Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 288 of 770
Found at i:87700337 original size:98 final size:96
Alignment explanation
Indices: 87700098--87700337 Score: 268
Period size: 98 Copynumber: 2.4 Consensus size: 96
87700088 GTATGAGATG
* * * * *
87700098 TATATATGTGATAAGGCCTAATGGCCGATGTG-ATGAATGTGAAAGTGTGTATATGTGTGATAAG
1 TATATATGTGACAAAGCCGAATGGCCAATGTGAATG--T-TGAAAGTGTGTATATATGTGATAAG
* *
87700162 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
63 GCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
* * * * *
87700196 TATATGTGTGATAAGGCCTAATGGCCGATGTG-ATGAATGTGAAAGTGTGTATATATGTGATAAG
1 TATATATGTGACAAAGCCGAATGGCCAATGTGAATG--T-TGAAAGTGTGTATATATGTGATAAG
87700260 GCCTAATGGCCGACGTGATGAATGTGAAAGTGTATA
63 GCCTAATGGCCGACGTGATGAATGTGAAAGTG--TA
* *
87700296 TATATATGTGGCAAAGCCGAATGGCTAATGTGAATGTTGAAA
1 TATATATGTGACAAAGCCGAATGGCCAATGTGAATGTTGAAA
87700338 CATGTGATTA
Statistics
Matches: 128, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
98 98 0.77
99 1 0.01
100 26 0.20
101 3 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (96 bp):
TATATATGTGACAAAGCCGAATGGCCAATGTGAATGTTGAAAGTGTGTATATATGTGATAAGGCC
TAATGGCCGACGTGATGAATGTGAAAGTGTA
Found at i:87700424 original size:37 final size:36
Alignment explanation
Indices: 87700369--87700455 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
87700359 AACTTGGAAA
87700369 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
87700407 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
87700444 TATGTCCGGGTA
1 TATGTCCGGGTA
87700456 AGACTTCGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:87702384 original size:40 final size:40
Alignment explanation
Indices: 87702340--87702611 Score: 472
Period size: 40 Copynumber: 6.8 Consensus size: 40
87702330 GAGAATTGAG
*
87702340 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
87702380 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
87702420 AGTGATGTATCCGGACTAAGTTTCGAGGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
87702460 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
87702500 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
87702540 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
87702580 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
87702612 ATCGCGCTGG
Statistics
Matches: 224, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 224 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:87703453 original size:40 final size:41
Alignment explanation
Indices: 87703356--87703453 Score: 112
Period size: 41 Copynumber: 2.4 Consensus size: 41
87703346 TCGAATGGTG
* ** * *
87703356 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAAA
1 TCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAAA
87703397 TCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TCACTATAA
1 TCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTCACTA-AA
87703438 -CCGGGCTATGTCCCGA
1 TCCGGGCTATGTCCCGA
87703454 GGACAATCGA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.37
41 28 0.57
42 1 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (41 bp):
TCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAAA
Found at i:87703476 original size:40 final size:40
Alignment explanation
Indices: 87703398--87703495 Score: 94
Period size: 40 Copynumber: 2.5 Consensus size: 40
87703388 GTTACTAAAT
* *
87703398 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGGCAATCGAGCGAATCACTATAA
* * *
87703438 CCGGGCT-ATGTCCCG-AGGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGG-CAATCGAGCGAATCACTATAA
* *
87703478 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAATTCCCGAAGG
87703496 TACGTGGTTC
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
39 13 0.28
40 34 0.72
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGGCAATCGAGCGAATCACTATAA
Found at i:87706285 original size:49 final size:49
Alignment explanation
Indices: 87706224--87706428 Score: 365
Period size: 49 Copynumber: 4.2 Consensus size: 49
87706214 ATGTATGAGA
87706224 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
87706273 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
87706322 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
87706371 TGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
87706420 TATATATAT
1 TGTATATAT
87706429 ATGTGGCAAA
Statistics
Matches: 150, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 150 1.00
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:87706465 original size:98 final size:96
Alignment explanation
Indices: 87706259--87706465 Score: 256
Period size: 98 Copynumber: 2.1 Consensus size: 96
87706249 GCCGATGTGA
* *
87706259 TGAATG-TGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 TGAATGTTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGT
* * * * * *
87706323 GTATATGTGTGATAAGGCCTAATAGCCGATG
66 ATATATATGTGACAAAGCCGAATAGCCAATG
87706354 TG-ATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAG
1 TGAATG--T-TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAG
* * *
87706418 TGTATATATATATGTGGCAAAGCCGAATGGCTAATG
63 TG--TATATATATGTGACAAAGCCGAATAGCCAATG
87706454 TGAATGTTGAAA
1 TGAATGTTGAAA
87706466 CATGTGATTA
Statistics
Matches: 94, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
94 3 0.03
95 2 0.02
98 60 0.64
99 1 0.01
100 25 0.27
101 3 0.03
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
TGAATGTTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGT
ATATATATGTGACAAAGCCGAATAGCCAATG
Found at i:87706552 original size:37 final size:36
Alignment explanation
Indices: 87706497--87706583 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
87706487 AACTTGGAAA
87706497 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
87706535 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
87706572 TATGTCCGGGTA
1 TATGTCCGGGTA
87706584 AGACTTCGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:87711432 original size:34 final size:32
Alignment explanation
Indices: 87711390--87711454 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
87711380 GTTTCAGTAG
*
87711390 CAGTTCAGTCTCAGT-TAGGGCCTTAGCCCATTA
1 CAGTTCAGTATCAGTGT--GGCCTTAGCCCATTA
87711423 CAGTATCAGTATCAGTGTGGCCTTAGCCCATT
1 CAGT-TCAGTATCAGTGTGGCCTTAGCCCATT
87711455 TTAGTAATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 18 0.62
34 10 0.34
35 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (32 bp):
CAGTTCAGTATCAGTGTGGCCTTAGCCCATTA
Found at i:87717233 original size:40 final size:40
Alignment explanation
Indices: 87717176--87717406 Score: 296
Period size: 40 Copynumber: 5.8 Consensus size: 40
87717166 TCGAATGATG
* *
87717176 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
87717216 TCCGGACTAAGATCCGAAGGCAATT-TGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
87717255 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
87717295 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* *
87717335 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTGCTATAA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
87717376 -CCGGGCTATG-TCCAGAAGGCATTTGTGCGAG
1 TCCGGACTAAGATCC-GAAGGCATTTGTGCGAG
87717407 CTGCTATAAC
Statistics
Matches: 175, Mismatches: 8, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
39 39 0.22
40 128 0.73
41 8 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87717352 original size:80 final size:80
Alignment explanation
Indices: 87717176--87717433 Score: 314
Period size: 80 Copynumber: 3.2 Consensus size: 80
87717166 TCGAATGATG
* * *
87717176 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCAAT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
87717240 T-TGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
87717255 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCAT
87717318 TTGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
* * * *
87717335 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTGCTATAA-CCGGGCTATG-TCCAGAAGGCAT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGATCC-GAAGGCAT
* *
87717398 TTGTGCGAGCTGCTATAA
64 TTGTGCGAGTTACTA-AA
* *
87717416 -CCGGGCTATGTCCCGAAG
1 TCCGGGATAAGTCCCGAAG
87717434 TATTTGAACG
Statistics
Matches: 159, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
78 2 0.01
79 53 0.33
80 97 0.61
81 7 0.04
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:87717407 original size:40 final size:40
Alignment explanation
Indices: 87717176--87717433 Score: 278
Period size: 40 Copynumber: 6.5 Consensus size: 40
87717166 TCGAATGATG
* *
87717176 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCTACTAAA
* * *
87717216 TCCGGACTAAGAT-CCGAAGGCAATT-TGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
* *
87717255 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
* *
87717295 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
* *
87717335 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AA
* * *
87717376 -CCGGGCTATGTCCAGAAGGCATTTGTGCGAGCTGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AA
*
87717416 -CCGGGCTATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
87717434 TATTTGAACG
Statistics
Matches: 201, Mismatches: 12, Indels: 10
0.90 0.05 0.04
Matches are distributed among these distances:
39 35 0.17
40 161 0.80
41 5 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAA
Found at i:87717452 original size:39 final size:40
Alignment explanation
Indices: 87717310--87717458 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 40
87717300 ACTAAGATCC
** * * * * *
87717310 GAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTCCC
1 GAAGGCATTTGAACGAGCTGCTATAA-CCGGGCTATGTCCA
**
87717350 GAAGGCATTTGTGCGAGCTGCTATAACCGGGCTATGTCCA
1 GAAGGCATTTGAACGAGCTGCTATAACCGGGCTATGTCCA
** *
87717390 GAAGGCATTTGTGCGAGCTGCTATAACCGGGCTATGTCCC
1 GAAGGCATTTGAACGAGCTGCTATAACCGGGCTATGTCCA
* *
87717430 GAA-GTATTTGAACGAG-TAGCTATATCCGG
1 GAAGGCATTTGAACGAGCT-GCTATAACCGG
87717459 TTAAACTCCG
Statistics
Matches: 97, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 20 0.21
40 74 0.76
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
GAAGGCATTTGAACGAGCTGCTATAACCGGGCTATGTCCA
Found at i:87742376 original size:53 final size:55
Alignment explanation
Indices: 87742264--87742376 Score: 142
Period size: 53 Copynumber: 2.1 Consensus size: 55
87742254 AAGACCATGT
* *
87742264 CATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCCAAGG
1 CATGGCATTGATGAGTTACTATAAGGCAAAGGTACCATGTAAGACCATGCCAAGA
* * * *
87742319 CATGGCATTGGTGAGTT-C-ATAAGGC-AAGGATACCATGTACGACCATGGCGAGA
1 CATGGCATTGATGAGTTACTATAAGGCAAAGG-TACCATGTAAGACCATGCCAAGA
87742372 CATGG
1 CATGG
87742377 AAATGGTAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
52 4 0.08
53 30 0.59
54 1 0.02
55 16 0.31
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.21
Consensus pattern (55 bp):
CATGGCATTGATGAGTTACTATAAGGCAAAGGTACCATGTAAGACCATGCCAAGA
Found at i:87745702 original size:24 final size:24
Alignment explanation
Indices: 87745675--87745786 Score: 206
Period size: 24 Copynumber: 4.7 Consensus size: 24
87745665 ATTATGTTCA
**
87745675 CACACATAGTGCCATAGCGAATCG
1 CACACATAGTGCCATAGTAAATCG
87745699 CACACATAGTGCCATAGTAAATCG
1 CACACATAGTGCCATAGTAAATCG
87745723 CACACATAGTGCCATAGTAAATCG
1 CACACATAGTGCCATAGTAAATCG
87745747 CACACATAGTGCCATAGTAAATCG
1 CACACATAGTGCCATAGTAAATCG
87745771 CACACATAGTGCCATA
1 CACACATAGTGCCATA
87745787 TATTTCCTGC
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 86 1.00
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.20
Consensus pattern (24 bp):
CACACATAGTGCCATAGTAAATCG
Found at i:87750220 original size:93 final size:93
Alignment explanation
Indices: 87750108--87750278 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
87750098 GCCCATAAGT
* *
87750108 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
87750173 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
87750201 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
87750266 CGAGTTCGGATGC
66 CGAGTTCGGATGC
87750279 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:87750275 original size:46 final size:46
Alignment explanation
Indices: 87750100--87750275 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
87750090 TGTAACCCGC
* * * *
87750100 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
87750146 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
87750196 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
87750239 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
87750276 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 2 0.02
46 64 0.58
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:87752694 original size:29 final size:29
Alignment explanation
Indices: 87752655--87752742 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
87752645 CAAAGATAAC
*
87752655 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
87752684 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
87752713 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
87752743 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:87752713 original size:15 final size:15
Alignment explanation
Indices: 87752655--87752733 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
87752645 CAAAGATAAC
*
87752655 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
87752669 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
87752684 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
87752698 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
87752713 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
87752728 AAGAAA
1 AAGAAA
87752734 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:87752742 original size:15 final size:15
Alignment explanation
Indices: 87752666--87752742 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
87752656 AGAAAACCGA
87752666 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
87752681 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
87752695 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
87752709 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
87752725 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
87752740 ATA
1 ATA
87752743 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:87755748 original size:46 final size:46
Alignment explanation
Indices: 87755681--87755854 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
87755671 TGTAACCCGC
*
87755681 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
87755727 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
87755777 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
87755819 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
87755855 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 3 0.03
45 28 0.25
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:87755847 original size:92 final size:93
Alignment explanation
Indices: 87755689--87755858 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
87755679 GCCCATAAGT
* *
87755689 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
87755754 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
87755782 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
87755846 CGAGTTCGGATGC
66 CGAGTTCGGATGC
87755859 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 46 0.62
93 28 0.38
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:87767356 original size:40 final size:41
Alignment explanation
Indices: 87767297--87767389 Score: 118
Period size: 40 Copynumber: 2.3 Consensus size: 41
87767287 ATAAATTTAG
* *
87767297 TAGGTATGGCT-TAAGAGCACATACGTTTAAGTAGATTCAA
1 TAGGTATGGCTCGAAGAGCACATACATTTAAGTAGATTCAA
* * *
87767337 TAGGTATGGCTCGAA-AGCACATACATTTTAGTAGATTTAG
1 TAGGTATGGCTCGAAGAGCACATACATTTAAGTAGATTCAA
*
87767377 TAGGTATGACTCG
1 TAGGTATGGCTCG
87767390 TCTGAGCACC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 44 0.96
41 2 0.04
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (41 bp):
TAGGTATGGCTCGAAGAGCACATACATTTAAGTAGATTCAA
Found at i:87768547 original size:20 final size:21
Alignment explanation
Indices: 87768524--87768566 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
87768514 ATAAGCATGT
*
87768524 ATTTTG-ATGTTTGATGATAG
1 ATTTTGAATGCTTGATGATAG
*
87768544 ATTTTGAATGCTTGTTGATAG
1 ATTTTGAATGCTTGATGATAG
87768565 AT
1 AT
87768567 ATACAAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.26, C:0.02, G:0.23, T:0.49
Consensus pattern (21 bp):
ATTTTGAATGCTTGATGATAG
Found at i:87772523 original size:43 final size:44
Alignment explanation
Indices: 87772462--87772544 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
87772452 CATACATTCA
*
87772462 TATGGCCCACTAGGCCC-AATCTCATTCATATGGCCCATTTTTG
1 TATGGCCCACTAGGCCCAAATCACATTCATATGGCCCATTTTTG
* *
87772505 TATGGCCTATTAGGCCCAAATCACATTCATATGGCCCATT
1 TATGGCCCACTAGGCCCAAATCACATTCATATGGCCCATT
87772545 AGGCCCAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
43 15 0.42
44 21 0.58
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (44 bp):
TATGGCCCACTAGGCCCAAATCACATTCATATGGCCCATTTTTG
Found at i:87772547 original size:29 final size:29
Alignment explanation
Indices: 87772505--87772563 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
87772495 CCCATTTTTG
*
87772505 TATGGCCTATTAGGCCCAAATCACATTCA
1 TATGGCCCATTAGGCCCAAATCACATTCA
87772534 TATGGCCCATTAGGCCCAAATCACATTCA
1 TATGGCCCATTAGGCCCAAATCACATTCA
87772563 T
1 T
87772564 GCTTTCATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATTCA
Found at i:87772639 original size:17 final size:18
Alignment explanation
Indices: 87772617--87772650 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
87772607 TGCCTATTAT
87772617 GGGCCCAAT-AGCCCATC
1 GGGCCCAATCAGCCCATC
*
87772634 GGGCCCACTCAGCCCAT
1 GGGCCCAATCAGCCCAT
87772651 TCTGGCCCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.44, G:0.24, T:0.12
Consensus pattern (18 bp):
GGGCCCAATCAGCCCATC
Found at i:87774477 original size:28 final size:27
Alignment explanation
Indices: 87774390--87774482 Score: 84
Period size: 28 Copynumber: 3.3 Consensus size: 27
87774380 ATGAATATAT
* *
87774390 GCACGATGTGTCCGAAATTATTAACCGA
1 GCACTATGTGTGCGAAATTATTAA-CGA
*
87774418 GCACTATGTGTGC-AAGATCGAGTGTAA-G-
1 GCACTATGTGTGCGAA-AT-TA-T-TAACGA
87774446 GCACTATGTGTGCGAAATTATTAATCGA
1 GCACTATGTGTGCGAAATTATTAA-CGA
87774474 GCACTATGT
1 GCACTATGT
87774483 TTACGAGATC
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 4 0.08
28 37 0.70
29 4 0.08
30 1 0.02
31 3 0.06
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (27 bp):
GCACTATGTGTGCGAAATTATTAACGA
Found at i:87774513 original size:56 final size:56
Alignment explanation
Indices: 87774390--87774525 Score: 182
Period size: 56 Copynumber: 2.4 Consensus size: 56
87774380 ATGAATATAT
* * *
87774390 GCACGATGTGTCCGAAATTATTAACCGAGCACTATGTGTGCAAGATCGAGTGTAAG
1 GCACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTACAAGATCGAGTGTAAG
* * * * *
87774446 GCACTATGTGTGCGAAATTATTAATCGAGCACTATGTTTACGAGATCGGGTTTAAG
1 GCACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTACAAGATCGAGTGTAAG
87774502 GCACTATGTGTGTGCGAAATTATT
1 GCACTA--TGTGTGCGAAATTATT
87774526 TAGGGAATAT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
56 54 0.77
58 16 0.23
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (56 bp):
GCACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTACAAGATCGAGTGTAAG
Found at i:87774614 original size:2 final size:2
Alignment explanation
Indices: 87774607--87774640 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
87774597 TGTGTATAGA
* *
87774607 AT AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87774641 TTGTCTAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87775608 original size:51 final size:51
Alignment explanation
Indices: 87775533--87775639 Score: 178
Period size: 51 Copynumber: 2.1 Consensus size: 51
87775523 AGTTGTGTTT
* *
87775533 TGTTAGGAAATGCCTCGTAACCCCATTCCGGCGATGGATACGGGTTAGGGG
1 TGTTAGGAAATGCCTCGTAACCCCATTCCGGAGACGGATACGGGTTAGGGG
* *
87775584 TGTTAGGAAATGCCTCGTAGCCCCATTCTGGAGACGGATACGGGTTAGGGG
1 TGTTAGGAAATGCCTCGTAACCCCATTCCGGAGACGGATACGGGTTAGGGG
87775635 TGTTA
1 TGTTA
87775640 CATTTGATTG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.21, C:0.20, G:0.34, T:0.25
Consensus pattern (51 bp):
TGTTAGGAAATGCCTCGTAACCCCATTCCGGAGACGGATACGGGTTAGGGG
Found at i:87793687 original size:28 final size:27
Alignment explanation
Indices: 87793642--87793814 Score: 183
Period size: 28 Copynumber: 6.3 Consensus size: 27
87793632 TGGAGGAAGC
* *
87793642 GTTCTGGTGGCTATGCCACAAACATCT
1 GTTCTGGTGGCTACGCCACAAATATCT
*
87793669 GCTTCTGGTGGCTACGCCACAATTATCT
1 G-TTCTGGTGGCTACGCCACAAATATCT
* *
87793697 GTTCTGGTGCCT-CTGCTAC-AATATCT
1 GTTCTGGTGGCTAC-GCCACAAATATCT
* *
87793723 GTATCTGGTGGCTATGCCACAAACATCT
1 GT-TCTGGTGGCTACGCCACAAATATCT
*
87793751 GCTTCTGGTGGCTACGCCACAATTATCT
1 G-TTCTGGTGGCTACGCCACAAATATCT
*
87793779 GTTCTGGTGCCT-CTGCCAC-AATATCT
1 GTTCTGGTGGCTAC-GCCACAAATATCT
87793805 GTATCTGGTG
1 GT-TCTGGTG
87793815 ACTCTGTCAC
Statistics
Matches: 123, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
26 18 0.15
27 50 0.41
28 54 0.44
29 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.22, T:0.33
Consensus pattern (27 bp):
GTTCTGGTGGCTACGCCACAAATATCT
Found at i:87793717 original size:27 final size:26
Alignment explanation
Indices: 87793642--87793834 Score: 201
Period size: 27 Copynumber: 7.1 Consensus size: 26
87793632 TGGAGGAAGC
* *
87793642 GTTCTGGTGGCTATGCCACAAACATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
87793669 GCTTCTGGTGGCTAC-GCCACAATTATCT
1 G-TTCTGGTGGCT-CTGCCACAA-TATCT
* *
87793697 GTTCTGGTGCCTCTGCTACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
87793723 GTATCTGGTGGCTATGCCACAAACATCT
1 GT-TCTGGTGGCTCTGCCAC-AATATCT
87793751 GCTTCTGGTGGCTAC-GCCACAATTATCT
1 G-TTCTGGTGGCT-CTGCCACAA-TATCT
*
87793779 GTTCTGGTGCCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
87793805 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
87793832 GTT
1 GTT
87793835 TTGGCAGCCA
Statistics
Matches: 142, Mismatches: 13, Indels: 23
0.80 0.07 0.13
Matches are distributed among these distances:
26 17 0.12
27 76 0.54
28 48 0.34
29 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:87793826 original size:82 final size:82
Alignment explanation
Indices: 87793644--87793814 Score: 333
Period size: 82 Copynumber: 2.1 Consensus size: 82
87793634 GAGGAAGCGT
87793644 TCTGGTGGCTATGCCACAAACATCTGCTTCTGGTGGCTACGCCACAATTATCTGTTCTGGTGCCT
1 TCTGGTGGCTATGCCACAAACATCTGCTTCTGGTGGCTACGCCACAATTATCTGTTCTGGTGCCT
*
87793709 CTGCTACAATATCTGTA
66 CTGCCACAATATCTGTA
87793726 TCTGGTGGCTATGCCACAAACATCTGCTTCTGGTGGCTACGCCACAATTATCTGTTCTGGTGCCT
1 TCTGGTGGCTATGCCACAAACATCTGCTTCTGGTGGCTACGCCACAATTATCTGTTCTGGTGCCT
87793791 CTGCCACAATATCTGTA
66 CTGCCACAATATCTGTA
87793808 TCTGGTG
1 TCTGGTG
87793815 ACTCTGTCAC
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 88 1.00
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.33
Consensus pattern (82 bp):
TCTGGTGGCTATGCCACAAACATCTGCTTCTGGTGGCTACGCCACAATTATCTGTTCTGGTGCCT
CTGCCACAATATCTGTA
Found at i:87795923 original size:40 final size:40
Alignment explanation
Indices: 87795868--87796117 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
87795858 AACATTGGAA
87795868 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
87795908 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
87795948 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
87795988 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
87796028 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
87796067 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
87796108 CTATATCCGG
1 ATATATCCGG
87796118 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:87807076 original size:39 final size:40
Alignment explanation
Indices: 87806953--87807118 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
87806943 AAATTGAATG
* * *
87806953 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
87806992 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
87807032 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
87807071 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
87807111 ATATCCGG
1 ATATCCGG
87807119 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:87807085 original size:79 final size:79
Alignment explanation
Indices: 87806953--87807102 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
87806943 AAATTGAATG
*
87806953 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
87807018 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
87807032 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
87807095 ATTTGTGC
64 AATTGTGC
87807103 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:87811297 original size:47 final size:47
Alignment explanation
Indices: 87811244--87811523 Score: 397
Period size: 47 Copynumber: 6.0 Consensus size: 47
87811234 AAGATATGTA
*
87811244 TATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATG
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
* *
87811291 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
*
87811338 TATATGATAAGGCCGAATGGCCAATGTGATGAATGTG--A-TGTATG
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
* *
87811382 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGCAACTGTATG
1 --TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
* *
87811431 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
* * * *
87811478 TATATGATAAGGTCGAATGGTCAATGTGATGGAA-GTGGAAGTGTAT
1 TATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTGTAT
87811524 AACTGTGATA
Statistics
Matches: 211, Mismatches: 16, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
44 4 0.02
45 1 0.00
46 36 0.17
47 160 0.76
48 4 0.02
49 6 0.03
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
Found at i:87811487 original size:140 final size:140
Alignment explanation
Indices: 87811238--87811508 Score: 497
Period size: 140 Copynumber: 1.9 Consensus size: 140
87811228 ATGTACAAGA
*
87811238 TATGTATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATGTATGTGATAAGG
1 TATGTATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAACTGTATGTATGTGATAAGG
87811303 CCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGCCAATGTGAT
66 CCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGCCAATGTGAT
87811368 GAATGTGATG
131 GAATGTGATG
* *
87811378 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGCAACTGTATGTATGTGATAAGG
1 TATGTATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAACTGTATGTATGTGATAAGG
* *
87811443 CCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGTCGAATGGTCAATGTGAT
66 CCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGCCAATGTGAT
87811508 G
131 G
87811509 GAAGTGGAAG
Statistics
Matches: 126, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
140 126 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (140 bp):
TATGTATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAACTGTATGTATGTGATAAGG
CCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGCCAATGTGAT
GAATGTGATG
Found at i:87817032 original size:18 final size:17
Alignment explanation
Indices: 87816998--87817050 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
87816988 AAGAAACATT
*
87816998 ATCAGAACTAGAGTCAGA
1 ATCAGAAC-AGAATCAGA
*
87817016 ATCAGAATCAGAATCAGT
1 ATCAGAA-CAGAATCAGA
87817034 ATCAGGTAACAGAATCA
1 ATCA-G-AACAGAATCA
87817051 AAATTAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 18 0.60
19 10 0.33
20 2 0.07
ACGTcount: A:0.45, C:0.17, G:0.19, T:0.19
Consensus pattern (17 bp):
ATCAGAACAGAATCAGA
Found at i:87817610 original size:27 final size:27
Alignment explanation
Indices: 87817575--87817821 Score: 302
Period size: 27 Copynumber: 9.2 Consensus size: 27
87817565 GGTAAAATGG
* * *
87817575 TAATT-TACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
87817601 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
87817628 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* * * *
87817655 TATTTCTACCCTACAAGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCGA
*
87817682 TAATTCTACCCTACAGGGGTATTT-TA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
87817708 GTAATTCTACCCTACAGGGATATTTC-A
1 -TAATTCTACCCTACAGGGGTATTTCGA
* *
87817735 GTATTTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTCGA
*
87817763 TATTTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
87817790 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
87817817 TAATT
1 TAATT
87817822 TTGTAAATCG
Statistics
Matches: 196, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.03
27 191 0.97
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:87817715 original size:81 final size:81
Alignment explanation
Indices: 87817580--87817818 Score: 345
Period size: 81 Copynumber: 3.0 Consensus size: 81
87817570 AATGGTAATT
* * * * *
87817580 TACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGG
1 TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGG
87817645 GGTATTTCGGTATTTC
66 GGTATTTCGGTATTTC
*
87817661 TACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGG
1 TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGG
* *
87817726 GATATTTCAGTATTTC
66 GGTATTTCGGTATTTC
* * * * *
87817742 TACCCTACAGGGGTATTTCGGTATTTCTACCCTACAGGGGTA-TTTCGATATTTCTACCCTACAA
1 TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAG-TAATTCTACCCTACAG
87817806 GGGTATTTCGGTA
65 GGGTATTTCGGTA
87817819 ATTTTGTAAA
Statistics
Matches: 141, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
80 4 0.03
81 137 0.97
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (81 bp):
TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGG
GGTATTTCGGTATTTC
Found at i:87817901 original size:27 final size:28
Alignment explanation
Indices: 87817871--87817935 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 28
87817861 GGTACTTTGG
87817871 TAATTTTACAAGCT-GAGGATATTTCAA
1 TAATTTTACAAGCTCGAGGATATTTCAA
* * *
87817898 TAATTTTAC-AGGTCGAGGGTATTTCAG
1 TAATTTTACAAGCTCGAGGATATTTCAA
*
87817925 TAATTTCACAA
1 TAATTTTACAA
87817936 ATCAGGGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 3 0.09
27 28 0.88
28 1 0.03
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (28 bp):
TAATTTTACAAGCTCGAGGATATTTCAA
Found at i:87817944 original size:27 final size:27
Alignment explanation
Indices: 87817914--87818119 Score: 243
Period size: 27 Copynumber: 7.6 Consensus size: 27
87817904 TACAGGTCGA
** *
87817914 GGGTATTTCAGTAATTTCACAAA-TCAG
1 GGGTATTTTGGTAATTTTACAAACT-AG
*
87817941 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
87817968 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
87817995 GGGTATTTTGGCAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
87818022 AGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
87818049 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* ** * *
87818076 GGGTATTTTGATAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
87818103 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
87818120 GGTAAACTAA
Statistics
Matches: 151, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
27 150 0.99
28 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:87817999 original size:81 final size:79
Alignment explanation
Indices: 87817853--87818119 Score: 268
Period size: 81 Copynumber: 3.3 Consensus size: 79
87817843 ATAATTCTGT
* * * * * ***
87817853 AAATCAGGGGTACTTTGGTAATTTTACAAGCTGAGGATATTTCAATAATTTTACAGGTC-GAGGG
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT-TATAATTTTACAAACCAG-GGG
*
87817917 TATTTCAGTAATTTCAC
64 TATTT-AGTAATTTTAC
87817934 AAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGATAATTTTACAAACCAGGGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTT-ATAATTTTACAAACCAGGGGT
* *
87817999 ATTTTGGCAATTTTAC
65 A-TTTAGTAATTTTAC
* * * *
87818015 AAA-CTAGAGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACTAGGGG
1 AAATC-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTA-TAATTTTACAAACCAGGGG
* **
87818079 TATTTTGATAATTTTGT
64 TATTTAG-TAATTTTAC
* *
87818096 AAACCAAGGGTATTTTGGTAATTT
1 AAATCAGGGGTATTTTGGTAATTT
87818120 GGTAAACTAA
Statistics
Matches: 158, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
80 6 0.04
81 147 0.93
82 5 0.03
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.39
Consensus pattern (79 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTATAATTTTACAAACCAGGGGTA
TTTAGTAATTTTAC
Found at i:87818128 original size:54 final size:54
Alignment explanation
Indices: 87817941--87818119 Score: 277
Period size: 54 Copynumber: 3.3 Consensus size: 54
87817931 CACAAATCAG
* * *
87817941 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTATAAACCAA
* * * *
87817995 GGGTATTTTGGCAATTTTACAAACTAGAGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTATAAACCAA
* *
87818049 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGATAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTATAAACCAA
87818103 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
87818120 GGTAAACTAA
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 111 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTATAAACCAA
Found at i:87826747 original size:19 final size:20
Alignment explanation
Indices: 87826712--87826749 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
87826702 TTAAATCAAC
*
87826712 AACTAATATGTAATGAAATA
1 AACTAATATGCAATGAAATA
87826732 AACTAA-ATGCAATGAAAT
1 AACTAATATGCAATGAAAT
87826750 GATTTAGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (20 bp):
AACTAATATGCAATGAAATA
Found at i:87835757 original size:50 final size:50
Alignment explanation
Indices: 87835618--87835899 Score: 316
Period size: 50 Copynumber: 5.6 Consensus size: 50
87835608 GTTGTGAGAA
* * *** *
87835618 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG--TTAGGT
* * *
87835670 CACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGGTTAGTT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * * * * * * * *
87835720 CGCATGTATAGTATTAAGTGCAGGCTGCTATGCGTACCTGATAGTTTTA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-G-GTTAGGT
*
87835771 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* *
87835821 CACATGTGTAGTACTAAGTCCAGGCTACTACGTGTACCAGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
*
87835870 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
87835900 TGCATACCAG
Statistics
Matches: 192, Mismatches: 35, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
49 34 0.18
50 83 0.43
51 36 0.19
52 39 0.20
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
Found at i:87835805 original size:101 final size:99
Alignment explanation
Indices: 87835669--87835899 Score: 300
Period size: 101 Copynumber: 2.3 Consensus size: 99
87835659 TGGTTTTAGG
* * * * *
87835669 TCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGGTTAGTTCGCATGTATAGTAT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTATAGTAC
* * * * *
87835734 TAAGTGCAGGCTGCTATGCGTACCTGATAGTTTTAA
66 TAAGTCCAGGCTACTACGCGTACCAGAT--TGTTAA
* *
87835770 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTATAGTAC
* **
87835835 TAAGTCCAGGCTACTACGTGTACCAGATTGTTGG
66 TAAGTCCAGGCTACTACGCGTACCAGATTGTTAA
*
87835869 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
87835900 TGCATACCAG
Statistics
Matches: 114, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 33 0.29
101 81 0.71
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (99 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTATAGTAC
TAAGTCCAGGCTACTACGCGTACCAGATTGTTAA
Found at i:87836132 original size:16 final size:15
Alignment explanation
Indices: 87836111--87836140 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
87836101 GAATGGAGTA
87836111 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
87836127 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
87836141 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:87840508 original size:20 final size:22
Alignment explanation
Indices: 87840473--87840515 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
87840463 TATAAATAGG
87840473 CTCCTAAACACTTGTT-AATGA
1 CTCCTAAACACTTGTTAAATGA
87840494 CTCCTAAAC-CTTGTTAAATGA
1 CTCCTAAACACTTGTTAAATGA
87840515 C
1 C
87840516 AACTTTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.33
Consensus pattern (22 bp):
CTCCTAAACACTTGTTAAATGA
Found at i:87841639 original size:39 final size:39
Alignment explanation
Indices: 87841595--87841754 Score: 275
Period size: 39 Copynumber: 4.1 Consensus size: 39
87841585 AATTATATTA
87841595 CTAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CTAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
87841634 CTAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CTAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
87841673 CTAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTT
1 CTAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
87841712 CCAGCACAAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CTAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
87841751 CTAG
1 CTAG
87841755 TGTCTTGCAT
Statistics
Matches: 114, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CTAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:87850201 original size:129 final size:130
Alignment explanation
Indices: 87849759--87850313 Score: 562
Period size: 129 Copynumber: 4.1 Consensus size: 130
87849749 TTAGAAAAAG
* * * *
87849759 TAATTATATTCTTTCCAAAATAATATTAATTTCTATGTCTTTTATATTTTGACCGAAAGTAATTA
1 TAATTATATT-TTTCCAAAAGAATATTAATTCCCATGTCTTTTATATTTTGACCGAAATTAATTA
* * *
87849824 ATATAACTGTTTATATTAATAAACTTGATAAAATATATACAATTAATATTTTGTATGAATCAAAA
65 ATATAATTGTTTATATTAATAAA-TTGGTAAAATATA-A-AACTAATA--TTGTAT--ATC-AAA
*
87849889 TTTTATATAT
122 -TTAATATAT
* * * *
87849899 TAATTATATTTTTCCTAAAGAATATTAATTTCTA-GTTCTTTTATATTTTGACCAAAATTAATTA
1 TAATTATATTTTTCCAAAAGAATATTAATTCCCATG-TCTTTTATATTTTGACCGAAATTAATTA
* * * * *
87849963 ATGTAATTATTTACATTAATAAATTTGGTAATATATAAAATTAATATTTTGTATGAATCAAATTA
65 ATATAATTGTTTATATTAATAAA-TTGGTAAAATATAAAACTAATA--TTGTAT--ATCAAATTA
*
87850028 ATTTAT
125 ATATAT
* *
87850034 TAATTATATTATTTCTAAAAGAATATTAATTCCCATGTCTTTTATATTTTGACTGAAATTAATTA
1 TAATTATATT-TTTCCAAAAGAATATTAATTCCCATGTCTTTTATATTTTGACCGAAATTAATTA
* *
87850099 ATATAATTGTTTATATTAATAAATTGAGTAAAATGTATAAACTAATA-T-T-T-TCAAATTCATA
65 ATATAATTGTTTATATTAATAAATTG-GTAAAATATA-AAACTAATATTGTATATCAAATTAATA
87850160 TAT
128 TAT
* *
87850163 CAATTATATTCTTTCCAAAAGAATATTAATTGCCATGTCTTTTATATTTTGACCGAAATTAATTA
1 TAATTATATT-TTTCCAAAAGAATATTAATTCCCATGTCTTTTATATTTTGACCGAAATTAATTA
** *
87850228 ATATAATTGTTTATATTAATAAATTCTATAAAATATATATACAATTAATATTTTGTATGAATCAA
65 ATATAATTGTTTATATTAATAAATT-GGT-AAA-ATATA-A-AACTAATA--TTGTAT--ATCAA
*
87850293 ATTCATATAT
121 ATTAATATAT
87850303 TAATTATATTT
1 TAATTATATTT
87850314 ATGTTCTCTA
Statistics
Matches: 361, Mismatches: 37, Indels: 35
0.83 0.09 0.08
Matches are distributed among these distances:
129 98 0.27
130 3 0.01
131 6 0.02
132 8 0.02
133 1 0.00
134 1 0.00
135 21 0.06
136 78 0.22
137 31 0.09
138 2 0.01
139 79 0.22
140 33 0.09
ACGTcount: A:0.41, C:0.07, G:0.06, T:0.46
Consensus pattern (130 bp):
TAATTATATTTTTCCAAAAGAATATTAATTCCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAATTGTTTATATTAATAAATTGGTAAAATATAAAACTAATATTGTATATCAAATTAATATAT
Found at i:87852669 original size:27 final size:27
Alignment explanation
Indices: 87852631--87852696 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
87852621 TTACTGAAAT
* *
87852631 GGGCTAAGGCCCTAATTGAGATTGCAA
1 GGGCTTAGGCCCTAATTGAGACTGCAA
*
87852658 GGGCTTAGGCCCTAATTGAGACTGTAA
1 GGGCTTAGGCCCTAATTGAGACTGCAA
87852685 GGGCTTAGGCCC
1 GGGCTTAGGCCC
87852697 GAAATGTGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (27 bp):
GGGCTTAGGCCCTAATTGAGACTGCAA
Found at i:87860718 original size:39 final size:40
Alignment explanation
Indices: 87860675--87860841 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
87860665 CGGAATATAA
87860675 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTC-TAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
87860714 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
87860754 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
87860794 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
87860834 CCGGATAT
1 CCGGATAT
87860842 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
38 1 0.01
39 30 0.28
40 75 0.71
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:87872745 original size:37 final size:37
Alignment explanation
Indices: 87872695--87872822 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
87872685 TTATTACGAA
87872695 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
87872732 GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
87872769 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
87872806 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
87872823 TTTCCAAGTT
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
37 82 0.94
38 5 0.06
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:87873018 original size:49 final size:49
Alignment explanation
Indices: 87872909--87873148 Score: 421
Period size: 49 Copynumber: 4.9 Consensus size: 49
87872899 CACACATATA
87872909 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
87872956 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
87873005 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
* *
87873054 TTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
87873103 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
87873149 TCTCATACAT
Statistics
Matches: 184, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 36 0.20
49 148 0.80
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
Found at i:87877977 original size:33 final size:34
Alignment explanation
Indices: 87877934--87878028 Score: 97
Period size: 34 Copynumber: 2.8 Consensus size: 34
87877924 ACTATATTTA
* *
87877934 TACTGTAATGGGCTTAGGCC-ACACTGATACTAT
1 TACTGAAATGGGCTAAGGCCTACACTGATACTAT
* * *
87877967 TACTGAAATGGGCTCAA-GCCTAGACTGCTACTGT
1 TACTGAAATGGGCT-AAGGCCTACACTGATACTAT
*
87878001 TACTGAAATAGGCTAAGGCCGTA-ACTGA
1 TACTGAAATGGGCTAAGGCC-TACACTGA
87878029 GACTGCAAGG
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
33 18 0.35
34 31 0.61
35 2 0.04
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (34 bp):
TACTGAAATGGGCTAAGGCCTACACTGATACTAT
Found at i:87881277 original size:9 final size:9
Alignment explanation
Indices: 87881263--87881288 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
87881253 TTGGGCCTCG
87881263 ATGGGCCCA
1 ATGGGCCCA
87881272 ATGGGCCCA
1 ATGGGCCCA
87881281 ATGGGCCC
1 ATGGGCCC
87881289 TTGGGCCTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.35, G:0.35, T:0.12
Consensus pattern (9 bp):
ATGGGCCCA
Found at i:87881671 original size:27 final size:27
Alignment explanation
Indices: 87881628--87881749 Score: 172
Period size: 27 Copynumber: 4.5 Consensus size: 27
87881618 GGTCGTTATC
*
87881628 TGACCGTAATAACCTTGTAGGGTAAAA
1 TGACCGTAATACCCTTGTAGGGTAAAA
**
87881655 TGATTGTAATACCCTTGTAGGGTAAAA
1 TGACCGTAATACCCTTGTAGGGTAAAA
*
87881682 TGACCGTAATACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCTTGTAGGGTAAAA
* * *
87881709 TGACCGTAATGCCCTTGTAAGGAAAAA
1 TGACCGTAATACCCTTGTAGGGTAAAA
*
87881736 TGACTGTAATACCC
1 TGACCGTAATACCC
87881750 CTATATTTTA
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
TGACCGTAATACCCTTGTAGGGTAAAA
Found at i:87881981 original size:27 final size:27
Alignment explanation
Indices: 87881913--87881982 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
87881903 ACTATGGTGA
* * * *
87881913 CTATGTCACATTCACTGTTACTGGTGG
1 CTATGCCACATTTACTGATACTAGTGG
*
87881940 CTATGCCACAATTACTGATACTAGTGG
1 CTATGCCACATTTACTGATACTAGTGG
*
87881967 CTTTGCCACATTTACT
1 CTATGCCACATTTACT
87881983 ATTTTTGGTA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (27 bp):
CTATGCCACATTTACTGATACTAGTGG
Found at i:87889535 original size:40 final size:39
Alignment explanation
Indices: 87889375--87889537 Score: 272
Period size: 39 Copynumber: 4.2 Consensus size: 39
87889365 TGTGTATGAA
*
87889375 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
87889414 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
87889453 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
87889492 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
87889532 TGTGCG
1 TGTGCG
87889538 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:87889553 original size:40 final size:39
Alignment explanation
Indices: 87889375--87889568 Score: 262
Period size: 39 Copynumber: 4.9 Consensus size: 39
87889365 TGTGTATGAA
* *
87889375 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
87889414 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
87889453 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
87889492 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
87889532 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
87889569 GTTTGAACGA
Statistics
Matches: 140, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 41 0.29
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:87896877 original size:38 final size:39
Alignment explanation
Indices: 87896806--87896966 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
87896796 TGTGTATGAA
*
87896806 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
87896845 TGTGCGAGTTGTGATATCC-GGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
87896882 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
87896921 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
87896961 TGTGCG
1 TGTGCG
87896967 GGTTACCATA
Statistics
Matches: 112, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
37 17 0.15
38 36 0.32
39 42 0.38
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:87906793 original size:46 final size:46
Alignment explanation
Indices: 87906630--87906802 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
87906620 AACCCGCCCC
* * * *
87906630 TAAGTGAGCTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
87906676 TAAATGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
87906724 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
87906769 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
87906803 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.55
47 28 0.27
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:87913850 original size:40 final size:40
Alignment explanation
Indices: 87913806--87913915 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
87913796 TTCACAATTT
* *
87913806 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
87913846 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
87913886 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
87913916 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:87921902 original size:40 final size:40
Alignment explanation
Indices: 87921858--87921967 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
87921848 TTCACAATTT
* *
87921858 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
87921898 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
87921938 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
87921968 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:87937115 original size:46 final size:46
Alignment explanation
Indices: 87937036--87937151 Score: 169
Period size: 46 Copynumber: 2.5 Consensus size: 46
87937026 TAAGTGAATG
* * *
87937036 CAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACT
1 CAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACT
* * *
87937082 CGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACT
1 CAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACT
*
87937128 CAAACTCAACTCAACGAGTTCGGA
1 CAGACTCAACTCAACGAGTTCGGA
87937152 TGCTCAACCA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 62 1.00
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (46 bp):
CAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACT
Found at i:87939585 original size:30 final size:30
Alignment explanation
Indices: 87939541--87939629 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
87939531 CAAAGATAAC
87939541 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
87939570 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
87939600 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
87939630 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:87939589 original size:15 final size:15
Alignment explanation
Indices: 87939541--87939620 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
87939531 CAAAGATAAC
*
87939541 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
87939555 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
87939570 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
87939585 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
87939600 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
87939615 AAGAAA
1 AAGAAA
87939621 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:87939629 original size:15 final size:15
Alignment explanation
Indices: 87939552--87939629 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
87939542 AGAAAACCGA
87939552 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
87939567 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
87939581 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
87939596 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
87939612 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
87939627 ATA
1 ATA
87939630 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:87942710 original size:93 final size:93
Alignment explanation
Indices: 87942551--87942721 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
87942541 GCCCCTAAGT
* *
87942551 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
87942616 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
87942644 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTC-AGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGA-ACTCAACTCA
87942708 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
87942722 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:87942718 original size:46 final size:46
Alignment explanation
Indices: 87942546--87942718 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
87942536 TAACCGCCCC
* * * *
87942546 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
87942592 TAAATGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
87942640 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
87942685 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
87942719 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.56
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:87942808 original size:38 final size:38
Alignment explanation
Indices: 87942757--87942834 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
87942747 TGTATCCTAA
*
87942757 TCTATTCCTAAGGTTCAAACAGGCTTTTTCCCTCGATC
1 TCTATTCCTAAGGTTCAAACAGGATTTTTCCCTCGATC
87942795 TCTATTCCTAAGGTTCAAACAGGATTTTTCCCTCGATC
1 TCTATTCCTAAGGTTCAAACAGGATTTTTCCCTCGATC
87942833 TC
1 TC
87942835 ACATTTGCCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.22, C:0.28, G:0.13, T:0.37
Consensus pattern (38 bp):
TCTATTCCTAAGGTTCAAACAGGATTTTTCCCTCGATC
Found at i:87952977 original size:53 final size:53
Alignment explanation
Indices: 87952897--87953132 Score: 170
Period size: 47 Copynumber: 4.8 Consensus size: 53
87952887 CCATGGCAAC
* *
87952897 ATGTGATATGTGATTTCCGTATAAGACCATAGT-TGGGCTATGACATCGGAGAG
1 ATGTGATATGTGACTTCCGTATAAGACCATA-TCTGGGATATGACATCGGAGAG
*
87952950 ATGTGATTATGTG-CTTCCGTATAAGACCATATCTGGGATATGGCATC---G-G
1 ATGTGA-TATGTGACTTCCGTATAAGACCATATCTGGGATATGACATCGGAGAG
* * *
87952999 -TGTGATATATG-CTACTGTATAAGACCATATCTGGGATATGACATC----A-
1 ATGTGATATGTGACTTCCGTATAAGACCATATCTGGGATATGACATCGGAGAG
* * * * * *
87953045 ATGAGATATGTGA-TT-CGTGTAAGACCATAGCTGGGTTATGGCATC--A-AT
1 ATGTGATATGTGACTTCCGTATAAGACCATATCTGGGATATGACATCGGAGAG
* * * *
87953093 ATGTGATATGTGA--TCCGTGTAATACCATAGCTGGGCTATG
1 ATGTGATATGTGACTTCCGTATAAGACCATATCTGGGATATG
87953133 GTATCGATAT
Statistics
Matches: 157, Mismatches: 18, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
46 25 0.16
47 48 0.31
48 40 0.25
49 1 0.01
50 1 0.01
52 1 0.01
53 35 0.22
54 6 0.04
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (53 bp):
ATGTGATATGTGACTTCCGTATAAGACCATATCTGGGATATGACATCGGAGAG
Found at i:87953120 original size:48 final size:47
Alignment explanation
Indices: 87952897--87953150 Score: 206
Period size: 48 Copynumber: 5.2 Consensus size: 47
87952887 CCATGGCAAC
* * *
87952897 ATGTGATATGTGATTTCCGTATAAGACCATAGTTGGGCTATGACATCGGAGAG
1 ATGTGATATGTGA--TCCGTATAAGACCATAGCTGGGATATGGCATC----AG
* *
87952950 ATGTGATTATGTGCTTCCGTATAAGACCATATCTGGGATATGGCATC-G
1 ATGTGA-TATGTG-ATCCGTATAAGACCATAGCTGGGATATGGCATCAG
* * * * * *
87952998 GTGTGATATATGCTACTGTATAAGACCATATCTGGGATATGACATCA-
1 ATGTGATATGTGAT-CCGTATAAGACCATAGCTGGGATATGGCATCAG
* * * * *
87953045 ATGAGATATGTGATTCGTGTAAGACCATAGCTGGGTTATGGCATCAAT
1 ATGTGATATGTGATCCGTATAAGACCATAGCTGGGATATGGCATC-AG
* * * * *
87953093 ATGTGATATGTGATCCGTGTAATACCATAGCTGGGCTATGGTATCGAT
1 ATGTGATATGTGATCCGTATAAGACCATAGCTGGGATATGGCATC-AG
87953141 ATGTGATATG
1 ATGTGATATG
87953151 GGATTATGTG
Statistics
Matches: 169, Mismatches: 26, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
46 26 0.15
47 45 0.27
48 58 0.34
53 34 0.20
54 6 0.04
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (47 bp):
ATGTGATATGTGATCCGTATAAGACCATAGCTGGGATATGGCATCAG
Found at i:87959071 original size:46 final size:46
Alignment explanation
Indices: 87959021--87959193 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
87959011 TGGTTGAGCA
*
87959021 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
87959067 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
87959114 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
87959160 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
87959194 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:87959177 original size:93 final size:93
Alignment explanation
Indices: 87959018--87959188 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
87959008 GGATGGTTGA
* *
87959018 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
87959083 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
87959111 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
87959176 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
87959189 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:87959455 original size:19 final size:20
Alignment explanation
Indices: 87959418--87959455 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
87959408 ATAAGGTGGT
87959418 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
87959438 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
87959456 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:87966646 original size:46 final size:46
Alignment explanation
Indices: 87966596--87966768 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
87966586 TGGTTGAGCA
*
87966596 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
87966642 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
87966689 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
87966735 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
87966769 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:87966752 original size:93 final size:93
Alignment explanation
Indices: 87966593--87966763 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
87966583 GGATGGTTGA
* *
87966593 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
87966658 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
87966686 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
87966751 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
87966764 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:87967029 original size:19 final size:20
Alignment explanation
Indices: 87966992--87967029 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
87966982 ATAAGGTGGT
87966992 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
87967012 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
87967030 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:87969499 original size:30 final size:30
Alignment explanation
Indices: 87969444--87969603 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
87969434 ATAGTGAATC
87969444 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
87969473 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
87969503 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
87969532 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
87969560 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
87969590 CGCACACTTAGTGC
1 CGCACACTTAGTGC
87969604 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:87969536 original size:59 final size:57
Alignment explanation
Indices: 87969444--87969603 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
87969434 ATAGTGAATC
*
87969444 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
87969503 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
87969560 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
87969604 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:87977392 original size:29 final size:29
Alignment explanation
Indices: 87977360--87977460 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
87977350 ATAGTGAATC
*
87977360 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
*
87977389 CGCACACTTAGTGCTATATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AACT
* * * *
87977417 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAACT
87977447 CGCACACTTAGTGC
1 CGCACACTTAGTGC
87977461 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 21 0.34
30 17 0.28
31 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAACT
Found at i:87977453 original size:30 final size:29
Alignment explanation
Indices: 87977359--87977460 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
87977349 TATAGTGAAT
* * *
87977359 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
87977388 TCGCACACTTAGTGCTATATAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
87977416 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
87977446 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
87977461 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:87980971 original size:45 final size:45
Alignment explanation
Indices: 87980907--87981000 Score: 188
Period size: 45 Copynumber: 2.1 Consensus size: 45
87980897 TAGTATATGT
87980907 ATGTGAAATATTATTTCGATACATGAGTTTTGCATTTGAGTGAAA
1 ATGTGAAATATTATTTCGATACATGAGTTTTGCATTTGAGTGAAA
87980952 ATGTGAAATATTATTTCGATACATGAGTTTTGCATTTGAGTGAAA
1 ATGTGAAATATTATTTCGATACATGAGTTTTGCATTTGAGTGAAA
87980997 ATGT
1 ATGT
87981001 ACTAAGTTTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.33, C:0.06, G:0.20, T:0.40
Consensus pattern (45 bp):
ATGTGAAATATTATTTCGATACATGAGTTTTGCATTTGAGTGAAA
Found at i:87981856 original size:39 final size:39
Alignment explanation
Indices: 87981802--87981941 Score: 208
Period size: 39 Copynumber: 3.5 Consensus size: 39
87981792 TAATGGAGAA
* *
87981802 TTATATCTGGCCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
87981841 TTATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
87981880 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
87981919 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
87981942 CATGCTTTGT
Statistics
Matches: 90, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 82 0.91
40 1 0.01
41 7 0.08
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:87986391 original size:33 final size:33
Alignment explanation
Indices: 87986350--87986416 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
87986340 TATAGGTAAG
87986350 TATTTATGTGGTGTTCCAATTGAACTTGTAAAT
1 TATTTATGTGGTGTTCCAATTGAACTTGTAAAT
87986383 TATTTATGTGGTGTTCCAATTGAACTTGTAAAT
1 TATTTATGTGGTGTTCCAATTGAACTTGTAAAT
87986416 T
1 T
87986417 CGGCCACATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.46
Consensus pattern (33 bp):
TATTTATGTGGTGTTCCAATTGAACTTGTAAAT
Found at i:87986717 original size:21 final size:21
Alignment explanation
Indices: 87986692--87986732 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
87986682 TATTGATTTA
87986692 GTAAATTAGTTTATGAAATTC
1 GTAAATTAGTTTATGAAATTC
87986713 GTAAATTAGTTTATGAAATT
1 GTAAATTAGTTTATGAAATT
87986733 AGAATATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (21 bp):
GTAAATTAGTTTATGAAATTC
Found at i:87987431 original size:39 final size:39
Alignment explanation
Indices: 87987377--87987507 Score: 192
Period size: 39 Copynumber: 3.4 Consensus size: 39
87987367 GCATGATATT
87987377 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
87987416 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
** * **
87987455 TGGAAACATATCCAAACTTTAGGTCCATAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
* *
87987494 TAG-AATATATCCGG
1 TGGAAACATATCCGG
87987508 CCCTAAAGTC
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
38 8 0.10
39 75 0.90
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (39 bp):
TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
Found at i:87987533 original size:78 final size:78
Alignment explanation
Indices: 87987377--87987526 Score: 185
Period size: 78 Copynumber: 1.9 Consensus size: 78
87987367 GCATGATATT
** * * * * *
87987377 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAACATATCCGGACTTGAGGTCC
1 TGGAAACATATCCAAACTTGAGGTCCACAGGCTACGTGCTAGAAACATATCCGGACCTAAAGTCC
87987442 GCAGGCTACGTGC
66 GCAGGCTACGTGC
* * * *
87987455 TGGAAACATATCCAAACTTTAGGTCCATAGGCTACGTGCTAG-AATATATCCGGCCCTAAAGTCC
1 TGGAAACATATCCAAACTTGAGGTCCACAGGCTACGTGCTAGAAACATATCCGGACCTAAAGT-C
87987519 CGCAGGCT
65 CGCAGGCT
87987527 TTGTGCTAGT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
77 15 0.25
78 45 0.75
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (78 bp):
TGGAAACATATCCAAACTTGAGGTCCACAGGCTACGTGCTAGAAACATATCCGGACCTAAAGTCC
GCAGGCTACGTGC
Found at i:87994812 original size:45 final size:44
Alignment explanation
Indices: 87994765--87995004 Score: 242
Period size: 44 Copynumber: 5.5 Consensus size: 44
87994755 TATGTGTTAT
* *
87994765 CATGTAATACCACGTCTGGGACATTGGCATTGACTTATGATTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTA
*
87994809 TCATGTAATACCACGTCTGGGACATTGGCATCGACTTATGATTTA
1 -CATGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTA
* * * *
87994854 CGTGTAAGACCACATCTGGGACGTTGGCATCGACTTGTGATTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTA
* *
87994898 CGTGTAAGACCACGTCTGGGACGTTGGCATCGTAC-T-TGATTT-
1 CATGTAAGACCACGTCTGGGACATTGGCATCG-ACTTATGATTTA
** * * *
87994940 TGTGTAAGACC-CTGTCTGGGGC-TATGACATCGA-TATTTGA-TTA
1 CATGTAAGACCAC-GTCTGGGACAT-TGGCATCGACT-TATGATTTA
* *
87994983 CATGTAAGACCATGTCTAGGAC
1 CATGTAAGACCACGTCTGGGAC
87995005 GTTAGCATTG
Statistics
Matches: 172, Mismatches: 15, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
41 3 0.02
42 28 0.16
43 25 0.15
44 71 0.41
45 45 0.26
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.32
Consensus pattern (44 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTA
Found at i:87994875 original size:44 final size:44
Alignment explanation
Indices: 87994767--87994959 Score: 250
Period size: 44 Copynumber: 4.4 Consensus size: 44
87994757 TGTGTTATCA
* * *
87994767 TGTAATACCACGTCTGGGACATTGGCATTGACTTATGATTTATCA
1 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTA-CG
*
87994812 TGTAATACCACGTCTGGGACATTGGCATCGACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACG
* * *
87994856 TGTAAGACCACATCTGGGACGTTGGCATCGACTTGTGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACG
* *
87994900 TGTAAGACCACGTCTGGGACGTTGGCATCGTAC-T-TGATTT-TG
1 TGTAAGACCACGTCTGGGACATTGGCATCG-ACTTATGATTTACG
87994942 TGTAAGACC-CTGTCTGGG
1 TGTAAGACCAC-GTCTGGG
87994960 GCTATGACAT
Statistics
Matches: 138, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
41 1 0.01
42 17 0.12
43 6 0.04
44 71 0.51
45 43 0.31
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACG
Found at i:87997858 original size:12 final size:12
Alignment explanation
Indices: 87997841--87997867 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
87997831 AAAAGTAAAG
87997841 AATGAATAAAAC
1 AATGAATAAAAC
87997853 AATGAATAAAAC
1 AATGAATAAAAC
87997865 AAT
1 AAT
87997868 TTCATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.19
Consensus pattern (12 bp):
AATGAATAAAAC
Found at i:88006144 original size:13 final size:13
Alignment explanation
Indices: 88006126--88006152 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
88006116 AAGTAAGTGA
88006126 TCTTGATGATTTT
1 TCTTGATGATTTT
88006139 TCTTGATGATTTT
1 TCTTGATGATTTT
88006152 T
1 T
88006153 GTACTTTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.07, G:0.15, T:0.63
Consensus pattern (13 bp):
TCTTGATGATTTT
Found at i:88015753 original size:55 final size:55
Alignment explanation
Indices: 88015666--88015805 Score: 167
Period size: 55 Copynumber: 2.5 Consensus size: 55
88015656 TGCGACATGG
* * * *
88015666 CCGTGGGC-GAACCTGCCAAAATAACACGGGCGTGCGACACACCCGTGCCTTGAAC
1 CCGT-GGCTGAACCTGTCAAATTAACACAGGCGTGCGACACACCCGTGCCTAGAAC
* * * *
88015721 CCGTGGCTGAACCTGTCAAATTAACACAGGCGTGCGACACGCCCTTGTCTAGCAC
1 CCGTGGCTGAACCTGTCAAATTAACACAGGCGTGCGACACACCCGTGCCTAGAAC
*
88015776 CCGTGG-TCGAACCTGTTAAATTAACACAGG
1 CCGTGGCT-GAACCTGTCAAATTAACACAGG
88015806 TGTGGGCCCA
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
54 4 0.05
55 70 0.95
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (55 bp):
CCGTGGCTGAACCTGTCAAATTAACACAGGCGTGCGACACACCCGTGCCTAGAAC
Found at i:88022719 original size:17 final size:17
Alignment explanation
Indices: 88022691--88022732 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
88022681 TAATAGATTA
*
88022691 TATAAT-TAAAATATGT
1 TATAATATAAAATAAGT
88022707 TATAATATAAAATAAGT
1 TATAATATAAAATAAGT
88022724 TATAATATA
1 TATAATATA
88022733 TTAAGTGGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (17 bp):
TATAATATAAAATAAGT
Found at i:88023938 original size:24 final size:24
Alignment explanation
Indices: 88023911--88024022 Score: 113
Period size: 24 Copynumber: 4.7 Consensus size: 24
88023901 GAAATGATTT
88023911 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
*
88023935 TGGCACTATGTGTGCTG-ATTTGTA
1 TGGCACTATGTGTGC-GAATTTGAA
* *
88023959 TGGCACTATGTGTGCGGATTGGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
88023983 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
88024008 -GGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
88024023 GGTTAACATG
Statistics
Matches: 71, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
23 1 0.01
24 67 0.94
25 3 0.04
ACGTcount: A:0.23, C:0.12, G:0.29, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:88024023 original size:48 final size:48
Alignment explanation
Indices: 88023912--88024023 Score: 136
Period size: 48 Copynumber: 2.3 Consensus size: 48
88023902 AAATGATTTT
* * * * ** *
88023912 GGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCTGATTTGTAT
1 GGCACTATGTGTGCGGATTGGAATGGCAATATGTATGCTGATTACTAA
*
88023960 GGCACTATGTGTGCGGATTGGAATGTCAATATGTATG-TGAATTACTAA
1 GGCACTATGTGTGCGGATTGGAATGGCAATATGTATGCTG-ATTACTAA
88024008 GGCACTATGTGTGCGG
1 GGCACTATGTGTGCGG
88024024 GTTAACATGG
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 2 0.04
48 53 0.96
ACGTcount: A:0.23, C:0.12, G:0.30, T:0.34
Consensus pattern (48 bp):
GGCACTATGTGTGCGGATTGGAATGGCAATATGTATGCTGATTACTAA
Found at i:88024745 original size:39 final size:39
Alignment explanation
Indices: 88024698--88024888 Score: 229
Period size: 39 Copynumber: 4.9 Consensus size: 39
88024688 ATTTGATGTA
*
88024698 TATCCGGACTTAAGGTCCGCAGGCTTCGTGATGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
88024737 TATTCGGACTTAAGGTCTGCAGGCTTCCTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* ** * *
88024776 TATCCGGGCTTAAAGACCCGCAGGCTTCTTGCTAGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * *
88024816 TATCCGGACTTAAGATCTGCAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* *
88024855 TATCCGGACTTAAGGTCCGTAGGCTTCGTACTGG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGG
88024889 TACTATATCT
Statistics
Matches: 128, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 95 0.74
40 33 0.26
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.30
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:88024828 original size:79 final size:79
Alignment explanation
Indices: 88024696--88024867 Score: 229
Period size: 79 Copynumber: 2.2 Consensus size: 79
88024686 ATATTTGATG
** * * *
88024696 TATATCCGGACTT-AAGGTCCGCAGGCTTCGTGATGGAATTGTATTCGGACTTAAGGTCTGCAGG
1 TATATCCGGACTTAAAGACCCGCAGGCTTCGTGATAGAATTGTATCCGGACTTAAGATCTGCAGG
*
88024760 CTTCCTGCTGGAAT
66 CTTCCTGCTGGAAC
* * * *
88024774 TGTATCCGGGCTTAAAGACCCGCAGGCTTCTTGCTAGAATTGTATCCGGACTTAAGATCTGCAGG
1 TATATCCGGACTTAAAGACCCGCAGGCTTCGTGATAGAATTGTATCCGGACTTAAGATCTGCAGG
* *
88024839 CTTCGTGCTGGTAC
66 CTTCCTGCTGGAAC
88024853 TATATCCGGACTTAA
1 TATATCCGGACTTAA
88024868 GGTCCGTAGG
Statistics
Matches: 79, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
78 11 0.14
79 68 0.86
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (79 bp):
TATATCCGGACTTAAAGACCCGCAGGCTTCGTGATAGAATTGTATCCGGACTTAAGATCTGCAGG
CTTCCTGCTGGAAC
Found at i:88024889 original size:39 final size:39
Alignment explanation
Indices: 88024696--88024920 Score: 216
Period size: 39 Copynumber: 5.7 Consensus size: 39
88024686 ATATTTGATG
*
88024696 TATATCCGGACTTAAGGTCCGCAGGCTTCGTGATGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
* * * *
88024735 TGTATTCGGACTTAAGGTCTGCAGGCTTCCTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
* * ** * *
88024774 TGTATCCGGGCTTAAAGACCCGCAGGCTTCTTGCTAGAAT
1 TATATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAAT
* * * * *
88024814 TGTATCCGGACTTAAGATCTGCAGGCTTCGTGCTGGTAC
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
* * * *
88024853 TATATCCGGACTTAAGGTCCGTAGGCTTCGTACTGGTAC
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
* * * *
88024892 TATATCTGGGCTTAAAGTCCCGTAGGCTT
1 TATATCCGGACTTAAGGT-CCGCAGGCTT
88024921 TGTGTTGGTG
Statistics
Matches: 157, Mismatches: 27, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 114 0.73
40 43 0.27
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
Found at i:88024906 original size:118 final size:118
Alignment explanation
Indices: 88024698--88024920 Score: 293
Period size: 118 Copynumber: 1.9 Consensus size: 118
88024688 ATTTGATGTA
* * * * *
88024698 TATCCGGACTTAAGGTCCGCAGGCTTCGTGATGGAATTGTATTCGGACTTAAGGTCTGCAGGCTT
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGATGGAACTATATCCGGACTTAAGGTCCGCAGGCTT
* * *
88024763 CCTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCTTGCTAGAATTG
66 CCTACTGGAACTATATCCGGGCTTAAAGACCCGCAGGCTTCTTGCTAGAATTG
* * * *
88024816 TATCCGGACTTAAGATCTGCAGGCTTCGTGCTGGTACTATATCCGGACTTAAGGTCCGTAGGCTT
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGATGGAACTATATCCGGACTTAAGGTCCGCAGGCTT
* * * * *
88024881 CGTACTGGTACTATATCTGGGCTTAAAGTCCCGTAGGCTT
66 CCTACTGGAACTATATCCGGGCTTAAAGACCCGCAGGCTT
88024921 TGTGTTGGTG
Statistics
Matches: 88, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
118 88 1.00
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.30
Consensus pattern (118 bp):
TATCCGGACTTAAGATCCGCAGGCTTCGTGATGGAACTATATCCGGACTTAAGGTCCGCAGGCTT
CCTACTGGAACTATATCCGGGCTTAAAGACCCGCAGGCTTCTTGCTAGAATTG
Found at i:88035551 original size:70 final size:71
Alignment explanation
Indices: 88035400--88035562 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
88035390 GAGATGTATC
88035400 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
88035465 AGGACA
66 AGGACA
88035471 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
88035535 CGGACA
66 AGGACA
88035541 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
88035563 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:88043071 original size:70 final size:71
Alignment explanation
Indices: 88042921--88043083 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
88042911 GAGATGTATC
88042921 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
88042986 AGGACA
66 AGGACA
88042992 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
88043056 AGGACA
66 AGGACA
88043062 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
88043084 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:88046788 original size:39 final size:40
Alignment explanation
Indices: 88046611--88046792 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
88046601 CCGCACCAAG
* * * * * * *
88046611 GCCTACGGGACTTA-CCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
88046650 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
88046690 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
88046730 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
88046769 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
88046793 CATTCAATTT
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 43 0.35
40 77 0.63
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:88054774 original size:40 final size:40
Alignment explanation
Indices: 88054715--88054883 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
88054705 CGGGACTTTA
* * *
88054715 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
88054755 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
88054795 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
88054835 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
88054875 CCCGGATAT
1 CCCGGATAT
88054884 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:88060318 original size:26 final size:26
Alignment explanation
Indices: 88060268--88060351 Score: 80
Period size: 26 Copynumber: 3.3 Consensus size: 26
88060258 CTTGATCAAT
* * *
88060268 GGCTCTTCATGAGCTTCCCGTTTAAA
1 GGCTCTTCGTGAGCTTCCTGATTAAA
88060294 GGCTCTTCGTGAGCTTCCTGATTAAA
1 GGCTCTTCGTGAGCTTCCTGATTAAA
* * * * * *
88060320 AGTTCTTTGTGAACTTCCTAATTACA
1 GGCTCTTCGTGAGCTTCCTGATTAAA
88060346 -GCTCTT
1 GGCTCTT
88060352 ACGAGTTTCC
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
25 5 0.10
26 43 0.90
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCTGATTAAA
Found at i:88066583 original size:48 final size:48
Alignment explanation
Indices: 88066486--88066901 Score: 319
Period size: 48 Copynumber: 8.6 Consensus size: 48
88066476 GTGTGATAGG
* *
88066486 GTAAGACCATGTCTGGGACATGGCATTGGCCAC--ATTATGAGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCC-CTGA-TATGTGAGCCAGT
* *** * *
88066534 GTATGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGTGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCCTGATATGTGAGCCAGT
*
88066582 GTAAGACCATGTCTGGGACATGGCATCGGCCAC--ATTATGAGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCC-CTGA-TATGTGAGCCAGT
* * ** *
88066630 CTAAGACCATGTCTGGAACATGGCATCGGCGTTGATATGTG-TCCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCCTGATATGTGAGCC-AGT
* * * * * * *
88066678 TTAAGACTATATTTGTGACATGGCATCGACCAC--ATTATGAGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCC-CTGA-TATGTGAGCCAGT
** * * * *
88066726 GTAAGACCATGTCTAAGACATGGCATCGACCAC-AATGTGCGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCC-CTGATATGTGAGCCAGT
* * ** * * * *
88066774 GTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATATGTGTCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCCTGATATGTGAGCCAGT
* *
88066822 GTAAGACCATGTCTGGGACATGGCATTGGCACC-GATATGTGAGAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGC-CCTGATATGT--GAGCCAGT
* *
88066872 GTAAGAGCATGTCCGGGACATGGCATCGGC
1 GTAAGACCATGTCTGGGACATGGCATCGGC
88066902 ATTTTACCCT
Statistics
Matches: 286, Mismatches: 67, Indels: 28
0.75 0.18 0.07
Matches are distributed among these distances:
47 4 0.01
48 245 0.86
49 5 0.02
50 32 0.11
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCCCTGATATGTGAGCCAGT
Found at i:88066638 original size:96 final size:96
Alignment explanation
Indices: 88066468--88066901 Score: 476
Period size: 96 Copynumber: 4.5 Consensus size: 96
88066458 AAGACATTTG
* * *
88066468 GTTGATATGTGTGATAGGGTAAGACCATGTCTGGGACATGGCATTGGCCACATTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
* *
88066533 TGTATGACCATGTCTGGGACATGGCATCGGT
66 TGTAAGACCATGTCTGGGACATGGCATCGGC
88066564 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
* *
88066629 TCTAAGACCATGTCTGGAACATGGCATCGGC
66 TGTAAGACCATGTCTGGGACATGGCATCGGC
* * * * * * *
88066660 GTTGATATGTGTCCTAGTTTAAGACTATATTTGTGACATGGCATCGACCACATTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
** *
88066725 TGTAAGACCATGTCTAAGACATGGCATCGAC
66 TGTAAGACCATGTCTGGGACATGGCATCGGC
**** * * * * * * ** * *
88066756 CACAATGTGCGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGG-CATTGTTAT-ATGTGTC
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CATTATGA-GAGCC
*
88066819 AGTGTAAGACCATGTCTGGGACATGGCATTGGC
64 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
*** * * *
88066852 ACCGATATGTGAGAGCTAGTGTAAGAGCATGTCCGGGACATGGCATCGGC
1 GTTGATATGT--GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
88066902 ATTTTACCCT
Statistics
Matches: 281, Mismatches: 52, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
95 3 0.01
96 246 0.88
98 32 0.11
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (96 bp):
GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
TGTAAGACCATGTCTGGGACATGGCATCGGC
Found at i:88066747 original size:144 final size:145
Alignment explanation
Indices: 88066579--88066901 Score: 402
Period size: 144 Copynumber: 2.2 Consensus size: 145
88066569 TATGTGTGCT
*
88066579 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTCTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTCTAAGACCATGTCT
* * * * *
88066644 GGAACATGGCATCGGCGTTG-ATATGTGTCCTAGTTTAAGACTATATTTGTGACATGGCA-TCG-
66 GGAACATGGCATCGGCATTGTATATGTGT-C-AGTGTAAGACCATATCTGGGACATGGCATTCGC
88066706 ACCACAT-TATGAGAGCC
129 ACC-CATATATGAGAGCC
** * * * * *
88066723 AGTGTAAGACCATGTCTAAGACATGGCATCGACCACAATGTGCGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTCTAAGACCATGTCT
* *
88066788 GGAACATGGCATCGGCATTGTTATATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCA
66 GGAACATGGCATCGGCATTG-TATATGTGTCAGTGTAAGACCATATCTGGGACATGGCATTCGCA
* * *
88066853 CCGATATGTGAGAGCT
130 CCCATATATGAGAGCC
* *
88066869 AGTGTAAGAGCATGTCCGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
88066902 ATTTTACCCT
Statistics
Matches: 151, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
144 99 0.66
145 5 0.03
146 47 0.31
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (145 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTCTAAGACCATGTCT
GGAACATGGCATCGGCATTGTATATGTGTCAGTGTAAGACCATATCTGGGACATGGCATTCGCAC
CCATATATGAGAGCC
Found at i:88066897 original size:98 final size:96
Alignment explanation
Indices: 88066722--88066904 Score: 242
Period size: 98 Copynumber: 1.9 Consensus size: 96
88066712 TTATGAGAGC
* *
88066722 CAGTGTAAGACCATGTCTAAGACATGGCATCGACCACAATGTGCGAGCCAGTGTAAGACCATGTT
1 CAGTGTAAGACCATGTCTAAGACATGGCATCGACCACAATGTGAGAGCCAGTGTAAGACCATGTC
*
88066787 TGGAACATGGCATCGGCATTGTTATATGTGT
66 CGGAACATGGCATCGGCATTGTTATATGTGT
** * * * *
88066818 CAGTGTAAGACCATGTCTGGGACATGGCATTGGCACCGA-TATGTGAGAGCTAGTGTAAGAGCAT
1 CAGTGTAAGACCATGTCTAAGACATGGCA-TCG-ACC-ACAATGTGAGAGCCAGTGTAAGACCAT
*
88066882 GTCCGGGACATGGCATCGGCATT
63 GTCCGGAACATGGCATCGGCATT
88066905 TTACCCTTTT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
96 27 0.36
97 2 0.03
98 44 0.59
99 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (96 bp):
CAGTGTAAGACCATGTCTAAGACATGGCATCGACCACAATGTGAGAGCCAGTGTAAGACCATGTC
CGGAACATGGCATCGGCATTGTTATATGTGT
Found at i:88071056 original size:43 final size:43
Alignment explanation
Indices: 88071001--88071342 Score: 501
Period size: 43 Copynumber: 8.0 Consensus size: 43
88070991 ATATCGTACA
* * *
88071001 ATGCCAACGTCCCAGACGTGGTCTTACATGCAATCACATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
88071044 ATGCC-ACTGTCCCAGATAG-GGTCTTACACATAATCACATATCG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGTAATCACATATCG
** *
88071087 ATGCC-ACTGTCCCAGACAAGGTCTTACATGTAATCACATATCG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACACGTAATCACATATCG
88071130 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
88071173 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
88071216 ATGCCAACGTCCCAGATGTGGTCTTACACATAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
88071259 ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
88071302 ATGCCAACGTCCCAGATGTGGTCTTACATGTAATCATATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
88071343 ACATCCATGT
Statistics
Matches: 272, Mismatches: 23, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
42 2 0.01
43 267 0.98
44 3 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:88077190 original size:48 final size:48
Alignment explanation
Indices: 88077116--88077434 Score: 286
Period size: 48 Copynumber: 6.6 Consensus size: 48
88077106 TGTGTGCTAA
* * *
88077116 TGTAAGACCATGTCTCGGACACGGCATTGGCCACATTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
* * **** * * * *
88077164 TGTAAGACAATATCTGGGACATGGCATCGGTGTTGA-TATGTGTGCTAC
1 TGTAAGACCATGTCTGGGACATGGCATCGG-CCACATTATGAGAGCCAG
88077212 TGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
* ** * *
88077260 TGTAAAACCATGTCTAAGACATGGCATCGGCCACAATATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
* * * * ** * *
88077308 TGTAAGACCATGTTTGGAACATGGCATCAG-TATTGTTAT-ATGTGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCA-CATTATGA-GAGCCAG
* *
88077356 TGTAAGACCATGTATGGGACATGGCGTCGG-CATCGATGTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCA-C-AT-TATGAGAGCCAG
* *
88077406 TGTAAGACCATGTCCGGGACATGGTATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
88077435 ATATTTTACC
Statistics
Matches: 210, Mismatches: 54, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
47 2 0.01
48 172 0.82
49 2 0.01
50 33 0.16
51 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
Found at i:88077376 original size:144 final size:146
Alignment explanation
Indices: 88077116--88077419 Score: 402
Period size: 144 Copynumber: 2.1 Consensus size: 146
88077106 TGTGTGCTAA
** * *
88077116 TGTAAGACCATGTCTCGGACACGGCATTGGCCACATTATGAGAGCCAGTGTAAGACAATATCTGG
1 TGTAAGACCATGTCTAAGACACGGCATCGGCCACAATATGAGAGCCAGTGTAAGACAATATCTGG
* * * *
88077181 GACATGGCATCGGTGTTGATATGTGTGCTACTGTAAGACCATGTCTGGGACATGGCATCGGCCA-
66 AACATGGCATCAGTATTGATATGTGTGCTACTGTAAGACCATGTATGGGACATGGCATCGG-CAT
88077245 C-AT-TATGAGAGCCAG
130 CGATGTATGAGAGCCAG
* * * * * *
88077260 TGTAAAACCATGTCTAAGACATGGCATCGGCCACAATATGTGAGCCAGTGTAAGACCATGTTTGG
1 TGTAAGACCATGTCTAAGACACGGCATCGGCCACAATATGAGAGCCAGTGTAAGACAATATCTGG
* *
88077325 AACATGGCATCAGTATTGTTATATGTGT-C-AGTGTAAGACCATGTATGGGACATGGCGTCGGCA
66 AACATGGCATCAGTATTG--ATATGTGTGCTACTGTAAGACCATGTATGGGACATGGCATCGGCA
88077388 TCGATGTATGAGAGCCAG
129 TCGATGTATGAGAGCCAG
88077406 TGTAAGACCATGTC
1 TGTAAGACCATGTC
88077420 CGGGACATGG
Statistics
Matches: 138, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
143 2 0.01
144 100 0.72
145 3 0.02
146 33 0.24
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (146 bp):
TGTAAGACCATGTCTAAGACACGGCATCGGCCACAATATGAGAGCCAGTGTAAGACAATATCTGG
AACATGGCATCAGTATTGATATGTGTGCTACTGTAAGACCATGTATGGGACATGGCATCGGCATC
GATGTATGAGAGCCAG
Found at i:88079997 original size:56 final size:56
Alignment explanation
Indices: 88079903--88080113 Score: 296
Period size: 56 Copynumber: 3.8 Consensus size: 56
88079893 GAAGTATATA
* ** * * * *
88079903 TGGCATCGATATGGGACTATAATATATGTGTACGAGTAAGTCAATGTTTAATACGT
1 TGGCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGACCACGTTTAATACGT
* * *
88079959 TGGCATCGATATGTGACTCCGATATATGCGTGCAAGTAAGACCACGTTTAATACGT
1 TGGCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGACCACGTTTAATACGT
*
88080015 TGGCATCAATATGTGACTCCAATATATGTGTGCGAGTAAGACCACGTTTAATACGT
1 TGGCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGACCACGTTTAATACGT
* * *
88080071 TGGCATCGATATATGACTCCGATATATGTGTACGAGTAAGACC
1 TGGCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGACC
88080114 CTGTCTGGGG
Statistics
Matches: 137, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 137 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (56 bp):
TGGCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGACCACGTTTAATACGT
Found at i:88092987 original size:15 final size:14
Alignment explanation
Indices: 88092963--88092992 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
88092953 ACCAAAACCC
88092963 AAAAAAGAAAGAAA
1 AAAAAAGAAAGAAA
88092977 AAAAAAGGAAAGAAA
1 AAAAAA-GAAAGAAA
88092992 A
1 A
88092993 CCTAGTTCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAGAAA
Found at i:88094048 original size:56 final size:56
Alignment explanation
Indices: 88093962--88094172 Score: 271
Period size: 56 Copynumber: 3.8 Consensus size: 56
88093952 GAAGTATATG
* ** * *
88093962 TGGCATCGATATGTGACTCTAATATATGTGTATGAGTAATTCCAAGTTTAATACGT
1 TGGCATCGATATGTGACTCTAATATATGTGTACGAGTAAGACCACGTTTAATACAT
* * *
88094018 TGGCATCAATATGTGACTCTAATATATGTGTGCGAGTAAGAGCACGTTTAATACAT
1 TGGCATCGATATGTGACTCTAATATATGTGTACGAGTAAGACCACGTTTAATACAT
* *
88094074 TGGCATCGATATGTGACT-TCGATATATGTGTGCGAGTAAGACCACGTTTAATACAT
1 TGGCATCGATATGTGACTCT-AATATATGTGTACGAGTAAGACCACGTTTAATACAT
* * ** *
88094130 TGGCATCGATATATAACTCCGATATATGTGTACGAGTGAGACC
1 TGGCATCGATATGTGACTCTAATATATGTGTACGAGTAAGACC
88094173 CTATTTGGGG
Statistics
Matches: 137, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
55 1 0.01
56 136 0.99
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (56 bp):
TGGCATCGATATGTGACTCTAATATATGTGTACGAGTAAGACCACGTTTAATACAT
Found at i:88094190 original size:112 final size:112
Alignment explanation
Indices: 88093961--88094201 Score: 252
Period size: 112 Copynumber: 2.2 Consensus size: 112
88093951 GGAAGTATAT
* ** *
88093961 GTGGCATCGATATGTGACTCTAATATATGTGTATGAGTAATTCCAAGTTTAATACGTTGGCATCA
1 GTGGCATCGATATGTGACTCTAATATATGTGTACGAGTAAGACCAAGTTTAATACATTGGCATCA
* * * * * *
88094026 ATATGTGACTCTAATATATGTGTGCGAGTAAGAGCACGTTTAATACA
66 ATATATAACTCCAATATATGTGTACGAGTAAGAGCACATTTAAGACA
* * * *
88094073 TTGGCATCGATATGTGACT-TCGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATC
1 GTGGCATCGATATGTGACTCT-AATATATGTGTACGAGTAAGACCAAGTTTAATACATTGGCATC
* * * * ** *
88094137 GATATATAACTCCGATATATGTGTACGAGTGAGA-CCCTATTTGGGGCA
65 AATATATAACTCCAATATATGTGTACGAGTAAGAGCAC-ATTTAAGACA
*
88094185 GTGGCATTGATATGTGA
1 GTGGCATCGATATGTGA
88094202 TTACATGTAA
Statistics
Matches: 104, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
111 3 0.03
112 101 0.97
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (112 bp):
GTGGCATCGATATGTGACTCTAATATATGTGTACGAGTAAGACCAAGTTTAATACATTGGCATCA
ATATATAACTCCAATATATGTGTACGAGTAAGAGCACATTTAAGACA
Done.