Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 284 of 770
Found at i:86440640 original size:23 final size:22
Alignment explanation
Indices: 86440587--86440641 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
86440577 AGTTTATATA
*
86440587 GTATGTTTGTATTTAAATTGTT
1 GTATGTTTGAATTTAAATTGTT
* *
86440609 ATATATTTGAATTATAAATT-TGT
1 GTATGTTTGAATT-TAAATTGT-T
86440632 GTATGTTTGA
1 GTATGTTTGA
86440642 CGGTAATTTG
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 11 0.42
23 15 0.58
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.55
Consensus pattern (22 bp):
GTATGTTTGAATTTAAATTGTT
Found at i:86441845 original size:2 final size:2
Alignment explanation
Indices: 86441838--86441863 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
86441828 GCTAATGTTC
86441838 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
86441864 GTTTGTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86447770 original size:29 final size:29
Alignment explanation
Indices: 86447737--86447924 Score: 254
Period size: 29 Copynumber: 6.6 Consensus size: 29
86447727 GTGACGAGAT
86447737 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
86447766 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
86447795 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
86447824 TGGCACTAAGTGTGCGTGCT-GAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
86447852 T-GCACTAAGTGTGCATACTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
86447880 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
86447909 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
86447925 GGCTTAAATT
Statistics
Matches: 141, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
27 16 0.11
28 16 0.11
29 109 0.77
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:86447886 original size:85 final size:86
Alignment explanation
Indices: 86447733--86447953 Score: 257
Period size: 85 Copynumber: 2.6 Consensus size: 86
86447723 TATGGTGACG
* * * *
86447733 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATG
1 AGATATGGCACTAAGTGTGCGTGCT-GAAATATATGGCACTAAGTGTGCATACTGGAAAAATACG
* *
86447797 GCACTAAGTGTGCGTGCTGGAA
65 GCACTAAGTGTGCGAGCTCGAA
*
86447819 ATATATGGCACTAAGTGTGCGTGCTGAAATATAT-GCACTAAGTGTGCATACTGGAAAAATACGG
1 AGATATGGCACTAAGTGTGCGTGCTGAAATATATGGCACTAAGTGTGCATACTGGAAAAATACGG
**
86447883 CACTGGGTGTGCGAGCTCGAA
66 CACTAAGTGTGCGAGCTCGAA
* * * * * * *
86447904 GGGTATGGCACTATGTGTGCGGGCTTAAATTTGCGTGGCACTAAGTGTGC
1 AGATATGGCACTAAGTGTGCGTGCTGAAATAT--ATGGCACTAAGTGTGC
86447954 GAAATCGAGT
Statistics
Matches: 114, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
85 68 0.60
86 12 0.11
87 21 0.18
88 13 0.11
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (86 bp):
AGATATGGCACTAAGTGTGCGTGCTGAAATATATGGCACTAAGTGTGCATACTGGAAAAATACGG
CACTAAGTGTGCGAGCTCGAA
Found at i:86458578 original size:40 final size:40
Alignment explanation
Indices: 86458451--86458580 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
86458441 ATGCTGGAAA
* *
86458451 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
86458491 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
86458531 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
86458571 TTATATCCGG
1 TTATATCCGG
86458581 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:86458579 original size:80 final size:78
Alignment explanation
Indices: 86458415--86458580 Score: 194
Period size: 80 Copynumber: 2.1 Consensus size: 78
86458405 AAATTGAATG
*
86458415 ATATCCGGGCTAAGCCCGAAGACATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATATCCGGGCTAAGCCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
86458480 TGTGCTAGTGGCT
66 TGTGCTAGTGGCT
* * * ** *
86458493 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-CCCGAAGACATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
86458557 -ATTCGTGC-ACGTGGTT
63 AATT-GTGCTA-GTGGCT
86458573 ATATCCGG
1 ATATCCGG
86458581 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 13 0.18
79 16 0.22
80 45 0.61
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCT
Found at i:86466612 original size:40 final size:40
Alignment explanation
Indices: 86466485--86466614 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
86466475 ATGCTGGAAA
* *
86466485 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
86466525 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
86466565 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
86466605 TTATATCCGG
1 TTATATCCGG
86466615 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:86481988 original size:46 final size:46
Alignment explanation
Indices: 86481936--86482145 Score: 285
Period size: 46 Copynumber: 4.7 Consensus size: 46
86481926 TTCCATAGTG
* * *
86481936 TCTTTCAACTATGGTCTTACTCATTTTC-TATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
*** *
86481982 TCTTTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
86482028 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
86482074 TCTTTCAACCATGGTCTT--ACA---C---TCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
86482112 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
86482146 AGAGCACACT
Statistics
Matches: 147, Mismatches: 8, Indels: 18
0.85 0.05 0.10
Matches are distributed among these distances:
38 34 0.23
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 4 0.03
46 101 0.69
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:86482109 original size:38 final size:38
Alignment explanation
Indices: 86482058--86482133 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
86482048 ACATTTCATA
86482058 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
86482096 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
86482134 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:86484299 original size:11 final size:11
Alignment explanation
Indices: 86484283--86484334 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
86484273 TATACTAAAT
86484283 AAATAATAATA
1 AAATAATAATA
*
86484294 AAATAAT-ATT
1 AAATAATAATA
* *
86484304 AAATATCTCATA
1 AAATA-ATAATA
*
86484316 AAATATTAATA
1 AAATAATAATA
86484327 AAATAATA
1 AAATAATA
86484335 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:86488596 original size:16 final size:16
Alignment explanation
Indices: 86488577--86488634 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
86488567 TAGTTTTCTC
86488577 TTTTGGTTTTGGGTCT
1 TTTTGGTTTTGGGTCT
* * **
86488593 TTTTGGTGATAGTTTTCTT
1 TTTTGGT-TTTG-GGTC-T
86488612 TTTTGGTTTTGGGTCT
1 TTTTGGTTTTGGGTCT
86488628 TTTTGGT
1 TTTTGGT
86488635 AGCCGACTTC
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
16 15 0.48
17 4 0.13
18 4 0.13
19 8 0.26
ACGTcount: A:0.03, C:0.05, G:0.28, T:0.64
Consensus pattern (16 bp):
TTTTGGTTTTGGGTCT
Found at i:86488604 original size:35 final size:35
Alignment explanation
Indices: 86488564--86488634 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
86488554 TCATTTCTTT
86488564 TGATAGTTTTCTCTTTTGGTTTTGGGTCTTTTTGG
1 TGATAGTTTTCTCTTTTGGTTTTGGGTCTTTTTGG
*
86488599 TGATAGTTTTCTTTTTTGGTTTTGGGTCTTTTTGG
1 TGATAGTTTTCTCTTTTGGTTTTGGGTCTTTTTGG
86488634 T
1 T
86488635 AGCCGACTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.06, C:0.07, G:0.25, T:0.62
Consensus pattern (35 bp):
TGATAGTTTTCTCTTTTGGTTTTGGGTCTTTTTGG
Found at i:86493223 original size:29 final size:29
Alignment explanation
Indices: 86493181--86493239 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
86493171 TTCCTCAATG
86493181 ATTGTCATACCGATGTCGCGACTACTACA
1 ATTGTCATACCGATGTCGCGACTACTACA
86493210 ATTGTCATACCGATGTCGCGACTACTACA
1 ATTGTCATACCGATGTCGCGACTACTACA
86493239 A
1 A
86493240 AAATATATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (29 bp):
ATTGTCATACCGATGTCGCGACTACTACA
Found at i:86494825 original size:37 final size:37
Alignment explanation
Indices: 86494775--86494849 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
86494765 ACCGTCAGAG
* *
86494775 TTAGAAAGGATTCATAATGTGTTTCATGTATCTATGT
1 TTAGAAAAGATTCATAATGTGTTTCATGCATCTATGT
86494812 TTAGAAAAGATTCATAATGTGTTTCATGCATCTATGT
1 TTAGAAAAGATTCATAATGTGTTTCATGCATCTATGT
86494849 T
1 T
86494850 ATGACGGTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (37 bp):
TTAGAAAAGATTCATAATGTGTTTCATGCATCTATGT
Found at i:86496241 original size:40 final size:40
Alignment explanation
Indices: 86496183--86496284 Score: 141
Period size: 40 Copynumber: 2.5 Consensus size: 40
86496173 CGAAGAGAAA
*
86496183 TCAGCTATTTATGGCACTTAGTGTGCAATTAGACATAGCT
1 TCAGCTATATATGGCACTTAGTGTGCAATTAGACATAGCT
* * * *
86496223 TCGGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
1 TCAGCTATATATGGCACTTAGTGTGCAATTAGACATAGCT
* *
86496263 TCAGCTATGTACGGCACTTAGT
1 TCAGCTATATATGGCACTTAGT
86496285 ATGTGAGATA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.34
Consensus pattern (40 bp):
TCAGCTATATATGGCACTTAGTGTGCAATTAGACATAGCT
Found at i:86496355 original size:28 final size:27
Alignment explanation
Indices: 86496275--86496356 Score: 103
Period size: 26 Copynumber: 3.0 Consensus size: 27
86496265 AGCTATGTAC
* * *
86496275 GGCACTTAGTATGTGAGATATCAAGTGT
1 GGCACTTAGTGTG-GAGATATCGAGTAT
86496303 GGCACTTAGTGT-GAGATATCGAGTAT
1 GGCACTTAGTGTGGAGATATCGAGTAT
*
86496329 GGCACTTAGTGTGCGAGATATTGAGTAT
1 GGCACTTAGTGTG-GAGATATCGAGTAT
86496357 TCAACAGCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 24 0.50
28 24 0.50
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (27 bp):
GGCACTTAGTGTGGAGATATCGAGTAT
Found at i:86499160 original size:47 final size:47
Alignment explanation
Indices: 86499090--86499265 Score: 158
Period size: 47 Copynumber: 3.6 Consensus size: 47
86499080 ACATTGGCAC
86499090 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * * ***
86499137 TAAGATAAGGATATCATGAAAGACCATGCCAAGG--CATGGCATTGATAAGTTTTG
1 TAAGACAAGGATACCATGTAAGACCATG-TTTGGAACATGGCATT--T--G----G
* * *
86499191 TAAGACAAGAATACCATGTAAGACCATGTTTGGAACATGGAATTTTG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
86499238 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
86499266 CCAAGGCATG
Statistics
Matches: 100, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
46 9 0.09
47 51 0.51
48 3 0.03
50 1 0.01
53 3 0.03
54 25 0.25
55 8 0.08
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:86499213 original size:101 final size:101
Alignment explanation
Indices: 86499090--86499320 Score: 367
Period size: 101 Copynumber: 2.3 Consensus size: 101
86499080 ACATTGGCAC
* *
86499090 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGAATACCATGTAAGACCATGTTTGGAACATGGAATTTGGTAAGATAAGGATATCATG
* *
86499155 AAAGACCATGCCAAGGCATGGCATTGATAAGTTTTG
66 AAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
*
86499191 TAAGACAAGAATACCATGTAAGACCATGTTTGGAACATGGAATTTTGTAAGATAAGGATATCATG
1 TAAGACAAGAATACCATGTAAGACCATGTTTGGAACATGGAATTTGGTAAGATAAGGATATCATG
*
86499256 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
66 AAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
*
86499292 TAAGGA-AAGGAA-ATCATGTAAGACCATGT
1 TAA-GACAA-GAATACCATGTAAGACCATGT
86499321 CAAGACATGG
Statistics
Matches: 121, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
101 116 0.96
102 5 0.04
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (101 bp):
TAAGACAAGAATACCATGTAAGACCATGTTTGGAACATGGAATTTGGTAAGATAAGGATATCATG
AAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
Found at i:86499373 original size:55 final size:55
Alignment explanation
Indices: 86499244--86499548 Score: 345
Period size: 55 Copynumber: 5.6 Consensus size: 55
86499234 TTTGTAAGAT
* * *
86499244 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGG-A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
* * * * *
86499298 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGACGAGTTACTATAAAGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGCA
* * * *
86499354 AAGG-TCCCATGTAAGACCATGCCAAGGCATCGCATTGGTGAGTTC-ATAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
* * * *
86499406 AAGGATGCCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTATTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGCA
* * *
86499462 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
** *
86499514 AAGGATACCACATAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
86499549 ATGGTAAGTT
Statistics
Matches: 211, Mismatches: 33, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
52 8 0.04
53 72 0.34
54 41 0.19
55 81 0.38
56 9 0.04
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
Found at i:86499442 original size:108 final size:108
Alignment explanation
Indices: 86499252--86499548 Score: 468
Period size: 108 Copynumber: 2.7 Consensus size: 108
86499242 ATAAGGATAT
* * * * *
86499252 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
*
86499317 ATGTCAAGACATGGCATTGACGAGTTACTATAAAGCAAAGGTCC
65 ATGTCAAGACATGGCATTGACGAGTTACTATAAAGAAAAGGTCC
* *
86499361 CATGTAAGACCATGCCAAGGCATCGCATTGGTGAGTTCATAAGGCAAGGATGCCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
* * *
86499426 TGTCAAGACATGGCATTGATGAGTTATTATAAGGAAAAGGTCC
66 TGTCAAGACATGGCATTGACGAGTTACTATAAAGAAAAGGTCC
**
86499469 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACATAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
86499534 TGTCAAGACATGGCA
66 TGTCAAGACATGGCA
86499549 ATGGTAAGTT
Statistics
Matches: 173, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
108 138 0.80
109 35 0.20
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGACGAGTTACTATAAAGAAAAGGTCC
Found at i:86520834 original size:45 final size:44
Alignment explanation
Indices: 86520686--86520849 Score: 163
Period size: 45 Copynumber: 3.6 Consensus size: 44
86520676 TCTGAACTCA
* ** *
86520686 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCG
1 TTGAGTTGAGTCCGAGTTCACTTAT-GAT-CGAACGCCCGAGCTCG
* *
86520732 TTGAGTTGAGTCCGAGTTC-GTGA-GAT-GTAACTAGGCATCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGATCG-AAC---GC--CCGAGCTCG
*
86520779 TTGAGTTGAGTCCGAGTTCACTTATGATACGAACGCCCGAGCTTG
1 TTGAGTTGAGTCCGAGTTCACTTATGAT-CGAACGCCCGAGCTCG
86520824 TTGAGTTGAGTCCGAGTTCACTTATG
1 TTGAGTTGAGTCCGAGTTCACTTATG
86520850 GGCGGGTTAC
Statistics
Matches: 99, Mismatches: 9, Indels: 21
0.77 0.07 0.16
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 3 0.03
45 37 0.37
46 19 0.19
47 28 0.28
48 2 0.02
49 3 0.03
50 3 0.03
51 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (44 bp):
TTGAGTTGAGTCCGAGTTCACTTATGATCGAACGCCCGAGCTCG
Found at i:86528066 original size:38 final size:39
Alignment explanation
Indices: 86528001--86528151 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
86527991 TATGGTAACC
* *
86528001 CGCACAA-AGCCTTCGGGACTTAACCCGGATATCACAA-T
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
86528039 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
86528078 CGCCCAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
86528117 CACACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
86528152 TCAAACATTC
Statistics
Matches: 104, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
38 24 0.23
39 80 0.77
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:86530722 original size:46 final size:45
Alignment explanation
Indices: 86530618--86530743 Score: 157
Period size: 46 Copynumber: 2.7 Consensus size: 45
86530608 AGATTTGTGT
*
86530618 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGCCATTGAGACGA-G
* *
86530666 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGA-GA-
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GCCAT-TGA-GACGAG
86530712 GCCAGTGTAAGACATGTCTGGGACATGCATCG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCG
86530744 ACACGGTTAC
Statistics
Matches: 71, Mismatches: 4, Indels: 9
0.85 0.05 0.11
Matches are distributed among these distances:
45 1 0.01
46 35 0.49
47 18 0.25
48 15 0.21
49 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGCCATTGAGACGAG
Found at i:86534315 original size:46 final size:46
Alignment explanation
Indices: 86534254--86534380 Score: 227
Period size: 46 Copynumber: 2.8 Consensus size: 46
86534244 AACTAGGCAT
* *
86534254 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGAATGCGAACGC
1 CCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGAATACGAACGC
86534300 CCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGAATACGAACGC
1 CCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGAATACGAACGC
*
86534346 CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATG
1 CCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATG
86534381 GGCGGGTTAC
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
CCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGAATACGAACGC
Found at i:86542285 original size:86 final size:87
Alignment explanation
Indices: 86542147--86542321 Score: 209
Period size: 85 Copynumber: 2.0 Consensus size: 87
86542137 TAGGATTCTG
* *
86542147 ATATGCATTATTGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGTGATTTACG-TGTAAGA
1 ATATGCATTATTGTGTAAGACCACATCTGGGACGTTGGCATCAATTTGTGA-TTA-GATGTAAGA
* *
86542211 CCATGTCTGGGACATTGGCATCGT
64 CCACGTCTAGGACATTGGCATCGT
86542235 ATATG-ATT-TTGTGTAAGACC-CTATCTGGGACAG-TGGCATCAATATT-TGATTAGATGTAAG
1 ATATGCATTATTGTGTAAGACCAC-ATCTGGGAC-GTTGGCATCAAT-TTGTGATTAGATGTAAG
* *
86542295 ACCACGTCTAGGACGTTGGCATTGT
63 ACCACGTCTAGGACATTGGCATCGT
86542320 AT
1 AT
86542322 GAGCTTACGG
Statistics
Matches: 77, Mismatches: 6, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
84 1 0.01
85 33 0.43
86 32 0.42
87 6 0.08
88 5 0.06
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (87 bp):
ATATGCATTATTGTGTAAGACCACATCTGGGACGTTGGCATCAATTTGTGATTAGATGTAAGACC
ACGTCTAGGACATTGGCATCGT
Found at i:86542315 original size:43 final size:42
Alignment explanation
Indices: 86542159--86542316 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 42
86542149 ATGCATTATT
86542159 GTGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGTGATTTA
1 GTGTAAGACCACGTCTGGGACGTTGGCATC-ATATT-TGATTTA
* * * * *
86542202 CGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATTTT
1 -GTGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTTA
*
86542245 GTGTAAGACC-CTATCTGGGACAG-TGGCATCAATATTTGA-TTA
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCATC-ATATTTGATTTA
*
86542287 GATGTAAGACCACGTCTAGGACGTTGGCAT
1 G-TGTAAGACCACGTCTGGGACGTTGGCAT
86542317 TGTATGAGCT
Statistics
Matches: 94, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
42 29 0.31
43 35 0.37
44 30 0.32
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTTA
Found at i:86544729 original size:40 final size:39
Alignment explanation
Indices: 86544684--86544813 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
86544674 CGGAATACAA
86544684 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
86544724 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
86544764 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
86544804 CCGGATATAA
1 CCGGATATAA
86544814 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:86549947 original size:17 final size:17
Alignment explanation
Indices: 86549924--86549961 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
86549914 CATGTAATGC
*
86549924 CCCAAAACTCCCGAAA-
1 CCCAAAAATCCCGAAAT
*
86549940 CCCAAAAATCCTGAAAT
1 CCCAAAAATCCCGAAAT
86549957 CCCAA
1 CCCAA
86549962 GCTTTCTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.45, C:0.39, G:0.05, T:0.11
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:86551335 original size:28 final size:28
Alignment explanation
Indices: 86551289--86551402 Score: 129
Period size: 28 Copynumber: 4.0 Consensus size: 28
86551279 GTGAGCATGA
* * * *
86551289 ATATGAATGTGACTAGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
86551317 ATATAAATGTGATTGGGCCTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
* *
86551345 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
86551374 ATATGAATATGAATGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
86551402 A
1 A
86551403 GATACAAGTA
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 49 0.67
29 24 0.33
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:86554086 original size:16 final size:17
Alignment explanation
Indices: 86554065--86554103 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
86554055 GTTGTAATGC
86554065 CCCAAAAATCCCGAAA-
1 CCCAAAAATCCCGAAAT
*
86554081 CCCAAAAATCTCGAAAT
1 CCCAAAAATCCCGAAAT
86554098 CCCAAA
1 CCCAAA
86554104 CTTTCTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.49, C:0.36, G:0.05, T:0.10
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:86555461 original size:29 final size:29
Alignment explanation
Indices: 86555419--86555518 Score: 121
Period size: 29 Copynumber: 3.5 Consensus size: 29
86555409 TGTATGTGAC
*
86555419 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
86555448 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* * * *
86555477 TGGGCCTAATGGGCTATATTAATTTGA-A
1 TGGGCCTAATGGGCCATATAAATGTGATT
*
86555505 TGGGCTTAATGGGC
1 TGGGCCTAATGGGC
86555519 TAGATACAGG
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 13 0.21
29 48 0.79
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:86556425 original size:18 final size:18
Alignment explanation
Indices: 86556379--86556431 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
86556369 TGTAATAAGG
86556379 TTTTCATTATGTTATTATTA
1 TTTTCATTA--TTATTATTA
* **
86556399 CTTGAATTATTATTATTA
1 TTTTCATTATTATTATTA
*
86556417 TTTTCATTATAATTA
1 TTTTCATTATTATTA
86556432 CGAGAAGTTG
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
18 20 0.77
20 6 0.23
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (18 bp):
TTTTCATTATTATTATTA
Found at i:86558184 original size:28 final size:28
Alignment explanation
Indices: 86558152--86558250 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
86558142 GCAATAAGCC
*
86558152 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
86558180 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
86558208 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
86558237 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86558251 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:86560465 original size:64 final size:64
Alignment explanation
Indices: 86560364--86560492 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
86560354 ATAACATGAA
86560364 AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTT
1 AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTT
86560428 AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTT
1 AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTT
86560492 A
1 A
86560493 CTTACTTTCC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (64 bp):
AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTT
Found at i:86561748 original size:28 final size:28
Alignment explanation
Indices: 86561716--86561814 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
86561706 GCAATAAGCC
*
86561716 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
86561744 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
86561772 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
86561801 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86561815 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:86569410 original size:28 final size:28
Alignment explanation
Indices: 86569378--86569476 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
86569368 GCAATAAGCC
*
86569378 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
86569406 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
86569434 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
86569463 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86569477 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:86571687 original size:64 final size:64
Alignment explanation
Indices: 86571586--86571714 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
86571576 ATAACATGAA
86571586 AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTT
1 AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTT
86571650 AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTT
1 AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTT
86571714 A
1 A
86571715 CTTACTTTCC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (64 bp):
AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTT
Found at i:86577453 original size:26 final size:28
Alignment explanation
Indices: 86577424--86577491 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
86577414 TAGTGAGTCC
86577424 GCACACTTAGTGCT-TATAATC-AACTA
1 GCACACTTAGTGCTATATAATCAAACTA
* *
86577450 GCACACTTAGTGCTATATGATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTA
86577478 GCACACTTAGTGCT
1 GCACACTTAGTGCT
86577492 GTACAAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 14 0.37
27 6 0.16
28 18 0.47
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTA
Found at i:86582716 original size:14 final size:14
Alignment explanation
Indices: 86582697--86582724 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
86582687 TATATTAGTA
86582697 TTTTCTATTCTATT
1 TTTTCTATTCTATT
86582711 TTTTCTATTCTATT
1 TTTTCTATTCTATT
86582725 AGTATTAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTCTATTCTATT
Found at i:86582732 original size:6 final size:6
Alignment explanation
Indices: 86582721--86582799 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
86582711 TTTTCTATTC
* *
86582721 TATTAG TATTAGAG TATTAG -ATTAG TATT-C TATT-C TATTAG TATTAG
1 TATTAG TATT--AG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
86582768 -ATTAG TATTAG --TTAG -ATTAG -ATTAG TATTAG T
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG T
86582800 TAGTGATCCC
Statistics
Matches: 64, Mismatches: 2, Indels: 14
0.80 0.03 0.17
Matches are distributed among these distances:
4 4 0.06
5 28 0.44
6 26 0.41
8 6 0.09
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48
Consensus pattern (6 bp):
TATTAG
Found at i:86582747 original size:11 final size:11
Alignment explanation
Indices: 86582722--86582803 Score: 50
Period size: 11 Copynumber: 7.5 Consensus size: 11
86582712 TTTCTATTCT
86582722 ATTAGTATTAG
1 ATTAGTATTAG
86582733 ---AGTATTAG
1 ATTAGTATTAG
**
86582741 ATTAGTATTCT
1 ATTAGTATTAG
*
86582752 ATT-CTATTAG
1 ATTAGTATTAG
86582762 TATTAG-ATTAG
1 -ATTAGTATTAG
86582773 TATTAGTTAGATTAG
1 -ATTAG-T--ATTAG
86582788 ATTAGTATTAG
1 ATTAGTATTAG
86582799 -TTAGT
1 ATTAGT
86582804 GATCCCGGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 19
0.69 0.07 0.23
Matches are distributed among these distances:
8 8 0.14
10 9 0.16
11 28 0.50
13 1 0.02
14 5 0.09
15 5 0.09
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:86582788 original size:20 final size:21
Alignment explanation
Indices: 86582758--86582803 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
86582748 TTCTATTCTA
86582758 TTAGTATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
86582779 TTAG-ATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
86582799 TTAGT
1 TTAGT
86582804 GATCCCGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48
Consensus pattern (21 bp):
TTAGTATTAGATTAGTATTAG
Found at i:86591016 original size:32 final size:32
Alignment explanation
Indices: 86590975--86591036 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
86590965 CATCTATTTT
86590975 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
86591007 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
86591037 ACCAAAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:86598348 original size:13 final size:13
Alignment explanation
Indices: 86598330--86598357 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
86598320 TGAAAATTCG
86598330 TTAATGGTACATT
1 TTAATGGTACATT
86598343 TTAATGGTACATT
1 TTAATGGTACATT
86598356 TT
1 TT
86598358 CCCCTATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (13 bp):
TTAATGGTACATT
Found at i:86608287 original size:21 final size:21
Alignment explanation
Indices: 86608263--86608306 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
86608253 GAATCTTTAG
*
86608263 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
86608284 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
86608305 TA
1 TA
86608307 ATTAGGTCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:86610565 original size:22 final size:22
Alignment explanation
Indices: 86610538--86610581 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
86610528 CTCTCGATTT
86610538 TTTTATTGCTCCTTTTCAATCA
1 TTTTATTGCTCCTTTTCAATCA
86610560 TTTTATTGCTCCTTTTCAATCA
1 TTTTATTGCTCCTTTTCAATCA
86610582 AAAGAGATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.23, G:0.05, T:0.55
Consensus pattern (22 bp):
TTTTATTGCTCCTTTTCAATCA
Found at i:86614736 original size:32 final size:32
Alignment explanation
Indices: 86614700--86614761 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
86614690 AGCTTTTGGT
86614700 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
*
86614732 TTTTTCGTGTTGTCAAAGAGTTGAACAATG
1 TTTTTCATGTTGTCAAAGAGTTGAACAATG
86614762 AAAATAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Found at i:86622948 original size:6 final size:6
Alignment explanation
Indices: 86622937--86623015 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
86622927 GGGATCACTA
86622937 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -CTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
* *
86622980 A-GAAT A-GAAT ACTAAT -CTAAT ACTCTAAT ACTAAT A
1 ACTAAT ACTAAT ACTAAT ACTAAT A--CTAAT ACTAAT A
86623016 GAATAGAAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
4 3 0.05
5 27 0.43
6 27 0.43
8 6 0.10
ACGTcount: A:0.48, C:0.16, G:0.03, T:0.33
Consensus pattern (6 bp):
ACTAAT
Found at i:86622959 original size:20 final size:21
Alignment explanation
Indices: 86622933--86622978 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
86622923 AGCCGGGATC
86622933 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
86622954 -CTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
86622974 ACTAA
1 ACTAA
86622979 TAGAATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.33
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:86623003 original size:11 final size:11
Alignment explanation
Indices: 86622933--86622979 Score: 73
Period size: 11 Copynumber: 4.5 Consensus size: 11
86622923 AGCCGGGATC
86622933 ACTAA-CTAAT
1 ACTAATCTAAT
86622943 ACTAATCTAAT
1 ACTAATCTAAT
86622954 -CTAA-CTAAT
1 ACTAATCTAAT
86622963 ACTAATCTAAT
1 ACTAATCTAAT
86622974 ACTAAT
1 ACTAAT
86622980 AGAATAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.15
10 13 0.38
11 16 0.47
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:86623029 original size:14 final size:14
Alignment explanation
Indices: 86623012--86623039 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
86623002 CTCTAATACT
86623012 AATAGAATAGAAAA
1 AATAGAATAGAAAA
86623026 AATAGAATAGAAAA
1 AATAGAATAGAAAA
86623040 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:86631365 original size:18 final size:18
Alignment explanation
Indices: 86631286--86631379 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
86631276 CAAGGTCACG
*
86631286 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTATC
* *
86631304 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
*
86631322 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTATC
86631340 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
86631358 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
86631373 ATCAATA
1 ATCAATA
86631380 AGAAAACCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:86631366 original size:9 final size:9
Alignment explanation
Indices: 86631286--86631366 Score: 54
Period size: 9 Copynumber: 9.0 Consensus size: 9
86631276 CAAGGTCACG
*
86631286 ATCAATAGC
1 ATCAATATC
* *
86631295 GTCACTATC
1 ATCAATATC
*
86631304 ATCAATAGC
1 ATCAATATC
* * *
86631313 GTCACTAGC
1 ATCAATATC
86631322 ATCAATATC
1 ATCAATATC
* * *
86631331 GTCACTAGC
1 ATCAATATC
86631340 ATCAATATC
1 ATCAATATC
* *
86631349 GTCACTATC
1 ATCAATATC
86631358 ATCAATATC
1 ATCAATATC
86631367 GATATCATCA
Statistics
Matches: 51, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (9 bp):
ATCAATATC
Found at i:86633775 original size:21 final size:21
Alignment explanation
Indices: 86633745--86633833 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
86633735 CTCACAAAGA
* *
86633745 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
86633765 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
86633786 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
86633807 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
86633831 AAA
1 AAA
86633834 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:86633826 original size:24 final size:21
Alignment explanation
Indices: 86633745--86633813 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
86633735 CTCACAAAGA
* * *
86633745 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
86633765 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
86633786 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
86633807 AAAAAGA
1 AAAAAGA
86633814 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:86637999 original size:14 final size:14
Alignment explanation
Indices: 86637980--86638008 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86637970 TACAATATAT
86637980 ATAAGAATTATACG
1 ATAAGAATTATACG
86637994 ATAAGAATTATACG
1 ATAAGAATTATACG
86638008 A
1 A
86638009 ATCCATCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATAAGAATTATACG
Found at i:86643720 original size:16 final size:16
Alignment explanation
Indices: 86643695--86643727 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
86643685 ACGGTATTCT
*
86643695 ATATTTTATAGTAGCA
1 ATATTCTATAGTAGCA
86643711 ATATTCTATAGTAGCA
1 ATATTCTATAGTAGCA
86643727 A
1 A
86643728 AGGAATAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (16 bp):
ATATTCTATAGTAGCA
Found at i:86644226 original size:15 final size:15
Alignment explanation
Indices: 86644193--86644226 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
86644183 AGTTATGTCT
*
86644193 ATGTATGGAATTATA
1 ATGTATGGAATTAGA
*
86644208 ATGTATGGAATTAGC
1 ATGTATGGAATTAGA
86644223 ATGT
1 ATGT
86644227 CAAAAAGATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (15 bp):
ATGTATGGAATTAGA
Found at i:86645249 original size:19 final size:19
Alignment explanation
Indices: 86645227--86645266 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
86645217 TTAAACTTTT
* *
86645227 ATTATACTTTTCTATTCTA
1 ATTAAACTTTTCGATTCTA
86645246 ATTAAACTTTTCGATTCTA
1 ATTAAACTTTTCGATTCTA
86645265 AT
1 AT
86645267 AAAAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.53
Consensus pattern (19 bp):
ATTAAACTTTTCGATTCTA
Found at i:86646972 original size:14 final size:14
Alignment explanation
Indices: 86646953--86646981 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86646943 CTTTTTACTT
86646953 TGTTATATAGATTA
1 TGTTATATAGATTA
86646967 TGTTATATAGATTA
1 TGTTATATAGATTA
86646981 T
1 T
86646982 TATTTATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (14 bp):
TGTTATATAGATTA
Found at i:86647130 original size:21 final size:21
Alignment explanation
Indices: 86647106--86647145 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
86647096 TTTATCAGTA
*
86647106 ATTCCATTTCATTTATATTAT
1 ATTCCATATCATTTATATTAT
*
86647127 ATTCTATATCATTTATATT
1 ATTCCATATCATTTATATT
86647146 TTTAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTCCATATCATTTATATTAT
Found at i:86647745 original size:11 final size:11
Alignment explanation
Indices: 86647729--86647753 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
86647719 CTTTATATTT
86647729 ATATACAATAA
1 ATATACAATAA
86647740 ATATACAATAA
1 ATATACAATAA
86647751 ATA
1 ATA
86647754 CAATAATCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
ATATACAATAA
Found at i:86648448 original size:14 final size:15
Alignment explanation
Indices: 86648417--86648456 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
86648407 TATCTTTATC
86648417 TTATTTATATTCTATT
1 TTATTTAT-TTCTATT
86648433 TTATTTATTTCT-TT
1 TTATTTATTTCTATT
*
86648447 TTTTTTATTT
1 TTATTTATTT
86648457 ATCCATCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.48
15 4 0.17
16 8 0.35
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (15 bp):
TTATTTATTTCTATT
Found at i:86653141 original size:23 final size:23
Alignment explanation
Indices: 86653111--86653156 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
86653101 TATATTTTGA
86653111 GTTCGTATATAACTAGTCAATAT
1 GTTCGTATATAACTAGTCAATAT
86653134 GTTCGTATATAACTAGTCAATAT
1 GTTCGTATATAACTAGTCAATAT
86653157 CTAATATCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (23 bp):
GTTCGTATATAACTAGTCAATAT
Found at i:86653717 original size:14 final size:14
Alignment explanation
Indices: 86653698--86653725 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
86653688 TCAAGATAAA
86653698 GATAATATTGATCG
1 GATAATATTGATCG
86653712 GATAATATTGATCG
1 GATAATATTGATCG
86653726 AAGGTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
GATAATATTGATCG
Found at i:86654926 original size:29 final size:29
Alignment explanation
Indices: 86654884--86654941 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
86654874 TATTAACCGA
86654884 TTCCATAGATCTATGTAGTTCCAAAAAAG
1 TTCCATAGATCTATGTAGTTCCAAAAAAG
86654913 TTCCATAGATCTATGTAGTTCCAAAAAAG
1 TTCCATAGATCTATGTAGTTCCAAAAAAG
86654942 AATTTATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (29 bp):
TTCCATAGATCTATGTAGTTCCAAAAAAG
Found at i:86671013 original size:15 final size:15
Alignment explanation
Indices: 86670993--86671035 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
86670983 TATTAGAAAT
86670993 AAATAGATATTATAA
1 AAATAGATATTATAA
86671008 AAATAGA-A--AT--
1 AAATAGATATTATAA
86671018 AAATAGATATTATAA
1 AAATAGATATTATAA
86671033 AAA
1 AAA
86671036 GAAACTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 7 0.30
11 1 0.04
12 2 0.09
13 2 0.09
14 1 0.04
15 10 0.43
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (15 bp):
AAATAGATATTATAA
Found at i:86671014 original size:25 final size:25
Alignment explanation
Indices: 86670986--86671035 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
86670976 AAATATTTAT
86670986 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
86671011 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
86671036 GAAACTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (25 bp):
TAGAAATAAATAGATATTATAAAAA
Found at i:86676727 original size:31 final size:33
Alignment explanation
Indices: 86676664--86676737 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
86676654 AAAATGAAAA
* *
86676664 TAAATTAATAATTTATTTTAATTATACTTAAAT
1 TAAATTATTAATTTATTCTAATTATACTTAAAT
*
86676697 TAAATTATTAATTT-TTCTATTTA-ACTTAAAT
1 TAAATTATTAATTTATTCTAATTATACTTAAAT
86676728 TAAA-TATTAA
1 TAAATTATTAA
86676738 ATAATAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 6 0.16
31 12 0.32
32 7 0.18
33 13 0.34
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (33 bp):
TAAATTATTAATTTATTCTAATTATACTTAAAT
Found at i:86676743 original size:10 final size:10
Alignment explanation
Indices: 86676730--86676949 Score: 97
Period size: 11 Copynumber: 21.4 Consensus size: 10
86676720 ACTTAAATTA
*
86676730 AATATTAAAT
1 AATAATAAAT
86676740 AATAATAAAT
1 AATAATAAAT
** *
86676750 TCTAAATATACT
1 AAT-AATA-AAT
86676762 AA-ATATAAAT
1 AATA-ATAAAT
86676772 AATAACTAAAT
1 AATAA-TAAAT
86676783 AATAACTAAAT
1 AATAA-TAAAT
86676794 AGA-AAT--A-
1 A-ATAATAAAT
86676801 AA-AATAAAT
1 AATAATAAAT
86676810 AATAACTAAAT
1 AATAA-TAAAT
86676821 AGA-AATAAAAT
1 A-ATAAT-AAAT
86676832 AATAACTAAAT
1 AATAA-TAAAT
86676843 AGA-AATAAA-
1 A-ATAATAAAT
*
86676852 AAT-ATATAT
1 AATAATAAAT
* *
86676861 AAAAATATAT
1 AATAATAAAT
86676871 -ATAAT-AAT
1 AATAATAAAT
86676879 AATATATAAA-
1 AATA-ATAAAT
*
86676889 AATAATATAT
1 AATAATAAAT
*
86676899 AAATTATAAAT
1 -AATAATAAAT
86676910 AGATAATATAAT
1 A-ATAATA-AAT
86676922 AATAGATAGAAT
1 AATA-ATA-AAT
86676934 AATAAAATAAAT
1 AAT--AATAAAT
86676946 AATA
1 AATA
86676950 TAGAAATATA
Statistics
Matches: 165, Mismatches: 16, Indels: 58
0.69 0.07 0.24
Matches are distributed among these distances:
6 4 0.02
7 1 0.01
8 9 0.05
9 16 0.10
10 39 0.24
11 67 0.41
12 25 0.15
13 3 0.02
14 1 0.01
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (10 bp):
AATAATAAAT
Found at i:86676863 original size:22 final size:24
Alignment explanation
Indices: 86676779--86676859 Score: 114
Period size: 22 Copynumber: 3.4 Consensus size: 24
86676769 AATAATAACT
86676779 AAATA-ATAACTAAATAGAAATAA
1 AAATATATAACTAAATAGAAATAA
86676802 AAATAAATAATAACTAAATAGAAAT-A
1 AAAT--AT-ATAACTAAATAGAAATAA
86676828 AAATA-ATAACTAAATAGAAATAA
1 AAATATATAACTAAATAGAAATAA
86676851 AAATATATA
1 AAATATATA
86676860 TAAAAATATA
Statistics
Matches: 52, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
22 16 0.31
23 10 0.19
24 4 0.08
25 1 0.02
26 5 0.10
27 16 0.31
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (24 bp):
AAATATATAACTAAATAGAAATAA
Found at i:86676868 original size:12 final size:13
Alignment explanation
Indices: 86676847--86676901 Score: 87
Period size: 13 Copynumber: 4.4 Consensus size: 13
86676837 CTAAATAGAA
86676847 ATAAAAAT-ATAT
1 ATAAAAATAATAT
86676859 ATAAAAAT-ATAT
1 ATAAAAATAATAT
*
86676871 ATAATAATAATAT
1 ATAAAAATAATAT
86676884 ATAAAAATAATAT
1 ATAAAAATAATAT
86676897 ATAAA
1 ATAAA
86676902 TTATAAATAG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
12 19 0.47
13 21 0.52
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
ATAAAAATAATAT
Found at i:86676882 original size:15 final size:15
Alignment explanation
Indices: 86676853--86676949 Score: 78
Period size: 15 Copynumber: 6.7 Consensus size: 15
86676843 AGAAATAAAA
*
86676853 ATATAT-ATAAAAAT
1 ATATATAATAATAAT
86676867 ATATATAATAATAAT
1 ATATATAATAATAAT
86676882 ATATA-AA-AATAAT
1 ATATATAATAATAAT
*
86676895 ATATA-AATTATAA-
1 ATATATAATAATAAT
*
86676908 ATAGATAATATAATAAT
1 ATATAT-A-ATAATAAT
* * *
86676925 AGATAGAATAATAAA
1 ATATATAATAATAAT
*
86676940 ATAAATAATA
1 ATATATAATA
86676950 TAGAAATATA
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
13 17 0.26
14 12 0.18
15 27 0.41
16 7 0.11
17 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
ATATATAATAATAAT
Found at i:86676892 original size:43 final size:42
Alignment explanation
Indices: 86676796--86676959 Score: 118
Period size: 43 Copynumber: 3.7 Consensus size: 42
86676786 AACTAAATAG
* * * * *
86676796 AAATAAAAATAAATAATAA-CTAAATAGAAATAAAATAATAACT
1 AAATAAAAATAAA-AATAATATAAAAATATATATAATAATAA-T
*
86676839 AAATAGAAATAAAAATATATATAAAAATATATATAATAATAAT
1 AAATAAAAATAAAAATA-ATATAAAAATATATATAATAATAAT
* *
86676882 ATATAAAAATAATATATAAATTATAAATAGATA-ATATAATAATAGAT
1 AAATAAAAATAA-AAAT-AA-TATAAA-A-ATATATATAATAATA-AT
* *
86676929 AGAATAATAAA-ATAAATAATATAGAAATATA
1 A-AATAA-AAATAAAAATAATATAAAAATATA
86676960 GATTTATAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 21
0.74 0.10 0.16
Matches are distributed among these distances:
42 4 0.04
43 27 0.28
44 23 0.24
45 12 0.12
46 14 0.14
47 9 0.09
48 5 0.05
49 3 0.03
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (42 bp):
AAATAAAAATAAAAATAATATAAAAATATATATAATAATAAT
Found at i:86676892 original size:49 final size:50
Alignment explanation
Indices: 86676755--86676951 Score: 139
Period size: 49 Copynumber: 4.0 Consensus size: 50
86676745 TAAATTCTAA
* *
86676755 ATATACTAAATATAAATAATAACTAA-ATAATAACTAAATAGAAATAAAAATA-
1 ATATAATAAATATATATAATAA-TAATAT-ATAAC-AAATA-AAATAAAAATAT
* * *
86676807 A-ATAATAACTAAATAGAAATAA-AATA-ATAACTAAATAGAAATAAAAATAT
1 ATATAATAAATATATA-TAATAATAATATATAAC-AAATA-AAATAAAAATAT
* *
86676857 ATATAA-AAATATATATAATAATAATATATAA-AAATAATATATAAAT-T
1 ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAAAATAT
* * * *
86676904 ATA-AATAGATA-ATATAATAAT-AGATAGAA-TAATAAAATAAATAATAT
1 ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAA-AATAT
86676951 A
1 A
86676952 GAAATATAGA
Statistics
Matches: 120, Mismatches: 16, Indels: 23
0.75 0.10 0.14
Matches are distributed among these distances:
45 15 0.12
46 15 0.12
47 10 0.08
48 8 0.07
49 33 0.28
50 14 0.12
51 19 0.16
52 6 0.05
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (50 bp):
ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAAAATAT
Found at i:86676920 original size:20 final size:20
Alignment explanation
Indices: 86676895--86676998 Score: 62
Period size: 20 Copynumber: 5.4 Consensus size: 20
86676885 TAAAAATAAT
86676895 ATATAAATTATAAATAGATA
1 ATATAAATTATAAATAGATA
* *
86676915 ATAT-AATAATAGATAGAATA
1 ATATAAATTATAAATAG-ATA
*
86676935 ATA-AAATAAATAATATAGA-A
1 ATATAAAT-TATAA-ATAGATA
* *
86676955 ATATAGATTTATAAATCGA-A
1 ATATA-AATTATAAATAGATA
*
86676975 ATAT--ATTA-ATATA-ATA
1 ATATAAATTATAAATAGATA
86676991 ATATAAAT
1 ATATAAAT
86676999 ATTATTAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 20
0.69 0.09 0.21
Matches are distributed among these distances:
15 1 0.02
16 8 0.12
17 3 0.05
18 2 0.03
19 10 0.15
20 26 0.39
21 10 0.15
22 6 0.09
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.34
Consensus pattern (20 bp):
ATATAAATTATAAATAGATA
Found at i:86676956 original size:15 final size:14
Alignment explanation
Indices: 86676797--86676957 Score: 55
Period size: 13 Copynumber: 11.8 Consensus size: 14
86676787 ACTAAATAGA
86676797 AATA-AAAATAAAT
1 AATATAAAATAAAT
*
86676810 AATAACTAAATAGAAAT
1 AAT-A-TAAA-ATAAAT
* *
86676827 AA-A-ATAATAACT
1 AATATAAAATAAAT
86676839 AA-ATAGAAATAAA-
1 AATATA-AAATAAAT
86676852 AATATATATAA-AAAT
1 AATATA-A-AATAAAT
*
86676867 -ATATATAAT-AAT
1 AATATAAAATAAAT
*
86676879 AATATATAA-AAAT
1 AATATAAAATAAAT
86676892 AATAT---ATAAAT
1 AATATAAAATAAAT
*
86676903 --TAT-AAATAGAT
1 AATATAAAATAAAT
*
86676914 AATATAATAATAGATAG
1 AATATAA-AATA-A-AT
86676931 AATAATAAAATAAAT
1 AAT-ATAAAATAAAT
86676946 AATATAGAAATA
1 AATATA-AAATA
86676958 TAGATTTATA
Statistics
Matches: 113, Mismatches: 12, Indels: 44
0.67 0.07 0.26
Matches are distributed among these distances:
9 3 0.03
10 1 0.01
11 9 0.08
12 12 0.11
13 27 0.24
14 22 0.19
15 16 0.14
16 4 0.04
17 15 0.13
18 4 0.04
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (14 bp):
AATATAAAATAAAT
Found at i:86677004 original size:23 final size:23
Alignment explanation
Indices: 86676973--86677056 Score: 64
Period size: 26 Copynumber: 3.6 Consensus size: 23
86676963 TTATAAATCG
86676973 AAATA-TATTAATATAATAATAT
1 AAATATTATTAATATAATAATAT
* *
86676995 AAATATTATTAATTACTTAATATTCT
1 AAATATTATTAA-TA--TAATAATAT
* * *
86677021 TAATATTAATAACA-AATAATAT
1 AAATATTATTAATATAATAATAT
*
86677043 AAATTAATATTAAT
1 AAA-TATTATTAAT
86677057 TGCTAATAAC
Statistics
Matches: 46, Mismatches: 11, Indels: 9
0.70 0.17 0.14
Matches are distributed among these distances:
22 13 0.28
23 13 0.28
24 2 0.04
25 1 0.02
26 17 0.37
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
AAATATTATTAATATAATAATAT
Found at i:86677064 original size:26 final size:26
Alignment explanation
Indices: 86676977--86677065 Score: 82
Period size: 23 Copynumber: 3.7 Consensus size: 26
86676967 AAATCGAAAT
86676977 ATATTAA-TA-TAATAATATAAA-TA
1 ATATTAATTACTAATAATATAAATTA
* **
86677000 TTATTAATTACT--TAATAT-TCTTA
1 ATATTAATTACTAATAATATAAATTA
* *
86677023 ATATTAATAACAAATAATATAAATTA
1 ATATTAATTACTAATAATATAAATTA
*
86677049 ATATTAATTGCTAATAA
1 ATATTAATTACTAATAA
86677066 CTTGTAATTT
Statistics
Matches: 49, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
23 23 0.47
24 2 0.04
25 7 0.14
26 17 0.35
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (26 bp):
ATATTAATTACTAATAATATAAATTA
Found at i:86682723 original size:15 final size:15
Alignment explanation
Indices: 86682705--86682735 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
86682695 ATCTCTCATC
86682705 TATCTATCTATTTTT
1 TATCTATCTATTTTT
86682720 TATCTATCTATTTTT
1 TATCTATCTATTTTT
86682735 T
1 T
86682736 CTTTAGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (15 bp):
TATCTATCTATTTTT
Found at i:86683437 original size:16 final size:17
Alignment explanation
Indices: 86683410--86683443 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
86683400 AAATGGATTT
86683410 AATAGAAATTAAATAGA
1 AATAGAAATTAAATAGA
86683427 AATAG-AATTAAATAGA
1 AATAGAAATTAAATAGA
86683443 A
1 A
86683444 TTCTCTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.24
Consensus pattern (17 bp):
AATAGAAATTAAATAGA
Found at i:86684373 original size:15 final size:15
Alignment explanation
Indices: 86684344--86684405 Score: 54
Period size: 16 Copynumber: 4.0 Consensus size: 15
86684334 GTAGAAAGCC
* *
86684344 TATTTTTTTTTCTAG
1 TATTTTATTTACTAG
86684359 TATTTTATTTACTAG
1 TATTTTATTTACTAG
**
86684374 CGTGTTTATTTACTAGCG
1 TAT-TTTATTTACTA--G
86684392 TA-TTTATTTACTAG
1 TATTTTATTTACTAG
86684406 CGTATTTGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
14 1 0.03
15 14 0.37
16 22 0.58
18 1 0.03
ACGTcount: A:0.21, C:0.10, G:0.11, T:0.58
Consensus pattern (15 bp):
TATTTTATTTACTAG
Found at i:86684383 original size:16 final size:16
Alignment explanation
Indices: 86684362--86684412 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
86684352 TTTCTAGTAT
*
86684362 TTTATTTACTAGCGTG
1 TTTATTTACTAGCGTA
86684378 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
86684394 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
86684410 TTT
1 TTT
86684413 GCTCTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.22, C:0.12, G:0.14, T:0.53
Consensus pattern (16 bp):
TTTATTTACTAGCGTA
Found at i:86685763 original size:13 final size:14
Alignment explanation
Indices: 86685730--86685763 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
86685720 GCCCGGAGGC
*
86685730 TAAAGAAAAAGTGA
1 TAAAAAAAAAGTGA
86685744 TAAAAAAAAAGTGA
1 TAAAAAAAAAGTGA
86685758 TGAAAA
1 T-AAAA
86685764 GTTTTCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.15
Consensus pattern (14 bp):
TAAAAAAAAAGTGA
Found at i:86687047 original size:9 final size:9
Alignment explanation
Indices: 86687033--86687121 Score: 57
Period size: 9 Copynumber: 10.3 Consensus size: 9
86687023 AGAAATAAAT
86687033 ATATATATA
1 ATATATATA
86687042 ATATATA-A
1 ATATATATA
*
86687050 AAATAATATTA
1 ATAT-ATA-TA
86687061 ATATATA-A
1 ATATATATA
86687069 ATATA-A-A
1 ATATATATA
86687076 A-ATATATA
1 ATATATATA
* *
86687084 AAATATTTA
1 ATATATATA
86687093 GATATA-A-A
1 -ATATATATA
* *
86687101 ATATTTAGA
1 ATATATATA
86687110 ATATATATA
1 ATATATATA
86687119 ATA
1 ATA
86687122 AAATAGATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
6 3 0.05
7 8 0.13
8 14 0.22
9 27 0.43
10 7 0.11
11 4 0.06
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (9 bp):
ATATATATA
Found at i:86687062 original size:19 final size:19
Alignment explanation
Indices: 86687029--86687086 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
86687019 AAATAGAAAT
86687029 AAATATATATATAATATATAA
1 AAATA-ATAT-TAATATATAA
86687050 AAATAATATTAATATATAA
1 AAATAATATTAATATATAA
*
86687069 ATATAA-A--AATATATAA
1 AAATAATATTAATATATAA
86687085 AA
1 AA
86687087 TATTTAGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
16 10 0.29
18 1 0.03
19 15 0.43
20 4 0.11
21 5 0.14
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAATAATATTAATATATAA
Found at i:86687073 original size:34 final size:35
Alignment explanation
Indices: 86687002--86687143 Score: 109
Period size: 34 Copynumber: 4.1 Consensus size: 35
86686992 TTTTGTATTG
* * * *
86687002 TATATAATGTATACAAAA-A-ATAGAAATAAATATA
1 TATATAATATATA-AAAATAGATATAAATATATAAA
*
86687036 TATATAATATATAAAAATA-ATATTAATATATAAA
1 TATATAATATATAAAAATAGATATAAATATATAAA
* *
86687070 TATAAAAATATATAAAATATTTAGATATAAAATATTTAGAA
1 TAT-ATAATATATAAAA-A--TAGATAT-AAATATATA-AA
86687111 TATAT-ATA-AT-AAAATAGATAT-AATATATAAA
1 TATATAATATATAAAAATAGATATAAATATATAAA
86687142 TA
1 TA
86687144 AATTGAATAT
Statistics
Matches: 90, Mismatches: 10, Indels: 19
0.76 0.08 0.16
Matches are distributed among these distances:
31 4 0.04
32 7 0.08
33 4 0.04
34 34 0.38
35 12 0.13
36 2 0.02
37 3 0.03
38 4 0.04
39 7 0.08
40 8 0.09
41 5 0.06
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.35
Consensus pattern (35 bp):
TATATAATATATAAAAATAGATATAAATATATAAA
Found at i:86687088 original size:25 final size:24
Alignment explanation
Indices: 86687025--86687143 Score: 109
Period size: 24 Copynumber: 4.9 Consensus size: 24
86687015 CAAAAAATAG
*
86687025 AAATAAATAT-ATATATAATATATA
1 AAATATATATAATATATAA-ATATA
86687049 AAA-ATAATATTAATATATAAATATAA
1 AAATAT-ATA-TAATATATAAATAT-A
* * *
86687075 AAATATATAAAATATTTAGATATA
1 AAATATATATAATATATAAATATA
* * *
86687099 AAATATTTAGAATATATATA-ATA
1 AAATATATATAATATATAAATATA
*
86687122 AAATAGATATAATATATAAATA
1 AAATATATATAATATATAAATA
86687144 AATTGAATAT
Statistics
Matches: 77, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
23 20 0.26
24 24 0.31
25 16 0.21
26 15 0.19
27 2 0.03
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (24 bp):
AAATATATATAATATATAAATATA
Found at i:86687099 original size:15 final size:16
Alignment explanation
Indices: 86687079--86687114 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
86687069 ATATAAAAAT
86687079 ATATAAAATATTTAG-
1 ATATAAAATATTTAGA
86687094 ATATAAAATATTTAGA
1 ATATAAAATATTTAGA
86687110 ATATA
1 ATATA
86687115 TATAATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (16 bp):
ATATAAAATATTTAGA
Found at i:86687153 original size:22 final size:22
Alignment explanation
Indices: 86687025--86687164 Score: 85
Period size: 23 Copynumber: 6.2 Consensus size: 22
86687015 CAAAAAATAG
*
86687025 AAATAAATATATATATAATATAT
1 AAATAAA-ATAGATATAATATAT
86687048 --A-AAAATA-ATATTAATATAT
1 AAATAAAATAGATA-TAATATAT
* * *
86687067 AAATATAAAAATATATAAAATATTT
1 -AA-AT-AAAATAGATATAATATAT
** *
86687092 AGATATAAAATATTTAGAATATAT
1 A-A-ATAAAATAGATATAATATAT
86687116 ATAATAAAATAGATATAATATAT
1 A-AATAAAATAGATATAATATAT
*
86687139 AAAT-AAATTGAATATAATAT-T
1 AAATAAAATAG-ATATAATATAT
86687160 AAATA
1 AAATA
86687165 GATAAATAAA
Statistics
Matches: 96, Mismatches: 10, Indels: 23
0.74 0.08 0.18
Matches are distributed among these distances:
18 3 0.03
19 11 0.11
20 3 0.03
21 11 0.11
22 12 0.12
23 19 0.20
24 18 0.19
25 16 0.17
26 3 0.03
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (22 bp):
AAATAAAATAGATATAATATAT
Found at i:86687570 original size:13 final size:13
Alignment explanation
Indices: 86687552--86687578 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86687542 GTTATTCATA
86687552 ATTAATATGAATT
1 ATTAATATGAATT
86687565 ATTAATATGAATT
1 ATTAATATGAATT
86687578 A
1 A
86687579 GAGACTCGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
ATTAATATGAATT
Found at i:86687767 original size:19 final size:21
Alignment explanation
Indices: 86687739--86687788 Score: 70
Period size: 19 Copynumber: 2.5 Consensus size: 21
86687729 AAATTAAAAT
86687739 TTTATATATATA-TTTAT-TA
1 TTTATATATATATTTTATATA
*
86687758 TTTATCTATATATTTTATATA
1 TTTATATATATATTTTATATA
86687779 TTTA-ATATAT
1 TTTATATATAT
86687789 TTAATATCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 11 0.41
20 10 0.37
21 6 0.22
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTATATATATATTTTATATA
Found at i:86687887 original size:17 final size:17
Alignment explanation
Indices: 86687865--86687903 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
86687855 CTGACTCCAT
*
86687865 TTTTAT-TTTCTAGTTTA
1 TTTTATATTT-TAGTATA
86687882 TTTTATATTTTAGTATA
1 TTTTATATTTTAGTATA
86687899 TTTTA
1 TTTTA
86687904 CATCTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTATATTTTAGTATA
Found at i:86688069 original size:15 final size:17
Alignment explanation
Indices: 86688039--86688070 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
86688029 GTCAAAATCT
86688039 TTTTATGCAGTTATATA
1 TTTTATGCAGTTATATA
86688056 TTTTATG-A-TTATATA
1 TTTTATGCAGTTATATA
86688071 AATGAAACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTTATGCAGTTATATA
Found at i:86688719 original size:18 final size:18
Alignment explanation
Indices: 86688692--86688734 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
86688682 CGCATAAAAA
* *
86688692 GAAAGCAAATAAATAAAC
1 GAAAGAAAATAAACAAAC
*
86688710 GAAAGAAAATAAACAAAT
1 GAAAGAAAATAAACAAAC
86688728 GAAAGAA
1 GAAAGAA
86688735 GGGGGAAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.07, G:0.14, T:0.09
Consensus pattern (18 bp):
GAAAGAAAATAAACAAAC
Found at i:86693479 original size:15 final size:15
Alignment explanation
Indices: 86693459--86693489 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
86693449 GACGGTTCCG
86693459 TGTGCTCTGATTCAT
1 TGTGCTCTGATTCAT
86693474 TGTGCTCTGATTCAT
1 TGTGCTCTGATTCAT
86693489 T
1 T
86693490 ACTGATACAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.19, G:0.19, T:0.48
Consensus pattern (15 bp):
TGTGCTCTGATTCAT
Found at i:86696935 original size:20 final size:19
Alignment explanation
Indices: 86696905--86696988 Score: 70
Period size: 20 Copynumber: 4.4 Consensus size: 19
86696895 GATGTTAGAA
86696905 TATTAATTCTATTATATATT
1 TATT-ATTCTATTATATATT
86696925 TATCTATTCTATTATATA--
1 TAT-TATTCTATTATATATT
*
86696943 TA-TATTCTAATATATATT
1 TATTATTCTATTATATATT
86696961 AGTATTATT-T-TTATATTATT
1 --TATTATTCTATTATA-TATT
86696981 TATCTATT
1 TAT-TATT
86696989 TCTTATCTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
16 13 0.24
18 5 0.09
19 8 0.15
20 23 0.43
21 5 0.09
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.60
Consensus pattern (19 bp):
TATTATTCTATTATATATT
Found at i:86696950 original size:16 final size:17
Alignment explanation
Indices: 86696910--86696959 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 17
86696900 TAGAATATTA
86696910 ATTCTATTATATATTTATCT
1 ATTCTATTATATA--TA-CT
86696930 ATTCTATTATATATA-T
1 ATTCTATTATATATACT
*
86696946 ATTCTAATATATAT
1 ATTCTATTATATAT
86696960 TAGTATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 14 0.48
18 2 0.07
20 13 0.45
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTCTATTATATATACT
Found at i:86698714 original size:18 final size:18
Alignment explanation
Indices: 86698693--86698729 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
86698683 AATTCGACGC
* *
86698693 AGTGGATAAATTAGATAA
1 AGTGGAAAAATGAGATAA
86698711 AGTGGAAAAATGAGATAA
1 AGTGGAAAAATGAGATAA
86698729 A
1 A
86698730 CCAGCTTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.24, T:0.22
Consensus pattern (18 bp):
AGTGGAAAAATGAGATAA
Found at i:86701605 original size:17 final size:17
Alignment explanation
Indices: 86701583--86701616 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
86701573 ATAGATTCGC
*
86701583 TTAGATATACTTAGTAT
1 TTAGATATAATTAGTAT
86701600 TTAGATATAATTAGTAT
1 TTAGATATAATTAGTAT
86701617 AATATACGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (17 bp):
TTAGATATAATTAGTAT
Found at i:86704186 original size:29 final size:29
Alignment explanation
Indices: 86704158--86704259 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
86704148 CCTCCGAGCT
** * * *
86704158 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
86704187 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
86704216 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
86704245 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
86704260 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:86712046 original size:29 final size:29
Alignment explanation
Indices: 86712018--86712119 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
86712008 CCTCCGAGCT
** * * *
86712018 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
86712047 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
86712076 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
86712105 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
86712120 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:86716961 original size:16 final size:17
Alignment explanation
Indices: 86716940--86716978 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
86716930 GCTGTAACGC
*
86716940 CCCAAAAATCTCGAAA-
1 CCCAAAAATCCCGAAAT
86716956 CCCAAAAATCCCGAAAT
1 CCCAAAAATCCCGAAAT
86716973 CCCAAA
1 CCCAAA
86716979 CTTTTTTTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.49, C:0.36, G:0.05, T:0.10
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:86718496 original size:29 final size:28
Alignment explanation
Indices: 86718453--86718558 Score: 131
Period size: 29 Copynumber: 3.7 Consensus size: 28
86718443 CATGACTATG
*
86718453 AATGTGACTGGGCCTAATGGGCCATATA
1 AATGTGATTGGGCCTAATGGGCCATATA
*
86718481 AATGTGATTTGGGCCTAATAGGCCATATA
1 AATGTGA-TTGGGCCTAATGGGCCATATA
* * *
86718510 CAGGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATA
* *
86718539 AATATGATTGGGCTTAATGG
1 AATGTGATTGGGCCTAATGG
86718559 ACCAGATACA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
28 19 0.28
29 48 0.72
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATA
Found at i:86718529 original size:58 final size:57
Alignment explanation
Indices: 86718461--86718571 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 57
86718451 TGAATGTGAC
* *
86718461 TGGGCCTAATGGGCCATATAAATGTGATTTGGGCCTAATAGG-CCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGA-TTGGGCCTAAT-GGACCAGATACAGGTGATT
* *
86718519 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGACCAGATACAGGT
1 TGGGCCTAATGGGCCATATAAATATGATTGGGCCTAATGGACCAGATACAGGT
86718572 ATGTGAAATT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
56 2 0.04
57 21 0.44
58 25 0.52
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (57 bp):
TGGGCCTAATGGGCCATATAAATATGATTGGGCCTAATGGACCAGATACAGGTGATT
Found at i:86719452 original size:3 final size:3
Alignment explanation
Indices: 86719444--86719470 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
86719434 TTAATACTTA
86719444 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
86719471 TCCATTGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:86724689 original size:16 final size:17
Alignment explanation
Indices: 86724653--86724690 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
86724643 TTTAAAAAGG
*
86724653 AAAACAAATGAATCTTA
1 AAAAAAAATGAATCTTA
*
86724670 AAAAAAAATGAGTCTTA
1 AAAAAAAATGAATCTTA
86724687 AAAA
1 AAAA
86724691 CTTAATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.63, C:0.08, G:0.08, T:0.21
Consensus pattern (17 bp):
AAAAAAAATGAATCTTA
Found at i:86731376 original size:14 final size:13
Alignment explanation
Indices: 86731353--86731383 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
86731343 GGGATATCAA
86731353 AACAATAATTAAG
1 AACAATAATTAAG
86731366 AACACATAATTAAG
1 AACA-ATAATTAAG
86731380 AACA
1 AACA
86731384 GGTTAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:86733342 original size:58 final size:57
Alignment explanation
Indices: 86733273--86733383 Score: 150
Period size: 57 Copynumber: 1.9 Consensus size: 57
86733263 TGAATGTGAC
* *
86733273 TGGGCCCAATGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCCAATGGGCCATATAAATATGA-TTGGGCCTAATGGGCCAGATACAGGTGATT
* * * * *
86733331 TGGGCCGAATGGGGCATATGAATATGATTGGGCTTAATGGGCCAGATATAGGT
1 TGGGCCCAATGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGT
86733384 ATGTGAAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 23 0.50
58 23 0.50
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.27
Consensus pattern (57 bp):
TGGGCCCAATGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:86733370 original size:28 final size:29
Alignment explanation
Indices: 86733260--86733374 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
86733250 GTGAGCATGA
* *
86733260 ATATGAATGTGA-CTGGGCCCAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
86733288 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
86733317 ATAT-ACAGGTGATTTGGGCCGAATGGGGC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
86733346 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
86733374 A
1 A
86733375 GATATAGGTA
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 26 0.36
29 46 0.63
30 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:86747427 original size:435 final size:435
Alignment explanation
Indices: 86746617--86747489 Score: 1746
Period size: 435 Copynumber: 2.0 Consensus size: 435
86746607 AAATTTATAA
86746617 ATGAATCGTTCTTGAGACTTACTTATTATCATGATTAAGGCAAGTGTACCTATCAAACAGTAGTA
1 ATGAATCGTTCTTGAGACTTACTTATTATCATGATTAAGGCAAGTGTACCTATCAAACAGTAGTA
86746682 TAGTTGAGCAAGACCAGTTTGTCAAACCAAAGGAACTACGAGTACTAGTATTTACTTTCTTTTAA
66 TAGTTGAGCAAGACCAGTTTGTCAAACCAAAGGAACTACGAGTACTAGTATTTACTTTCTTTTAA
86746747 TTATCTAGCCTAAAAATTAAGAGGTTTGGTTATCTAAACTAATTACTAACTAAGAATGCACAGCA
131 TTATCTAGCCTAAAAATTAAGAGGTTTGGTTATCTAAACTAATTACTAACTAAGAATGCACAGCA
86746812 AGAAGATTTGGGAAAATACTTTTGAGAAAATTCGATTGATTAAGACAATACCTAAGGAAAAATCC
196 AGAAGATTTGGGAAAATACTTTTGAGAAAATTCGATTGATTAAGACAATACCTAAGGAAAAATCC
86746877 ACCTAGACTTCACTTGTTATTTAACTTTGAATCAGACGATTTATTCATTTAACTTGATCCGTAGA
261 ACCTAGACTTCACTTGTTATTTAACTTTGAATCAGACGATTTATTCATTTAACTTGATCCGTAGA
86746942 AATCCCTAAGTTATATTATTATCTCTCTCGAGACTAATAACGTCTAACCCTAGGTTGAATAATTG
326 AATCCCTAAGTTATATTATTATCTCTCTCGAGACTAATAACGTCTAACCCTAGGTTGAATAATTG
86747007 AAATCTCTTTCTAATTAACACACTAGAATTGCATTAACTCCATCT
391 AAATCTCTTTCTAATTAACACACTAGAATTGCATTAACTCCATCT
86747052 ATGAATCGTTCTTGAGACTTACTTATTATCATGATTAAGGCAAGTGTACCTATCAAACAGTAGTA
1 ATGAATCGTTCTTGAGACTTACTTATTATCATGATTAAGGCAAGTGTACCTATCAAACAGTAGTA
86747117 TAGTTGAGCAAGACCAGTTTGTCAAACCAAAGGAACTACGAGTACTAGTATTTACTTTCTTTTAA
66 TAGTTGAGCAAGACCAGTTTGTCAAACCAAAGGAACTACGAGTACTAGTATTTACTTTCTTTTAA
86747182 TTATCTAGCCTAAAAATTAAGAGGTTTGGTTATCTAAACTAATTACTAACTAAGAATGCACAGCA
131 TTATCTAGCCTAAAAATTAAGAGGTTTGGTTATCTAAACTAATTACTAACTAAGAATGCACAGCA
86747247 AGAAGATTTGGGAAAATACTTTTGAGAAAATTCGATTGATTAAGACAATACCTAAGGAAAAATCC
196 AGAAGATTTGGGAAAATACTTTTGAGAAAATTCGATTGATTAAGACAATACCTAAGGAAAAATCC
86747312 ACCTAGACTTCACTTGTTATTTAACTTTGAATCAGACGATTTATTCATTTAACTTGATCCGTAGA
261 ACCTAGACTTCACTTGTTATTTAACTTTGAATCAGACGATTTATTCATTTAACTTGATCCGTAGA
86747377 AATCCCTAAGTTATATTATTATCTCTCTCGAGACTAATAACGTCTAACCCTAGGTTGAATAATTG
326 AATCCCTAAGTTATATTATTATCTCTCTCGAGACTAATAACGTCTAACCCTAGGTTGAATAATTG
86747442 AAATCTCTTTCTAATTAACACACTAGAATTGCATTAACTCCATCT
391 AAATCTCTTTCTAATTAACACACTAGAATTGCATTAACTCCATCT
86747487 ATG
1 ATG
86747490 GATTCCCTTA
Statistics
Matches: 438, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
435 438 1.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (435 bp):
ATGAATCGTTCTTGAGACTTACTTATTATCATGATTAAGGCAAGTGTACCTATCAAACAGTAGTA
TAGTTGAGCAAGACCAGTTTGTCAAACCAAAGGAACTACGAGTACTAGTATTTACTTTCTTTTAA
TTATCTAGCCTAAAAATTAAGAGGTTTGGTTATCTAAACTAATTACTAACTAAGAATGCACAGCA
AGAAGATTTGGGAAAATACTTTTGAGAAAATTCGATTGATTAAGACAATACCTAAGGAAAAATCC
ACCTAGACTTCACTTGTTATTTAACTTTGAATCAGACGATTTATTCATTTAACTTGATCCGTAGA
AATCCCTAAGTTATATTATTATCTCTCTCGAGACTAATAACGTCTAACCCTAGGTTGAATAATTG
AAATCTCTTTCTAATTAACACACTAGAATTGCATTAACTCCATCT
Found at i:86753330 original size:43 final size:43
Alignment explanation
Indices: 86753244--86753330 Score: 97
Period size: 43 Copynumber: 2.0 Consensus size: 43
86753234 AAATCATACA
* **
86753244 ATGCCAACGTCCCAGACGTGGTCTTACACGTAGCCACAAATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAAACACAAATCG
* *
86753287 ATGCC-ACTGTCCCAGACAG-GGTCTTACTCATAAACACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACATAAACACAAATCG
86753330 A
1 A
86753331 AACCACATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
42 2 0.05
43 34 0.92
44 1 0.03
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACATAAACACAAATCG
Found at i:86768359 original size:27 final size:27
Alignment explanation
Indices: 86768276--86768713 Score: 258
Period size: 27 Copynumber: 16.2 Consensus size: 27
86768266 TAACTGTAGG
* ** *
86768276 ATTACTGAAATACCCCT-ATAGGATAGA
1 ATTACTGAAATACCCTTGATTTG-TAAA
* ** *
86768303 ATTACTGAAATGCCCTTG-TAGGGAAGA
1 ATTACTGAAATACCCTTGATTTGTAA-A
* **
86768330 ATTACTGAAATACCCTTGGTTTACAAA
1 ATTACTGAAATACCCTTGATTTGTAAA
*** * *
86768357 ATTACTG-AATACCCACAATTAGCAAA
1 ATTACTGAAATACCCTTGATTTGTAAA
** * *
86768383 ATTACCAAAATACCCCTGGTTTGTAAA
1 ATTACTGAAATACCCTTGATTTGTAAA
* * *
86768410 ATTAC-CAACATACCCTTGATATGTGAA
1 ATTACTGAA-ATACCCTTGATTTGTAAA
* **
86768437 ATTACTGAAATACCCTCGACCTGTAAA
1 ATTACTGAAATACCCTTGATTTGTAAA
** * **
86768464 ATTACCAAAATACCCTCGACCTGTAAA
1 ATTACTGAAATACCCTTGATTTGTAAA
* * *
86768491 ATTACCGAAATACCCTCGACTTGTAAA
1 ATTACTGAAATACCCTTGATTTGTAAA
* *
86768518 ATTACTAAAATACCCTCGATTTGTAAA
1 ATTACTGAAATACCCTTGATTTGTAAA
* * ** *
86768545 GTGACCAAAATACCCCTGATTTGTAAA
1 ATTACTGAAATACCCTTGATTTGTAAA
* * * *
86768572 ATTTCTAAAATACCCTTAATTTGGAAA
1 ATTACTGAAATACCCTTGATTTGTAAA
* **
86768599 ATTA-TAGAAATACCCCTGATTTACAAA
1 ATTACT-GAAATACCCTTGATTTGTAAA
* **
86768626 ATTACAGAAATACCCTTGACTTTAAAAAA
1 ATTACTGAAATACCCTTGA-TTT-GTAAA
* * * *
86768655 ATTA-TAGAACTACCATTGGTTTGCAAA
1 ATTACT-GAAATACCCTTGATTTGTAAA
*
86768682 ATTACTGAAATACCCTTGGTTTGTAAA
1 ATTACTGAAATACCCTTGATTTGTAAA
*
86768709 TTTAC
1 ATTAC
86768714 CAAAACACCC
Statistics
Matches: 328, Mismatches: 71, Indels: 24
0.78 0.17 0.06
Matches are distributed among these distances:
26 22 0.07
27 276 0.84
28 12 0.04
29 18 0.05
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.29
Consensus pattern (27 bp):
ATTACTGAAATACCCTTGATTTGTAAA
Found at i:86768723 original size:27 final size:27
Alignment explanation
Indices: 86768670--86768726 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
86768660 AGAACTACCA
** *
86768670 TTGGTTTGCAAAATTACTGAAATACCC
1 TTGGTTTGCAAAATTACCAAAACACCC
* *
86768697 TTGGTTTGTAAATTTACCAAAACACCC
1 TTGGTTTGCAAAATTACCAAAACACCC
86768724 TTG
1 TTG
86768727 TAGGGTGAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (27 bp):
TTGGTTTGCAAAATTACCAAAACACCC
Found at i:86768826 original size:27 final size:27
Alignment explanation
Indices: 86768757--86768848 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
86768747 ACCCCTAATA
* * *
86768757 GGTAAAAAGCCCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
86768784 GGTAAAATGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* ** *
86768811 GGTAAAGTGATTGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
86768838 GGTAAAATGAC
1 GGTAAAATGAC
86768849 GATTATGCCC
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:86769029 original size:27 final size:27
Alignment explanation
Indices: 86768989--86769069 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
86768979 GGAAGTTCTG
* * *
86768989 TACTGTTGACTATGTCACATTCACTGTA
1 TACTGGTGGCTATGCCACATT-ACTGTA
*
86769017 -ACTTGTGGCTATGCCACAATTACTG-A
1 TACTGGTGGCTATGCCAC-ATTACTGTA
*
86769043 TACTGGTGGCTTTGCCACATTTACTGT
1 TACTGGTGGCTATGCCACA-TTACTGT
86769070 TTCTGGCAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
26 2 0.05
27 38 0.88
28 3 0.07
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACATTACTGTA
Found at i:86769639 original size:18 final size:17
Alignment explanation
Indices: 86769590--86769639 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
86769580 CTAGTCTAGG
86769590 AAAACACGAGTTT-TAA
1 AAAACACGAGTTTCTAA
*
86769606 AAATAGCACGATTTTCTAA
1 AAA-A-CACGAGTTTCTAA
86769625 AAAACACGAGCTTTC
1 AAAACACGAG-TTTC
86769640 AGCAACAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 3 0.11
17 6 0.21
18 13 0.46
19 6 0.21
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.26
Consensus pattern (17 bp):
AAAACACGAGTTTCTAA
Found at i:86773193 original size:40 final size:39
Alignment explanation
Indices: 86773124--86773356 Score: 164
Period size: 40 Copynumber: 5.8 Consensus size: 39
86773114 GGATGTAGCG
* * * * *
86773124 ACTCGCTCGATTGTCTTCGGGACA-TAGCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGA-ATTAACCCGGTT-TAGTA
* *
86773164 ATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTA
1 ACTCGCACAATTGCCTTCGGGAATTAACCCGG-TTTAGTA
* *
86773204 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGAATTAACCCGG-TTTAGTA
* * * *
86773244 ACTCGCACAAATGCCTTCGGGACTTAACCCGATTTTGGTA
1 ACTCGCACAATTGCCTTCGGGAATTAACCCG-GTTTAGTA
* * * * * *
86773284 ACTCGCACAAATGCCTTTGGGAGTTGACCCAGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGAATTAACCC-GGTTTAGTA
* ** * *
86773324 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAATTGCCTTCGGGAATTAACCCGG
86773357 ATACCATTCG
Statistics
Matches: 162, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
39 3 0.02
40 132 0.81
41 27 0.17
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGAATTAACCCGGTTTAGTA
Found at i:86773236 original size:80 final size:79
Alignment explanation
Indices: 86773124--86773358 Score: 238
Period size: 80 Copynumber: 2.9 Consensus size: 79
86773114 GGATGTAGCG
* * * * * * * *
86773124 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTT-TAGTAATTCGCACAAATGCCTTCGGGACTT
86773189 AGCCCGGATTTAGTA
65 AGCCCGGATTTAGTA
* *
86773204 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGACTT
* *
86773269 AACCC-GATTTTGGTA
65 AGCCCGGA-TTTAGTA
* * * * * * * *
86773284 ACTCGCACAAATGCCTTTGGGAGTTGACCCAGATTTAGTCACTTAGCACAAAAGCCTTCGGGACT
1 ACTCGCACGAATGCCTTCGGGACTTAACCC-GGTTTAGT-AATTCGCACAAATGCCTTCGGGACT
86773349 TAGCCCGGAT
64 TAGCCCGGAT
86773359 ACCATTCGAA
Statistics
Matches: 127, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
79 2 0.02
80 93 0.73
81 30 0.24
82 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (79 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTAGTAATTCGCACAAATGCCTTCGGGACTTA
GCCCGGATTTAGTA
Found at i:86773333 original size:41 final size:40
Alignment explanation
Indices: 86773168--86773355 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
86773158 ATAGTGATTC
* * * *
86773168 GCACAATTGCCTTCGGGAATTAGCCCGGA-TTTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCC-GATTTTAGTAACTA
* * * *
86773208 GCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGATTTTAGTAACTA
* *
86773248 GCACAAATGCCTTCGGGACTTAACCCGATTTTGGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGATTTTAGTAACTA
* * * *
86773288 GCACAAATGCCTTTGGGAGTTGACCCAGA-TTTAGTCACTTA
1 GCACAAATGCCTTCGGGACTTAACCC-GATTTTAGTAAC-TA
* *
86773329 GCACAAAAGCCTTCGGGACTTAGCCCG
1 GCACAAATGCCTTCGGGACTTAACCCG
86773356 GATACCATTC
Statistics
Matches: 126, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 101 0.80
41 24 0.19
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAACCCGATTTTAGTAACTA
Done.