Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 282 of 770
Found at i:85685481 original size:40 final size:40
Alignment explanation
Indices: 85685244--85685467 Score: 335
Period size: 40 Copynumber: 5.6 Consensus size: 40
85685234 GAATGATGTT
* * * *
85685244 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATC
*
85685284 CGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
85685324 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
85685364 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATT
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
85685404 CGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
* *
85685444 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGTTAAGTCCCGAAGGCATTTG
85685468 AACGAGTAGC
Statistics
Matches: 170, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
40 161 0.95
41 9 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:85690555 original size:27 final size:26
Alignment explanation
Indices: 85690520--85690628 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 26
85690510 AGCATGGCTG
* *
85690520 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
85690546 CCAGATACAGATAATCATGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
85690574 CCAGAACAGA-AATCTGTGGCAGAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
* *
85690601 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
85690628 C
1 C
85690629 TAGGACGCTT
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 7 0.10
27 47 0.66
28 17 0.24
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:85690580 original size:54 final size:53
Alignment explanation
Indices: 85690520--85690628 Score: 139
Period size: 54 Copynumber: 2.0 Consensus size: 53
85690510 AGCATGGCTG
*
85690520 CCAGAACAGATAA-TGTGACAGAGTCACCAGATACAGATAATCATGGCAGAGCCA
1 CCAGAACAGA-AACTGTGACAGAGCCACCAGAT-CAGATAATCATGGCAGAGCCA
* ** *
85690574 CCAGAACAGAAATCTGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-CTGTGACAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
85690628 C
1 C
85690629 TAGGACGCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 2 0.04
54 29 0.60
55 17 0.35
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.16
Consensus pattern (53 bp):
CCAGAACAGAAACTGTGACAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
Found at i:85698463 original size:40 final size:40
Alignment explanation
Indices: 85698351--85698503 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
85698341 GGATATAGCG
* * * * ***
85698351 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
85698391 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
85698431 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
85698471 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
85698504 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:85706455 original size:39 final size:40
Alignment explanation
Indices: 85706345--85706495 Score: 148
Period size: 39 Copynumber: 3.8 Consensus size: 40
85706335 GGATATAGCG
* * * * **
85706345 ACTCGCTCAAAAGCCTTC-GGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTA
* * *
85706384 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGG-A
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTA
* *
85706423 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGTA
*
85706463 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
85706496 CATCATTCGA
Statistics
Matches: 91, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
38 3 0.03
39 46 0.51
40 31 0.34
41 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTA
Found at i:85708238 original size:40 final size:40
Alignment explanation
Indices: 85708178--85708277 Score: 130
Period size: 40 Copynumber: 2.5 Consensus size: 40
85708168 GGCTGTCACA
* * * *
85708178 AAGTGTCATATATAGCCGAAGCTAT-TCCAAATCGCACATT
1 AAGTGCCATATATAGTCGAAGCTATCT-CAAATCACACACT
*
85708218 AAGTGCCATATATAGTCGAAGTTATCTCAAATCACACACT
1 AAGTGCCATATATAGTCGAAGCTATCTCAAATCACACACT
*
85708258 AAGTGCCATATATATTCGAA
1 AAGTGCCATATATAGTCGAA
85708278 TCATCGTTAA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 52 0.98
41 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (40 bp):
AAGTGCCATATATAGTCGAAGCTATCTCAAATCACACACT
Found at i:85718385 original size:28 final size:29
Alignment explanation
Indices: 85718323--85718386 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
85718313 GTGACGAGAT
** *
85718323 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCAAGCTGGAAAAATA
*
85718352 TGGCACTAAGTGTGCAAGCT-GAAAAATA
1 CGGCACTAAGTGTGCAAGCTGGAAAAATA
85718380 CGGCACT
1 CGGCACT
85718387 GGGTGTGCGA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 13 0.43
29 17 0.57
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCAAGCTGGAAAAATA
Found at i:85728711 original size:66 final size:68
Alignment explanation
Indices: 85728635--85728821 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
85728625 TAGTACCACT
*
85728635 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
85728697 CACG
65 CACG
85728701 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
85728766 ATCACG
63 ATCACG
85728772 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
85728822 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:85728746 original size:71 final size:71
Alignment explanation
Indices: 85728658--85728821 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
85728648 CGATTTGTCT
85728658 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85728723 CTTTCA
66 CTTTCA
85728729 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85728794 CTTTCA
66 CTTTCA
85728800 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
85728822 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:85728859 original size:71 final size:70
Alignment explanation
Indices: 85728658--85728855 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
85728648 CGATTTGTCT
* * *
85728658 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
85728723 CTTTCA
65 CTTTCA
* * *
85728729 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
85728794 CTTTCA
65 CTTTCA
* *
85728800 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
85728856 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:85736272 original size:43 final size:41
Alignment explanation
Indices: 85736174--85736284 Score: 100
Period size: 43 Copynumber: 2.6 Consensus size: 41
85736164 TATCGAGATG
* * * * *
85736174 TGATTACATGAAAGACCATGTTTGGGACATTGGCATTGTAT
1 TGATTTCATGTAAGACCATGTCTGGAACATTGGCATCGTAT
*
85736215 TGAGATTAT-GTGTAAGACCATGTCTGGAACATTGGCATCGTTAAT
1 T--GATT-TCATGTAAGACCATGTCTGGAACATTGGCATCG-T-AT
85736260 TGATTTCATGTAAGA-CACTGTCTGG
1 TGATTTCATGTAAGACCA-TGTCTGG
85736285 GACAGTGACA
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
41 1 0.02
42 3 0.05
43 48 0.86
44 1 0.02
45 3 0.05
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (41 bp):
TGATTTCATGTAAGACCATGTCTGGAACATTGGCATCGTAT
Found at i:85745287 original size:27 final size:28
Alignment explanation
Indices: 85745230--85745299 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
85745220 AAACTTGTAC
*
85745230 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
85745258 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
85745285 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
85745300 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:85745310 original size:27 final size:27
Alignment explanation
Indices: 85745230--85745311 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
85745220 AAACTTGTAC
* * *
85745230 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
85745258 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
85745285 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
85745312 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:85753223 original size:27 final size:28
Alignment explanation
Indices: 85753166--85753235 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
85753156 AAACTTGTAC
*
85753166 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
85753194 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
85753221 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
85753236 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:85753246 original size:27 final size:27
Alignment explanation
Indices: 85753166--85753247 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
85753156 AAACTTGTAC
* * *
85753166 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
85753194 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
85753221 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
85753248 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:85762221 original size:47 final size:47
Alignment explanation
Indices: 85762130--85762256 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 47
85762120 TGGGTAAGGT
***
85762130 GCCGATGCCATGTCCCAGACACTGTCTTACACTAGCTCATATCTC-AA
1 GCCGATGCCATGTCCCAGACACTGTCTTACACT-GAAAATATCTCGAA
* * *
85762177 GTCGATGCCATGTCCCAGACACGGTCTTACACTGAAAATCATCTCGTA
1 GCCGATGCCATGTCCCAGACACTGTCTTACACTGAAAAT-ATCTCGAA
85762225 GCCGATG-CATGTCCCAGACA-TGTCTTACACTG
1 GCCGATGCCATGTCCCAGACACTGTCTTACACTG
85762257 GCTGCAACAC
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 14 0.20
47 49 0.70
48 7 0.10
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACACTGTCTTACACTGAAAATATCTCGAA
Found at i:85763650 original size:50 final size:49
Alignment explanation
Indices: 85763540--85763718 Score: 205
Period size: 50 Copynumber: 3.6 Consensus size: 49
85763530 GTATGCATAA
* *
85763540 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACGTAG
* ** * * *
85763589 TAGCCTCCACTTAGTACTACACACGTGACCTAACCATCTGATGCACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACGTAG
* * * * * *
85763639 TAGCCTTCACTTAGTACTACACACATGATCGAAGTTATCGGGTACGCATAG
1 TAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACGTAG
85763690 TAGCCTGCACTTAGTACTACACACGTGAC
1 TAGCCTGCACTTAGTACTACACACGTGAC
85763719 ATCACAATAG
Statistics
Matches: 107, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
49 27 0.25
50 43 0.40
51 37 0.35
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACGTAG
Found at i:85765245 original size:50 final size:49
Alignment explanation
Indices: 85765078--85765304 Score: 256
Period size: 49 Copynumber: 4.6 Consensus size: 49
85765068 ATCTGGTATG
* * * * *
85765078 CATAGTAGCTTGCACATAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACA
* * *
85765127 CGTAGGAGCTTGCACTTAGTACTACACACGTGACCAATTATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACA
* ** *
85765176 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGATACA
* * * * * *
85765226 CATAGTAGCCTGCACTTAGTACTACACACGTGATTACAGTTTTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA--CCAATTATCCGATACA
*
85765277 CATAGTAGCATGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
85765305 TGCGACCTCA
Statistics
Matches: 154, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 76 0.49
50 43 0.28
51 34 0.22
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACA
Found at i:85765312 original size:101 final size:99
Alignment explanation
Indices: 85765067--85765312 Score: 278
Period size: 101 Copynumber: 2.5 Consensus size: 99
85765057 TAGCCAAAGC
* * * * ** * *
85765067 TATCTGGTATGCATAGTAGCTTGCACATAGTACTACACATGCGACC-AATTATCCGGTACACGTA
1 TATCCGGTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTAACCATCCGATACACATA
* *
85765131 GGAGCTTGCACTTAGTACTACACACGTGACCAAT
66 GGAGCCTGCACTTAGTACTACACACGTGAACAAT
* * * * * * *
85765165 TATCCGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACATA
1 TATCCGGTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTAACCATCCGATACACATA
* *
85765230 GTAGCCTGCACTTAGTACTACACACGTGATTACAGT
66 GGAGCCTGCACTTAGTACTACACACGTGA--ACAAT
* *
85765266 TTTCGGGTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCT
1 TATCCGGTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCT
85765313 CACAATAGAT
Statistics
Matches: 119, Mismatches: 26, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
98 37 0.31
99 40 0.34
101 42 0.35
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
TATCCGGTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTAACCATCCGATACACATA
GGAGCCTGCACTTAGTACTACACACGTGAACAAT
Found at i:85771916 original size:49 final size:50
Alignment explanation
Indices: 85771735--85771927 Score: 203
Period size: 50 Copynumber: 3.9 Consensus size: 50
85771725 ATCTATTGTG
* * * *
85771735 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTA-CCAGATAA-TT
* * * * * **
85771786 CGATCACGTGTGTCGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
*
85771836 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
* * *
85771886 -GGTCGCATGTGTAGTACTAAGTGCTA-GCTACTATGCGTACCA
1 AGGTCACATGTGTAGTACTAAGTG-TAGGCTACTACGTGTACCA
85771928 TATAGCTTTG
Statistics
Matches: 119, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
49 35 0.29
50 48 0.40
51 36 0.30
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
Found at i:85774577 original size:40 final size:40
Alignment explanation
Indices: 85774540--85774685 Score: 215
Period size: 40 Copynumber: 3.7 Consensus size: 40
85774530 TGAGGAATTG
85774540 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
*
85774580 TATCCGGGCTTAAAGACCCACAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
* * * *
85774620 TATCCAGGCTTAAAGACCCGCAGGCT-TCATGTTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATGT
*
85774660 TATCCGGGC-TAGAGACCCGCAGGCTA
1 TATCCGGGCTTAAAGACCCGCAGGCTA
85774686 CGAGCTGGTA
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
39 16 0.17
40 80 0.83
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
Found at i:85783567 original size:29 final size:29
Alignment explanation
Indices: 85783534--85783665 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
85783524 GTGACGAGAT
*
85783534 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
85783563 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
85783592 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
85783621 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
85783650 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
85783666 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:85785264 original size:40 final size:41
Alignment explanation
Indices: 85785220--85785332 Score: 119
Period size: 40 Copynumber: 2.8 Consensus size: 41
85785210 TGATACTTGA
85785220 GGAATTGTATCCGGGCTTAAAGACCCGTAGGCTAT-ATGCT
1 GGAATTGTATCCGGGCTTAAAGACCCGTAGGCTATCATGCT
** * *
85785260 GGAATAT-TATCTTGGCTTAAAGACCCGCAGGCT-TCATGTT
1 GGAAT-TGTATCCGGGCTTAAAGACCCGTAGGCTATCATGCT
* *
85785300 AGAA-TGCTATCCGGGC-TAGAGACCCGTAGGCTA
1 GGAATTG-TATCCGGGCTTAAAGACCCGTAGGCTA
85785333 CGAGCTGGTA
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
38 1 0.02
39 15 0.25
40 42 0.71
41 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (41 bp):
GGAATTGTATCCGGGCTTAAAGACCCGTAGGCTATCATGCT
Found at i:85787570 original size:40 final size:40
Alignment explanation
Indices: 85787500--85787723 Score: 299
Period size: 40 Copynumber: 5.5 Consensus size: 40
85787490 AAACCAAGTA
* * *
85787500 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
85787539 CCTCCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
85787579 CCTTCGGGACTTAGACCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
85787619 CCTTCGGGACTTAGCCCGGTTATCATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGG--AT-ATAGTAACTCGCACAAATG
*
85787662 CCTTCGGGACTTGGCCCGGTTATCATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG--AT-ATAGTAACTCGCACAAATG
*
85787705 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
85787724 TTATCATCCG
Statistics
Matches: 168, Mismatches: 12, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
39 13 0.08
40 77 0.46
42 2 0.01
43 76 0.45
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:85787661 original size:43 final size:43
Alignment explanation
Indices: 85787526--85787730 Score: 305
Period size: 43 Copynumber: 4.9 Consensus size: 43
85787516 GGATATAGCT
* * *
85787526 ACTCGCTCAACTGCCTCCGGGACTTAGCCCGG--AT-ATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
*
85787566 ACTCGCACAAATGCCTTCGGGACTTAGACCGG--AT-ATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
85787606 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
* *
85787649 ACTCACACAAATGCCTTCGGGACTTGGCCCGGTTATCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
*
85787692 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGTTATCAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCAT
85787731 CCGAATATTC
Statistics
Matches: 152, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
40 67 0.44
42 2 0.01
43 83 0.55
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (43 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
Found at i:85787716 original size:86 final size:83
Alignment explanation
Indices: 85787500--85787730 Score: 319
Period size: 86 Copynumber: 2.8 Consensus size: 83
85787490 AAACCAAGTA
* * * *
85787500 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTGCCTCCGGGACTTAGCCCGG--AT-
1 CCTTCGGGACTTAGACCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATC
*
85787560 ATAGTAACTCGCACAAATG
65 ATAGTAACTCACACAAATG
85787579 CCTTCGGGACTTAGACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCA
1 CCTTCGGGACTTAGACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCA
85787644 TAGTAACTCACACAAATG
66 TAGTAACTCACACAAATG
* * *
85787662 CCTTCGGGACTTGGCCCGGTTATCATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGTTA
1 CCTTCGGGACTTAGACCGG--AT-ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA
85787727 TCAT
63 TCAT
85787731 CCGAATATTC
Statistics
Matches: 136, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
79 14 0.10
80 39 0.29
82 2 0.01
83 35 0.26
85 2 0.01
86 44 0.32
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (83 bp):
CCTTCGGGACTTAGACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCA
TAGTAACTCACACAAATG
Found at i:85789596 original size:40 final size:39
Alignment explanation
Indices: 85789552--85789732 Score: 220
Period size: 39 Copynumber: 4.6 Consensus size: 39
85789542 GTTCAAAACA
* ** * *
85789552 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGTTATCATAACTCGCACAATTG
* * *
85789592 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGTTATCATAACTCGCACAATTG
* *
85789632 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGTTATCATAACTCGCACAATTG
* *
85789671 CCTTCGGGCTTAGCCCGG-TATCATAGCTCGCATAATTG
1 CCTTCGGGCTTAGCCCGGTTATCATAACTCGCACAATTG
*
85789709 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGTTATCA
85789733 CTCGAACATT
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 37 0.29
39 50 0.39
40 40 0.31
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGTTATCATAACTCGCACAATTG
Found at i:85789700 original size:38 final size:39
Alignment explanation
Indices: 85789582--85789732 Score: 232
Period size: 39 Copynumber: 3.9 Consensus size: 39
85789572 TATGGTAACC
* * * *
85789582 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
85789622 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
85789661 CGCACAATTGCCTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
85789699 CGCATAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
85789733 CTCGAACATT
Statistics
Matches: 104, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
38 37 0.36
39 50 0.48
40 17 0.16
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:85789717 original size:77 final size:79
Alignment explanation
Indices: 85789582--85789732 Score: 234
Period size: 77 Copynumber: 1.9 Consensus size: 79
85789572 TATGGTAACC
85789582 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
*
85789647 CGGGTATCATAGCT
66 CGGATATCATAGCT
* * * * *
85789661 CGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCATAGCTCGCATAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
85789724 CGGATATCA
66 CGGATATCA
85789733 CTCGAACATT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
77 40 0.61
78 9 0.14
79 17 0.26
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.25
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:85798902 original size:42 final size:42
Alignment explanation
Indices: 85798676--85798899 Score: 326
Period size: 40 Copynumber: 5.5 Consensus size: 42
85798666 AAACCAAGTA
* * *
85798676 CCTTCGGGATTTAG-CCGG--ATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGTTATATAG-TAACTCGCACAAATG
85798715 CCTTCGGGACTTAGCCCGG--ATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATATAGTAACTCGCACAAATG
85798755 CCTTCGGGACTTAGCCCGG--ATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATATAGTAACTCGCACAAATG
85798795 CCTTCGGGACTTAGCCCGGTTATATAGTAACTCG-ACAAATG
1 CCTTCGGGACTTAGCCCGGTTATATAGTAACTCGCACAAATG
85798836 CCTTCGGGACTT-GCCCGGTTATCATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTAT-ATAGTAACTCGCACAAATG
85798878 CCTTC-GGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
85798900 CATCCGAATA
Statistics
Matches: 175, Mismatches: 3, Indels: 11
0.93 0.02 0.06
Matches are distributed among these distances:
39 14 0.08
40 90 0.51
41 36 0.21
42 35 0.20
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (42 bp):
CCTTCGGGACTTAGCCCGGTTATATAGTAACTCGCACAAATG
Found at i:85809880 original size:28 final size:29
Alignment explanation
Indices: 85809840--85809912 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 29
85809830 CCTCCGAGCT
** * *
85809840 CGCACACCCAGTGCCGTAT-TTTTCAGCT
1 CGCACACTTAGTGCCGTATATTTCCAGCA
* *
85809868 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCA
85809897 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
85809913 ATCTCGTCAC
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 15 0.42
29 21 0.58
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:85817713 original size:29 final size:29
Alignment explanation
Indices: 85817681--85817758 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
85817671 ATACCCTCCG
** *
85817681 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
85817710 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
85817739 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
85817759 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:85822331 original size:46 final size:46
Alignment explanation
Indices: 85822279--85822544 Score: 202
Period size: 46 Copynumber: 5.7 Consensus size: 46
85822269 TTGGGCATCT
*
85822279 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGCCC
* * * *
85822325 GAACTCGTTGGGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGGC--CC
* * * * *
85822372 GAATTTGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGCCC
* * * * * *
85822418 TAACTCGTTGAGTTGTGTCCAAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGGC--CC
* * * *
85822465 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGCCC
* * * *
85822511 GAGCTCGTTTAGTTGAGTCCAAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85822545 GCGGGTTACA
Statistics
Matches: 168, Mismatches: 38, Indels: 28
0.72 0.16 0.12
Matches are distributed among these distances:
43 10 0.06
45 10 0.06
46 80 0.48
47 49 0.29
48 10 0.06
50 9 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGCCC
Found at i:85822443 original size:93 final size:93
Alignment explanation
Indices: 85822272--85822537 Score: 399
Period size: 93 Copynumber: 2.9 Consensus size: 93
85822262 AGGATATTTG
* * * *
85822272 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGGG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCTAACTCGTTGAG
*
85822337 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* * *
85822365 GGCATCCGAATTTGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCTAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCTAACTCGTTGAG
*
85822430 TTGTGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* * * *
85822458 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCT-AACTCGTTGA
85822522 GTTGAGTCCAAGTTCG
65 GTTGAGTCCAAGTTCG
85822538 CTTATGGGCG
Statistics
Matches: 155, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
92 3 0.02
93 152 0.98
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCTAACTCGTTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:85824373 original size:28 final size:29
Alignment explanation
Indices: 85824274--85824372 Score: 150
Period size: 28 Copynumber: 3.5 Consensus size: 29
85824264 AATGAGATTG
85824274 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
*
85824302 GCACTAAGTGTGAGAGTTTGAATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
*
85824331 GCACTAAGTGTGCGGGTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
85824359 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
85824373 GACTTACTGT
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
28 33 0.50
29 32 0.48
30 1 0.02
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.32
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:85832095 original size:27 final size:29
Alignment explanation
Indices: 85831997--85832094 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
85831987 AATGAGATTG
85831997 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
85832025 GCACTAAGTGTGCGAGTTTGAATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
85832054 GCACTAAGTGTGCG-GTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
85832081 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
85832095 GACTTACTGT
Statistics
Matches: 68, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
27 15 0.22
28 29 0.43
29 24 0.35
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:85839424 original size:27 final size:26
Alignment explanation
Indices: 85839380--85839431 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
85839370 CTCGCTGCAA
*
85839380 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
85839407 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
85839432 GAGCTCGCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:85839492 original size:67 final size:67
Alignment explanation
Indices: 85839361--85839498 Score: 190
Period size: 67 Copynumber: 2.1 Consensus size: 67
85839351 GAGGAAGCGT
* * * *
85839361 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATATGTTCTGGTGACCTAGCCACAA
85839426 TA
66 TA
* *
85839428 TCTGG-AG-CTCGCTGCAATCTGGTGGCTTCGCCACATATATATATGTTCTGGTGGCCTAGCCAC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCAC--ATATATATGTTCTGGTGACCTAGCCAC
85839491 AATA
64 AATA
85839495 TCTG
1 TCTG
85839499 TATCTGGTGA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
65 26 0.41
66 2 0.03
67 35 0.56
ACGTcount: A:0.19, C:0.28, G:0.23, T:0.30
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATATGTTCTGGTGACCTAGCCACAA
TA
Found at i:85852663 original size:39 final size:41
Alignment explanation
Indices: 85852560--85852746 Score: 219
Period size: 39 Copynumber: 4.7 Consensus size: 41
85852550 TATTCGAATG
* * *
85852560 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-TT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA
* *
85852600 ATATCCTGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTA
* *
85852641 AT-TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
85852680 A-ATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT-
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
* *
85852718 ATAACCGGGCTATGTCCCGAAGGCATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
85852747 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 14
0.82 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 68 0.54
40 47 0.37
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
Found at i:85854575 original size:19 final size:19
Alignment explanation
Indices: 85854551--85854596 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
85854541 TTTTGGGCTT
*
85854551 AATGGGCCGAAAATGGGCC
1 AATGGGCCGAAAACGGGCC
85854570 AATGGGCCGAAAACGGGCC
1 AATGGGCCGAAAACGGGCC
85854589 AATGGGCC
1 AATGGGCC
85854597 AACGGGCCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.30, C:0.24, G:0.37, T:0.09
Consensus pattern (19 bp):
AATGGGCCGAAAACGGGCC
Found at i:85856533 original size:71 final size:71
Alignment explanation
Indices: 85856447--85856610 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
85856437 CGATTTGTCT
85856447 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85856512 CTTTCA
66 CTTTCA
85856518 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85856583 CTTTCA
66 CTTTCA
85856589 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
85856611 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:85856648 original size:71 final size:70
Alignment explanation
Indices: 85856447--85856644 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
85856437 CGATTTGTCT
* * * *
85856447 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
85856512 CTTTCA
65 CTTTCA
* * * *
85856518 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
85856583 CTTTCA
65 CTTTCA
* *
85856589 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
85856645 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:85864111 original size:71 final size:71
Alignment explanation
Indices: 85864025--85864188 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
85864015 CGATTTGTCT
85864025 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85864090 CTTTCA
66 CTTTCA
85864096 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85864161 CTTTCA
66 CTTTCA
85864167 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
85864189 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:85864226 original size:71 final size:70
Alignment explanation
Indices: 85864025--85864222 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
85864015 CGATTTGTCT
* * * *
85864025 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
85864090 CTTTCA
65 CTTTCA
* * * *
85864096 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
85864161 CTTTCA
65 CTTTCA
* *
85864167 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
85864223 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:85867434 original size:21 final size:21
Alignment explanation
Indices: 85867394--85867434 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
85867384 AACCGATAAC
* *
85867394 TTAAGAAACTTTCACGAAACT
1 TTAAAAAACTTTCACAAAACT
*
85867415 TTAAAAAACTTTCTCAAAAC
1 TTAAAAAACTTTCACAAAAC
85867435 AGGGGACACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.20, G:0.05, T:0.29
Consensus pattern (21 bp):
TTAAAAAACTTTCACAAAACT
Found at i:85869126 original size:42 final size:44
Alignment explanation
Indices: 85869049--85869152 Score: 117
Period size: 42 Copynumber: 2.4 Consensus size: 44
85869039 CATCAACTTA
* *
85869049 TGATTTATGTGTAATACCACGTCTAGGACATTGGCATCG-TATT
1 TGATTTATGTGTAAGACCACGTCTAGGACAGTGGCATCGATATT
* *
85869092 TGATTT-TGTGTAAGACC-CTGTCTGGGATAGTGGCATCGATATT
1 TGATTTATGTGTAAGACCAC-GTCTAGGACAGTGGCATCGATATT
**
85869135 TGA-TTACATGTAAGACCA
1 TGATTTATGTGTAAGACCA
85869153 TATCTGGGAC
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.02
42 28 0.55
43 22 0.43
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (44 bp):
TGATTTATGTGTAAGACCACGTCTAGGACAGTGGCATCGATATT
Found at i:85869169 original size:43 final size:43
Alignment explanation
Indices: 85869000--85869170 Score: 127
Period size: 43 Copynumber: 4.0 Consensus size: 43
85868990 CATAGGATCT
* * *
85869000 GATATGTGATTTCATGTAAGGCCACATCTGGGACGTTGGCATC
1 GATATTTGATTACATGTAAGACCACATCTGGGACGTTGGCATC
** * * * *
85869043 -A-ACTTATGATTTATGTGTAATACCACGTCTAGGACATTGGCATC
1 GATA-TT-TGA-TTACATGTAAGACCACATCTGGGACGTTGGCATC
*** * *
85869087 G-TATTTGATTTTGTGTAAGACC-CTGTCTGGGATAG-TGGCATC
1 GATATTTGATTACATGTAAGACCAC-ATCTGGGA-CGTTGGCATC
*
85869129 GATATTTGATTACATGTAAGACCATATCTGGGACGTTGGCAT
1 GATATTTGATTACATGTAAGACCACATCTGGGACGTTGGCAT
85869171 TGTATGAGCT
Statistics
Matches: 98, Mismatches: 20, Indels: 20
0.71 0.14 0.14
Matches are distributed among these distances:
41 2 0.02
42 30 0.31
43 37 0.38
44 28 0.29
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCACATCTGGGACGTTGGCATC
Found at i:85875561 original size:29 final size:29
Alignment explanation
Indices: 85875519--85875576 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
85875509 ATTCACAAGC
*
85875519 ATATTTGACGATATTTCATAACCCAATTG
1 ATATTTGACCATATTTCATAACCCAATTG
85875548 ATATTTGACCATATTTCATAACCCAATTG
1 ATATTTGACCATATTTCATAACCCAATTG
85875577 GCAAACATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (29 bp):
ATATTTGACCATATTTCATAACCCAATTG
Found at i:85877637 original size:22 final size:21
Alignment explanation
Indices: 85877580--85877638 Score: 73
Period size: 24 Copynumber: 2.6 Consensus size: 21
85877570 TGGGCTGATA
85877580 AACAATAAGCTCTATTGAGCT
1 AACAATAAGCTCTATTGAGCT
*
85877601 AAAAATGGTAAGCTCTATTGAGCT
1 AACAA---TAAGCTCTATTGAGCT
85877625 GAACAATAAGCTCT
1 -AACAATAAGCTCT
85877639 TACGAGCTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
21 4 0.12
22 8 0.25
24 16 0.50
25 4 0.12
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (21 bp):
AACAATAAGCTCTATTGAGCT
Found at i:85880620 original size:18 final size:20
Alignment explanation
Indices: 85880584--85880630 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
85880574 AGTTTTAAGT
85880584 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
85880604 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
85880623 ATGATATA
1 AT-ATATA
85880631 ACCTGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:85881140 original size:50 final size:50
Alignment explanation
Indices: 85881077--85881360 Score: 243
Period size: 50 Copynumber: 5.7 Consensus size: 50
85881067 TTAACTTCGA
* * *
85881077 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTTAAG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAAG
* *
85881127 TCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGAT--TTATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTA-A-G
* ** * * ** *
85881177 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGTTAACTT-TG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-GGTTAAG
* * *
85881227 ATCACGTGTGTAGTACTAAGTGCAAGCTACTACT-TGTATCAGATGGTTAAG
1 -TCACATGTGTAGTACTAAGTGCAGGCTACTA-TGTGTACCAGATGGTTAAG
** * * * * * * * *
85881278 TCATGTGTGTAGTACTGACTGTAGGCTTCTACGTGTACCAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAAG
* *
85881328 TCGCATGTGTAGTACTAAGTGCAGGTTACTATG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATG
85881361 CTACTAGAGA
Statistics
Matches: 181, Mismatches: 44, Indels: 18
0.74 0.18 0.07
Matches are distributed among these distances:
48 3 0.02
49 1 0.01
50 140 0.77
51 34 0.19
52 1 0.01
53 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAAG
Found at i:85881248 original size:151 final size:151
Alignment explanation
Indices: 85880979--85881361 Score: 526
Period size: 151 Copynumber: 2.6 Consensus size: 151
85880969 ATTTATTGTG
* * * * **
85880979 AGTCACGTGTGCAGTACTAAGTTCAGGCTACTACGGGTACTAGATTGATAGGTCAAATGTGTAG-
1 AGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * *
85881043 --T--GTGCAAGCTACTATGCGTACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCT
66 ACTAAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCT
85881104 ACTA-TGTGTATCAGATGGTTA
131 ACTACT-TGTATCAGATGGTTA
* *
85881125 AGTCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTTATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* *
85881190 ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTTGATCACGTGTGTAGTACTAAGTGCAAGCT
66 ACTAAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCT
85881255 ACTACTTGTATCAGATGGTTA
131 ACTACTTGTATCAGATGGTTA
* * * ** *
85881276 AGTCATGTGTGTAGTACTGACTGTAGGCTTCTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
85881341 ACTAAGTGCAGGTTACTATGC
66 ACTAAGTGCAGGCTACTATGC
85881362 TACTAGAGAG
Statistics
Matches: 208, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
146 56 0.27
149 1 0.00
151 150 0.72
152 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCT
ACTACTTGTATCAGATGGTTA
Found at i:85886363 original size:24 final size:24
Alignment explanation
Indices: 85886333--85886431 Score: 162
Period size: 24 Copynumber: 4.1 Consensus size: 24
85886323 GAATGTGACT
*
85886333 ATAGCAAATCGCACACATAGTGCT
1 ATAGCAAATCGCACACATAGTGCC
85886357 ATAGCAAATCGCACACATAGTGCC
1 ATAGCAAATCGCACACATAGTGCC
*
85886381 ATAGTAAATCGCACACATAGTGCC
1 ATAGCAAATCGCACACATAGTGCC
* *
85886405 ATAGTAAACCGCACACATAGTGCC
1 ATAGCAAATCGCACACATAGTGCC
85886429 ATA
1 ATA
85886432 TGGTCTTTGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.38, C:0.26, G:0.16, T:0.19
Consensus pattern (24 bp):
ATAGCAAATCGCACACATAGTGCC
Found at i:85889916 original size:21 final size:20
Alignment explanation
Indices: 85889888--85889926 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
85889878 TCTTTGAAAC
85889888 AGGGAACACGCCCGTGTGGA
1 AGGGAACACGCCCGTGTGGA
85889908 AGGGCAACACGCCCGTGTG
1 AGGG-AACACGCCCGTGTG
85889927 ACCAATTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.10
Consensus pattern (20 bp):
AGGGAACACGCCCGTGTGGA
Found at i:85891219 original size:50 final size:50
Alignment explanation
Indices: 85891156--85891437 Score: 264
Period size: 50 Copynumber: 5.6 Consensus size: 50
85891146 TTAACTTCGA
* * * *
85891156 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTTAAG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAG
*
85891206 TCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGAT--TTATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTA-A-G
* * ** * * ** *
85891256 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGTTAACTT-CG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAAG
* *
85891306 ATCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAAG
1 -TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAG
** * * * * * * *
85891357 TCATGTGTGTAGTACTGACTGTAGGCTTCTACGTGTACCAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAG
* *
85891407 TCGCATGTGTAGTACTAAGTGCAGGTTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
85891438 TGCTACTAGA
Statistics
Matches: 182, Mismatches: 43, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
48 3 0.02
49 1 0.01
50 140 0.77
51 36 0.20
53 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAG
Found at i:85891327 original size:151 final size:151
Alignment explanation
Indices: 85891058--85891440 Score: 533
Period size: 151 Copynumber: 2.6 Consensus size: 151
85891048 ATTCGTTGTG
* * * * * *
85891058 AGTCACGTGTGCAGTACTAAGTTCAGGCTAGTACGGGTACTAGATTGATAGGTCACATGTGTAG-
1 AGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * * *
85891122 --T--GTGCAAGCTACTATGCGTACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCT
66 ACTAAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGCAAGCT
*
85891183 ACTATGTGTATCAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
* *
85891204 AGTCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTTATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
85891269 ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAAGCT
66 ACTAAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGCAAGCT
85891334 ACTACGTGTATCAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
* * * ** *
85891355 AGTCATGTGTGTAGTACTGACTGTAGGCTTCTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
85891420 ACTAAGTGCAGGTTACTATGC
66 ACTAAGTGCAGGCTACTATGC
85891441 TACTAGAGAG
Statistics
Matches: 208, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
146 56 0.27
149 1 0.00
151 151 0.73
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGCAAGCT
ACTACGTGTATCAGATGGTTA
Found at i:85892472 original size:77 final size:77
Alignment explanation
Indices: 85892381--85892535 Score: 283
Period size: 77 Copynumber: 2.0 Consensus size: 77
85892371 GTTGAAGATC
* *
85892381 GCCGGAGGCAACCTCACACTATCAAGCTGCTTCCTTTGGAGTATTGATGACTCTTAATGTCTTCA
1 GCCGGAGGCAACCTCACACTATCAAGCTGCCTCCTTTGGAGTATTGATGACTCTTAATGTATTCA
85892446 AGTGAGTCGCAT
66 AGTGAGTCGCAT
85892458 GCCGGAGGCAACCTCACACTATCAAGCTGCCTCCTTTGGAGTATTGATGACTCTTAATGTATTCA
1 GCCGGAGGCAACCTCACACTATCAAGCTGCCTCCTTTGGAGTATTGATGACTCTTAATGTATTCA
*
85892523 TGTGAGTCGCAT
66 AGTGAGTCGCAT
85892535 G
1 G
85892536 TATAGGGACT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (77 bp):
GCCGGAGGCAACCTCACACTATCAAGCTGCCTCCTTTGGAGTATTGATGACTCTTAATGTATTCA
AGTGAGTCGCAT
Found at i:85894739 original size:21 final size:20
Alignment explanation
Indices: 85894711--85894749 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
85894701 TCTTTGAAAC
85894711 AGGGAACACGCCCGTGTGGA
1 AGGGAACACGCCCGTGTGGA
85894731 AGGGCAACACGCCCGTGTG
1 AGGG-AACACGCCCGTGTG
85894750 ACCAATTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.10
Consensus pattern (20 bp):
AGGGAACACGCCCGTGTGGA
Found at i:85896011 original size:46 final size:47
Alignment explanation
Indices: 85895955--85896075 Score: 120
Period size: 46 Copynumber: 2.6 Consensus size: 47
85895945 CTGTGCCGTT
* * *
85895955 GCCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCGAGGCCGAA
1 GCCATGTCCCAGACATGTCTTACACTGGCACT-CATCTCAAGGCCGAA
* * * * * * *
85896002 G-CATGTCCCAAAAATGTCTTATACTAGCACTCATCTCAATGTCGAT
1 GCCATGTCCCAGACATGTCTTACACTGGCACTCATCTCAAGGCCGAA
85896048 GCCATGTCCCAGACATGGTCTTACACTG
1 GCCATGTCCCAGACAT-GTCTTACACTG
85896076 CCTCTCAAAA
Statistics
Matches: 57, Mismatches: 14, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
46 34 0.60
47 14 0.25
48 9 0.16
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
GCCATGTCCCAGACATGTCTTACACTGGCACTCATCTCAAGGCCGAA
Found at i:85897768 original size:18 final size:18
Alignment explanation
Indices: 85897745--85897787 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
85897735 TAAATCTAAG
85897745 GACTTTCCTCCCCGGGGA
1 GACTTTCCTCCCCGGGGA
85897763 GACTTTCCTCCCCGGGGA
1 GACTTTCCTCCCCGGGGA
*
85897781 TACTTTC
1 GACTTTC
85897788 AAAAATACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.12, C:0.37, G:0.23, T:0.28
Consensus pattern (18 bp):
GACTTTCCTCCCCGGGGA
Found at i:85901289 original size:27 final size:27
Alignment explanation
Indices: 85901248--85901301 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
85901238 TGTCATGTGA
* *
85901248 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
85901275 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
85901302 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:85901627 original size:49 final size:50
Alignment explanation
Indices: 85901547--85901729 Score: 208
Period size: 49 Copynumber: 3.7 Consensus size: 50
85901537 ATCTATTGTG
*
85901547 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * ** *
85901597 -GGTCGCATGTGTAGTACTAAGTGCTGGCTACTATGCATACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
85901647 CGATCACGTGTGTAGTACTAACTGCA-GCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
85901696 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
85901730 TGCATACCAG
Statistics
Matches: 107, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
49 64 0.60
50 23 0.21
51 20 0.19
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:85901726 original size:100 final size:100
Alignment explanation
Indices: 85901550--85901742 Score: 280
Period size: 100 Copynumber: 1.9 Consensus size: 100
85901540 TATTGTGAGG
* * *
85901550 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* *
85901615 AAGTGCTGGCTACTATGCATACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCATACCAGATAACTTCGA
* ** **
85901650 TCACGTGTGTAGTACTAACTGCA-GCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTAC
1 TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
85901714 TAAGTGCAGGCTACTATGCATACCAGATA
65 TAAGTGCAGGCTACTATGCATACCAGATA
85901743 GCCTTGTCTA
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 19 0.23
100 63 0.77
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCATACCAGATAACTTCGA
Found at i:85902112 original size:83 final size:83
Alignment explanation
Indices: 85901973--85902135 Score: 308
Period size: 83 Copynumber: 2.0 Consensus size: 83
85901963 TTTAGTAGTA
*
85901973 AAACAGTGTTGGACAGCTGCAGTTGCGTGACTTTGAAATTTCACCAAAAATTGTGTAAGTTGAAT
1 AAACAGTGTTGGACAGCAGCAGTTGCGTGACTTTGAAATTTCACCAAAAATTGTGTAAGTTGAAT
85902038 TAAATTTCAAAAAAAATT
66 TAAATTTCAAAAAAAATT
85902056 AAACAGTGTTGGACAGCAGCAGTTGCGTGACTTTGAAATTTCACCAAAAATTGTGTAAGTTGAAT
1 AAACAGTGTTGGACAGCAGCAGTTGCGTGACTTTGAAATTTCACCAAAAATTGTGTAAGTTGAAT
*
85902121 TAGATTTCAAAAAAA
66 TAAATTTCAAAAAAA
85902136 TATGGAATTA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
83 78 1.00
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (83 bp):
AAACAGTGTTGGACAGCAGCAGTTGCGTGACTTTGAAATTTCACCAAAAATTGTGTAAGTTGAAT
TAAATTTCAAAAAAAATT
Found at i:85905093 original size:40 final size:40
Alignment explanation
Indices: 85905019--85905196 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
85905009 GAGTCACGTA
** *
85905019 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
85905058 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
85905098 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
85905138 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
85905178 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
85905197 GTATCATTCA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:85910353 original size:27 final size:27
Alignment explanation
Indices: 85910312--85910365 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
85910302 TGTCATGTGA
* *
85910312 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
85910339 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
85910366 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:85910674 original size:23 final size:23
Alignment explanation
Indices: 85910622--85910667 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
85910612 GGTCACGTGT
*
85910622 GTAGTACTAAGTGTAGGCTACTA
1 GTAGTACTAAGTGCAGGCTACTA
85910645 GTAGTACTAAGTGCAGGCTACTA
1 GTAGTACTAAGTGCAGGCTACTA
85910668 TGCGTACCCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (23 bp):
GTAGTACTAAGTGCAGGCTACTA
Found at i:85910813 original size:49 final size:49
Alignment explanation
Indices: 85910645--85910863 Score: 204
Period size: 49 Copynumber: 4.4 Consensus size: 49
85910635 TAGGCTACTA
*** * * * * *
85910645 GTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGT
1 GTAGTACTAAGTGCAGGCTACTACATGTAACGGATAA-TT-GGTCGCATAT
* * ** ** * * *
85910696 GTAGTACTAAGTGCAGACTACTACATGTATCAAATGGTTAGGTCACGTGT
1 GTAGTACTAAGTGCAGGCTACTACATGTAACGGATAATT-GGTCGCATAT
* **
85910746 GTAGTACTAAGTGCAGGCTACTACATGTAATGGATAATTGGTTTCATAT
1 GTAGTACTAAGTGCAGGCTACTACATGTAACGGATAATTGGTCGCATAT
* * *
85910795 GTAGTACTAAGTGTAGGCTACTACATGTAACGGGTAATTGGTCGCATGT
1 GTAGTACTAAGTGCAGGCTACTACATGTAACGGATAATTGGTCGCATAT
85910844 GTAGTACTAAGTGCAGGCTA
1 GTAGTACTAAGTGCAGGCTA
85910864 TTATGCATAC
Statistics
Matches: 138, Mismatches: 30, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
49 68 0.49
50 42 0.30
51 28 0.20
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (49 bp):
GTAGTACTAAGTGCAGGCTACTACATGTAACGGATAATTGGTCGCATAT
Found at i:85913325 original size:46 final size:47
Alignment explanation
Indices: 85913260--85913583 Score: 408
Period size: 46 Copynumber: 7.0 Consensus size: 47
85913250 TTATCTTTGA
* * * * *
85913260 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
* * ***
85913306 CATGTTGCCATGGTATCTTTCAACCATGTTCTTATTCATTTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
* * *
85913353 CATGTTGCCATGGTATATTTCAACCATGGTCTTATTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
* * *
85913399 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTC-TAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
*
85913445 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
* * *
85913491 TAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
* *
85913537 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
85913583 C
1 C
85913584 TTACACATTT
Statistics
Matches: 253, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
45 4 0.02
46 207 0.82
47 42 0.17
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
Found at i:85913585 original size:16 final size:16
Alignment explanation
Indices: 85913566--85913599 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
85913556 TCAACCATGG
85913566 TCTTACACATTTCATA
1 TCTTACACATTTCATA
85913582 TCTTACACATTTCATA
1 TCTTACACATTTCATA
85913598 TC
1 TC
85913600 AGGTTGCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.44
Consensus pattern (16 bp):
TCTTACACATTTCATA
Found at i:85913586 original size:62 final size:62
Alignment explanation
Indices: 85913520--85913645 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
85913510 TCAACCATGG
85913520 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
1 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
85913582 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
1 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
85913644 TC
1 TC
85913646 AGAGAGCACA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (62 bp):
TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
Found at i:85917999 original size:13 final size:13
Alignment explanation
Indices: 85917981--85918009 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
85917971 TTTAGTTTAA
85917981 TTAGTTAATTAGT
1 TTAGTTAATTAGT
85917994 TTAGTTAATTAGT
1 TTAGTTAATTAGT
85918007 TTA
1 TTA
85918010 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:85921552 original size:102 final size:102
Alignment explanation
Indices: 85921422--85921620 Score: 371
Period size: 102 Copynumber: 2.0 Consensus size: 102
85921412 CCCAAAATCA
* *
85921422 GGCTGTTACAAAGGTAAGTTCGTATGTGAATAATGCAATATGTATCATGTATAGTACTTTGTTAT
1 GGCTGTTACAAAGGTAAGTTCATATGTGAATAATGCAATATGTATCATGTATAATACTTTGTTAT
85921487 TTTGTAAATTTAAATGTTATGTTATTGATATATTTTG
66 TTTGTAAATTTAAATGTTATGTTATTGATATATTTTG
85921524 GGCTGTTACAAAGGTAAGTTCATATGTGAATAATGCAATATGTATCATGTATAATACTTTGTTAT
1 GGCTGTTACAAAGGTAAGTTCATATGTGAATAATGCAATATGTATCATGTATAATACTTTGTTAT
*
85921589 TTTGTAAATTTAAATGTTATGTTGTTGATATA
66 TTTGTAAATTTAAATGTTATGTTATTGATATA
85921621 AGTAAGCCTT
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 94 1.00
ACGTcount: A:0.32, C:0.06, G:0.18, T:0.44
Consensus pattern (102 bp):
GGCTGTTACAAAGGTAAGTTCATATGTGAATAATGCAATATGTATCATGTATAATACTTTGTTAT
TTTGTAAATTTAAATGTTATGTTATTGATATATTTTG
Found at i:85921803 original size:20 final size:20
Alignment explanation
Indices: 85921775--85921812 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
85921765 CTAGGAACTA
85921775 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
85921795 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
85921813 TATGTATAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:85926141 original size:30 final size:31
Alignment explanation
Indices: 85926107--85926168 Score: 117
Period size: 30 Copynumber: 2.0 Consensus size: 31
85926097 AGAGACAAGG
85926107 CCGTGTGTCTCAATCGTGT-CTCCACACAGC
1 CCGTGTGTCTCAATCGTGTCCTCCACACAGC
85926137 CCGTGTGTCTCAATCGTGTCCTCCACACAGC
1 CCGTGTGTCTCAATCGTGTCCTCCACACAGC
85926168 C
1 C
85926169 TAGCACATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 19 0.61
31 12 0.39
ACGTcount: A:0.16, C:0.39, G:0.19, T:0.26
Consensus pattern (31 bp):
CCGTGTGTCTCAATCGTGTCCTCCACACAGC
Found at i:85935566 original size:27 final size:28
Alignment explanation
Indices: 85935510--85935579 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
85935500 AAATTTGTAC
85935510 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
85935538 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
85935565 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
85935580 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:85940830 original size:55 final size:56
Alignment explanation
Indices: 85940765--85940879 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 56
85940755 AGCATGGCTG
* *
85940765 CCAGATACAGA-AAATGTGATAGAG-TCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGATAGGGCT-ACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* *
85940821 CCAGA-ACAGATATATGTGGTAGGGCTACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGATAGGGCTACCAGAACAGATAATTTGTGGCATAGCCA
85940876 CCAG
1 CCAG
85940880 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 21 0.40
57 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGATAGGGCTACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:85940850 original size:27 final size:28
Alignment explanation
Indices: 85940790--85940879 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
85940780 GTGATAGAGT
* *
85940790 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTATGTGGCAGGGC
*
85940819 CACCAGAACAGATA-TATGTGGTAGGGC
1 CACCAGAACAGATATTATGTGGCAGGGC
* **
85940846 TACCAGAACAGATAATT-TGTGGCATAGC
1 CACCAGAACAGAT-ATTATGTGGCAGGGC
85940874 CACCAG
1 CACCAG
85940880 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 21 0.41
29 8 0.16
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.22
Consensus pattern (28 bp):
CACCAGAACAGATATTATGTGGCAGGGC
Found at i:85948428 original size:55 final size:56
Alignment explanation
Indices: 85948363--85948477 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
85948353 AGCATGGCTG
* *
85948363 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
85948419 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
85948474 CCAG
1 CCAG
85948478 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:85948440 original size:27 final size:27
Alignment explanation
Indices: 85948388--85948477 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
85948378 GTGACAGAGT
85948388 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
85948417 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
85948444 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
85948472 CACCAG
1 CACCAG
85948478 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:85948886 original size:15 final size:15
Alignment explanation
Indices: 85948866--85948896 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
85948856 CCAAAATACC
85948866 GGCTTTTCGGCATTT
1 GGCTTTTCGGCATTT
*
85948881 GGCTTTTCGGCTTTT
1 GGCTTTTCGGCATTT
85948896 G
1 G
85948897 CCGATCTAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.03, C:0.19, G:0.29, T:0.48
Consensus pattern (15 bp):
GGCTTTTCGGCATTT
Found at i:85950664 original size:30 final size:30
Alignment explanation
Indices: 85950630--85950690 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
85950620 TCCTTAACTC
85950630 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * * * *
85950660 AAACTTTTTCATATTTACACTTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
85950690 A
1 A
85950691 GCTCAGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.03, T:0.43
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:85955340 original size:29 final size:30
Alignment explanation
Indices: 85955294--85955353 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
85955284 GTCTTAACTC
*
85955294 AAACTTTTGCAAAATTACAATTTTGCGCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
85955324 AAAC-TTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
85955353 A
1 A
85955354 GCTCAGGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 22 0.85
30 4 0.15
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:85956721 original size:46 final size:46
Alignment explanation
Indices: 85956668--85956842 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
85956658 TATTTGGGCA
85956668 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
85956714 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
85956761 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
85956807 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC-TATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85956843 GCGGTTACAT
Statistics
Matches: 111, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
43 4 0.04
45 7 0.06
46 61 0.55
47 33 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:85956823 original size:93 final size:93
Alignment explanation
Indices: 85956664--85956835 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85956654 GGGATATTTG
* *
85956664 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
85956729 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
85956757 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
85956822 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
85956836 ACTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:85965518 original size:40 final size:39
Alignment explanation
Indices: 85965433--85965542 Score: 105
Period size: 40 Copynumber: 2.7 Consensus size: 39
85965423 TGGTAATTAC
* * * *
85965433 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGG-TAAGACCCGAAGGCATTTGTGCAAGTGACGAA
* *
85965473 GTCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTG-CGAA
1 ATCCGGG-TAAGACCCGAAGGCATTTGTGC-AAGTGACGAA
* *
85965513 ATCCGGGTCAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGT-AAGACCCGAAGGCATTTGTGC
85965543 GGGTTACCAT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
39 1 0.02
40 54 0.93
41 3 0.05
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.22
Consensus pattern (39 bp):
ATCCGGGTAAGACCCGAAGGCATTTGTGCAAGTGACGAA
Found at i:85967093 original size:40 final size:40
Alignment explanation
Indices: 85967044--85967194 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
85967034 ATAACCACGT
*
85967044 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
* * *
85967084 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAGAATG--TCTC
* * *
85967124 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-C
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
* * *
85967163 AGCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATA
85967195 TCATTCAATT
Statistics
Matches: 91, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 83 0.91
41 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
Found at i:85967178 original size:80 final size:80
Alignment explanation
Indices: 85967044--85967193 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
85967034 ATAACCACGT
* *
85967044 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
85967109 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
85967124 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
85967187 CCCGGAT
64 CCCGGAT
85967194 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:85968913 original size:57 final size:57
Alignment explanation
Indices: 85968850--85968962 Score: 226
Period size: 57 Copynumber: 2.0 Consensus size: 57
85968840 ATCCCGACTA
85968850 GGGTCAATTTTGGGCTGTCACAAATGCACTTGTGAAACTTCCCAATAACAAGGTATC
1 GGGTCAATTTTGGGCTGTCACAAATGCACTTGTGAAACTTCCCAATAACAAGGTATC
85968907 GGGTCAATTTTGGGCTGTCACAAATGCACTTGTGAAACTTCCCAATAACAAGGTAT
1 GGGTCAATTTTGGGCTGTCACAAATGCACTTGTGAAACTTCCCAATAACAAGGTAT
85968963 GTGTTGTGTG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28
Consensus pattern (57 bp):
GGGTCAATTTTGGGCTGTCACAAATGCACTTGTGAAACTTCCCAATAACAAGGTATC
Found at i:85974018 original size:35 final size:37
Alignment explanation
Indices: 85973947--85974044 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
85973937 ATAATCTTCA
85973947 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
85973985 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
85974020 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
85974045 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:85974044 original size:17 final size:19
Alignment explanation
Indices: 85973947--85974037 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
85973937 ATAATCTTCA
85973947 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
85973966 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
85973985 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
85974002 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
85974020 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
85974038 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:85974063 original size:22 final size:22
Alignment explanation
Indices: 85973947--85974060 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
85973937 ATAATCTTCA
85973947 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
85973966 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
85973985 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
85974002 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
85974020 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
85974042 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
85974061 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:85974350 original size:17 final size:17
Alignment explanation
Indices: 85974326--85974360 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
85974316 ATGTTTCCCG
*
85974326 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
85974344 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
85974361 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:85986347 original size:137 final size:136
Alignment explanation
Indices: 85986102--85986379 Score: 493
Period size: 137 Copynumber: 2.0 Consensus size: 136
85986092 GATCCAAGAT
*
85986102 GATTTGGCATCTCTGTATTAGACGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGTT
1 GATTTGGCATCTCTGTATTAGACGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATGTGTT
* *
85986167 TACATCGAAGCAGATCCAAGATGACAGATTTAGCATCTCTGTATTAGACGGGGAGCAAATCGGAG
66 TACATCAAAGCAGATCCAAGATGACAGATTTAGCAACTCTGTATTAGACGGGGAGCAAATCGGAG
85986232 ATAACA
131 ATAACA
* *
85986238 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCAAAGACATAGTAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATGTGT
*
85986303 TTACATCAAAGCAGATCCAAGATGACAGATTTGGCAACTCTGTATTAGACGGGGAGCAAATCGGA
65 TTACATCAAAGCAGATCCAAGATGACAGATTTAGCAACTCTGTATTAGACGGGGAGCAAATCGGA
85986368 GATAACA
130 GATAACA
85986375 GATTT
1 GATTT
85986380 TGTAACATCC
Statistics
Matches: 135, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
136 23 0.17
137 112 0.83
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (136 bp):
GATTTGGCATCTCTGTATTAGACGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATGTGTT
TACATCAAAGCAGATCCAAGATGACAGATTTAGCAACTCTGTATTAGACGGGGAGCAAATCGGAG
ATAACA
Found at i:86000471 original size:45 final size:45
Alignment explanation
Indices: 86000359--86000492 Score: 189
Period size: 45 Copynumber: 3.0 Consensus size: 45
86000349 TTGGGGTGTT
**
86000359 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-A
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATA
** * *
86000403 GTAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCAAAGATA
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATA
* *
86000448 ACATATTTGGCATCTCTGTATTAGACGGGAAGCAGATCAAAGATA
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATA
86000493 GAAGATATCG
Statistics
Matches: 77, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
44 37 0.48
45 40 0.52
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (45 bp):
ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATA
Found at i:86000873 original size:19 final size:19
Alignment explanation
Indices: 86000849--86000922 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
86000839 ATAATCTTCA
86000849 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86000868 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
86000887 ATGAT-TGCAATCGTAGAT
1 ATGATATGCAATCTTAGAT
86000905 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
86000923 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 17 0.33
19 35 0.67
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:86000896 original size:37 final size:38
Alignment explanation
Indices: 86000849--86000929 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 38
86000839 ATAATCTTCA
*
86000849 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATATGCAATCGTAGATATGATATGCAATCTTAGAT
86000887 ATGAT-TGCAATCGTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCGTAGATATGATATGCAATCTTAGAT
86000923 A-GATATG
1 ATGATATG
86000930 ATTTTGTAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 30 0.73
38 5 0.12
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.35
Consensus pattern (38 bp):
ATGATATGCAATCGTAGATATGATATGCAATCTTAGAT
Found at i:86000948 original size:22 final size:22
Alignment explanation
Indices: 86000849--86000945 Score: 88
Period size: 19 Copynumber: 4.8 Consensus size: 22
86000839 ATAATCTTCA
86000849 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86000868 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
86000887 ATGAT-TGCAATC---GTAGAT
1 ATGATATGCAATCTTAGAAGAT
86000905 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
86000927 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
86000946 GATTTAATTT
Statistics
Matches: 68, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
18 16 0.24
19 31 0.46
22 9 0.13
23 12 0.18
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:86001237 original size:18 final size:17
Alignment explanation
Indices: 86001214--86001247 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
86001204 TTTCCCGGAC
*
86001214 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
86001232 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
86001248 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:86006463 original size:46 final size:46
Alignment explanation
Indices: 86006396--86006565 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
86006386 TGTAATCCGC
86006396 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
* * * *
86006442 CCATAAGTGAACTCAGACTCAACTCAAAGAGCTCAGATGCCTGGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGA---C--GTTCGCAT
* * * *
86006492 -C-TAA-CGAACTCGGGCTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
* *
86006535 CCATAAGTGAACTCGAACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
86006566 TTCGGATGCC
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 3 0.03
46 55 0.55
47 24 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
Found at i:86006512 original size:93 final size:93
Alignment explanation
Indices: 86006403--86006575 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
86006393 CGCCCATAAG
*
86006403 CGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTC-AGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGA-ACTCAACTC
86006467 AAAGAGCTCAGATGCCTGGTTACATCTAA
65 AAAGAGCTCAGATGCCTGGTTACATCTAA
* * *
86006496 CGAACTCGGGCTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
* * *
86006561 ACGAGTTCGGATGCC
66 AAGAGCTCAGATGCC
86006576 CAAATATCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
AAGAGCTCAGATGCCTGGTTACATCTAA
Found at i:86008055 original size:42 final size:42
Alignment explanation
Indices: 86007968--86008080 Score: 113
Period size: 42 Copynumber: 2.7 Consensus size: 42
86007958 GAAAAATATC
* * * *
86007968 AAAAAGGAAGCAACATGAGAAAACAACATCTATATCTCAACA
1 AAAAAGGAATCAACTTGAGAAAGCAACATCTAGATCTCAACA
* * *
86008010 AAAAAGG-ATACAATTTGAGAAAGCAACATCTAGGT-TCAGATA
1 AAAAAGGAAT-CAACTTGAGAAAGCAACATCTAGATCTCA-ACA
* *
86008052 AAAAGGGAATCAACTTGGGAAAGCAACAT
1 AAAAAGGAATCAACTTGAGAAAGCAACAT
86008081 GTATAAGGTT
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
41 4 0.07
42 52 0.90
43 2 0.03
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.17
Consensus pattern (42 bp):
AAAAAGGAATCAACTTGAGAAAGCAACATCTAGATCTCAACA
Found at i:86016576 original size:18 final size:18
Alignment explanation
Indices: 86016549--86016585 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
86016539 CACTCCATAA
86016549 AAACCAACCTTCATAACT
1 AAACCAACCTTCATAACT
*
86016567 AAACCTACCTTCATAACT
1 AAACCAACCTTCATAACT
86016585 A
1 A
86016586 GCCCTTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.43, C:0.32, G:0.00, T:0.24
Consensus pattern (18 bp):
AAACCAACCTTCATAACT
Found at i:86016716 original size:26 final size:26
Alignment explanation
Indices: 86016687--86016857 Score: 283
Period size: 26 Copynumber: 6.7 Consensus size: 26
86016677 AAGTGCAAAT
86016687 GGGCTTATGCCCCAGTTTATTGAAAA
1 GGGCTTATGCCCCAGTTTATTGAAAA
* * **
86016713 GGGCTTATGGCCTAGTTTACCGAAAA
1 GGGCTTATGCCCCAGTTTATTGAAAA
86016739 GGGCTTATGCCCCAGTTTATTGAAAA
1 GGGCTTATGCCCCAGTTTATTGAAAA
86016765 GGGCTTATGCCCCAGTTTATTGAAAA
1 GGGCTTATGCCCCAGTTTATTGAAAA
86016791 GGGCTTATGCCCCAGTTTATTGAAAA
1 GGGCTTATGCCCCAGTTTATTGAAAA
*
86016817 GGGCTT-TGCCCCAGTTTACTGAAAA
1 GGGCTTATGCCCCAGTTTATTGAAAA
86016842 GGGCTT-TGCCCCAGTT
1 GGGCTTATGCCCCAGTT
86016858 ATTAAAGAGG
Statistics
Matches: 136, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 34 0.25
26 102 0.75
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
GGGCTTATGCCCCAGTTTATTGAAAA
Found at i:86017078 original size:42 final size:42
Alignment explanation
Indices: 86017002--86017093 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
86016992 TAGTCTCCCC
* * ** *
86017002 AAATAGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
86017044 AAATGGGCTTGCATACATCCTTTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
86017086 AAATGGGC
1 AAATGGGC
86017094 ATAAGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:86017152 original size:31 final size:31
Alignment explanation
Indices: 86017117--86017231 Score: 162
Period size: 31 Copynumber: 3.7 Consensus size: 31
86017107 CATTTACAGT
* *
86017117 AAAGGCTTTGCCCCAATGATATGATTTATGA
1 AAAGGCTTTGGCCCAGTGATATGATTTATGA
* *
86017148 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTTGGCCCAGTGATATGATTTATGA
86017179 AAAGG-TTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTT-GGCCCAGTGATATGATTTATGA
*
86017210 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTTGGCCCAGTGATATG
86017232 TCAAGACTAA
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
30 7 0.09
31 66 0.88
32 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAGGCTTTGGCCCAGTGATATGATTTATGA
Found at i:86023321 original size:40 final size:39
Alignment explanation
Indices: 86023272--86023367 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 39
86023262 TAAGTCGGTA
86023272 TCGCACACTTAGTGCCTTATATAGCCGAAGCTATTCCAAC
1 TCGCACACTTAGTGCCTT-TATAGCCGAAGCTATTCCAAC
* * *
86023312 TCGCACACTTAGTGGCATTTGTAGCCGAAGCTATTCTAAC
1 TCGCACACTTAGT-GCCTTTATAGCCGAAGCTATTCCAAC
86023352 TCGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
86023368 ACGCATAGTC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
39 2 0.04
40 45 0.88
41 4 0.08
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (39 bp):
TCGCACACTTAGTGCCTTTATAGCCGAAGCTATTCCAAC
Found at i:86030426 original size:33 final size:33
Alignment explanation
Indices: 86030389--86030482 Score: 99
Period size: 33 Copynumber: 2.9 Consensus size: 33
86030379 AACACAGTGT
*
86030389 CAGTACAATCTGGGCCAAAGCCCTATTCAGTAA
1 CAGTACAATCTGGGCCTAAGCCCTATTCAGTAA
* *
86030422 CAGTACAGTCTGGGCCTTAGCCC--TT-A--AA
1 CAGTACAATCTGGGCCTAAGCCCTATTCAGTAA
*
86030450 CAGTAGCAATATGGGCCTAAGCCCTAATTCAGT
1 CAGTA-CAATCTGGGCCTAAGCCCT-ATTCAGT
86030483 CTCGACATAT
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
28 7 0.15
29 15 0.31
30 1 0.02
31 2 0.04
32 2 0.04
33 21 0.44
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (33 bp):
CAGTACAATCTGGGCCTAAGCCCTATTCAGTAA
Found at i:86031677 original size:27 final size:27
Alignment explanation
Indices: 86031615--86031692 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
86031605 GGGCATATTT
* *
86031615 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
*
86031642 GTCACTTTACCCTATAGGGGCT-TTACG
1 GTCATTTTACCCTATAGGGG-TATTACG
*
86031669 GTCTTTTTA-CCTATTAGGGGTATT
1 GTCATTTTACCCTA-TAGGGGTATT
86031693 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 5 0.12
27 37 0.86
28 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTACG
Found at i:86031763 original size:27 final size:27
Alignment explanation
Indices: 86031737--86031866 Score: 120
Period size: 27 Copynumber: 4.7 Consensus size: 27
86031727 ATCTACAAAC
*
86031737 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
86031764 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
*
86031793 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* * ** *
86031820 TAGGGGTATTTTGGTAATTTTGCAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
**
86031847 TGAGGGTATTTCAGTAATTT
1 CAAGGGTATTTCAGTAATTT
86031867 CACAAACTAG
Statistics
Matches: 84, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
26 1 0.01
27 57 0.68
28 7 0.08
29 18 0.21
30 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:86031872 original size:27 final size:26
Alignment explanation
Indices: 86031795--86031919 Score: 115
Period size: 27 Copynumber: 4.7 Consensus size: 26
86031785 TAGAAAGTCA
* **
86031795 AGGGTATTTCTGTAATTTTGTAAATT
1 AGGGTATTTCGGTAATTTTACAAATT
* *
86031821 AGGGGTATTTTGGTAATTTTGCAAATT
1 A-GGGTATTTCGGTAATTTTACAAATT
* * *
86031848 GAGGGTATTTCAGTAATTTCACAAACT
1 -AGGGTATTTCGGTAATTTTACAAATT
* *
86031875 AGTGGTATTTTGGTAATTTTACAAACT
1 AG-GGTATTTCGGTAATTTTACAAATT
*
86031902 AGGGGTATTTTGGTAATT
1 A-GGGTATTTCGGTAATT
86031920 CTACCCTATA
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
26 3 0.04
27 79 0.94
28 2 0.02
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.43
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAAATT
Found at i:86031908 original size:54 final size:54
Alignment explanation
Indices: 86031719--86031911 Score: 190
Period size: 54 Copynumber: 3.5 Consensus size: 54
86031709 ACAAGGGTGA
* * * * *
86031719 TTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTAT
1 TTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTGTAAACTAGTGGTAT
* * * * * *
86031773 TTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATTAGGGGTAT
1 TT-TGGTAA-TTTTACAAACT-AAGGGTATTTCAGTAATTTTGTAAACTAGTGGTAT
* * * ***
86031829 TTTGGTAATTTTGCAAATTGAGGGTATTTCAGTAATTTCACAAACTAGTGGTAT
1 TTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTGTAAACTAGTGGTAT
*
86031883 TTTGGTAATTTTACAAACTAGGGGTATTT
1 TTTGGTAATTTTACAAACTAAGGGTATTT
86031912 TGGTAATTCT
Statistics
Matches: 109, Mismatches: 26, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
54 58 0.53
55 16 0.15
56 35 0.32
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
TTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTGTAAACTAGTGGTAT
Found at i:86031935 original size:81 final size:80
Alignment explanation
Indices: 86031797--86031948 Score: 191
Period size: 81 Copynumber: 1.9 Consensus size: 80
86031787 GAAAGTCAAG
** * ** *
86031797 GGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTGCAAATTGAGGGTATTTCAGT
1 GGTATTTCTGTAATTTTACAAACTAGGGGTATTTTGGTAATTTACCAAATAGAGGGTATTT-AGT
86031862 AATTTCACAAACTAGT
65 AATTTCACAAACTAGT
**
86031878 GGTATTT-TGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACCCTATAG-GGGTATTTAG
1 GGTATTTCT-GTAATTTTACAAACTAGGGGTATTTTGGTAATT-TACCAAATAGAGGGTATTTAG
86031941 TAATTTCA
64 TAATTTCA
86031949 TAATCGAGGG
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
80 11 0.18
81 45 0.74
82 5 0.08
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.43
Consensus pattern (80 bp):
GGTATTTCTGTAATTTTACAAACTAGGGGTATTTTGGTAATTTACCAAATAGAGGGTATTTAGTA
ATTTCACAAACTAGT
Found at i:86031969 original size:26 final size:27
Alignment explanation
Indices: 86031940--86031990 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
86031930 GGGGTATTTA
86031940 GTAATTTCAT-AATCGAGGGTAAAATG
1 GTAATTTCATGAATCGAGGGTAAAATG
**
86031966 GTAATTTTGTGAATCGAGGGTAAAA
1 GTAATTTCATGAATCGAGGGTAAAA
86031991 CAGTAATTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.31
Consensus pattern (27 bp):
GTAATTTCATGAATCGAGGGTAAAATG
Found at i:86031984 original size:27 final size:27
Alignment explanation
Indices: 86031950--86032033 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
86031940 GTAATTTCAT
** * *
86031950 AATCGAGGGTAAAATGGTAATTTTGTG
1 AATCGAGGGTAAAACAGTAATTCTGTA
86031977 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
86032004 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
86032031 AAT
1 AAT
86032034 TAAGGGTACT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:86033407 original size:46 final size:46
Alignment explanation
Indices: 86033349--86033517 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 46
86033339 TGTAACCCAC
* *
86033349 CCATAAGCGAACTCGGACTTCATTCAATAAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTTCACTCAATGAGCTCGGGCGTTCGCAT
* * *
86033395 CCATAAGTGAACTCGGAC-TCAACTCAACGAGCTCGGATGCCTAGTTAG-AT
1 CCATAAGCGAACTCGGACTTC-ACTCAATGAGCTCGG--G-C--GTTCGCAT
* * *
86033445 -C-TCA-CGAACTCGGACTTAACTCAATGAGCTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTTCACTCAATGAGCTCGGGCGTTCGCAT
*
86033488 CCATAAGTGAACTCGGAC-TCAACTCAATGA
1 CCATAAGCGAACTCGGACTTC-ACTCAATGA
86033518 ATTCGGATGC
Statistics
Matches: 97, Mismatches: 14, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
42 4 0.04
43 2 0.02
44 2 0.02
45 5 0.05
46 48 0.49
47 24 0.25
48 4 0.04
49 2 0.02
50 2 0.02
51 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTTCACTCAATGAGCTCGGGCGTTCGCAT
Found at i:86033475 original size:93 final size:93
Alignment explanation
Indices: 86033356--86033528 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
86033346 CACCCATAAG
* * *
86033356 CGAACTCGGACTTCATTCAATAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTTAACTCAATAAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
86033421 ACGAGCTCGGATGCCTAGTTAGATCTCA
66 ACGAACTCGGATGCCTAGTTAGATCTCA
*
86033449 CGAACTCGGACTTAACTCAATGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTTAACTCAATAAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
86033514 ATGAATTCGGATGCC
66 ACGAACTCGGATGCC
86033529 CAAATATCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTTAACTCAATAAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAACTCGGATGCCTAGTTAGATCTCA
Found at i:86044530 original size:34 final size:34
Alignment explanation
Indices: 86044492--86044559 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
86044482 GCTTGCAAGG
86044492 TTAAACAACTGAGAAATAAAGATGTGGCTTTCGT
1 TTAAACAACTGAGAAATAAAGATGTGGCTTTCGT
86044526 TTAAACAACTGAGAAATAAAGATGTGGCTTTCGT
1 TTAAACAACTGAGAAATAAAGATGTGGCTTTCGT
86044560 AAAAGTCTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (34 bp):
TTAAACAACTGAGAAATAAAGATGTGGCTTTCGT
Found at i:86046049 original size:106 final size:106
Alignment explanation
Indices: 86045920--86046143 Score: 439
Period size: 106 Copynumber: 2.1 Consensus size: 106
86045910 TTGCAGAGAG
*
86045920 GGATTTAGCCCGGGTGGGTAATCCATTGATCTCAAATGTAAAAAGGATCTAGCTCGAATGGGTGT
1 GGATTTAGCCCGAGTGGGTAATCCATTGATCTCAAATGTAAAAAGGATCTAGCTCGAATGGGTGT
86045985 TCCTTGAGTGATTGAGCCTTCCGAAGATATGTGTGCATTGT
66 TCCTTGAGTGATTGAGCCTTCCGAAGATATGTGTGCATTGT
86046026 GGATTTAGCCCGAGTGGGTAATCCATTGATCTCAAATGTAAAAAGGATCTAGCTCGAATGGGTGT
1 GGATTTAGCCCGAGTGGGTAATCCATTGATCTCAAATGTAAAAAGGATCTAGCTCGAATGGGTGT
86046091 TCCTTGAGTGATTGAGCCTTCCGAAGATATGTGTGCATTGT
66 TCCTTGAGTGATTGAGCCTTCCGAAGATATGTGTGCATTGT
86046132 GGATTTAGCCCG
1 GGATTTAGCCCG
86046144 GACAGGTAAT
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 117 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (106 bp):
GGATTTAGCCCGAGTGGGTAATCCATTGATCTCAAATGTAAAAAGGATCTAGCTCGAATGGGTGT
TCCTTGAGTGATTGAGCCTTCCGAAGATATGTGTGCATTGT
Found at i:86048844 original size:27 final size:27
Alignment explanation
Indices: 86048579--86048842 Score: 352
Period size: 27 Copynumber: 9.8 Consensus size: 27
86048569 ATTCCTAAAG
*
86048579 TACCCTCGATTTACAGAATTA-TAGTTT
1 TACCCTCGATTTACAGAATTACCA-TTT
*
86048606 TACCCTCGATTTACAGAGTTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
86048633 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
86048660 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
86048687 TGCCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
86048714 TATCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
86048741 TA-CCTCGATTTATAGAATTACAATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
86048767 TACCCTCAATTTACAAAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
**
86048794 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
86048821 TACCCTCGATTTATAAAATTAC
1 TACCCTCGATTTACAGAATTAC
86048843 TGAAATACCC
Statistics
Matches: 211, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 23 0.11
27 187 0.89
28 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Done.