismatches: 28, Indels: 18
0.91 0.06 0.04
Matches are distributed among these distances:
46 4 0.01
47 444 0.98
48 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.35
Consensus pattern (46 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGC
Found at i:85504406 original size:40 final size:40
Alignment explanation
Indices: 85504351--85504491 Score: 228
Period size: 40 Copynumber: 3.5 Consensus size: 40
85504341 TATGTGCATA
*
85504351 GCATTCGTGCGGGTTATTATAACCAGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
85504391 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* * *
85504431 GCATTCGTACGGGTTATTATAATCGGGTTAAGTCCCAAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
85504471 GCATTCGTGCTGGTTGTTATA
1 GCATTCGTGCGGGTTATTATA
85504492 TCCGAGCCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 94 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:85504509 original size:80 final size:80
Alignment explanation
Indices: 85504351--85504509 Score: 210
Period size: 80 Copynumber: 2.0 Consensus size: 80
85504341 TATGTGCATA
* *
85504351 GCATTCGTGCGGGTTATTATAACCAGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCG
1 GCATTCGTACGGGTTATTATAACCAGGTTAAGTCCCAAAGGCATTCGTGCGGGTTATTATAACCG
* ** *
85504416 GGTTAAGTCCCGAAG
66 AGCCAAATCCCGAAG
* * * * *
85504431 GCATTCGTACGGGTTATTATAATCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTGTTATATCCG
1 GCATTCGTACGGGTTATTATAACCAGGTTAAGTCCCAAAGGCATTCGTGCGGGTTATTATAACCG
*
85504496 AGCCAAATTCCGAA
66 AGCCAAATCCCGAA
85504510 AGTATTTAGT
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
80 67 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (80 bp):
GCATTCGTACGGGTTATTATAACCAGGTTAAGTCCCAAAGGCATTCGTGCGGGTTATTATAACCG
AGCCAAATCCCGAAG
Found at i:85507017 original size:27 final size:27
Alignment explanation
Indices: 85506988--85507077 Score: 135
Period size: 27 Copynumber: 3.3 Consensus size: 27
85506978 GGAAAAATAG
* * * *
85506988 TAATTTTACCCCACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
*
85507015 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
85507042 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
85507069 TAATTCTAC
1 TAATTCTAC
85507078 AACTTATCCA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:85507033 original size:54 final size:54
Alignment explanation
Indices: 85506975--85507077 Score: 118
Period size: 54 Copynumber: 1.9 Consensus size: 54
85506965 TTAACACCCT
* * *
85506975 AGGGGAAAAAT-AGTAATTTTACCCCACAAGGGTATTTCGGTAATTCTACCCTAC
1 AGGGG-AAAATCAATAATTCTACCCCACAAGGGTATTTCGATAATTCTACCCTAC
* ** * *
85507029 AGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
1 AGGGGAAAATCAATAATTCTACCCCACAAGGGTATTTCGATAATTCTAC
85507078 AACTTATCCA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
53 2 0.05
54 38 0.95
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31
Consensus pattern (54 bp):
AGGGGAAAATCAATAATTCTACCCCACAAGGGTATTTCGATAATTCTACCCTAC
Found at i:85509521 original size:29 final size:28
Alignment explanation
Indices: 85509464--85509533 Score: 104
Period size: 29 Copynumber: 2.5 Consensus size: 28
85509454 TACCTGTATC
* *
85509464 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
85509492 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
85509521 TGGCCCATTAGGC
1 TGGCCCATTAGGC
85509534 TTAGTCACAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 14 0.37
29 24 0.63
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:85510578 original size:30 final size:30
Alignment explanation
Indices: 85510544--85510603 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
85510534 TTCTCGAGCC
85510544 TAGGGGCAAAA-GTGTAAATATGCAAAAGTT
1 TAGGGGCAAAATG-GTAAATATGCAAAAGTT
* *
85510574 TAGGGGCAAAATGGTAATTTTGCAAAAGTT
1 TAGGGGCAAAATGGTAAATATGCAAAAGTT
85510604 CGTACTTGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.40, C:0.07, G:0.27, T:0.27
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAAATATGCAAAAGTT
Found at i:85513869 original size:46 final size:46
Alignment explanation
Indices: 85513819--85513994 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
85513809 TATTTGGGCA
85513819 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
85513865 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
85513912 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
85513958 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85513995 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:85513974 original size:93 final size:93
Alignment explanation
Indices: 85513815--85513986 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85513805 TGGATATTTG
* *
85513815 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
85513880 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
85513908 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
85513973 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
85513987 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:85516965 original size:15 final size:15
Alignment explanation
Indices: 85516945--85517013 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
85516935 GTATCTTGGG
85516945 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
85516960 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
85516975 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
85516990 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
85517005 TTTCTTTAT
1 TTTCTTTAT
85517014 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:85517014 original size:30 final size:30
Alignment explanation
Indices: 85516936--85517023 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
85516926 CATAGTATCG
* * * *
85516936 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
85516966 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
85516996 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
85517024 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:85519461 original size:46 final size:47
Alignment explanation
Indices: 85519404--85519543 Score: 180
Period size: 46 Copynumber: 3.0 Consensus size: 47
85519394 GGGATATTTG
85519404 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
85519451 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA
*
85519497 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
85519544 ACGGGCGGGT
Statistics
Matches: 77, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
43 4 0.05
45 2 0.03
46 33 0.43
47 32 0.42
48 2 0.03
50 4 0.05
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:85524980 original size:29 final size:29
Alignment explanation
Indices: 85524923--85525036 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
85524913 TACCTGTATC
* * * *
85524923 TGGCCCATTAAGACC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
85524951 TGGCCCATTAGGCCCAAATCAC-TTGTATA
1 TGGCCCATTAGGCCCAAATCACATT-TATA
* * *
85524980 TGGTCCATTCGGCCAAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* *
85525009 TGGCCCGTTAGGCCC-AGTCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
85525037 ATCATGCTCA
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 27 0.38
29 42 0.59
30 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:85529462 original size:29 final size:28
Alignment explanation
Indices: 85529367--85529479 Score: 138
Period size: 28 Copynumber: 4.0 Consensus size: 28
85529357 TACCTGTATC
* * *
85529367 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTTATA
**
85529395 TGGCCCATTAGGCCCAAATCAC-CGTATA
1 TGGCCCATTAGGCCC-AATCACATTTATA
85529423 TGGCCCATTAGGCCCGAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTTATA
* *
85529452 TGGCCCGTTAGGCCCATTCACATTTATA
1 TGGCCCATTAGGCCCAATCACATTTATA
85529480 ATCATGCTCA
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
28 50 0.68
29 23 0.32
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTTATA
Found at i:85530935 original size:16 final size:16
Alignment explanation
Indices: 85530910--85530941 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
85530900 AAGTTCAAGA
*
85530910 TTTCGGGATTTTTGGG
1 TTTCGAGATTTTTGGG
85530926 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
85530942 GCGTTACAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:85533596 original size:23 final size:23
Alignment explanation
Indices: 85533559--85533602 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
85533549 GATCCTTTCA
85533559 CCCTTAAAATATTTTCACTATTAG
1 CCCTTAAAATATTTTCA-TATTAG
*
85533583 CCCTTCAAA-ATTTTCATATT
1 CCCTTAAAATATTTTCATATT
85533603 TACACTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 7 0.37
24 8 0.42
ACGTcount: A:0.32, C:0.23, G:0.02, T:0.43
Consensus pattern (23 bp):
CCCTTAAAATATTTTCATATTAG
Found at i:85536977 original size:10 final size:10
Alignment explanation
Indices: 85536954--85536993 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 10
85536944 TTTTAAGTCT
85536954 ATTTTTGATCG
1 ATTTTTGAT-G
85536965 ATTTTTGATG
1 ATTTTTGATG
85536975 ATTTTT-ATG
1 ATTTTTGATG
85536984 -TTTTTG-TG
1 ATTTTTGATG
85536992 AT
1 AT
85536994 CGTTCCTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
8 7 0.26
9 4 0.15
10 7 0.26
11 9 0.33
ACGTcount: A:0.17, C:0.03, G:0.17, T:0.62
Consensus pattern (10 bp):
ATTTTTGATG
Found at i:85541963 original size:215 final size:214
Alignment explanation
Indices: 85541587--85542018 Score: 632
Period size: 215 Copynumber: 2.0 Consensus size: 214
85541577 TCAAGTCAGC
* *
85541587 CACAAAGTATTTTTGAAAGTGTCGCCTTGGAAGAAAGTTCTTCGATTTGGTCGAAAAACAGAGCT
1 CACAAAGTATTTTTGAAAGTATCGCCTTGGAAGAAAGTTCTTCGATTTGGTCGAAAAACAAAGCT
* *
85541652 TAGTCAACAATTTATCAGCCAGTACGAGACCATTGAGAGGATTAGGCCAATAGCCTACTAATTAA
66 TAATCAACAATTTATCAGCCAGTAAGAGACCATTGAGAGGATTAGGCCAATAGCCTACTAATTAA
* *
85541717 CTTTGCTGTTAGAGTTAGAAAAGATTCATAATGTCTTCCATGTATCGATTTTACAATGGTATTGA
131 CTTTGCTGTTAGAGTTAGAAAAGATTCATAATGTCTTCCA-ATATCAATTTTACAATGGTATTGA
85541782 TCAGATCCATCACACAATTT
195 TCAGATCCATCACACAATTT
* * * *
85541802 CACAGAGTATTTTTGAAAGTATCGCCTTGGAAGAAAGTTCCTT-GATTTGGTTGGAAAAGAAAGC
1 CACAAAGTATTTTTGAAAGTATCGCCTTGGAAGAAAGTT-CTTCGATTTGGTCGAAAAACAAAGC
* * * * * * * *
85541866 TTAATCAGCAGTTTATTAGGCAGTAAGAGACCATTGAGAGGATTAGGCCAATATCTTATTGATTA
65 TTAATCAACAATTTATCAGCCAGTAAGAGACCATTGAGAGGATTAGGCCAATAGCCTACTAATTA
* *
85541931 ACTTTGTTGTTAGAGTTAGCAAAGATTCATAATGTCTTCCAATATCAATTTTACAATGGTATTGA
130 ACTTTGCTGTTAGAGTTAGAAAAGATTCATAATGTCTTCCAATATCAATTTTACAATGGTATTGA
* * *
85541996 TCAGATCCTTCATACGATTT
195 TCAGATCCATCACACAATTT
85542016 CAC
1 CAC
85542019 CTGTTGATGT
Statistics
Matches: 193, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
214 42 0.22
215 148 0.77
216 3 0.02
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (214 bp):
CACAAAGTATTTTTGAAAGTATCGCCTTGGAAGAAAGTTCTTCGATTTGGTCGAAAAACAAAGCT
TAATCAACAATTTATCAGCCAGTAAGAGACCATTGAGAGGATTAGGCCAATAGCCTACTAATTAA
CTTTGCTGTTAGAGTTAGAAAAGATTCATAATGTCTTCCAATATCAATTTTACAATGGTATTGAT
CAGATCCATCACACAATTT
Found at i:85553800 original size:7 final size:7
Alignment explanation
Indices: 85553788--85553812 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
85553778 TCAAAATTTT
85553788 TCTCGAG
1 TCTCGAG
85553795 TCTCGAG
1 TCTCGAG
85553802 TCTCGAG
1 TCTCGAG
85553809 TCTC
1 TCTC
85553813 TAGCCTCTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.32, G:0.24, T:0.32
Consensus pattern (7 bp):
TCTCGAG
Found at i:85555912 original size:28 final size:28
Alignment explanation
Indices: 85555879--85555947 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
85555869 GCGTAGATCA
85555879 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
85555907 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
85555935 CGATA-TACCCCTA
1 CGAAATTACCCCTA
85555948 GAGTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 8 0.21
28 30 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:85558336 original size:13 final size:15
Alignment explanation
Indices: 85558309--85558342 Score: 54
Period size: 13 Copynumber: 2.4 Consensus size: 15
85558299 TTTGTTATAT
85558309 TTTTATGGTATATGA
1 TTTTATGGTATATGA
85558324 TTTTATGG-A-ATGA
1 TTTTATGGTATATGA
85558337 TTTTAT
1 TTTTAT
85558343 TAAAATTCCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.53
14 1 0.05
15 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.18, T:0.56
Consensus pattern (15 bp):
TTTTATGGTATATGA
Found at i:85559486 original size:42 final size:42
Alignment explanation
Indices: 85559437--85559634 Score: 222
Period size: 42 Copynumber: 4.7 Consensus size: 42
85559427 TTACTGAGTG
* * *
85559437 TACGTGTAAGACCATATCTGGGATATGGGATCGATATGAGAT
1 TACGTGTAAGACCATATCTGGGATATGGCATCTATACGAGAT
* * * *
85559479 TTCGTGTAAGACCATATCTGGGATATAGCATCAATAAGAGAT
1 TACGTGTAAGACCATATCTGGGATATGGCATCTATACGAGAT
* * * * *
85559521 TTCATGTAAGACCATAACTGAGTTATTGGCATCTATACGAGAT
1 TACGTGTAAGACCATATCTGGGATA-TGGCATCTATACGAGAT
* * *
85559564 TACGTGT---ACCATAACTGAGTTATTGGCATCTATACGAGAT
1 TACGTGTAAGACCATATCTGGGATA-TGGCATCTATACGAGAT
85559604 TACGTGTAAGACCATATCTGGGATATGGCAT
1 TACGTGTAAGACCATATCTGGGATATGGCAT
85559635 TGGTACGGTA
Statistics
Matches: 135, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
40 40 0.30
42 64 0.47
43 31 0.23
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (42 bp):
TACGTGTAAGACCATATCTGGGATATGGCATCTATACGAGAT
Found at i:85559581 original size:40 final size:40
Alignment explanation
Indices: 85559531--85559611 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
85559521 TTCATGTAAG
85559531 ACCATAACTGAGTTATTGGCATCTATACGAGATTACGTGT
1 ACCATAACTGAGTTATTGGCATCTATACGAGATTACGTGT
85559571 ACCATAACTGAGTTATTGGCATCTATACGAGATTACGTGT
1 ACCATAACTGAGTTATTGGCATCTATACGAGATTACGTGT
85559611 A
1 A
85559612 AGACCATATC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (40 bp):
ACCATAACTGAGTTATTGGCATCTATACGAGATTACGTGT
Found at i:85561164 original size:13 final size:13
Alignment explanation
Indices: 85561146--85561179 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
85561136 ATGAGACACG
85561146 ACCGTGTGTCACA
1 ACCGTGTGTCACA
85561159 ACCGTGTGTCACA
1 ACCGTGTGTCACA
*
85561172 ATCGTGTG
1 ACCGTGTG
85561180 AAGGATACGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (13 bp):
ACCGTGTGTCACA
Found at i:85565965 original size:42 final size:42
Alignment explanation
Indices: 85565911--85566016 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 42
85565901 ATTAGGTTAC
* *
85565911 TGAG-ATTACGTGTAAGACCATATATGGGATATGGCATCGATA
1 TGAGAATT-CGTGTAAGACCATATATGCGATATGGCATCAATA
*
85565953 TGAGAATTCGTGTAAGACCATATCTGCGATATGGCATCAATA
1 TGAGAATTCGTGTAAGACCATATATGCGATATGGCATCAATA
** * *
85565995 AAAGATTTCATGTAAGACCATA
1 TGAGAATTCGTGTAAGACCATA
85566017 GCTGGCATAT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 53 0.95
43 3 0.05
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (42 bp):
TGAGAATTCGTGTAAGACCATATATGCGATATGGCATCAATA
Found at i:85571823 original size:29 final size:29
Alignment explanation
Indices: 85571789--85571875 Score: 79
Period size: 29 Copynumber: 2.9 Consensus size: 29
85571779 TAGTGATTTG
85571789 TGAAAATTGAATTAAATTTAAATTTATGTA
1 TGAAAATT-AATTAAATTTAAATTTATGTA
* *
85571819 T-AAAATT-ATACAAAATTAAATTTCATGTA
1 TGAAAATTAAT-TAAATTTAAATTT-ATGTA
* *
85571848 TGAAAATACACATTAAATTAAAATTTAT
1 TGAAAAT-TA-ATTAAATTTAAATTTAT
85571876 ATTTAATTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
27 2 0.04
28 11 0.24
29 12 0.27
30 6 0.13
31 2 0.04
32 10 0.22
33 2 0.04
ACGTcount: A:0.51, C:0.05, G:0.06, T:0.39
Consensus pattern (29 bp):
TGAAAATTAATTAAATTTAAATTTATGTA
Found at i:85578407 original size:43 final size:43
Alignment explanation
Indices: 85578338--85578492 Score: 158
Period size: 43 Copynumber: 3.6 Consensus size: 43
85578328 TTAGAAAAAA
* *
85578338 CACCGCTAAAGGTCATG-TTCTTTAGCGATGTTTGTGGGGAAAG
1 CACCGCTAAAGGTCATGTTTC-ATAGCGACGTTTGTGGGGAAAG
*
85578381 CACCAG-TAAAGTTCATGTTTCATAGCGACGTTTGTGGGGAAAG
1 CACC-GCTAAAGGTCATGTTTCATAGCGACGTTTGTGGGGAAAG
* * *
85578424 CACCGCTAAAGGTCATG-TTCTTTAGCGGCGCTTGT-GGGAAAG
1 CACCGCTAAAGGTCATGTTTC-ATAGCGACGTTTGTGGGGAAAG
** *
85578466 TGCTGCTAAAGGTCATG-TTCTATAGCG
1 CACCGCTAAAGGTCATGTTTC-ATAGCG
85578493 GCACTTTTCT
Statistics
Matches: 97, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
42 34 0.35
43 59 0.61
44 4 0.04
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
CACCGCTAAAGGTCATGTTTCATAGCGACGTTTGTGGGGAAAG
Found at i:85580771 original size:40 final size:40
Alignment explanation
Indices: 85580608--85580773 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
85580598 AAATTGAATG
* * * **
85580608 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * **
85580647 ATATCCGGGTTAAGACCCGAAGGCA-ATGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
85580686 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
85580726 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
85580766 ATATCCGG
1 ATATCCGG
85580774 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
39 44 0.43
40 58 0.57
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:85596871 original size:27 final size:28
Alignment explanation
Indices: 85596815--85596884 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
85596805 AAATTTGTAC
85596815 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
85596843 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
85596870 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
85596885 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:85596895 original size:27 final size:27
Alignment explanation
Indices: 85596815--85596896 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
85596805 AAATTTGTAC
* *
85596815 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
85596843 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
85596870 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
85596897 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:85607404 original size:28 final size:28
Alignment explanation
Indices: 85607372--85607440 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
85607362 GCGTAGATCA
85607372 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
85607400 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
85607428 CGATA-TACCCCTA
1 CGAAATTACCCCTA
85607441 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:85608859 original size:40 final size:40
Alignment explanation
Indices: 85608815--85608994 Score: 256
Period size: 40 Copynumber: 4.5 Consensus size: 40
85608805 ACTCGACTGT
* * *
85608815 CTTCGGGACA-TAGCCCGG-TTATAGTAATTCGCGCAAATGC
1 CTTCGGGA-ATTAACCCGGATT-TAGTAACTCGCACAAATGC
* * *
85608855 CTTCGGGAATTAACCCGGATTTGGTAATTCGCACAATTGC
1 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
*
85608895 CTTCGGGAATTAACCCGGATTTAGTAACTCACACAAATGC
1 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
*
85608935 CTTCAGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
85608975 CTTCGGGAATTAACCCGGAT
1 CTTCGGGAATTAACCCGGAT
85608995 ATCATTCGAA
Statistics
Matches: 127, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 124 0.98
41 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (40 bp):
CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:85611328 original size:93 final size:93
Alignment explanation
Indices: 85611169--85611341 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
85611159 CACCCATAAG
* * *
85611169 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
85611234 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
85611262 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
85611327 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
85611342 CAAATATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:85611337 original size:46 final size:46
Alignment explanation
Indices: 85611162--85611337 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
85611152 TGTAACCCAC
* * * *
85611162 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * * *
85611208 CCATGAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
85611258 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
85611301 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
85611338 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 61 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:85611356 original size:46 final size:47
Alignment explanation
Indices: 85611213--85611356 Score: 131
Period size: 46 Copynumber: 3.1 Consensus size: 47
85611203 CGCATCCATG
* * * *
85611213 AGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATC--CTA
* *
85611261 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATT--ATCC-TA
*
85611306 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCTA
85611352 AGTGA
1 AGTGA
85611357 CATGTCACTT
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 3 0.04
46 35 0.44
47 29 0.37
48 5 0.06
50 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (47 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCTA
Found at i:85616116 original size:34 final size:34
Alignment explanation
Indices: 85616067--85616143 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
85616057 TTGTTGCATT
**
85616067 ACTGATACTGTTACTG-TAATGGGCTAAGGCCCAC
1 ACTGATACTACTACTGCT-ATGGGCTAAGGCCCAC
*
85616101 ATTGATACTACTACTGCTATGGGCTAAGGCCCAC
1 ACTGATACTACTACTGCTATGGGCTAAGGCCCAC
85616135 ACTGATACT
1 ACTGATACT
85616144 GGACTGTCAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
34 37 0.97
35 1 0.03
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (34 bp):
ACTGATACTACTACTGCTATGGGCTAAGGCCCAC
Found at i:85619723 original size:23 final size:23
Alignment explanation
Indices: 85619698--85619822 Score: 105
Period size: 23 Copynumber: 5.3 Consensus size: 23
85619688 TAGCTCGTAG
* *
85619698 GAGCTTACTGTTTCAGCTCATTG
1 GAGCTTACTGTTTCAGCTCAATA
* * *
85619721 GAGCTTACCGATTCAACTCGAA-A
1 GAGCTTACTGTTTCAGCTC-AATA
*
85619744 GAGCTTACT-ATT-AGCTCAATA
1 GAGCTTACTGTTTCAGCTCAATA
85619765 GAGCTTACCAT-TTTCAGCTCAATA
1 GAGCTTA-C-TGTTTCAGCTCAATA
*
85619789 GAGCTTACTGTTTATCAGCTCAGTAA
1 GAGCTTACTG-TT-TCAGCTCAAT-A
85619815 GAGCTTAC
1 GAGCTTAC
85619823 CGACCATGAC
Statistics
Matches: 84, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
20 2 0.02
21 12 0.14
22 5 0.06
23 28 0.33
24 19 0.23
25 9 0.11
26 9 0.11
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCAATA
Found at i:85619821 original size:26 final size:24
Alignment explanation
Indices: 85619708--85619823 Score: 91
Period size: 24 Copynumber: 4.9 Consensus size: 24
85619698 GAGCTTACTG
* *
85619708 TTTCAGCTCATTGGAGCTTACCGA-
1 TTTCAGCTCAATAGAGCTTACC-AT
*
85619732 -TTCAACTCGAA-AGAGCTTA-C-T
1 TTTCAGCTC-AATAGAGCTTACCAT
*
85619753 ATT-AGCTCAATAGAGCTTACCAT
1 TTTCAGCTCAATAGAGCTTACCAT
**
85619776 TTTCAGCTCAATAGAGCTTACTGT
1 TTTCAGCTCAATAGAGCTTACCAT
*
85619800 TTATCAGCTCAGTAAGAGCTTACC
1 TT-TCAGCTCAAT-AGAGCTTACC
85619824 GACCATGACT
Statistics
Matches: 74, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
20 2 0.03
21 12 0.16
22 4 0.05
23 17 0.23
24 21 0.28
25 9 0.12
26 9 0.12
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (24 bp):
TTTCAGCTCAATAGAGCTTACCAT
Found at i:85621912 original size:34 final size:34
Alignment explanation
Indices: 85621869--85621937 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
85621859 GGTGACGGAT
*
85621869 ACGAGTTAAGGGTGATACACTACGTACGTTCCAC
1 ACGAGTTAAGGGTAATACACTACGTACGTTCCAC
85621903 ACGAGTTAAGGGTAATACACTACGTACGTTCCAC
1 ACGAGTTAAGGGTAATACACTACGTACGTTCCAC
85621937 A
1 A
85621938 TTCTCTCTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (34 bp):
ACGAGTTAAGGGTAATACACTACGTACGTTCCAC
Found at i:85625924 original size:24 final size:24
Alignment explanation
Indices: 85625897--85625994 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
85625887 AAGGCTGTCA
*
85625897 GGAGAAAATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
85625921 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
85625945 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
85625969 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
85625994 G
1 G
85625995 AGCAGGAGTT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 65 0.96
25 3 0.04
ACGTcount: A:0.37, C:0.05, G:0.38, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:85627350 original size:19 final size:22
Alignment explanation
Indices: 85627308--85627347 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
85627298 CATGTTGGAC
85627308 TGTTGTTATTTACTGCATGCCA
1 TGTTGTTATTTACTGCATGCCA
85627330 TGTTGTTATTT-CTG-ATGC
1 TGTTGTTATTTACTGCATGC
85627348 ATGAGACTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 3 0.17
22 11 0.61
ACGTcount: A:0.15, C:0.15, G:0.20, T:0.50
Consensus pattern (22 bp):
TGTTGTTATTTACTGCATGCCA
Found at i:85627536 original size:21 final size:21
Alignment explanation
Indices: 85627490--85627536 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
85627480 TCCCCACATG
85627490 GAGTGTAGGGCTGGTACGGGTA
1 GAGTGTAGGGCTGGTA-GGGTA
* *
85627512 GAGTGTAGCGGTTGGT-GGGTT
1 GAGTGTAG-GGCTGGTAGGGTA
85627533 GAGT
1 GAGT
85627537 AGACTCCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 8 0.36
22 8 0.36
23 6 0.27
ACGTcount: A:0.15, C:0.06, G:0.51, T:0.28
Consensus pattern (21 bp):
GAGTGTAGGGCTGGTAGGGTA
Found at i:85627696 original size:32 final size:31
Alignment explanation
Indices: 85627605--85627696 Score: 78
Period size: 32 Copynumber: 2.8 Consensus size: 31
85627595 TATGGGCCAT
* *
85627605 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAAT---GGGCTTAGGCCCAGTTC
* * **
85627639 AATGTAATCTGAAAAGGCTCT-GGCCCAGTATC
1 ACTGTTATCTGAATGGGCT-TAGGCCCAGT-TC
85627671 ACTGTTATCTGAATGGGCTTAGGCCC
1 ACTGTTATCTGAATGGGCTTAGGCCC
85627697 GATGGGCTTG
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
31 13 0.29
32 21 0.47
34 11 0.24
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (31 bp):
ACTGTTATCTGAATGGGCTTAGGCCCAGTTC
Found at i:85633817 original size:24 final size:24
Alignment explanation
Indices: 85633784--85633881 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
85633774 AAGGCTATCA
85633784 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
85633808 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
85633832 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
85633856 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
85633881 G
1 G
85633882 AGCAGGAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 64 0.96
25 3 0.04
ACGTcount: A:0.36, C:0.04, G:0.39, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:85637168 original size:2 final size:2
Alignment explanation
Indices: 85637161--85637187 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
85637151 GAGACTAGTC
85637161 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
85637188 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:85644287 original size:29 final size:29
Alignment explanation
Indices: 85644255--85644349 Score: 156
Period size: 29 Copynumber: 3.3 Consensus size: 29
85644245 AATCATATTC
85644255 ATATGG-CTCATTAGGCCCAAATCACCTGT
1 ATATGGCCT-ATTAGGCCCAAATCACCTGT
85644284 ATATGGCCTATTAGGCCCAAATCACCTGT
1 ATATGGCCTATTAGGCCCAAATCACCTGT
* *
85644313 ATATGGCCTATTAGGCCCAAATCACATTT
1 ATATGGCCTATTAGGCCCAAATCACCTGT
85644342 ATATGGCC
1 ATATGGCC
85644350 CGTTAGTCCC
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
29 61 0.97
30 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (29 bp):
ATATGGCCTATTAGGCCCAAATCACCTGT
Found at i:85644355 original size:29 final size:29
Alignment explanation
Indices: 85644245--85644373 Score: 143
Period size: 29 Copynumber: 4.5 Consensus size: 29
85644235 GCCCATCCCC
* * *
85644245 AATCATATTCATATGGCTCATTAGGCCCA
1 AATCACATTTATATGGCCCATTAGGCCCA
* * *
85644274 AATCACCTGTATATGGCCTATTAGGCCCA
1 AATCACATTTATATGGCCCATTAGGCCCA
* * *
85644303 AATCACCTGTATATGGCCTATTAGGCCCA
1 AATCACATTTATATGGCCCATTAGGCCCA
* *
85644332 AATCACATTTATATGGCCCGTTAGTCCC-
1 AATCACATTTATATGGCCCATTAGGCCCA
*
85644360 AATCACATTCATAT
1 AATCACATTTATAT
85644374 TCATGCTCAC
Statistics
Matches: 88, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 13 0.15
29 75 0.85
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.30
Consensus pattern (29 bp):
AATCACATTTATATGGCCCATTAGGCCCA
Found at i:85645682 original size:21 final size:21
Alignment explanation
Indices: 85645655--85645715 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
85645645 TATAATGAGT
85645655 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
85645676 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
85645697 ATATTAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
85645716 ATAATAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:85645709 original size:10 final size:11
Alignment explanation
Indices: 85645641--85645715 Score: 57
Period size: 10 Copynumber: 7.1 Consensus size: 11
85645631 ACCCAACCCA
*
85645641 TGCATATAATG
1 TGCATATCATG
* *
85645652 AGTATATCAT-
1 TGCATATCATG
*
85645662 AGCATATCATG
1 TGCATATCATG
*
85645673 TGCATCTCAT-
1 TGCATATCATG
**
85645683 AACATATCATG
1 TGCATATCATG
*
85645694 TGCATATTATG
1 TGCATATCATG
85645705 T-CATATCATG
1 TGCATATCATG
85645715 T
1 T
85645716 ATAATAATAT
Statistics
Matches: 49, Mismatches: 13, Indels: 5
0.73 0.19 0.07
Matches are distributed among these distances:
10 25 0.51
11 24 0.49
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (11 bp):
TGCATATCATG
Found at i:85647913 original size:40 final size:39
Alignment explanation
Indices: 85647869--85648087 Score: 190
Period size: 40 Copynumber: 5.5 Consensus size: 39
85647859 GCTCGATTGT
* * * *
85647869 CTTCGGGACATAGCCCGGTTATAGTGATTAGCACAATTGC
1 CTTCGGGACATAGCCCGGTT-TAGTAACTCGCACAAATGC
85647909 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * * *
85647949 CTTTGGGACTTAACCCAGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCC-GGTTTAGTAACTCGCACAAATGC
* * *
85647989 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * *
85648029 CTTCGGGA-ATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGG-TTTAGTAAC-TCGCACAAATGC
* *
85648070 CTTCAGGACTTAGCCCGG
1 CTTCGGGACATAGCCCGG
85648088 ATACCATTCG
Statistics
Matches: 149, Mismatches: 22, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
39 3 0.02
40 119 0.80
41 25 0.17
42 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CTTCGGGACATAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:85654915 original size:40 final size:41
Alignment explanation
Indices: 85654840--85654937 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 41
85654830 GTTATAGTGA
*
85654840 TTCGCACAATTGCCTTCGGGAATCAGCCCGAATTTAGTAAC
1 TTCGCACAAATGCCTTCGGGAATCAGCCCGAATTTAGTAAC
* * *
85654881 -TCGCACAAATGCCTTCGGGAAT-TGACCCGGATTTAGTCAC
1 TTCGCACAAATGCCTTCGGGAATCAG-CCCGAATTTAGTAAC
* *
85654921 TTAGCACAAAAGCCTTC
1 TTCGCACAAATGCCTTC
85654938 AGGATTTAGC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.02
40 34 0.69
41 14 0.29
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (41 bp):
TTCGCACAAATGCCTTCGGGAATCAGCCCGAATTTAGTAAC
Found at i:85654951 original size:41 final size:40
Alignment explanation
Indices: 85654851--85654953 Score: 109
Period size: 41 Copynumber: 2.5 Consensus size: 40
85654841 TCGCACAATT
* * * * *
85654851 GCCTTCGGGAATCAGCCCGAATTTAGTAACTCGCACAAAT
1 GCCTTCAGGAATTAGCCCGGATTTAGTAACTAGCACAAAA
* *
85654891 GCCTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAA
1 GCCTTCAGGAATTAG-CCCGGATTTAGTAAC-TAGCACAAAA
*
85654932 GCCTTCAGGATTTAGCCCGGAT
1 GCCTTCAGGAATTAGCCCGGAT
85654954 ACCATTCGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
39 1 0.02
40 25 0.47
41 26 0.49
42 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
GCCTTCAGGAATTAGCCCGGATTTAGTAACTAGCACAAAA
Found at i:85657231 original size:40 final size:39
Alignment explanation
Indices: 85657110--85657233 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
85657100 TGTGTATGAA
85657110 TGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCAAT
85657149 TGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCAAT
* * * * *
85657188 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGCTATGATACCCGGGCTAAG-CCCGAAGGCAAT
85657228 TGTGCG
1 TGTGCG
85657234 GGTTACCATA
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 62 0.78
40 17 0.22
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCAAT
Found at i:85657249 original size:40 final size:39
Alignment explanation
Indices: 85657110--85657263 Score: 182
Period size: 39 Copynumber: 3.9 Consensus size: 39
85657100 TGTGTATGAA
* *
85657110 TGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATAACCGGGCTAAGCCCGAAGGCAAT
* *
85657149 TGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATAACCGGGCTAAGCCCGAAGGCAAT
* * * *
85657188 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATAACCGGGCTAAG-CCCGAAGGCAAT
* ** *
85657228 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATAACCGGGCTAAG-CCCGAAGG
85657264 TGTTTTGAAC
Statistics
Matches: 102, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 62 0.61
40 40 0.39
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (39 bp):
TGTGCGAGTTATGATAACCGGGCTAAGCCCGAAGGCAAT
Found at i:85657249 original size:79 final size:79
Alignment explanation
Indices: 85657110--85657263 Score: 193
Period size: 79 Copynumber: 1.9 Consensus size: 79
85657100 TGTGTATGAA
** *
85657110 TGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAA
1 TGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
85657175 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * * * *
85657188 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAGCTATGATACCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
85657253 TGTCCCGAAGG
65 AGTCCCGAAGG
85657264 TGTTTTGAAC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
78 23 0.37
79 32 0.51
80 8 0.13
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (79 bp):
TGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:85664259 original size:38 final size:39
Alignment explanation
Indices: 85664163--85664313 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
85664153 AATGTGCGAG
85664163 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
85664202 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
85664241 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
85664279 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
85664314 GGTTACCATA
Statistics
Matches: 106, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
38 36 0.34
39 53 0.50
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:85664259 original size:77 final size:79
Alignment explanation
Indices: 85664163--85664313 Score: 252
Period size: 77 Copynumber: 1.9 Consensus size: 79
85664153 AATGTGCGAG
85664163 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGC
85664227 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
* * *
85664241 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGC
*
85664305 ATTTGTGCG
66 AATTGTGCG
85664314 GGTTACCATA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 46 0.68
78 22 0.32
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:85664329 original size:40 final size:39
Alignment explanation
Indices: 85664163--85664343 Score: 229
Period size: 39 Copynumber: 4.6 Consensus size: 39
85664153 AATGTGCGAG
*
85664163 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
85664202 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
85664241 TGAT-ACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * * * *
85664279 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTA
** *
85664319 CCATAACCGGGCTATGTCCCGAAGG
1 TGATAACCGGGCTAAG-CCCGAAGG
85664344 TGTTTTGAAC
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 35 0.28
39 52 0.41
40 40 0.31
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:85669479 original size:42 final size:43
Alignment explanation
Indices: 85669418--85669523 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
85669408 TGAGATTTAT
* * * *
85669418 GTGTAAGAACATGTTTGGGACA-TCGGCATC-ATATTTGATTTC
1 GTGTAAGACCCTGTCTGGGACAGT-GGCATCGATATTTGATTAC
85669460 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
*
85669503 ATGTAAGACCAC-GTCTGGGAC
1 GTGTAAGACC-CTGTCTGGGAC
85669524 TTGGCATTGG
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
42 25 0.45
43 30 0.54
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
Found at i:85669529 original size:42 final size:42
Alignment explanation
Indices: 85669374--85669530 Score: 149
Period size: 42 Copynumber: 3.7 Consensus size: 42
85669364 ATGTGATTTT
* * * *
85669374 GTGTAAGACCACATCTGGAACGTTGGCATCA-ATTTGAGATTTAT
1 GTGTAAGACCACGTCTGGGACATTGGCATCATATTT--GA-TTAC
* * * * *
85669418 GTGTAAGAACATGTTTGGGACATCGGCATCATATTTGATTTC
1 GTGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTAC
*
85669460 GTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-GTCTGGGACATTGGCATC-ATATTTGATTAC
*
85669503 ATGTAAGACCACGTCTGGGAC-TTGGCAT
1 GTGTAAGACCACGTCTGGGACATTGGCAT
85669531 TGGACGAGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
42 32 0.35
43 31 0.34
44 25 0.27
45 4 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTAC
Found at i:85672763 original size:46 final size:44
Alignment explanation
Indices: 85672670--85672830 Score: 182
Period size: 46 Copynumber: 3.5 Consensus size: 44
85672660 GTTCCAACGT
* *
85672670 ATGTCCCAGACATATCTTACACTAGC-ACATCTCGTAGCCGATGC
1 ATGTCCCAAACATATCTTACACTGGCTACATCTCG-AGCCGATGC
*
85672714 ATGTCCCAGACATATCTTACACTGGCTTACATCTCGAGGCCGATGC
1 ATGTCCCAAACATATCTTACACTGGC-TACATCTCGA-GCCGATGC
* * *
85672760 ATGTCCCAAACATGTCTTACACTGGC-ACTCGTCTCAATGCCGATGTC
1 ATGTCCCAAACATATCTTACACTGGCTA--CATCTCGA-GCCGATG-C
85672807 ATGTCCCAAACATAGTCTTACACT
1 ATGTCCCAAACATA-TCTTACACT
85672831 AGCATTCATA
Statistics
Matches: 103, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
44 26 0.25
45 1 0.01
46 53 0.51
47 14 0.14
48 9 0.09
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (44 bp):
ATGTCCCAAACATATCTTACACTGGCTACATCTCGAGCCGATGC
Found at i:85679596 original size:27 final size:27
Alignment explanation
Indices: 85679526--85679635 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
85679516 AGCATGGTTG
* *
85679526 CCAGAACAGATAA-TGT-G-ACAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
85679550 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
85679578 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
85679605 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
85679632 CCAG
1 CCAG
85679636 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.07
25 8 0.11
26 5 0.07
27 43 0.58
28 13 0.18
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:85685474 original size:120 final size:120
Alignment explanation
Indices: 85685244--85685500 Score: 351
Period size: 120 Copynumber: 2.1 Consensus size: 120
85685234 GAATGATGTT
* *
85685244 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGGTTAAGTCCCAAAGGCATTTGT
1 CGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCAAAGGCATTTGT
* **
85685309 GCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATC
66 GCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAATC
* * *
85685364 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATTCGGGTTAAGTCCCAAAGGCATTTG
1 CGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCAAAGGCATTTG
* *
85685428 TGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATC
65 TGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATC
* *
85685484 C-GGTTAAATTCCGAAGG
1 CGGGTTAAGTCCCGAAGG
85685501 TACGTGATTC
Statistics
Matches: 122, Mismatches: 12, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
119 16 0.13
120 97 0.80
121 9 0.07
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (120 bp):
CGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCAAAGGCATTTGT
GCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATC
Done.