Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 285 of 770
Found at i:86775428 original size:16 final size:16
Alignment explanation
Indices: 86775407--86775437 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86775397 CAAGATCTGT
86775407 CTTAGGCTTCATTCCC
1 CTTAGGCTTCATTCCC
*
86775423 CTTAGGTTTCATTCC
1 CTTAGGCTTCATTCC
86775438 TCTAAAGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.32, G:0.13, T:0.42
Consensus pattern (16 bp):
CTTAGGCTTCATTCCC
Found at i:86787819 original size:46 final size:46
Alignment explanation
Indices: 86787766--86787941 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
86787756 TATTTGGGCA
86787766 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
86787812 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
86787859 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
86787905 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86787942 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:86787921 original size:93 final size:93
Alignment explanation
Indices: 86787762--86787933 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
86787752 GGGATATTTG
* *
86787762 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
86787827 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
86787855 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
86787920 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
86787934 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:86790930 original size:15 final size:15
Alignment explanation
Indices: 86790887--86790950 Score: 80
Period size: 14 Copynumber: 4.4 Consensus size: 15
86790877 GTATCTTGGG
86790887 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
86790902 -TTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
86790916 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
86790931 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
86790945 TTTCTT
1 TTTCTT
86790951 GTTATCTTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
14 24 0.56
15 17 0.40
16 2 0.05
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:86793380 original size:46 final size:46
Alignment explanation
Indices: 86793330--86793505 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
86793320 TATTTGGGCA
86793330 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
86793376 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
86793423 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
86793469 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86793506 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:86793485 original size:93 final size:93
Alignment explanation
Indices: 86793326--86793497 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
86793316 TGGATATTTG
* *
86793326 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
86793391 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
86793419 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
86793484 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
86793498 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:86795329 original size:39 final size:39
Alignment explanation
Indices: 86795261--86795406 Score: 186
Period size: 39 Copynumber: 3.7 Consensus size: 39
86795251 TACAAAGCAG
*
86795261 GCGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCT
1 GCGGGAC-TT-AGCCCGGATATAACACCAGCACGAAAGCCT
*
86795301 GCGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCT
1 GCGGGAC-TTAGCCCGGATATAACACCAGCACGAAAGCCT
* * * *
86795341 TCAGGACTTAGCCCGGATATAACACCAACACGAATGCCT
1 GCGGGACTTAGCCCGGATATAACACCAGCACGAAAGCCT
* *
86795380 TCGGGACTTAGCCCGTATATAACACCA
1 GCGGGACTTAGCCCGGATATAACACCA
86795407 TTATAAAGTC
Statistics
Matches: 98, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 77 0.79
40 21 0.21
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.18
Consensus pattern (39 bp):
GCGGGACTTAGCCCGGATATAACACCAGCACGAAAGCCT
Found at i:86795510 original size:28 final size:28
Alignment explanation
Indices: 86795478--86795560 Score: 103
Period size: 28 Copynumber: 3.0 Consensus size: 28
86795468 TATTTAATCA
* *
86795478 CTCAATATTTTGCACACTAAGTGTCATT
1 CTCAATATTTCGCACACTAAGTGCCATT
* *
86795506 CTCAATATCTCGCACATTAAGTGCCATT
1 CTCAATATTTCGCACACTAAGTGCCATT
* * *
86795534 CTCAATATTTCGTACACTGAGTACCAT
1 CTCAATATTTCGCACACTAAGTGCCAT
86795561 ATTTGATTGC
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (28 bp):
CTCAATATTTCGCACACTAAGTGCCATT
Found at i:86798424 original size:39 final size:39
Alignment explanation
Indices: 86798357--86798579 Score: 304
Period size: 39 Copynumber: 5.7 Consensus size: 39
86798347 ACAAAGCATG
* ** *
86798357 CGGGACTTTGAGCCCGGATATAATACCAGCAC-AAAACCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
86798397 CAGGACTTTAGCCCGAATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
*
86798437 CGGGGCTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
86798476 CGGGACATAGCTCGAATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
86798515 CGGGACTTAGCTCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
86798554 CGGGATTTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
86798580 TTATAAAGTC
Statistics
Matches: 165, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 148 0.90
40 17 0.10
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:86798685 original size:28 final size:28
Alignment explanation
Indices: 86798652--86798717 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
86798642 ATTTAATCAT
* *
86798652 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
86798680 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
86798708 TCAATATTTC
1 TCAATATTTC
86798718 ATACACTGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:86798733 original size:28 final size:28
Alignment explanation
Indices: 86798663--86798733 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
86798653 CAATATTTTG
** *
86798663 CACACTAAGTGTCATTCTCAATATCTCG
1 CACACTAAGTACCATTCTCAATATCTCA
* * *
86798691 CACATTAAGTGCCATTCTCAATATTTCA
1 CACACTAAGTACCATTCTCAATATCTCA
* *
86798719 TACACTGAGTACCAT
1 CACACTAAGTACCAT
86798734 ATTTGATTGC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.27, G:0.10, T:0.32
Consensus pattern (28 bp):
CACACTAAGTACCATTCTCAATATCTCA
Found at i:86802225 original size:29 final size:29
Alignment explanation
Indices: 86802186--86802264 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
86802176 CTTAATAATC
*
86802186 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
86802216 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
86802245 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
86802265 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:86814724 original size:40 final size:40
Alignment explanation
Indices: 86814669--86814878 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
86814659 AACATTGGAA
86814669 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
86814709 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
86814749 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
86814789 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
86814828 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
86814869 CTATATCCGG
1 ATATATCCGG
86814879 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:86822858 original size:40 final size:40
Alignment explanation
Indices: 86822803--86822972 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
86822793 AACATTGGAA
86822803 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
86822843 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
86822883 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
86822922 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
86822963 CTATATCCGG
1 ATATATCCGG
86822973 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:86825589 original size:6 final size:6
Alignment explanation
Indices: 86825580--86825762 Score: 139
Period size: 6 Copynumber: 29.8 Consensus size: 6
86825570 TTGCATTCAC
* * *
86825580 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
86825629 -TTACTA ATTCTG ATTAATCT- ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG A-T--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
86825679 -TCACCT- ATTCTG ATTTTTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG
1 AT--TCTG ATTCTG A-TTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG
86825728 ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
86825763 CATTTTGGTT
Statistics
Matches: 143, Mismatches: 14, Indels: 40
0.73 0.07 0.20
Matches are distributed among these distances:
5 14 0.10
6 106 0.74
7 17 0.12
8 3 0.02
9 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:86825663 original size:50 final size:49
Alignment explanation
Indices: 86825605--86825709 Score: 142
Period size: 50 Copynumber: 2.1 Consensus size: 49
86825595 CTGTCACCTA
*
86825605 ATTCTGATTCTGATTCTAATTCTGTTA-CTAATTCTGATTAATCT-ATTCTG
1 ATTCTGATTCTGATTCTAATTCTGTCACCT-ATTCTGATT--TCTGATTCTG
* *
86825655 ATTCTGATTCTGATTCTGATTCTGTCACCTATTCTGATTTTTGATTCTG
1 ATTCTGATTCTGATTCTAATTCTGTCACCTATTCTGATTTCTGATTCTG
86825704 ATTCTG
1 ATTCTG
86825710 TTACTAATAT
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
48 2 0.04
49 12 0.24
50 34 0.68
51 2 0.04
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.50
Consensus pattern (49 bp):
ATTCTGATTCTGATTCTAATTCTGTCACCTATTCTGATTTCTGATTCTG
Found at i:86825780 original size:30 final size:30
Alignment explanation
Indices: 86825655--86825783 Score: 145
Period size: 30 Copynumber: 4.3 Consensus size: 30
86825645 ATCTATTCTG
* *
86825655 ATTCTGATTCTGATTCTGATTCTGTCACCT
1 ATTCTGATTCTGATTCTGATTCTGTTACCA
* *
86825685 ATTCTGATTTTTGATTCTGATTCTGTTACTA
1 ATTCTGA-TTCTGATTCTGATTCTGTTACCA
**
86825716 ATAT-TGATTCTGATTCTGATTCTGTTACTG
1 AT-TCTGATTCTGATTCTGATTCTGTTACCA
* *
86825746 ATTCTGATTCTGATTCTCATTTTGGTT-CCA
1 ATTCTGATTCTGATTCTGATTCT-GTTACCA
86825776 ATTCTGAT
1 ATTCTGAT
86825784 AATGTTTTGT
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.01
30 56 0.66
31 27 0.32
32 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGATTCTGTTACCA
Found at i:86827509 original size:40 final size:40
Alignment explanation
Indices: 86827450--86827657 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
86827440 CATTGGAATG
* * *
86827450 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
86827490 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
86827530 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
86827570 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
86827610 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
86827650 ATATCCGG
1 ATATCCGG
86827658 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 136 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:86835121 original size:40 final size:39
Alignment explanation
Indices: 86835077--86835269 Score: 242
Period size: 39 Copynumber: 4.9 Consensus size: 39
86835067 GTTCAAAACA
* * ** * *
86835077 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
86835117 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
86835157 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* * *
86835196 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACGATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
86835235 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
86835270 TTCATTCACA
Statistics
Matches: 137, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:86835188 original size:39 final size:39
Alignment explanation
Indices: 86835107--86835269 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
86835097 TATGGTAACC
* *
86835107 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
86835147 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
86835186 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
86835225 CGCACGATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
86835264 CGCACA
1 CGCACA
86835270 TTCATTCACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:86838727 original size:40 final size:40
Alignment explanation
Indices: 86838668--86838875 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
86838658 CATTGGAATG
* * *
86838668 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
86838708 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
86838748 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
86838788 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
86838828 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
86838868 ATATCCGG
1 ATATCCGG
86838876 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 136 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:86843288 original size:29 final size:29
Alignment explanation
Indices: 86843181--86843291 Score: 120
Period size: 29 Copynumber: 3.9 Consensus size: 29
86843171 CCCCTACATG
*
86843181 CATTCATTTGGCCCACTAGGCCCAA-TCT
1 CATTCATATGGCCCACTAGGCCCAATTCT
* * * *
86843209 TATTCAAATGGCCCATCT-GGCACAGTTCAT
1 CATTCATATGGCCCA-CTAGGCCCAATTC-T
*
86843239 -ATTCTTATGGCCCACTAGGCCCAATTCT
1 CATTCATATGGCCCACTAGGCCCAATTCT
*
86843267 CATTCATATGGCCCATTAGGCCCAA
1 CATTCATATGGCCCACTAGGCCCAA
86843292 ATCATATTAT
Statistics
Matches: 67, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
28 20 0.30
29 46 0.69
30 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (29 bp):
CATTCATATGGCCCACTAGGCCCAATTCT
Found at i:86843297 original size:58 final size:57
Alignment explanation
Indices: 86843189--86843299 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 57
86843179 TGCATTCATT
* **
86843189 TGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATCTGGCACAGTTCATATTCTTA
1 TGGCCCACTAGGCCCAATCTCATTCAAATGGCCCATCTGGCACAAATCATATTCTTA
* *
86843246 TGGCCCACTAGGCCCAATTCTCATTCATATGGCCCAT-TAGGCCCAAATCATATT
1 TGGCCCACTAGGCCCAA-TCTCATTCAAATGGCCCATCT-GGCACAAATCATATT
86843300 ATATTCATGC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
57 18 0.38
58 29 0.62
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (57 bp):
TGGCCCACTAGGCCCAATCTCATTCAAATGGCCCATCTGGCACAAATCATATTCTTA
Found at i:86843406 original size:19 final size:19
Alignment explanation
Indices: 86843382--86843418 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
86843372 AGCCCATCAA
*
86843382 GCCCATTTAGCCCATTCTG
1 GCCCATTTAGCCAATTCTG
*
86843401 GCCCATTTGGCCAATTCT
1 GCCCATTTAGCCAATTCT
86843419 CAACCCAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.35, G:0.16, T:0.32
Consensus pattern (19 bp):
GCCCATTTAGCCAATTCTG
Found at i:86843547 original size:16 final size:16
Alignment explanation
Indices: 86843515--86843550 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
86843505 ATAGCCCAAC
**
86843515 TTTCGGCTTTTTGGCA
1 TTTCGGCTTTTCCGCA
86843531 TTTCGGCTTTTCCGCA
1 TTTCGGCTTTTCCGCA
86843547 TTTC
1 TTTC
86843551 TGCATTTCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.06, C:0.25, G:0.19, T:0.50
Consensus pattern (16 bp):
TTTCGGCTTTTCCGCA
Found at i:86854574 original size:27 final size:26
Alignment explanation
Indices: 86854539--86854649 Score: 141
Period size: 27 Copynumber: 4.1 Consensus size: 26
86854529 AGCATAGCTT
* *
86854539 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
86854565 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
86854593 CCAGAACGGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
86854620 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
86854647 CCA
1 CCA
86854650 AGACGCTTCC
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.69
28 17 0.23
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:86854639 original size:54 final size:54
Alignment explanation
Indices: 86854539--86854649 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
86854529 AGCATAGCTT
*
86854539 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
86854593 CCAGAACGGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
86854647 CCA
1 CCA
86854650 AGACGCTTCC
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:86863746 original size:29 final size:27
Alignment explanation
Indices: 86863712--86863814 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
86863702 TACTCAATCA
*
86863712 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
86863741 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
86863770 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
86863799 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
86863815 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:86867443 original size:35 final size:35
Alignment explanation
Indices: 86867397--86867469 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
86867387 CTATATAAAA
*
86867397 ACACATTTTACATTGTCAGGAGTCATGACACTATC
1 ACACATTTTACATTGTCAGGAGTCATCACACTATC
86867432 ACACATTTTACATTGTCAGGAGTCATCACACTATC
1 ACACATTTTACATTGTCAGGAGTCATCACACTATC
86867467 ACA
1 ACA
86867470 GGTTATATAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (35 bp):
ACACATTTTACATTGTCAGGAGTCATCACACTATC
Found at i:86873144 original size:46 final size:46
Alignment explanation
Indices: 86873084--86873398 Score: 271
Period size: 46 Copynumber: 6.8 Consensus size: 46
86873074 TATTTTGGCA
* *
86873084 TCCGAACTCATTGAGTTGAGTTTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
* * * * * * * *
86873130 TCTGAACTCGTTGAGTTGAGTCTGAGTT-AGTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACT--TATGGATGCGA-ACG
*
86873177 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
* * * **
86873223 CCCGAGCTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
* * * * * * * *
86873269 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACT--TATGGATGCGA-ACG
* * *
86873316 TCCAAACTTGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
* *
86873362 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
86873399 GCGGGTTACA
Statistics
Matches: 206, Mismatches: 52, Indels: 22
0.74 0.19 0.08
Matches are distributed among these distances:
45 4 0.02
46 133 0.65
47 66 0.32
48 3 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
Found at i:86873344 original size:139 final size:139
Alignment explanation
Indices: 86873085--86873398 Score: 511
Period size: 139 Copynumber: 2.3 Consensus size: 139
86873075 ATTTTGGCAT
* ** *
86873085 CCGAACTCATTGAGTTGAGTTTGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAGTTGAG
1 CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAG
* * *
86873150 TCTGAGTTAGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGA
66 TCCGAGTTAGTGAAATGTAACTAGGCATCCAAACTCGTTGAGTTGAGTCTAAGTTCACTTATGGA
*
86873215 TGCGAATGC
131 TGCGAACGC
*
86873224 CCGAGCTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAG
1 CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAG
* *
86873289 TCCGAGTTCGTGAAATGTAACTAGGCATCCAAACTTGTTGAGTTGAGTCTAAGTTCACTTATGGA
66 TCCGAGTTAGTGAAATGTAACTAGGCATCCAAACTCGTTGAGTTGAGTCTAAGTTCACTTATGGA
86873354 TGCGAACGC
131 TGCGAACGC
* *
86873363 TCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
86873399 GCGGGTTACA
Statistics
Matches: 161, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
139 161 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (139 bp):
CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAG
TCCGAGTTAGTGAAATGTAACTAGGCATCCAAACTCGTTGAGTTGAGTCTAAGTTCACTTATGGA
TGCGAACGC
Found at i:86876323 original size:15 final size:15
Alignment explanation
Indices: 86876300--86876359 Score: 84
Period size: 15 Copynumber: 4.0 Consensus size: 15
86876290 GTATCGTATC
*
86876300 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
86876315 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
* * *
86876330 TTGGGTTTCTCTATC
1 TTGGATTTCTTTATT
86876345 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
86876360 CGGTTTTCTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.10, C:0.10, G:0.17, T:0.63
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:86876336 original size:30 final size:30
Alignment explanation
Indices: 86876300--86876359 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
86876290 GTATCGTATC
* *
86876300 TTGGGTTTCTTTATTTTGGATTTCTTTATT
1 TTGGGTTTCTCTATCTTGGATTTCTTTATT
86876330 TTGGGTTTCTCTATCTTGGATTTCTTTATT
1 TTGGGTTTCTCTATCTTGGATTTCTTTATT
86876360 CGGTTTTCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.10, C:0.10, G:0.17, T:0.63
Consensus pattern (30 bp):
TTGGGTTTCTCTATCTTGGATTTCTTTATT
Found at i:86878856 original size:46 final size:46
Alignment explanation
Indices: 86878790--86878966 Score: 166
Period size: 46 Copynumber: 3.8 Consensus size: 46
86878780 TATTTGGGCA
*
86878790 TCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
* * * * *
86878836 TCCAAACTGGTTGAGTTGAGTCCGAGTTC-GTGA--AATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---G
*
86878881 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-TCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAACG
* * **
86878929 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
86878967 CGGGTTACAT
Statistics
Matches: 104, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 59 0.57
47 26 0.25
48 3 0.03
49 1 0.01
50 2 0.02
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
Found at i:86878945 original size:93 final size:93
Alignment explanation
Indices: 86878786--86878956 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
86878776 TGGATATTTG
* *
86878786 GGCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGTGAACGTCCAAACTGGTTGAG
1 GGCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGTGAACGCCCAAACTCGTTGAG
86878851 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* * * *
86878879 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-TCGAACGCCCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGT-GAACGCCCAAACTCGTTGA
86878943 GTTGAGTCCGAGTT
65 GTTGAGTCCGAGTT
86878957 TGCTTATGGA
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGTGAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:86880827 original size:31 final size:31
Alignment explanation
Indices: 86880786--86880849 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
86880776 CCTTTTCATA
*
86880786 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
86880817 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
86880848 TT
1 TT
86880850 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:86881103 original size:24 final size:24
Alignment explanation
Indices: 86881043--86881279 Score: 295
Period size: 24 Copynumber: 10.0 Consensus size: 24
86881033 GCTTTATCAT
* *
86881043 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
86881068 ATCACTGGGGCAAAAGCCCTATTT-
1 ATAACTGGGGCATAAGCCCT-TTTG
* *
86881092 ATAACTGAGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
* *
86881115 ATAACTGGGGCGTAAACCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
86881139 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
86881163 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
* * *
86881186 ATAACGGGGGCGTAAGCCCATTTG
1 ATAACTGGGGCATAAGCCCTTTTG
86881210 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
86881234 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
86881257 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86881280 TCACTTCCTC
Statistics
Matches: 186, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
22 3 0.02
23 58 0.31
24 111 0.60
25 14 0.08
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:86881122 original size:47 final size:47
Alignment explanation
Indices: 86881042--86881279 Score: 302
Period size: 47 Copynumber: 5.0 Consensus size: 47
86881032 TGCTTTATCA
* * *
86881042 TATAACTGGAGGCCT-AGCCTCTTTTAATCACTGGGGCAAAAGCCCTATT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCT-TT
* * *
86881091 TATAACTGAGGCATAAGCCC-TTTAATAACTGGGGCGTAAACCCTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
*
86881137 TGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
* * * * *
86881185 AATAACGGGGGCGTAAGCCCATTTGATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
86881232 TGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
86881279 T
1 T
86881280 TCACTTCCTC
Statistics
Matches: 167, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
46 3 0.02
47 107 0.64
48 45 0.27
49 12 0.07
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
Found at i:86881167 original size:71 final size:71
Alignment explanation
Indices: 86881043--86881279 Score: 352
Period size: 71 Copynumber: 3.3 Consensus size: 71
86881033 GCTTTATCAT
* * * * *
86881043 ATAACTGGAGGCCT-AGCCTCTTTTAATCACTGGGGCAAAAGCCCTATTT-ATAACTGAGGCATA
1 ATAACTGG-GGCGTAAGCC-CTTTTGATAACTGGGGCATAAGCCCT-TTTGATAACTGGGGCATA
86881106 AGCCCTTTA
63 AGCCCTTTA
*
86881115 ATAACTGGGGCGTAAACCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
86881180 CCTTTA
66 CCTTTA
* *
86881186 ATAACGGGGGCGTAAGCCCATTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
86881251 CCTTTA
66 CCTTTA
*
86881257 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCGTAAGCCCTTTT
86881280 TCACTTCCTC
Statistics
Matches: 151, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
70 3 0.02
71 137 0.91
72 11 0.07
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (71 bp):
ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:86881351 original size:9 final size:9
Alignment explanation
Indices: 86881337--86881393 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
86881327 ATCTCGTGTG
86881337 CATATCATA
1 CATATCATA
*
86881346 CATATCATGTG
1 CATATCA--TA
86881357 CATATCATA
1 CATATCATA
* *
86881366 CATGTCATGTG
1 CATATCA--TA
86881377 CATATCATA
1 CATATCATA
86881386 CATATCAT
1 CATATCAT
86881394 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:86881356 original size:20 final size:20
Alignment explanation
Indices: 86881333--86881395 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
86881323 GAACATCTCG
86881333 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
86881353 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
86881373 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
86881393 TGT
1 TGT
86881396 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:86882642 original size:27 final size:26
Alignment explanation
Indices: 86882612--86882689 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
86882602 GGGCATATTC
86882612 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
*
86882639 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTACAGGGG-TATTACG
* *
86882666 GTCTTTTTACCTAATAGGGGTATT
1 GTCATTTTACCT-ACAGGGGTATT
86882690 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
26 4 0.09
27 36 0.84
28 3 0.07
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:86882793 original size:27 final size:26
Alignment explanation
Indices: 86882709--86882795 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
86882699 TCATCCTACA
* *
86882709 AGGGTGTTTTGGTAATTTTACAAATTG
1 AGGGTATTTT-GTAATTTTACAAATCG
* *
86882736 AGGGTATTTCTGTAATTTTACAAACCA
1 AGGGTATTT-TGTAATTTTACAAATCG
**
86882763 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTT-GTAATTTTACAAATCG
86882790 AGGGTA
1 AGGGTA
86882796 AAACAGTAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 48 0.96
28 1 0.02
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGTAATTTTACAAATCG
Found at i:86882803 original size:27 final size:27
Alignment explanation
Indices: 86882774--86883111 Score: 450
Period size: 27 Copynumber: 12.6 Consensus size: 27
86882764 GGGTATTTTA
* *
86882774 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
86882801 GTAATTATGTAAATCAAGGGTGAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86882828 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
86882855 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
86882882 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86882909 ATAATTATGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86882936 GTAATTATGTAAATTG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
86882962 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
86882989 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
86883016 GTAATT-TGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
86883042 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86883069 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
86883096 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
86883112 GGAGTACTTT
Statistics
Matches: 277, Mismatches: 28, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
26 52 0.19
27 222 0.80
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:86882984 original size:80 final size:83
Alignment explanation
Indices: 86882774--86883111 Score: 453
Period size: 80 Copynumber: 4.2 Consensus size: 83
86882764 GGGTATTTTA
* * * * *
86882774 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTGAAAC-AGTAATTCTAT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTAT
*
86882838 AAATC-GAGGGTAAAATG
66 AAATCTGAGGGTAAAACG
* * *
86882855 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTAT
86882919 AAATC-GAGGGTAAAACG
66 AAATCTGAGGGTAAAACG
* * * *
86882936 GTAATTATGTAAATTG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-TAGTAATTCTGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTAT
86882999 AAA-CTGAGGGTAAAACG
66 AAATCTGAGGGTAAAACG
* **
86883016 GTAATT-TGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG-GTAATTCTAT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTAT
*
86883079 -AACCTGAGGGTAAAACG
66 AAATCTGAGGGTAAAACG
86883096 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
86883112 GGAGTACTTT
Statistics
Matches: 230, Mismatches: 20, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
79 12 0.05
80 125 0.54
81 92 0.40
82 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (83 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTAT
AAATCTGAGGGTAAAACG
Found at i:86885972 original size:31 final size:31
Alignment explanation
Indices: 86885931--86885994 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
86885921 CCTTTTCATA
*
86885931 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
86885962 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
86885993 TT
1 TT
86885995 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:86886243 original size:23 final size:23
Alignment explanation
Indices: 86886187--86886419 Score: 312
Period size: 23 Copynumber: 10.0 Consensus size: 23
86886177 TGCTTTATCA
*
86886187 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
86886211 TAATAACTGGGGCAAAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
86886235 TATAACT-GGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
* *
86886257 AATAACTGGGGCGTAA-CCCTTT
1 TATAACTGGGGCATAAGCCCTTT
86886279 TGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
86886303 TGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
* *
86886327 AATAAC-GGGGCGTAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
86886349 GATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
86886372 TGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
86886396 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
86886419 T
1 T
86886420 TCACTTCCTC
Statistics
Matches: 188, Mismatches: 14, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
22 46 0.24
23 69 0.37
24 61 0.32
25 12 0.06
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:86886316 original size:92 final size:93
Alignment explanation
Indices: 86886188--86886419 Score: 353
Period size: 92 Copynumber: 2.5 Consensus size: 93
86886178 GCTTTATCAT
* * *
86886188 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTGGGCATAAGC
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTATAACGGGGCATAAGC
*
86886252 CCTTTAATAACTGGGGCGTAA-CCCTTTTG
64 CCTTTAATAACTGGGGCATAAGCCCTTTTG
* * *
86886281 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACGGGGCGTAAGCCC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTATAACGGGGCATAAGCCC
*
86886346 TTTGATAACTGGGGCATAAGCCCTTTTG
66 TTTAATAACTGGGGCATAAGCCCTTTTG
86886374 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
86886420 TCACTTCCTC
Statistics
Matches: 127, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
92 88 0.69
93 39 0.31
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (93 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTATAACGGGGCATAAGCCC
TTTAATAACTGGGGCATAAGCCCTTTTG
Found at i:86886351 original size:69 final size:70
Alignment explanation
Indices: 86886213--86886418 Score: 357
Period size: 69 Copynumber: 3.0 Consensus size: 70
86886203 GCCTCTTTTA
*
86886213 ATAACTGGGGCAAAAGCCCTTTT-ATAACT-GGGCATAAGCCCTTTAATAACTGGGGCGTAA-CC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCGTAAGCC
86886275 CTTTTG
66 C-TTTG
86886281 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAAC-GGGGCGTAAGCC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCGTAAGCC
86886345 CTTTG
66 CTTTG
*
86886350 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCGTAAGCC
86886415 CTTT
66 CTTT
86886419 TTCACTTCCT
Statistics
Matches: 132, Mismatches: 2, Indels: 6
0.94 0.01 0.04
Matches are distributed among these distances:
68 22 0.17
69 71 0.54
70 39 0.30
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (70 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCGTAAGCC
CTTTG
Found at i:86886491 original size:9 final size:9
Alignment explanation
Indices: 86886477--86886533 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
86886467 ATCTCGTGTG
86886477 CATATCATA
1 CATATCATA
*
86886486 CATATCATGTG
1 CATATCA--TA
86886497 CATATCATA
1 CATATCATA
* *
86886506 CATGTCATGTG
1 CATATCA--TA
86886517 CATATCATA
1 CATATCATA
86886526 CATATCAT
1 CATATCAT
86886534 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:86886496 original size:20 final size:20
Alignment explanation
Indices: 86886473--86886535 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
86886463 GAACATCTCG
86886473 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
86886493 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
86886513 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
86886533 TGT
1 TGT
86886536 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:86887785 original size:27 final size:27
Alignment explanation
Indices: 86887750--86887806 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
86887740 GGGCATATTC
*
86887750 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
86887777 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
86887804 GTC
1 GTC
86887807 TTTTACCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:86887930 original size:27 final size:26
Alignment explanation
Indices: 86887846--86887932 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
86887836 TCATCCTACA
* *
86887846 AGGGTGTTTTGGTAATTTTACAAATTG
1 AGGGTATTTT-GTAATTTTACAAATCG
* *
86887873 AGGGTATTTCTGTAATTTTACAAACCA
1 AGGGTATTT-TGTAATTTTACAAATCG
**
86887900 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTT-GTAATTTTACAAATCG
86887927 AGGGTA
1 AGGGTA
86887933 AAACAGTAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 48 0.96
28 1 0.02
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGTAATTTTACAAATCG
Found at i:86887940 original size:27 final size:27
Alignment explanation
Indices: 86887911--86888247 Score: 450
Period size: 27 Copynumber: 12.6 Consensus size: 27
86887901 GGGTATTTTA
* *
86887911 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
86887938 GTAATT-TGTAAATCAAGGGTGAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86887964 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
86887991 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
86888018 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86888045 ATAATTATGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86888072 GTAATTATGTAAATTG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
86888098 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
86888125 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
86888152 GTAATT-TGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
86888178 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86888205 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
86888232 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
86888248 GGAGTACTTT
Statistics
Matches: 277, Mismatches: 26, Indels: 14
0.87 0.08 0.04
Matches are distributed among these distances:
26 76 0.27
27 198 0.71
28 3 0.01
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:86887995 original size:80 final size:82
Alignment explanation
Indices: 86887911--86888247 Score: 456
Period size: 80 Copynumber: 4.2 Consensus size: 82
86887901 GGGTATTTTA
* * * *
86887911 GTAATTTTGTAAATCGAGGGTAAAACAGTAATT-TGTAAATCAAGGGTGAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
86887975 AATC-GAGGGTAAAATG
66 AATCTGAGGGTAAAACG
* * *
86887991 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTAT
86888055 AAATC-GAGGGTAAAACG
65 AAATCTGAGGGTAAAACG
* * * *
86888072 GTAATTATGTAAATTG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
86888136 AA-CTGAGGGTAAAACG
66 AATCTGAGGGTAAAACG
* ** *
86888152 GTAATT-TGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTAT-
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
86888215 AACCTGAGGGTAAAACG
66 AATCTGAGGGTAAAACG
86888232 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
86888248 GGAGTACTTT
Statistics
Matches: 230, Mismatches: 20, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
79 11 0.05
80 156 0.68
81 63 0.27
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (82 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
AATCTGAGGGTAAAACG
Found at i:86888030 original size:107 final size:106
Alignment explanation
Indices: 86887911--86888247 Score: 473
Period size: 107 Copynumber: 3.2 Consensus size: 106
86887901 GGGTATTTTA
* * * * *
86887911 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTTGTAAATCAAGGGTGAAACAGTAATTCTATAA
1 GTAATTCTGTAAATCGAGGGTAAAAC-GTAATTTGTAAATCGAGGGTAAAACGGTAATTATATAA
*
86887976 ATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
65 ATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
*
86888018 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAACGGTAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACG-TAATT-TGTAAATCGAGGGTAAAACGGTAATTATATA
* * **
86888083 AATTG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
64 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* *
86888125 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTTGTAAATCGAGGGTAAAACGGTAATTTTACA
1 GTAATTCTGTAAATC-GAGGGTAAAAC-GTAATTTGTAAATCGAGGGTAAAACGGTAATTATATA
*
86888189 AATCGAGGGTAAAACGGTAATTCTAT-AACCTGAGGGTAAAACG
64 AATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACG
86888232 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
86888248 GGAGTACTTT
Statistics
Matches: 204, Mismatches: 19, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
106 37 0.18
107 135 0.66
108 32 0.16
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (106 bp):
GTAATTCTGTAAATCGAGGGTAAAACGTAATTTGTAAATCGAGGGTAAAACGGTAATTATATAAA
TCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
Found at i:86888264 original size:54 final size:54
Alignment explanation
Indices: 86887911--86888247 Score: 450
Period size: 53 Copynumber: 6.3 Consensus size: 54
86887901 GGGTATTTTA
* * * * *
86887911 GTAATTTTGTAAATCGAGGGTAAAACAGTAATT-TGTAAATCAAGGGTGAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
86887964 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* *
86888018 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * **
86888072 GTAATTATGTAAATTG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
86888125 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATT-TGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** * *
86888178 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
86888232 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
86888248 GGAGTACTTT
Statistics
Matches: 247, Mismatches: 31, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
53 124 0.50
54 123 0.50
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:86891105 original size:31 final size:31
Alignment explanation
Indices: 86891064--86891127 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
86891054 CCTTTTCATA
*
86891064 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
86891095 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
86891126 TT
1 TT
86891128 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:86891372 original size:23 final size:23
Alignment explanation
Indices: 86891311--86891548 Score: 304
Period size: 23 Copynumber: 10.2 Consensus size: 23
86891301 AGCTTAGCTG
*
86891311 CTTTATATAACTGGAGGCCT-AGCC
1 CTTT-TATAACTGG-GGCATAAGCC
*
86891335 TCTTTTAATAACTGGGGCAAAAGCC
1 -CTTTT-ATAACTGGGGCATAAGCC
*
86891360 CTTTTATAACTGGGGTATAAGCC
1 CTTTTATAACTGGGGCATAAGCC
* *
86891383 C-TATATAACTGGGGCGTAAGCC
1 CTTTTATAACTGGGGCATAAGCC
86891405 CTTTTGATAACTGGGGCATAAGCC
1 CTTTT-ATAACTGGGGCATAAGCC
*
86891429 CTTTGATAACTGGGGCATAAGCC
1 CTTTTATAACTGGGGCATAAGCC
* *
86891452 CTTTAATAACTGGGGCGTAAGCC
1 CTTTTATAACTGGGGCATAAGCC
86891475 CTTTTGATAACTGGGGCATAAG-C
1 CTTTT-ATAACTGGGGCATAAGCC
86891498 CTTTTGATAACT-GGGCATAAGCC
1 CTTTT-ATAACTGGGGCATAAGCC
*
86891521 CTTTAATAACTGGGGCATAAGCC
1 CTTTTATAACTGGGGCATAAGCC
86891544 CTTTT
1 CTTTT
86891549 TCACTTCCTC
Statistics
Matches: 190, Mismatches: 16, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
22 34 0.18
23 95 0.50
24 45 0.24
25 16 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (23 bp):
CTTTTATAACTGGGGCATAAGCC
Found at i:86891491 original size:70 final size:70
Alignment explanation
Indices: 86891311--86891548 Score: 356
Period size: 69 Copynumber: 3.4 Consensus size: 70
86891301 AGCTTAGCTG
* * * *
86891311 CTTTATATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTGGGG
1 CTTTA-ATAACTGG-GGCGTAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTGATAACTGGGG
*
86891375 TATAAGCC
63 CATAAGCC
*
86891383 CTAT-ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTGATAACTGGGGCAT
1 CTTTAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTGATAACTGGGGCAT
86891447 AAGCC
66 AAGCC
*
86891452 CTTTAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCTTTTGATAACT-GGGCAT
1 CTTTAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTGATAACTGGGGCAT
86891516 AAGCC
66 AAGCC
*
86891521 CTTTAATAACTGGGGCATAAGCCCTTTT
1 CTTTAATAACTGGGGCGTAAGCCCTTTT
86891549 TCACTTCCTC
Statistics
Matches: 155, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
69 88 0.57
70 64 0.41
72 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (70 bp):
CTTTAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTGATAACTGGGGCAT
AAGCC
Found at i:86891620 original size:9 final size:9
Alignment explanation
Indices: 86891606--86891662 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
86891596 ATCTCGTGTG
86891606 CATATCATA
1 CATATCATA
*
86891615 CATATCATGTG
1 CATATCA--TA
86891626 CATATCATA
1 CATATCATA
* *
86891635 CATGTCATGTG
1 CATATCA--TA
86891646 CATATCATA
1 CATATCATA
86891655 CATATCAT
1 CATATCAT
86891663 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:86891625 original size:20 final size:20
Alignment explanation
Indices: 86891602--86891664 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
86891592 GAACATCTCG
86891602 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
86891622 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
86891642 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
86891662 TGT
1 TGT
86891665 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:86892932 original size:26 final size:27
Alignment explanation
Indices: 86892880--86892935 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
86892870 GGGCATATTC
*
86892880 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCATACAGGGGTATTACG
*
86892907 GTCACTTTACCCTAC-GGGGCT-TTACG
1 GTCACTTTACCATACAGGGG-TATTACG
86892933 GTC
1 GTC
86892936 TTTTTACCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGTATTACG
Found at i:86892941 original size:26 final size:27
Alignment explanation
Indices: 86892880--86892943 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
86892870 GGGCATATTC
86892880 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
86892907 GTCACTTTACCCTAC-GGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
86892933 GTCTTTTTACC
1 GTCATTTTACC
86892944 TAATAGGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 18 0.56
27 14 0.44
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:86893059 original size:27 final size:26
Alignment explanation
Indices: 86892975--86893061 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
86892965 TCATCCTACA
* *
86892975 AGGGTGTTTTGGTAATTTTACAAATTG
1 AGGGTATTTT-GTAATTTTACAAATCG
* *
86893002 AGGGTATTTCTGTAATTTTACAAACCA
1 AGGGTATTT-TGTAATTTTACAAATCG
**
86893029 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTT-GTAATTTTACAAATCG
86893056 AGGGTA
1 AGGGTA
86893062 AAACAGTAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 48 0.96
28 1 0.02
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGTAATTTTACAAATCG
Found at i:86893069 original size:27 final size:27
Alignment explanation
Indices: 86893040--86893378 Score: 450
Period size: 27 Copynumber: 12.6 Consensus size: 27
86893030 GGGTATTTTA
* *
86893040 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
86893067 GTAATTATGTAAATCAAGGGTGAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86893094 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
86893121 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
86893148 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86893175 ATAATTATGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86893202 GTAATTATGTAAATTG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
86893228 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
86893255 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
86893282 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
86893309 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86893336 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
86893363 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
86893379 GGAGTACTTT
Statistics
Matches: 278, Mismatches: 29, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
26 28 0.10
27 246 0.88
28 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:86899157 original size:41 final size:41
Alignment explanation
Indices: 86899100--86899178 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
86899090 GGAAGTCTTT
*
86899100 GGCACATCTGACTATTTAACTTGTAACTGGTAATATCCGGA
1 GGCACATCCGACTATTTAACTTGTAACTGGTAATATCCGGA
*
86899141 GGCACATCCGACTATTTAACTTGTAATTGGTAATATCC
1 GGCACATCCGACTATTTAACTTGTAACTGGTAATATCC
86899179 AGACCTTAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (41 bp):
GGCACATCCGACTATTTAACTTGTAACTGGTAATATCCGGA
Found at i:86900228 original size:38 final size:38
Alignment explanation
Indices: 86900177--86900291 Score: 196
Period size: 38 Copynumber: 3.0 Consensus size: 38
86900167 GAGGGTCTTC
86900177 CCCTAGAAGCTGCGCCACTCGATCTTGGACTCTAAAAT
1 CCCTAGAAGCTGCGCCACTCGATCTTGGACTCTAAAAT
*
86900215 CCCTAGAAGCTGCGCCACTCGGTCTTGGACTCTAAAAT
1 CCCTAGAAGCTGCGCCACTCGATCTTGGACTCTAAAAT
*
86900253 CCCTAGAAGCTACGCCACTC-AGTCTTGGACTCTAAAAT
1 CCCTAGAAGCTGCGCCACTCGA-TCTTGGACTCTAAAAT
86900291 C
1 C
86900292 TTTCTTTTTC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
38 73 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.23
Consensus pattern (38 bp):
CCCTAGAAGCTGCGCCACTCGATCTTGGACTCTAAAAT
Found at i:86903360 original size:19 final size:19
Alignment explanation
Indices: 86903324--86903362 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
86903314 TTTTCACCAT
* *
86903324 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
86903343 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
86903362 A
1 A
86903363 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:86903874 original size:28 final size:29
Alignment explanation
Indices: 86903826--86903888 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
86903816 GTGATAGAGT
*
86903826 CACCAGATACAGATATTTTGTGGCA-ATGC
1 CACCAGATACAGATAATTTGTGGCATA-GC
86903855 CACCAGA-ACAGATAATTTGTGGCATAGC
1 CACCAGATACAGATAATTTGTGGCATAGC
86903883 CACCAG
1 CACCAG
86903889 GACGCTTCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 24 0.75
29 8 0.25
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (29 bp):
CACCAGATACAGATAATTTGTGGCATAGC
Found at i:86904041 original size:28 final size:27
Alignment explanation
Indices: 86903997--86904058 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 27
86903987 TTAACCCTAG
*
86903997 GGGTATTAAGGTCATTTAGCATACATAA
1 GGGTA-TAAGGTAATTTAGCATACATAA
* *
86904025 GGGTATAATGGTAATTTTGCATACATAG
1 GGGTATAA-GGTAATTTAGCATACATAA
86904053 GGGTAT
1 GGGTAT
86904059 TCTAGTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 3 0.10
28 27 0.90
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (27 bp):
GGGTATAAGGTAATTTAGCATACATAA
Found at i:86923159 original size:2 final size:2
Alignment explanation
Indices: 86923152--86923182 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
86923142 TATTCTATTC
86923152 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86923183 TTGTACATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86926298 original size:39 final size:39
Alignment explanation
Indices: 86926235--86926316 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
86926225 CCAACATAAT
*
86926235 TGCCTTCGGGACTTTGCCCGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTTGCCCAGATATAACACCAGCACGAA
*
86926274 TGCCTTTGGGA-TTTAGCCCAGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTT-GCCCAGATATAACACCAGCACGAA
86926313 TGCC
1 TGCC
86926317 ATCAGGCCTG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
38 3 0.08
39 37 0.93
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (39 bp):
TGCCTTCGGGACTTTGCCCAGATATAACACCAGCACGAA
Found at i:86928431 original size:45 final size:44
Alignment explanation
Indices: 86928342--86928432 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 44
86928332 GAATTATTTA
* * *
86928342 ATCTGAACTCATTGAGTTGTCTCTGAGTTCATGATATATGTGAC
1 ATCTGAACCCATTGAGTTGTCTCTGAGTTCATGATAGATATGAC
* ** *
86928386 ATCTGAACCCATTGAGTTGTGGTCTGAGTTTGTGATAGGTATGAC
1 ATCTGAACCCATTGAGTTGT-CTCTGAGTTCATGATAGATATGAC
86928431 AT
1 AT
86928433 ATGTTTTGGC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 19 0.49
45 20 0.51
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.37
Consensus pattern (44 bp):
ATCTGAACCCATTGAGTTGTCTCTGAGTTCATGATAGATATGAC
Found at i:86930700 original size:24 final size:24
Alignment explanation
Indices: 86930649--86930814 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
86930639 GCTTTATCAT
* *
86930649 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
86930674 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
86930698 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
86930721 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
86930745 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
86930769 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
86930792 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86930815 TACTTCCTCC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.35
24 75 0.56
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:86930728 original size:47 final size:48
Alignment explanation
Indices: 86930649--86930814 Score: 248
Period size: 47 Copynumber: 3.5 Consensus size: 48
86930639 GCTTTATCAT
* * **
86930649 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTG
86930698 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
*
86930745 ATAACTGGGGCATAAGCCCTTTTGATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
86930792 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86930815 TACTTCCTCC
Statistics
Matches: 111, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
47 84 0.76
48 15 0.14
49 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
Found at i:86930749 original size:71 final size:70
Alignment explanation
Indices: 86930648--86930814 Score: 246
Period size: 71 Copynumber: 2.3 Consensus size: 70
86930638 TGCTTTATCA
*
86930648 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACT-GGGCATA
86930712 AGCCCTTT
63 AGCCCTTT
* * **
86930720 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGCATAAGC
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGCATAAGC
86930785 CCTTT
66 CCTTT
86930790 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
86930815 TACTTCCTCC
Statistics
Matches: 88, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
70 16 0.18
71 59 0.67
72 13 0.15
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (70 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGCATAAGC
CCTTT
Found at i:86930889 original size:20 final size:20
Alignment explanation
Indices: 86930864--86930923 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
86930854 TATGATTACC
86930864 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
86930884 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
86930904 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
86930924 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:86930894 original size:11 final size:11
Alignment explanation
Indices: 86930864--86930918 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
86930854 TATGATTACC
86930864 TCATGTGCATA
1 TCATGTGCATA
*
86930875 TCA--TACATA
1 TCATGTGCATA
86930884 TCATGTGCATA
1 TCATGTGCATA
* *
86930895 TCA--TACATT
1 TCATGTGCATA
86930904 TCATGTGCATA
1 TCATGTGCATA
86930915 TCAT
1 TCAT
86930919 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:86930998 original size:25 final size:25
Alignment explanation
Indices: 86930966--86931013 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86930956 ATACATAAAC
* * *
86930966 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
86930991 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
86931014 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:86939722 original size:66 final size:62
Alignment explanation
Indices: 86939644--86939824 Score: 199
Period size: 64 Copynumber: 2.8 Consensus size: 62
86939634 TAGTACCACT
* *
86939644 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGG-G---GTCACTCGGAAT
86939706 CA
61 CA
86939708 CGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACAT-GGGTCACTCGGAAT
1 --CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGGGTCACTCGGAAT
86939772 CA
61 CA
86939774 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGG
86939825 ATACATCTCG
Statistics
Matches: 106, Mismatches: 2, Indels: 15
0.86 0.02 0.12
Matches are distributed among these distances:
64 48 0.45
65 2 0.02
66 26 0.25
67 6 0.06
68 1 0.01
69 2 0.02
70 1 0.01
71 20 0.19
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.33
Consensus pattern (62 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGGGTCACTCGGAATCA
Found at i:86939797 original size:64 final size:65
Alignment explanation
Indices: 86939667--86939857 Score: 251
Period size: 64 Copynumber: 2.8 Consensus size: 65
86939657 CGATTTGTCT
*
86939667 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACAT-G-G---GTCACTCGGAATCAC-CATGCGACCTAGCTACATTTAT
86939732 CTTTCA
60 CTTTCA
86939738 CGTAGCTCTCTTGTCTACATGGGTCACTCGGAATCA-CATGCGACCTAGCTACATTTATCTTTCA
1 CGTAGCTCTCTTGTCTACATGGGTCACTCGGAATCACCATGCGACCTAGCTACATTTATCTTTCA
* *
86939802 CGTAGCTCTCTTGTCTACATGGGATACATCTC-GTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGG-T-CA-CTCGGAATCAC-CATGCGACCTAGCTAC
86939858 TACAGGGTGT
Statistics
Matches: 112, Mismatches: 3, Indels: 13
0.88 0.02 0.10
Matches are distributed among these distances:
64 51 0.46
65 1 0.01
66 20 0.18
67 3 0.03
68 15 0.13
69 1 0.01
70 1 0.01
71 20 0.18
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.32
Consensus pattern (65 bp):
CGTAGCTCTCTTGTCTACATGGGTCACTCGGAATCACCATGCGACCTAGCTACATTTATCTTTCA
Found at i:86956801 original size:14 final size:14
Alignment explanation
Indices: 86956782--86956810 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86956772 CGCTGAGGTA
86956782 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86956796 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86956810 T
1 T
86956811 CATCAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:86957062 original size:163 final size:162
Alignment explanation
Indices: 86956723--86958060 Score: 1770
Period size: 163 Copynumber: 8.5 Consensus size: 162
86956713 CAAATTCTAC
*
86956723 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACGCGCTGAGGTATTTTCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTATTTTCA
*
86956788 ATTTCTGTTTTTCAATTTCTGTTCATCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 ATTTCTGTTTTTCAATTTCTGTTCGTC----AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
86956853 CTCAGGACACGTTGAGGTAATTTTAATTTCTGTTCAT
127 CTCAAGACACGTTGAGGTAATTTTAATTTCTGTT-AT
* * *
86956890 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTCCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTATTTTCA
*
86956955 ATTTCTGTTTTTCAATTTTTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 ATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
86957020 GGACACGTTGAGGTAATTTTAATTTCTGTTCAT
131 AGACACGTTGAGGTAATTTTAATTTCTGTT-AT
*
86957053 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACACGCTGAGGTATTTTCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTATTTTCA
86957118 ATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 ATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* *
86957183 AGACACGTTGAGGTAATTTCAATTTCTGTTTT
131 AGACACGTTGAGGTAATTTTAATTTCTGTTAT
* *
86957215 C--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGTTGAGGTAATTTC
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGCTCACACGCTGAGGTATTTTC
**
86957275 AATTTC------T--A----T-TT--TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
65 AATTTCTGTTTTTCAATTTCTGTTCGTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
86957325 CAAGACACGTTGAGGT-ATTTTCAATTTCTGTTTT
129 CAAGACACGTTGAGGTAATTTT-AATTTCTGTTAT
* * * * *
86957359 CAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTCTCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTATTTTCA
* ***
86957424 ATTTCTGTCTTTCAA---------AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 ATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
86957480 GGACACGTTGAGGTAATTTTAATTTCTGTTCAT
131 AGACACGTTGAGGTAATTTTAATTTCTGTT-AT
* * * * *
86957513 CAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTTAGCTCACGCCCTGAGGTATTTTCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTATTTTCA
*
86957578 ATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCA
66 ATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
86957643 GGACACGTTGAGGTAATTTTAATTTCTGTTCAT
131 AGACACGTTGAGGTAATTTTAATTTCTGTT-AT
*
86957676 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACACGCTGAGGTATTTTCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTATTTTCA
86957741 ATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 ATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* *
86957806 AGACACGTTGAGGTAATTTCAATTTCTGTTTT
131 AGACACGTTGAGGTAATTTTAATTTCTGTTAT
* *
86957838 C--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGTTGAGGTAATTTC
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGCTCACACGCTGAGGTATTTTC
* **
86957898 AATTTCTG-TTTTC-A------------AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
65 AATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
86957949 AAGACACGTTGAGGT-ATTTTCAATTTCTGTTTT
130 AAGACACGTTGAGGTAATTTT-AATTTCTGTTAT
* * * * *
86957982 C-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTCTCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTATTTTCA
*
86958046 ATTTCTGTCTTTCAA
66 ATTTCTGTTTTTCAA
86958061 AAAAAAAAAA
Statistics
Matches: 1070, Mismatches: 65, Indels: 90
0.87 0.05 0.07
Matches are distributed among these distances:
143 14 0.01
144 122 0.11
145 40 0.04
146 38 0.04
147 22 0.02
148 24 0.02
149 1 0.00
150 1 0.00
152 1 0.00
153 55 0.05
154 80 0.07
156 2 0.00
157 5 0.00
158 46 0.04
160 74 0.07
161 4 0.00
162 4 0.00
163 449 0.42
167 88 0.08
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (162 bp):
CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTATTTTCA
ATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
AGACACGTTGAGGTAATTTTAATTTCTGTTAT
Found at i:86957131 original size:14 final size:14
Alignment explanation
Indices: 86957112--86957140 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86957102 CGCTGAGGTA
86957112 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86957126 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86957140 T
1 T
86957141 CGTCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:86957244 original size:72 final size:73
Alignment explanation
Indices: 86957127--86958100 Score: 1036
Period size: 72 Copynumber: 12.7 Consensus size: 73
86957117 AATTTCTGTT
*
86957127 TTTCAATTTCTGTTCGTC--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTCAATTTCTGTT-TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
86957190 TTGAGGTAA
65 TTGAGGTAA
86957199 TTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
86957263 TGAGGTAA
66 TGAGGTAA
* * **
86957271 TTTCAATTTCTATTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
*
86957335 TGAGGTAT
66 TGAGGTAA
* *
86957343 TTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCAC
1 TTTCAATTTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---AC
* *
86957407 ATGCTGAGGT-A
62 ACGTTGAGGTAA
*
86957418 TTCTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TT-TCAATTTCTGT-TTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
86957483 CACGTTGAGGTAA
61 CACGTTGAGGTAA
* * * * * *
86957496 TTTTAATTTCTGTTCATCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCT-TAGCTCA
1 TTTCAATTTCTGTT-TTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACA
* *
86957560 CGCCCTGAGGTAT
63 CG--TTGAGGTAA
*
86957573 TTTCAATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGAGAGAGGTGAGTTGAG
1 TTTCAATTTCTG-TTTTCAA------------AAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
86957638 CCTCAGGACACGTTGAGGTAA
53 CCTCAAGACACGTTGAGGTAA
* * *
86957659 TTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTC-AGCTCA
1 TTTCAATTTCTGTT-TTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---A
* *
86957723 CACGCTGAGGTAT
61 CACGTTGAGGTAA
86957736 TTTCAATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTCAATTTCTG-TTTTCAA------------AAAATCAACTCATATTGCGAGAGGTGAGTTGAG
86957801 CCTCAAGACACGTTGAGGTAA
53 CCTCAAGACACGTTGAGGTAA
86957822 TTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
86957886 TGAGGTAA
66 TGAGGTAA
* **
86957894 TTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
*
86957958 TGAGGTAT
66 TGAGGTAA
* *
86957966 TTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACA
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACA
* *
86958030 TGCTGAGGT-A
63 CGTTGAGGTAA
*
86958040 TTCTCAATTTCTGTCTTTCAAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGC
1 TT-TCAATTTCTGT-TTTC------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
86958101 TTCAGATCAC
Statistics
Matches: 778, Mismatches: 63, Indels: 112
0.82 0.07 0.12
Matches are distributed among these distances:
71 2 0.00
72 291 0.37
73 35 0.04
74 38 0.05
75 99 0.13
76 30 0.04
77 71 0.09
78 7 0.01
79 39 0.05
80 2 0.00
82 34 0.04
84 1 0.00
85 7 0.01
86 44 0.06
87 2 0.00
88 73 0.09
89 3 0.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (73 bp):
TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
TGAGGTAA
Found at i:86957591 original size:14 final size:14
Alignment explanation
Indices: 86957572--86957600 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86957562 CCCTGAGGTA
86957572 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86957586 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86957600 T
1 T
86957601 CGTCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:86957754 original size:14 final size:14
Alignment explanation
Indices: 86957735--86957763 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86957725 CGCTGAGGTA
86957735 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86957749 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86957763 T
1 T
86957764 CGTCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:86958066 original size:623 final size:624
Alignment explanation
Indices: 86956723--86958105 Score: 2482
Period size: 623 Copynumber: 2.2 Consensus size: 624
86956713 CAAATTCTAC
* * * ** *
86956723 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACGCGCTGAGGTATTTTCA
1 CAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTCTCA
*
86956788 ATTTCTGTTTTTCAATTTCTGTTCATCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 ATTTCTG----------TCT-TTCA-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
86956853 CTCAGGACACGTTGAGGTAATTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGG
119 CTCAGGACACGTTGAGGTAATTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGG
* *
86956918 TGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTCCAATTTCTGTTTTTCAATTTTTGTTCGTCA
184 TGAGTTGAGTCTCAGCTCACGCCCTGAGGTATTTCCAATTTCTGTTTTTCAATTTCTGTTCGTCA
*
86956983 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCTG
249 AAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCTG
86957048 TTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACACGCTGAGGTAT
314 TTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACACGCTGAGGTAT
86957113 TTTCAATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
379 TTTCAATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
86957178 CCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTG
444 CCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTG
86957243 AGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCG
509 AGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCG
86957308 AGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTT
574 AGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTT
86957359 CAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTCTCA
1 CAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTCTCA
86957424 ATTTCTGTCTTTC-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGT
66 ATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGT
*
86957488 TGAGGTAATTTTAATTTCTGTTCATCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCT
131 TGAGGTAATTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCT
* *
86957553 TAGCTCACGCCCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCAT
196 CAGCTCACGCCCTGAGGTATTTCCAATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCAT
86957618 ATTGAGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCTGTTCATCAAAAAA
261 ATTGAGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCTGTTCATCAAAAAA
86957683 ATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACACGCTGAGGTATTTTCAATTTCTG
326 ATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACACGCTGAGGTATTTTCAATTTCTG
86957748 TTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
391 TTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
86957813 TTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
456 TTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
86957878 AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
521 AGACACGTTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
86957943 AGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTT
586 AGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTT
86957982 C-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTCTCA
1 CAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTCTCA
* *
86958046 ATTTCTGTCTTTCAAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCTTCAG
66 ATTTCTGTCTTTC--AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
86958106 ATCACACACT
Statistics
Matches: 728, Mismatches: 16, Indels: 17
0.96 0.02 0.02
Matches are distributed among these distances:
622 76 0.10
623 538 0.74
625 45 0.06
626 3 0.00
636 66 0.09
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (624 bp):
CAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTCTCA
ATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGT
TGAGGTAATTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCT
CAGCTCACGCCCTGAGGTATTTCCAATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCAT
ATTGAGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCTGTTCATCAAAAAA
ATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACACGCTGAGGTATTTTCAATTTCTG
TTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
TTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
AGACACGTTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
AGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTT
Found at i:86958861 original size:35 final size:35
Alignment explanation
Indices: 86958822--86958892 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
86958812 CACTTGCCTC
*
86958822 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA
*
86958857 TTCCCATTCTCCCATGCTGTCTGCCACCAACACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA
86958892 T
1 T
86958893 CACACACTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.18, C:0.46, G:0.10, T:0.25
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA
Found at i:86959285 original size:24 final size:25
Alignment explanation
Indices: 86959258--86959315 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
86959248 TTTAACCTAT
*
86959258 ATATATATTAAAACATA-AAAAAAA
1 ATATATATAAAAACATACAAAAAAA
* * *
86959282 ATATACAAAAAAATATACAAAAAAA
1 ATATATATAAAAACATACAAAAAAA
86959307 ATATATATA
1 ATATATATA
86959316 TTTACCTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 13 0.48
25 14 0.52
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (25 bp):
ATATATATAAAAACATACAAAAAAA
Found at i:86959293 original size:13 final size:13
Alignment explanation
Indices: 86959275--86959311 Score: 67
Period size: 12 Copynumber: 2.9 Consensus size: 13
86959265 TTAAAACATA
86959275 AAAAAAAATATAC
1 AAAAAAAATATAC
86959288 -AAAAAAATATAC
1 AAAAAAAATATAC
86959300 AAAAAAAATATA
1 AAAAAAAATATA
86959312 TATATTTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAAAAAATATAC
Found at i:86959421 original size:11 final size:11
Alignment explanation
Indices: 86959388--86959422 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
86959378 CGGATTCCCC
86959388 TCCCT-TCTCT
1 TCCCTCTCTCT
86959398 CTCCCTCTCTCT
1 -TCCCTCTCTCT
86959410 TCCCTCTCTCT
1 TCCCTCTCTCT
86959421 TC
1 TC
86959423 TTTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 18 0.78
12 5 0.22
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
TCCCTCTCTCT
Found at i:86959687 original size:21 final size:18
Alignment explanation
Indices: 86959646--86959739 Score: 63
Period size: 18 Copynumber: 5.3 Consensus size: 18
86959636 ATTTGGCCCC
86959646 ATATATAATATTATGTAT
1 ATATATAATATTATGTAT
*
86959664 ATATTTAATATTATCAGT-T
1 ATATATAATATTAT--GTAT
*
86959683 ATATATACTA-TATG-AT
1 ATATATAATATTATGTAT
* * * *
86959699 TTCTAATACTATTATTTAT
1 ATAT-ATAATATTATGTAT
*
86959718 ATATAT-ATA-TATATAT
1 ATATATAATATTATGTAT
86959734 ATATAT
1 ATATAT
86959740 TTTCTTAGTA
Statistics
Matches: 60, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
16 16 0.27
17 8 0.13
18 21 0.35
19 13 0.22
20 2 0.03
ACGTcount: A:0.41, C:0.04, G:0.03, T:0.51
Consensus pattern (18 bp):
ATATATAATATTATGTAT
Found at i:86959722 original size:2 final size:2
Alignment explanation
Indices: 86959715--86959739 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
86959705 TACTATTATT
86959715 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
86959740 TTTCTTAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86963532 original size:20 final size:20
Alignment explanation
Indices: 86963493--86963532 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
86963483 TTTGATTTAA
*
86963493 AATTTAAGAAAAACATAATT
1 AATTTAAGAAAAAAATAATT
86963513 AATTT-AGAAAAAAATGAATT
1 AATTTAAGAAAAAAAT-AATT
86963533 TTTTTAGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (20 bp):
AATTTAAGAAAAAAATAATT
Found at i:86971292 original size:42 final size:43
Alignment explanation
Indices: 86971182--86971354 Score: 195
Period size: 43 Copynumber: 4.0 Consensus size: 43
86971172 ACAAAAGTCA
* * * *
86971182 CTATAGAACATGACCTTTAGCGGTGATTTTCTAATAAACGCCG
1 CTATAGAACATGACCTTTAGCGGCGCTTTTCTTACAAACGCCG
* *
86971225 CTATAGAATATGACCTTTAGCGGCGCTTTTCTTACAAACACCG
1 CTATAGAACATGACCTTTAGCGGCGCTTTTCTTACAAACGCCG
* * * *
86971268 CTATAG-ACATGACCTTTAGTGGCGCTTTTCCTACAAATGTCG
1 CTATAGAACATGACCTTTAGCGGCGCTTTTCTTACAAACGCCG
* * ** * *
86971310 CTATATAACATGACCTTTAGCAGCATTTTTCTCAAAAACGCCG
1 CTATAGAACATGACCTTTAGCGGCGCTTTTCTTACAAACGCCG
86971353 CT
1 CT
86971355 GAAGACCATA
Statistics
Matches: 107, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
42 35 0.33
43 72 0.67
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (43 bp):
CTATAGAACATGACCTTTAGCGGCGCTTTTCTTACAAACGCCG
Found at i:86971340 original size:85 final size:86
Alignment explanation
Indices: 86971182--86971341 Score: 198
Period size: 85 Copynumber: 1.9 Consensus size: 86
86971172 ACAAAAGTCA
* * * *
86971182 CTATAGAACATGACCTTTAGCGGTGATTTTCTAATAAACGCCGCTATAGAATATGACCTTTAGCG
1 CTATAGAACATGACCTTTAGCGGCGATTTTCTAACAAACGCCGCTATAGAACATGACCTTTAGCA
*
86971247 GCGCTTTTCTTACAAACACCG
66 GCACTTTTCTTACAAACACCG
* * * * *
86971268 CTATAG-ACATGACCTTTAGTGGCGCTTTTCCT-ACAAATGTCGCTATATAACATGACCTTTAGC
1 CTATAGAACATGACCTTTAGCGGCGATTTT-CTAACAAACGCCGCTATAGAACATGACCTTTAGC
*
86971331 AGCATTTTTCT
65 AGCACTTTTCT
86971342 CAAAAACGCC
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 54 0.87
86 8 0.13
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (86 bp):
CTATAGAACATGACCTTTAGCGGCGATTTTCTAACAAACGCCGCTATAGAACATGACCTTTAGCA
GCACTTTTCTTACAAACACCG
Found at i:86971354 original size:85 final size:86
Alignment explanation
Indices: 86971140--86971354 Score: 197
Period size: 85 Copynumber: 2.5 Consensus size: 86
86971130 AAAAATATCC
* * * * *
86971140 CTATATAACATGACCTTTAG-TG-ATCTTTT-ACAACAAAAGTCACTATAGAACATGACCTTTAG
1 CTATATAACATGACCTTTAGCAGCAT-TTTTCTCAA-AAACGCCGCTATAGAACATGACCTTTAG
* *
86971202 CGGTGATTTTCTAATAAACGCCG
64 CGGCGATTTTCTAACAAACGCCG
* * * ** * * * *
86971225 CTATAGAATATGACCTTTAGCGGCGCTTTTCTTACAAACACCGCTATAG-ACATGACCTTTAGTG
1 CTATATAACATGACCTTTAGCAGCATTTTTCTCAAAAACGCCGCTATAGAACATGACCTTTAGCG
* * *
86971289 GCGCTTTTCCT-ACAAATGTCG
66 GCGATTTT-CTAACAAACGCCG
86971310 CTATATAACATGACCTTTAGCAGCATTTTTCTCAAAAACGCCGCT
1 CTATATAACATGACCTTTAGCAGCATTTTTCTCAAAAACGCCGCT
86971355 GAAGACCATA
Statistics
Matches: 100, Mismatches: 26, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
85 82 0.82
86 17 0.17
87 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (86 bp):
CTATATAACATGACCTTTAGCAGCATTTTTCTCAAAAACGCCGCTATAGAACATGACCTTTAGCG
GCGATTTTCTAACAAACGCCG
Found at i:86973824 original size:1 final size:1
Alignment explanation
Indices: 86973788--86973812 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
86973778 AGCTCAATGC
86973788 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
86973813 GAGGAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:86978796 original size:27 final size:27
Alignment explanation
Indices: 86978760--86978871 Score: 156
Period size: 27 Copynumber: 4.1 Consensus size: 27
86978750 AGCATGGCTG
* *
86978760 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
86978786 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGA-ACAGATATAT-GTGGCAGAGCCA
86978814 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* *
86978841 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
86978868 CCAG
1 CCAG
86978872 GACGCTTCCT
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
26 5 0.06
27 57 0.72
28 17 0.22
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:86978819 original size:54 final size:54
Alignment explanation
Indices: 86978760--86978871 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
86978750 AGCATGGCTG
*
86978760 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
86978814 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
86978868 CCAG
1 CCAG
86978872 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:86980782 original size:40 final size:40
Alignment explanation
Indices: 86980726--86980933 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
86980716 TCAATGATAC
* * *
86980726 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* * *
86980766 TCGGGCTAAGACCCGAAGGCGTTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
86980806 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
86980846 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
86980886 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
86980926 CC-GGCTAA
1 CCGGGCTAA
86980934 ATTCCGAAGA
Statistics
Matches: 146, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 5 0.03
40 139 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:86980859 original size:80 final size:80
Alignment explanation
Indices: 86980722--86980933 Score: 311
Period size: 80 Copynumber: 2.7 Consensus size: 80
86980712 CATTTCAATG
* * * *
86980722 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATTCGGGCTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
*
86980786 GTTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
86980802 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
86980867 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
86980882 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
86980934 ATTCCGAAGA
Statistics
Matches: 119, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
79 6 0.05
80 111 0.93
81 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:86983859 original size:26 final size:26
Alignment explanation
Indices: 86983830--86983879 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
86983820 TGGAACATTT
86983830 ACCTATGCCAACATTCACAGAATTAA
1 ACCTATGCCAACATTCACAGAATTAA
86983856 ACCTATGCCAACATTCACAGAATT
1 ACCTATGCCAACATTCACAGAATT
86983880 CCCAAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.28, G:0.08, T:0.24
Consensus pattern (26 bp):
ACCTATGCCAACATTCACAGAATTAA
Found at i:86989027 original size:27 final size:27
Alignment explanation
Indices: 86988997--86989085 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
86988987 CGTAAACAGA
*
86988997 TGATTGGCAAACTGTATCACGAATAGG
1 TGATTGGCAGACTGTATCACGAATAGG
* * * * *
86989024 TGATTAGCAGATTGTTTCGCAAATAGG
1 TGATTGGCAGACTGTATCACGAATAGG
* * *
86989051 TGACTGACAGACTTTATCACGAATAGG
1 TGATTGGCAGACTGTATCACGAATAGG
*
86989078 TAATTGGC
1 TGATTGGC
86989086 GGGCTATATC
Statistics
Matches: 45, Mismatches: 17, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (27 bp):
TGATTGGCAGACTGTATCACGAATAGG
Found at i:86996612 original size:66 final size:67
Alignment explanation
Indices: 86996506--86996643 Score: 224
Period size: 66 Copynumber: 2.1 Consensus size: 67
86996496 CATTGCTATC
* * * *
86996506 AACAAGAAACTGTGATGGAACACGAATAGCGCCTAAAAC-AAACCTAGCAAGTTACAGCCTTCAA
1 AACAAGAAACTATGACGGAACACGAATAGCACCTAAAACAAAACCTAGCAAGTTACAACCTTCAA
86996570 GA
66 GA
*
86996572 AACAAGAAACTATGACGGAACACTAATAGCACCTAAAACAAAACCTAGCAAGTTACAACCTTCAA
1 AACAAGAAACTATGACGGAACACGAATAGCACCTAAAACAAAACCTAGCAAGTTACAACCTTCAA
86996637 GA
66 GA
86996639 AACAA
1 AACAA
86996644 CATTACCATC
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
66 35 0.53
67 31 0.47
ACGTcount: A:0.48, C:0.23, G:0.14, T:0.14
Consensus pattern (67 bp):
AACAAGAAACTATGACGGAACACGAATAGCACCTAAAACAAAACCTAGCAAGTTACAACCTTCAA
GA
Found at i:86998087 original size:6 final size:6
Alignment explanation
Indices: 86998076--86998107 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
86998066 TTTAATTTTT
86998076 TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG TT
1 TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG TT
86998108 TTAGGGGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.16, C:0.00, G:0.47, T:0.38
Consensus pattern (6 bp):
TTAGGG
Found at i:87008767 original size:8 final size:9
Alignment explanation
Indices: 87008745--87008769 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
87008735 GCAACGATCA
87008745 CAAAAACAT
1 CAAAAACAT
87008754 CAAAAACAT
1 CAAAAACAT
87008763 CAAAAAC
1 CAAAAAC
87008770 CGAGCTCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (9 bp):
CAAAAACAT
Found at i:87012440 original size:40 final size:40
Alignment explanation
Indices: 87012361--87012537 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
87012351 CGGATGATAA
* * ** *
87012361 CCGGACTAAGATCCGAAGGCATTCGTGTGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * * *
87012401 TCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTATAT
* *
87012441 CCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* *
87012481 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
87012521 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
87012538 ATACTTGGGT
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 97 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
Found at i:87012499 original size:80 final size:79
Alignment explanation
Indices: 87012361--87012537 Score: 232
Period size: 80 Copynumber: 2.2 Consensus size: 79
87012351 CGGATGATAA
* * * * *
87012361 CCGGACTAAGATCCGAAGGCATTCGTGTGAGTTGCTATATTCGGGCTATGTCCCGAAGGCATTTA
1 CCGG-CTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
87012426 TGCTAG-TGATTATAT
65 TGCGAGTTG-TTATAT
* *
87012441 CCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
87012506 TGCGAGTTGTTATAT
65 TGCGAGTTGTTATAT
87012521 CCGGCTAA-ATCCCGAAG
1 CCGGCTAAGA-CCCGAAG
87012538 ATACTTGGGT
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 13 0.15
80 68 0.79
81 4 0.05
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTAT
GCGAGTTGTTATAT
Found at i:87012805 original size:22 final size:22
Alignment explanation
Indices: 87012765--87012806 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
87012755 GAATGTGCAT
*
87012765 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
87012787 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
87012807 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:87014411 original size:43 final size:43
Alignment explanation
Indices: 87014287--87014447 Score: 170
Period size: 43 Copynumber: 3.7 Consensus size: 43
87014277 GGAAAGCTCG
* *
87014287 TACAATGCCAACGTCCTAGATGTGGTCTTACATGT-AATCAAA
1 TACAATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCAAA
** *
87014329 TATTGATGCC-ACTGTCCCAGACAG-GGTCTTACACG-AAATCAAA
1 TA-CAATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAAATCAAA
* *
87014372 TACAATGCCAACATCCGAGACGTGGTCTTACATGTAAATCATAA
1 TACAATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCA-AA
*
87014416 GT-CGATGCCAACGTCCCAGACGTGGTCTTACA
1 -TACAATGCCAACGTCCCAGACGTGGTCTTACA
87014448 CGATAACACA
Statistics
Matches: 97, Mismatches: 13, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
41 1 0.01
42 26 0.27
43 39 0.40
44 30 0.31
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
TACAATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCAAA
Found at i:87014445 original size:86 final size:85
Alignment explanation
Indices: 87014287--87014450 Score: 226
Period size: 85 Copynumber: 1.9 Consensus size: 85
87014277 GGAAAGCTCG
* * * *
87014287 TACAATGCCAACGTCCTAGATGTGGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACA
1 TACAATGCCAACATCCGAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACA
87014352 GGGTCTTACACGAAATCAAA
66 GGGTCTTACACGAAATCAAA
*
87014372 TACAATGCCAACATCCGAGACGTGGTCTTACATGTAAATCATAA-GTCGATGCCAAC-GTCCCAG
1 TACAATGCCAACATCCGAGACGTGGTCTTACATGT-AATCA-AATATCGATGCC-ACTGTCCCAG
87014435 AC-GTGGTCTTACACGA
63 ACAG-GGTCTTACACGA
87014451 TAACACATAT
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
85 33 0.47
86 33 0.47
87 4 0.06
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (85 bp):
TACAATGCCAACATCCGAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACA
GGGTCTTACACGAAATCAAA
Found at i:87030785 original size:25 final size:24
Alignment explanation
Indices: 87030727--87030785 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
87030717 AAATTCCAAT
*
87030727 AAATAAAAATATATAAAATTATTA
1 AAATAAAAATAAATAAAATTATTA
*
87030751 AATATTAAAATAAAATAAATATT-TTA
1 AA-ATAAAAAT-AAATAAA-ATTATTA
87030777 AAATAAAAA
1 AAATAAAAA
87030786 ATAATATGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
24 2 0.07
25 13 0.45
26 11 0.38
27 3 0.10
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (24 bp):
AAATAAAAATAAATAAAATTATTA
Found at i:87030791 original size:20 final size:19
Alignment explanation
Indices: 87030755--87030792 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
87030745 TTATTAAATA
*
87030755 TTAAAATAAAATAAATATT
1 TTAAAATAAAAAAAATATT
87030774 TTAAAATAAAAAATAATAT
1 TTAAAATAAAAAA-AATAT
87030793 GGGCAGACCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
TTAAAATAAAAAAAATATT
Found at i:87030822 original size:48 final size:48
Alignment explanation
Indices: 87030764--87030858 Score: 163
Period size: 48 Copynumber: 2.0 Consensus size: 48
87030754 ATTAAAATAA
87030764 AATAAATATTTTAAAATAAAAAATAATATGGGCAGACCTAAAATGGGT
1 AATAAATATTTTAAAATAAAAAATAATATGGGCAGACCTAAAATGGGT
** *
87030812 AATAAATATTTTAAAATAAAAAATAATATGGGTGGGCCTAAAATGGG
1 AATAAATATTTTAAAATAAAAAATAATATGGGCAGACCTAAAATGGG
87030859 CTTAGGTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.51, C:0.05, G:0.17, T:0.27
Consensus pattern (48 bp):
AATAAATATTTTAAAATAAAAAATAATATGGGCAGACCTAAAATGGGT
Found at i:87033768 original size:18 final size:18
Alignment explanation
Indices: 87033747--87033782 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
87033737 AAAAGTTGTT
87033747 TTTACATATATTAATAAA
1 TTTACATATATTAATAAA
*
87033765 TTTATATATATTAATAAA
1 TTTACATATATTAATAAA
87033783 ATTATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTACATATATTAATAAA
Found at i:87033773 original size:16 final size:18
Alignment explanation
Indices: 87033752--87033794 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
87033742 TTGTTTTTAC
*
87033752 ATATATTAATAAATTTAT
1 ATATATTAATAAATATAT
87033770 ATATATTAATAAA-AT-T
1 ATATATTAATAAATATAT
*
87033786 ATATTTTAA
1 ATATATTAA
87033795 ATTATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 9 0.39
17 1 0.04
18 13 0.57
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATATTAATAAATATAT
Found at i:87033787 original size:18 final size:18
Alignment explanation
Indices: 87033752--87033789 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
87033742 TTGTTTTTAC
*
87033752 ATATATTAATAAATTTAT
1 ATATATTAATAAAATTAT
87033770 ATATATTAATAAAATTAT
1 ATATATTAATAAAATTAT
87033788 AT
1 AT
87033790 TTTAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATATTAATAAAATTAT
Done.