Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 29 of 770
Found at i:8440753 original size:23 final size:23
Alignment explanation
Indices: 8440723--8440766 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
8440713 TTGAATAGTT
*
8440723 AAATTTTGAGGTGATTAAATTGA
1 AAATTTTGAGGTAATTAAATTGA
*
8440746 AAATTTTGAGTTAATTAAATT
1 AAATTTTGAGGTAATTAAATT
8440767 AAGTTATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (23 bp):
AAATTTTGAGGTAATTAAATTGA
Found at i:8441229 original size:28 final size:28
Alignment explanation
Indices: 8441197--8441259 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
8441187 TCCCGTATTA
8441197 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * * *
8441225 ATGGGATATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
8441253 ATGGGGT
1 ATGGGGT
8441260 TGATAATGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:8446632 original size:28 final size:28
Alignment explanation
Indices: 8446601--8446663 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
8446591 TCCCATATTA
*
8446601 ATGGGGTATAGGAAGAGTCTCATAACTT
1 ATGGGGTACAGGAAGAGTCTCATAACTT
* *
8446629 ATGGGGTACAGGAAGAGTTTTATAACTT
1 ATGGGGTACAGGAAGAGTCTCATAACTT
8446657 ATGGGGT
1 ATGGGGT
8446664 TGATAATGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (28 bp):
ATGGGGTACAGGAAGAGTCTCATAACTT
Found at i:8447535 original size:24 final size:24
Alignment explanation
Indices: 8447508--8447585 Score: 90
Period size: 23 Copynumber: 3.2 Consensus size: 24
8447498 CCGATATATT
8447508 AGCTCATAAGAGCTTACTGTTCTC
1 AGCTCATAAGAGCTTACTGTTCTC
*
8447532 AGCTCGTCAA-AGCTTACTG-TCTC
1 AGCTCAT-AAGAGCTTACTGTTCTC
*
8447555 AACTCA-ATAGAGCTTACTGTTCATC
1 AGCTCATA-AGAGCTTACTGTTC-TC
8447580 AGCTCA
1 AGCTCA
8447586 GGAGGAGCTT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
21 1 0.02
22 1 0.02
23 17 0.38
24 17 0.38
25 9 0.20
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (24 bp):
AGCTCATAAGAGCTTACTGTTCTC
Found at i:8451493 original size:26 final size:26
Alignment explanation
Indices: 8451463--8451517 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
8451453 TAAGTTATAT
8451463 GTATGTTTTGAATCGTAAATTAAATA
1 GTATGTTTTGAATCGTAAATTAAATA
*
8451489 GTATGTTTTGAATGGTAAATTAAATA
1 GTATGTTTTGAATCGTAAATTAAATA
8451515 GTA
1 GTA
8451518 AGATTTGCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.38, C:0.02, G:0.18, T:0.42
Consensus pattern (26 bp):
GTATGTTTTGAATCGTAAATTAAATA
Found at i:8451524 original size:26 final size:26
Alignment explanation
Indices: 8451469--8451524 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
8451459 ATATGTATGT
* *
8451469 TTTGAATCGTAAATTAAATAGTATGT
1 TTTGAATCGTAAATTAAATAGTAAGA
*
8451495 TTTGAATGGTAAATTAAATAGTAAGA
1 TTTGAATCGTAAATTAAATAGTAAGA
8451521 TTTG
1 TTTG
8451525 CTTATTATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.39, C:0.02, G:0.18, T:0.41
Consensus pattern (26 bp):
TTTGAATCGTAAATTAAATAGTAAGA
Found at i:8451722 original size:2 final size:2
Alignment explanation
Indices: 8451715--8451755 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
8451705 GGTCATTTTG
8451715 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8451756 GTTTAGTAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8456757 original size:57 final size:57
Alignment explanation
Indices: 8456669--8456776 Score: 189
Period size: 57 Copynumber: 1.9 Consensus size: 57
8456659 CCTAAAAAAC
* *
8456669 TTATAATTTTACAGCGGAACTCTTTAAAAGTTATATTTTTGAAAACACAATTTTTTT
1 TTATAACTTTACAGCGAAACTCTTTAAAAGTTATATTTTTGAAAACACAATTTTTTT
*
8456726 TTATAACTTTGCAGCGAAACTCTTTAAAAGTTATATTTTTGAAAACACAAT
1 TTATAACTTTACAGCGAAACTCTTTAAAAGTTATATTTTTGAAAACACAAT
8456777 GTGTTATTTG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (57 bp):
TTATAACTTTACAGCGAAACTCTTTAAAAGTTATATTTTTGAAAACACAATTTTTTT
Found at i:8460328 original size:91 final size:91
Alignment explanation
Indices: 8460200--8460383 Score: 314
Period size: 91 Copynumber: 2.0 Consensus size: 91
8460190 CAACTTTTCT
* * *
8460200 AAAGACAAAAGTTTTTTATAACACGAACGATTTTCCTAAAACATGTGTTTTCCAAAGCTTCCGCT
1 AAAGACAAAAGTTTTTCATAACACAAACGATTCTCCTAAAACATGTGTTTTCCAAAGCTTCCGCT
8460265 AAAAAGAGATGATTTTAGACTTAACG
66 AAAAAGAGATGATTTTAGACTTAACG
* * *
8460291 AAAGACAAAAGTTTTTCATAACACAAATGGTTCTCCTAAAATATGTGTTTTCCAAAGCTTCCGCT
1 AAAGACAAAAGTTTTTCATAACACAAACGATTCTCCTAAAACATGTGTTTTCCAAAGCTTCCGCT
8460356 AAAAAGAGATGATTTTAGACTTAACG
66 AAAAAGAGATGATTTTAGACTTAACG
8460382 AA
1 AA
8460384 TAACCGGTGG
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
91 87 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.30
Consensus pattern (91 bp):
AAAGACAAAAGTTTTTCATAACACAAACGATTCTCCTAAAACATGTGTTTTCCAAAGCTTCCGCT
AAAAAGAGATGATTTTAGACTTAACG
Found at i:8460938 original size:12 final size:12
Alignment explanation
Indices: 8460921--8460953 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
8460911 GACGGGGTAC
8460921 TAGAGGCCGAGG
1 TAGAGGCCGAGG
8460933 TAGAGGCCGAGG
1 TAGAGGCCGAGG
8460945 TAGAGGCCG
1 TAGAGGCCG
8460954 TAGAGGAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.18, G:0.48, T:0.09
Consensus pattern (12 bp):
TAGAGGCCGAGG
Found at i:8463085 original size:59 final size:59
Alignment explanation
Indices: 8463014--8463126 Score: 183
Period size: 59 Copynumber: 1.9 Consensus size: 59
8463004 ACTCGATATG
*
8463014 GACATTACGAGTTCCTAGTTATGCCCTTT-GGTTTAACTAATACACCAGTGGCATGTATC
1 GACATTACGAGTTCCTAGTTATG-CCTTTGGGTTTAACTAATACACCAGTAGCATGTATC
* *
8463073 GACATTACGAGTTCCTAGTTATGCCTTTGGGTTTGACTAATACACTAGTAGCAT
1 GACATTACGAGTTCCTAGTTATGCCTTTGGGTTTAACTAATACACCAGTAGCAT
8463127 TTACGGACTT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
58 5 0.10
59 45 0.90
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (59 bp):
GACATTACGAGTTCCTAGTTATGCCTTTGGGTTTAACTAATACACCAGTAGCATGTATC
Found at i:8466554 original size:17 final size:19
Alignment explanation
Indices: 8466527--8466566 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
8466517 TAGACTGAAT
8466527 TGGGCCGTGT-GGACCACA
1 TGGGCCGTGTGGGACCACA
*
8466545 TGGG-CGTGTGGGTCCACA
1 TGGGCCGTGTGGGACCACA
8466563 TGGG
1 TGGG
8466567 TAGTCTACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.12, C:0.23, G:0.45, T:0.20
Consensus pattern (19 bp):
TGGGCCGTGTGGGACCACA
Found at i:8466647 original size:66 final size:66
Alignment explanation
Indices: 8466524--8466654 Score: 156
Period size: 66 Copynumber: 2.0 Consensus size: 66
8466514 GGCTAGACTG
* * * * * *
8466524 AATTGGGCCGTGTGGACCACATGGGCGTGTGGGTCCACATGGGTAGTCTACACGGGCGTGTAAGC
1 AATTGGGCCGTGTGGACCACACGGGCGTGTAGGCCCACACGGGAAGTCCACACGGGCGTGTAAGC
8466589 A
66 A
* * * *
8466590 AATTGGGCCGTGTGGGCCATACGGGTGTGTAGGCCCACACGGGCAAG-CCACATGGGCGTGTAAG
1 AATTGGGCCGTGTGGACCACACGGGCGTGTAGGCCCACACGGG-AAGTCCACACGGGCGTGTAAG
8466654 C
65 C
8466655 CTATGTCTCT
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
66 52 0.96
67 2 0.04
ACGTcount: A:0.20, C:0.23, G:0.38, T:0.19
Consensus pattern (66 bp):
AATTGGGCCGTGTGGACCACACGGGCGTGTAGGCCCACACGGGAAGTCCACACGGGCGTGTAAGC
A
Found at i:8468775 original size:18 final size:16
Alignment explanation
Indices: 8468752--8468796 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 16
8468742 GCATAAAAAT
8468752 TATTATCATTTATAATGA
1 TATTAT-ATTTATAAT-A
*
8468770 TATTATTATTTGTAATA
1 TATTA-TATTTATAATA
8468787 TATTATATTT
1 TATTATATTT
8468797 TCGTCTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 5 0.20
17 6 0.24
18 13 0.52
19 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (16 bp):
TATTATATTTATAATA
Found at i:8469043 original size:14 final size:14
Alignment explanation
Indices: 8468985--8469037 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
8468975 AATTTTTAAA
8468985 AAAATTTAACAAAT
1 AAAATTTAACAAAT
**
8468999 AAAATTTAGA-ATTT
1 AAAATTTA-ACAAAT
* *
8469013 AGAGTTTAACAAAT
1 AAAATTTAACAAAT
8469027 AAAATTTAACA
1 AAAATTTAACA
8469038 GTTAAAGTTT
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
13 1 0.03
14 27 0.93
15 1 0.03
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.32
Consensus pattern (14 bp):
AAAATTTAACAAAT
Found at i:8469046 original size:28 final size:28
Alignment explanation
Indices: 8468989--8469047 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
8468979 TTTAAAAAAA
* *
8468989 TTTAACAAATAAAATTTAGAATTTAGAG
1 TTTAACAAATAAAATTTAGAAGTTAAAG
8469017 TTTAACAAATAAAATTTA-ACAGTTAAAG
1 TTTAACAAATAAAATTTAGA-AGTTAAAG
8469045 TTT
1 TTT
8469048 GTCCTGTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 1 0.04
28 27 0.96
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.37
Consensus pattern (28 bp):
TTTAACAAATAAAATTTAGAAGTTAAAG
Found at i:8469269 original size:17 final size:17
Alignment explanation
Indices: 8469231--8469269 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
8469221 TATTTCATAT
*
8469231 AATTATTTTAATATTTA
1 AATTATTTTAATATCTA
*
8469248 AATTATTTTATTATCTA
1 AATTATTTTAATATCTA
*
8469265 CATTA
1 AATTA
8469270 ATGTTGATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (17 bp):
AATTATTTTAATATCTA
Found at i:8471041 original size:5 final size:5
Alignment explanation
Indices: 8471027--8471066 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
8471017 TCTTTTTGTC
8471027 TTTA- TTTAT TTTAT TTTAT TTTAT TTTA- TTTAT TATTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T-TTAT T
8471067 AATTTTAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 8 0.24
5 20 0.61
6 5 0.15
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:8471098 original size:22 final size:23
Alignment explanation
Indices: 8471070--8471118 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
8471060 TATTATTAAT
8471070 TTTAAAA-ATTTTGA-AATATATA
1 TTTAAAATATTTT-ATAATATATA
8471092 TTTAAAATATTTTATTAATATATA
1 TTTAAAATATTTTA-TAATATATA
8471116 TTT
1 TTT
8471119 TGAAATTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 8 0.33
23 5 0.21
24 11 0.46
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
TTTAAAATATTTTATAATATATA
Found at i:8471153 original size:22 final size:21
Alignment explanation
Indices: 8471115--8471169 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
8471105 ATTAATATAT
*
8471115 ATTTTGAA-ATTACTTTTTTAA
1 ATTTTAAATATTACTTTTTT-A
*
8471136 ATTTTAAATATTATTTTTTTA
1 ATTTTAAATATTACTTTTTTA
8471157 ATATTTAAATATT
1 AT-TTTAAATATT
8471170 TTAAACTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 10 0.33
22 20 0.67
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (21 bp):
ATTTTAAATATTACTTTTTTA
Found at i:8471423 original size:19 final size:20
Alignment explanation
Indices: 8471401--8471453 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 20
8471391 TTTTATTATC
*
8471401 TTTTGTCTTTTTCTTTAAAT
1 TTTTATCTTTTTCTTTAAAT
* *
8471421 TTTTTTCTTTTT-TTT-AAG
1 TTTTATCTTTTTCTTTAAAT
*
8471439 TTTTATATTTTTCTT
1 TTTTATCTTTTTCTT
8471454 GTTTTATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
18 12 0.43
19 5 0.18
20 11 0.39
ACGTcount: A:0.13, C:0.08, G:0.04, T:0.75
Consensus pattern (20 bp):
TTTTATCTTTTTCTTTAAAT
Found at i:8471424 original size:20 final size:19
Alignment explanation
Indices: 8471401--8471442 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
8471391 TTTTATTATC
8471401 TTTTGTCTTTTTCTTTAAAT
1 TTTTGTCTTTTT-TTTAAAT
* *
8471421 TTTTTTCTTTTTTTTAAGT
1 TTTTGTCTTTTTTTTAAAT
8471440 TTT
1 TTT
8471443 ATATTTTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.12, C:0.07, G:0.05, T:0.76
Consensus pattern (19 bp):
TTTTGTCTTTTTTTTAAAT
Found at i:8471474 original size:4 final size:4
Alignment explanation
Indices: 8471465--8471490 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8471455 TTTTATTTTG
8471465 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
8471491 GTTATTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:8471557 original size:23 final size:22
Alignment explanation
Indices: 8471531--8471593 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 22
8471521 ATTTGAAATG
8471531 TTTTATAATATATATTTTTTAAA
1 TTTTA-AATATATATTTTTTAAA
8471554 TTTTAAATAT-TATTTTTTTAAA
1 TTTTAAATATATA-TTTTTTAAA
**
8471576 CATTAAATATATATTTTT
1 TTTTAAATATATATTTTT
8471594 AATAATATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
21 2 0.06
22 27 0.75
23 7 0.19
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTAAATATATATTTTTTAAA
Found at i:8471606 original size:23 final size:20
Alignment explanation
Indices: 8471537--8471608 Score: 65
Period size: 22 Copynumber: 3.4 Consensus size: 20
8471527 AATGTTTTAT
*
8471537 AATATATATTTTTTAAATTTTA
1 AATATATA-TTTTTAAA-ATTA
*
8471559 AATATTATTTTTTTAAACATTA
1 AATA-TATATTTTTAAA-ATTA
8471581 AATATATATTTTTAATAATATA
1 AATATATATTTTTAA-AAT-TA
8471603 AA-ATAT
1 AATATAT
8471609 TTAAAGATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
21 16 0.37
22 24 0.56
23 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (20 bp):
AATATATATTTTTAAAATTA
Found at i:8471688 original size:22 final size:23
Alignment explanation
Indices: 8471658--8471716 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
8471648 GTTTATTAAT
8471658 ATTTTTAATATTATTTAATT-TG
1 ATTTTTAATATTATTTAATTATG
*
8471680 -TTTTATAATATT-TTAAATTATG
1 ATTTT-TAATATTATTTAATTATG
8471702 ATTTTTAA-ATTATTT
1 ATTTTTAATATTATTT
8471717 TTAAAGATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
21 13 0.42
22 14 0.45
23 4 0.13
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (23 bp):
ATTTTTAATATTATTTAATTATG
Found at i:8472024 original size:66 final size:66
Alignment explanation
Indices: 8471954--8472108 Score: 149
Period size: 67 Copynumber: 2.3 Consensus size: 66
8471944 TGAATATCTT
* *
8471954 TAAAAATAATTTAAAAATTATAA-TTTAAAATATCATAAA-A-CAAATTAAATAATATTTAAATT
1 TAAAAATAATTTAAAAATTATAAGTTTAAAATAT-ATAAATATCAAA-AAAATAATATTTAAAAT
8472016 ATTA
64 -TTA
* * * *
8472020 TAAAATTAA--TAATAAATTTAAAAGTTTAAAATATTTAAATATTAAAAAAATAATATTTAAAAT
1 TAAAAATAATTTAA-AAA-TTATAAGTTTAAAATATATAAATATCAAAAAAATAATATTTAAAAT
8472083 TTA
64 TTA
* *
8472086 GAAAAGTAATTTAAAAATATATA
1 TAAAAATAATTTAAAAAT-TATA
8472109 TTAATAAAAT
Statistics
Matches: 72, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
64 3 0.04
65 3 0.04
66 28 0.39
67 32 0.44
68 6 0.08
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.37
Consensus pattern (66 bp):
TAAAAATAATTTAAAAATTATAAGTTTAAAATATATAAATATCAAAAAAATAATATTTAAAATTT
A
Found at i:8472090 original size:22 final size:23
Alignment explanation
Indices: 8472049--8472105 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
8472039 AAAAGTTTAA
8472049 AATATTT-AAATATTAAAAAAAT
1 AATATTTAAAATATTAAAAAAAT
* *
8472071 AATATTTAAAAT-TTAGAAAAGT
1 AATATTTAAAATATTAAAAAAAT
*
8472093 AAT-TTAAAAATAT
1 AATATTTAAAATAT
8472106 ATATTAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 7 0.23
22 19 0.63
23 4 0.13
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (23 bp):
AATATTTAAAATATTAAAAAAAT
Found at i:8472212 original size:8 final size:8
Alignment explanation
Indices: 8472201--8472227 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
8472191 AAGATAAAAG
8472201 AAAAGTAA
1 AAAAGTAA
8472209 AAAAGTAA
1 AAAAGTAA
8472217 AAAAGTAA
1 AAAAGTAA
8472225 AAA
1 AAA
8472228 TAGAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (8 bp):
AAAAGTAA
Found at i:8472213 original size:28 final size:27
Alignment explanation
Indices: 8472173--8472226 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
8472163 ATAAATAAGT
8472173 AAAATAAATAAAG-AGAAAAAGATAAAAG
1 AAAATAAATAAAGTA-AAAAAG-TAAAAG
8472201 AAAAGTAAA-AAAGTAAAAAAGTAAAA
1 AAAA-TAAATAAAGTAAAAAAGTAAAA
8472227 ATAGAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 5 0.21
28 14 0.58
29 5 0.21
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (27 bp):
AAAATAAATAAAGTAAAAAAGTAAAAG
Found at i:8475113 original size:20 final size:19
Alignment explanation
Indices: 8475088--8475127 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8475078 TTTTTAAAAT
8475088 TTTAAAAAACTGTTATGTAA
1 TTTAAAAAACT-TTATGTAA
**
8475108 TTTAAATTACTTTATGTAA
1 TTTAAAAAACTTTATGTAA
8475127 T
1 T
8475128 AATTTTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.47
Consensus pattern (19 bp):
TTTAAAAAACTTTATGTAA
Found at i:8475809 original size:17 final size:16
Alignment explanation
Indices: 8475787--8475836 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
8475777 TTAAATATTG
8475787 TTTAATCAATAATTTTA
1 TTTAAT-AATAATTTTA
8475804 TTTAATATATAA--TTA
1 TTTAATA-ATAATTTTA
8475819 TTTAAATAATAATTTTA
1 TTT-AATAATAATTTTA
8475836 T
1 T
8475837 AAAATATACT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
15 10 0.34
16 5 0.17
17 14 0.48
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (16 bp):
TTTAATAATAATTTTA
Found at i:8475811 original size:154 final size:152
Alignment explanation
Indices: 8475423--8475840 Score: 503
Period size: 147 Copynumber: 2.8 Consensus size: 152
8475413 TAACCTTACA
*
8475423 AATATATTATATTTTAAAAACTTAAGTATATTTTTTAAATTT-AGTTATATATTTTAAATATTGT
1 AATATATTATATTTCAAAAACTTAAGTATA-TTTTT--ATTTGA-TTATATATTTTAAATATTGT
* * *
8475487 TTTATTAATAATTTTATTTAATATATCATTATTTAAATAAAAATTTTATAAAAAAATCAGCAACC
62 TTTATCAATAATTTTATTTAATATATCATTATTTAAATAATAATTTTATAAAAAAATCAACAACC
* * *
8475552 TATGCATCACACACGGGATAAAAAATT
127 TATGAATCACACAC-AGATAAAAAACT
* * *
8475579 AGTATATTATATTTCAAAAACTTAAGTATATTTTTA---G---ATATCTTTTAAATATTATTTTA
1 AATATATTATATTTCAAAAACTTAAGTATATTTTTATTTGATTATATATTTTAAATATTGTTTTA
* * * *
8475638 TCAATAATTTTATTTAATATATCTTTATTTAAATAATAATTTTATAAAACACA-CAAATAACCTG
66 TCAATAATTTTATTTAATATATCATTATTTAAATAATAATTTTATAAAA-AAATC-AACAACCTA
*
8475702 TGAATCACACA-AGATAGAAAACT
129 TGAATCACACACAGATAAAAAACT
* ** *
8475725 AATATATTATATTTCAAAAATTTGCGTATATTTTATATTTTGATTATATTTTTTAAATATTGTTT
1 AATATATTATATTTCAAAAACTTAAGTATATTTT-TA-TTTGATTATATATTTTAAATATTGTTT
* *
8475790 AATCAATAATTTTATTTAATATATAATTATTTAAATAATAATTTTATAAAA
64 TATCAATAATTTTATTTAATATATCATTATTTAAATAATAATTTTATAAAA
8475841 TATACTGACA
Statistics
Matches: 227, Mismatches: 24, Indels: 24
0.83 0.09 0.09
Matches are distributed among these distances:
146 39 0.17
147 69 0.30
148 18 0.08
151 1 0.00
153 1 0.00
154 66 0.29
155 5 0.02
156 28 0.12
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (152 bp):
AATATATTATATTTCAAAAACTTAAGTATATTTTTATTTGATTATATATTTTAAATATTGTTTTA
TCAATAATTTTATTTAATATATCATTATTTAAATAATAATTTTATAAAAAAATCAACAACCTATG
AATCACACACAGATAAAAAACT
Found at i:8475854 original size:154 final size:151
Alignment explanation
Indices: 8475423--8475864 Score: 513
Period size: 154 Copynumber: 2.9 Consensus size: 151
8475413 TAACCTTACA
*
8475423 AATATATTATATTTTAAAAACTTAAGTATATTTTTTAAATTT-AGTTATATATTTTAAATATTGT
1 AATATATTATATTTCAAAAACTTAAGTATA-TTTTT--ATTTGA-TTATATATTTTAAATATTGT
* * * *
8475487 TTTATTAATAATTTTATTTAATATATCATTATTTAAATAAAAATTTTATAAAAAAATCAGCAACC
62 TTTATCAATAATTTTATTTAATATATCATTATTTAAATAATAATTTTATAAAAAACT-AACAACC
* *
8475552 TATGCATCACACACGGGATAAAAAATT
126 TATGCATCACACAC-AGATAAAAAACT
* * *
8475579 AGTATATTATATTTCAAAAACTTAAGTATATTTTTA---G---ATATCTTTTAAATATTATTTTA
1 AATATATTATATTTCAAAAACTTAAGTATATTTTTATTTGATTATATATTTTAAATATTGTTTTA
* * * *
8475638 TCAATAATTTTATTTAATATATCTTTATTTAAATAATAATTTTATAAAACACACAAATAACCTGT
66 TCAATAATTTTATTTAATATATCATTATTTAAATAATAATTTTATAAAA-A-ACTAACAACCTAT
* *
8475703 GAATCACACA-AGATAGAAAACT
129 GCATCACACACAGATAAAAAACT
* ** *
8475725 AATATATTATATTTCAAAAATTTGCGTATATTTTATATTTTGATTATATTTTTTAAATATTGTTT
1 AATATATTATATTTCAAAAACTTAAGTATATTTT-TA-TTTGATTATATATTTTAAATATTGTTT
* * *
8475790 AATCAATAATTTTATTTAATATATAATTATTTAAATAATAATTTTATAAAATATACTGACAACCT
64 TATCAATAATTTTATTTAATATATCATTATTTAAATAATAATTTTATAAAA-A-ACTAACAACCT
8475855 ATGCATCACA
127 ATGCATCACA
8475865 TGGGATAAAA
Statistics
Matches: 243, Mismatches: 32, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
146 39 0.16
147 68 0.28
148 17 0.07
149 1 0.00
151 1 0.00
153 1 0.00
154 83 0.34
155 5 0.02
156 28 0.12
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.44
Consensus pattern (151 bp):
AATATATTATATTTCAAAAACTTAAGTATATTTTTATTTGATTATATATTTTAAATATTGTTTTA
TCAATAATTTTATTTAATATATCATTATTTAAATAATAATTTTATAAAAAACTAACAACCTATGC
ATCACACACAGATAAAAAACT
Found at i:8476524 original size:24 final size:24
Alignment explanation
Indices: 8476473--8476524 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
8476463 TTTAGTATAT
* * *
8476473 ATTAGTATAATATATTTAAGATTT
1 ATTAGCATAATATATTTAACATTG
*
8476497 ATTAGCATAATATATTTGACATTG
1 ATTAGCATAATATATTTAACATTG
8476521 ATTA
1 ATTA
8476525 AAATTAGGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (24 bp):
ATTAGCATAATATATTTAACATTG
Found at i:8476815 original size:16 final size:18
Alignment explanation
Indices: 8476794--8476829 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8476784 GGTTTCCAAC
8476794 TACTTT-AATC-AAGCAT
1 TACTTTAAATCTAAGCAT
8476810 TACTTTAAATCTAAGCAT
1 TACTTTAAATCTAAGCAT
8476828 TA
1 TA
8476830 AAAAGTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 4 0.22
18 8 0.44
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (18 bp):
TACTTTAAATCTAAGCAT
Found at i:8477860 original size:136 final size:136
Alignment explanation
Indices: 8477614--8477884 Score: 443
Period size: 136 Copynumber: 2.0 Consensus size: 136
8477604 AGTTGTTGGT
*** *
8477614 GAACTACTTTCAAGTTTATTTCCATCTTTCAAGTGCCAAATCATTTTGGAACTATTTGAGTCCGA
1 GAACTACTTTCAAGTTTATTTCCATCTTTCAAGTGCCAAATCATTTTGGAACTATCCAAGTCCAA
* * *
8477679 AACTTTACTTCAATAAGACAGTGAAATGAATTATGTATTTCTAGATTATTGTGTTGCTTGTAAAC
66 AACTTTACTTCAATAAGACAATGAAATGAATTATGTATTTATAGATTATTGCGTTGCTTGTAAAC
8477744 TTAATC
131 TTAATC
*
8477750 GAACTACTTTTAAGTTTATTTCCATCTTTCAAGTGCCAAATCATTTTGGAACTATCCAAGTCCAA
1 GAACTACTTTCAAGTTTATTTCCATCTTTCAAGTGCCAAATCATTTTGGAACTATCCAAGTCCAA
* * *
8477815 AACTTTACTTCAATAAGGCAATGAAATGAATTATGTATTTATAGATTATTGCGTTGCTTGTGATC
66 AACTTTACTTCAATAAGACAATGAAATGAATTATGTATTTATAGATTATTGCGTTGCTTGTAAAC
8477880 TTAAT
131 TTAAT
8477885 TATATTTTTA
Statistics
Matches: 124, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
136 124 1.00
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.39
Consensus pattern (136 bp):
GAACTACTTTCAAGTTTATTTCCATCTTTCAAGTGCCAAATCATTTTGGAACTATCCAAGTCCAA
AACTTTACTTCAATAAGACAATGAAATGAATTATGTATTTATAGATTATTGCGTTGCTTGTAAAC
TTAATC
Found at i:8480630 original size:8 final size:8
Alignment explanation
Indices: 8480619--8480643 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
8480609 TTTAATAAGA
8480619 TATTTTAT
1 TATTTTAT
8480627 TATTTTAT
1 TATTTTAT
8480635 TATTTTAT
1 TATTTTAT
8480643 T
1 T
8480644 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:8481354 original size:14 final size:14
Alignment explanation
Indices: 8481335--8481365 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8481325 TAGATAGTTG
8481335 AAGAAAGGCTAAGA
1 AAGAAAGGCTAAGA
*
8481349 AAGAAAGGTTAAGA
1 AAGAAAGGCTAAGA
8481363 AAG
1 AAG
8481366 GTTCAAATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.58, C:0.03, G:0.29, T:0.10
Consensus pattern (14 bp):
AAGAAAGGCTAAGA
Found at i:8483410 original size:42 final size:42
Alignment explanation
Indices: 8483320--8483415 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 42
8483310 TACCGTGTCA
*
8483320 ATGCCATATCCCGGATATGGTCTTACATGAAATATCATCTCG
1 ATGCCATATCCCGGACATGGTCTTACATGAAATATCATCTCG
* * * *
8483362 ACGCCATGTCCCTGACATGGTCTTATATGAAATCAT-ATAC-CG
1 ATGCCATATCCCGGACATGGTCTTACATGAAAT-ATCAT-CTCG
8483404 ATGCCATATCCC
1 ATGCCATATCCC
8483416 ATATATGATC
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
42 42 0.93
43 3 0.07
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCGGACATGGTCTTACATGAAATATCATCTCG
Found at i:8483428 original size:42 final size:41
Alignment explanation
Indices: 8483320--8483430 Score: 109
Period size: 42 Copynumber: 2.6 Consensus size: 41
8483310 TACCGTGTCA
* *
8483320 ATGCCATATCCCGGATATGGTCTTACATGAAATATCATCTCG
1 ATGCCATATCCC-TATATGGTCTTATATGAAATATCATCTCG
* * *
8483362 ACGCCATGTCCCTGACATGGTCTTATATGAAATCAT-ATAC-CG
1 ATGCCATATCCCT-ATATGGTCTTATATGAAAT-ATCAT-CTCG
*
8483404 ATGCCATATCCCATATATGATCTTATA
1 ATGCCATATCCC-TATATGGTCTTATA
8483431 CGGAATCTCG
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
42 52 0.93
43 4 0.07
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCTATATGGTCTTATATGAAATATCATCTCG
Found at i:8483988 original size:27 final size:25
Alignment explanation
Indices: 8483935--8483984 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 25
8483925 TAACTCATAA
8483935 ATTTCACATTTCACAAATCAGTCCTT
1 ATTTCACATTTCACAAA-CAGTCCTT
8483961 ATTTCACATTTTCATCAAA-AGTCC
1 ATTTCACA-TTTCA-CAAACAGTCC
8483985 CTTAACAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 13 0.59
27 5 0.23
28 4 0.18
ACGTcount: A:0.32, C:0.26, G:0.04, T:0.38
Consensus pattern (25 bp):
ATTTCACATTTCACAAACAGTCCTT
Found at i:8487093 original size:38 final size:37
Alignment explanation
Indices: 8487041--8487112 Score: 99
Period size: 38 Copynumber: 1.9 Consensus size: 37
8487031 TAATTCATAT
*
8487041 TTTAATAATAATTATATTAAGAATATTACTAAATTGTA
1 TTTAATAATAATTATATTAA-AATATGACTAAATTGTA
* * *
8487079 TTTAATAATTATTATGTTAAAATATGATTAAATT
1 TTTAATAATAATTATATTAAAATATGACTAAATT
8487113 ATTTTTTCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 12 0.40
38 18 0.60
ACGTcount: A:0.46, C:0.01, G:0.06, T:0.47
Consensus pattern (37 bp):
TTTAATAATAATTATATTAAAATATGACTAAATTGTA
Found at i:8487304 original size:16 final size:16
Alignment explanation
Indices: 8487285--8487328 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
8487275 ATTACAACTC
*
8487285 TATTCCATTATAGTTT
1 TATTTCATTATAGTTT
8487301 TATTTCATTATAGTTT
1 TATTTCATTATAGTTT
8487317 TATTTCATTATA
1 TATTTCATTATA
8487329 TCCCCATTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.27, C:0.09, G:0.05, T:0.59
Consensus pattern (16 bp):
TATTTCATTATAGTTT
Found at i:8496822 original size:11 final size:11
Alignment explanation
Indices: 8496806--8496836 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8496796 TTTACATATT
8496806 TAAAAATTATA
1 TAAAAATTATA
*
8496817 TAAAAATAATA
1 TAAAAATTATA
8496828 TAAAAATTA
1 TAAAAATTA
8496837 ATACAGGCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:8497887 original size:15 final size:15
Alignment explanation
Indices: 8497854--8497887 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8497844 AGTTATGTCT
*
8497854 ATGTATGGAATTATA
1 ATGTATGGAATTAGA
*
8497869 ATGTATGGAATTAGC
1 ATGTATGGAATTAGA
8497884 ATGT
1 ATGT
8497888 CAAAAAGATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (15 bp):
ATGTATGGAATTAGA
Found at i:8498074 original size:16 final size:17
Alignment explanation
Indices: 8498053--8498086 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
8498043 AATTAGAGAA
8498053 TTCTATTTAA-TTCTAT
1 TTCTATTTAATTTCTAT
8498069 TTCTATTTAATTTCTAT
1 TTCTATTTAATTTCTAT
8498086 T
1 T
8498087 AAATCCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (17 bp):
TTCTATTTAATTTCTAT
Found at i:8498392 original size:11 final size:11
Alignment explanation
Indices: 8498376--8498400 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8498366 AGCAAAATAA
8498376 AATATATATAT
1 AATATATATAT
8498387 AATATATATAT
1 AATATATATAT
8498398 AAT
1 AAT
8498401 TTCTGCTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AATATATATAT
Found at i:8499557 original size:15 final size:15
Alignment explanation
Indices: 8499537--8499566 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8499527 GAGTATGATA
8499537 AAATATTAAAAAAAT
1 AAATATTAAAAAAAT
*
8499552 AAATATTTAAAAAAT
1 AAATATTAAAAAAAT
8499567 TACTAATAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAATATTAAAAAAAT
Found at i:8501213 original size:19 final size:19
Alignment explanation
Indices: 8501163--8501207 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
8501153 AATAACTTTC
*
8501163 AAAAATTAAAAATATTTCT
1 AAAAATTAAAAATATTTAT
*
8501182 TAAAATTAAAAATATTTAT
1 AAAAATTAAAAATATTTAT
8501201 AAAAATT
1 AAAAATT
8501208 CTAAATTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATTAAAAATATTTAT
Found at i:8501853 original size:17 final size:18
Alignment explanation
Indices: 8501821--8501855 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8501811 GAAAATCTAA
*
8501821 TTTACATGCTTTAATTAG
1 TTTACATGCATTAATTAG
8501839 TTTACATG-ATTAATTAG
1 TTTACATGCATTAATTAG
8501856 AGCATCTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.49
Consensus pattern (18 bp):
TTTACATGCATTAATTAG
Found at i:8503148 original size:21 final size:21
Alignment explanation
Indices: 8503122--8503163 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8503112 TTTGGGTTCG
*
8503122 TGTCTCGAGACATCAAGAACA
1 TGTCTCAAGACATCAAGAACA
*
8503143 TGTCTCAAGACCTCAAGAACA
1 TGTCTCAAGACATCAAGAACA
8503164 AAAATTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.26, G:0.17, T:0.19
Consensus pattern (21 bp):
TGTCTCAAGACATCAAGAACA
Found at i:8504356 original size:21 final size:23
Alignment explanation
Indices: 8504303--8504358 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 23
8504293 AAAAATTGAG
*
8504303 ATAAGTTATGATAATTATACATTT
1 ATAA-TTATTATAATTATACATTT
* *
8504327 AAAAATATTATAATT-TA-ATTT
1 ATAATTATTATAATTATACATTT
8504348 ATAATTATTAT
1 ATAATTATTAT
8504359 TTTGAAAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
21 13 0.48
22 2 0.07
23 9 0.33
24 3 0.11
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (23 bp):
ATAATTATTATAATTATACATTT
Found at i:8504518 original size:35 final size:35
Alignment explanation
Indices: 8504450--8504518 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
8504440 TAATTATTAC
* * *
8504450 AATTTTAATTTAATTTAGAATTATTAGTTAAAAAT
1 AATTATAATTTAATTTAAAATTATTAGTAAAAAAT
8504485 AATTATAATTTAATTTTAAAATTATTA-TAAAAAA
1 AATTATAATTTAA-TTTAAAATTATTAGTAAAAAA
8504519 GACTTTTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 18 0.60
36 12 0.40
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (35 bp):
AATTATAATTTAATTTAAAATTATTAGTAAAAAAT
Found at i:8509339 original size:22 final size:21
Alignment explanation
Indices: 8509282--8509339 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 21
8509272 TATAATATAT
* *
8509282 AATATGAAAGTATATATGTAAA
1 AATAT-AAAGAATATATATAAA
* *
8509304 AATAATATATAATATATATAAA
1 AAT-ATAAAGAATATATATAAA
8509326 GAATATAAAGAATA
1 -AATATAAAGAATA
8509340 CGTAATACAA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
22 23 0.82
23 5 0.18
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (21 bp):
AATATAAAGAATATATATAAA
Found at i:8509396 original size:50 final size:49
Alignment explanation
Indices: 8509299--8509439 Score: 121
Period size: 50 Copynumber: 2.8 Consensus size: 49
8509289 AAGTATATAT
* * *
8509299 GTAAAAATAATATATAATATATATAAAGAAT-ATAAAGAATACGTAATA-CAA
1 GTAAAAAT-ATA-ATAATATATATAAATAATAATTAA-AATA-ATAATAGCAA
***
8509350 GTAAAAATATAATAATAATATATAAATAATAATGTAAAATAATAATAGTTT
1 GTAAAAATATAATAAT-ATATATAAATAATAAT-TAAAATAATAATAGCAA
*
8509401 GTCAAAA-ATAAT-ATATA-ATAAATAATAATATAAAATAAT
1 GTAAAAATATAATAATATATATAAATAATAAT-TAAAATAAT
8509440 GTATAATAAA
Statistics
Matches: 78, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
47 21 0.27
48 3 0.04
49 7 0.09
50 25 0.32
51 20 0.26
52 2 0.03
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (49 bp):
GTAAAAATATAATAATATATATAAATAATAATTAAAATAATAATAGCAA
Found at i:8509469 original size:57 final size:57
Alignment explanation
Indices: 8509356--8509472 Score: 134
Period size: 57 Copynumber: 2.1 Consensus size: 57
8509346 ACAAGTAAAA
* *
8509356 ATATAATAATAATATATAAATAATAATGTAAAATAATAATAGTTTGTCAAAAATAAT
1 ATATAATAATAATATATAAATAATAATGTAAAATAATAATAATTTATCAAAAATAAT
* *
8509413 ATATAATAAATAATA-ATATAA-AATAATGTATAATAA-AATAATTATAT-AATATATAAT
1 ATATAAT-AATAATATATA-AATAATAATGTAAAATAATAATAATT-TATCAA-AAATAAT
8509470 ATA
1 ATA
8509473 AAGATATATA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
56 8 0.15
57 35 0.67
58 9 0.17
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (57 bp):
ATATAATAATAATATATAAATAATAATGTAAAATAATAATAATTTATCAAAAATAAT
Found at i:8509473 original size:20 final size:17
Alignment explanation
Indices: 8509408--8509470 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
8509398 TTTGTCAAAA
*
8509408 ATAATATATAATAA-AT
1 ATAATATAAAATAATAT
*
8509424 AATAATATAAAATAATGT
1 -ATAATATAAAATAATAT
8509442 AT-A-ATAAAATAATTAT
1 ATAATATAAAATAA-TAT
*
8509458 ATAATATATAATA
1 ATAATATAAAATA
8509471 TAAAGATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
15 9 0.24
16 5 0.13
17 16 0.42
18 8 0.21
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (17 bp):
ATAATATAAAATAATAT
Found at i:8509482 original size:50 final size:51
Alignment explanation
Indices: 8509408--8509531 Score: 127
Period size: 50 Copynumber: 2.5 Consensus size: 51
8509398 TTTGTCAAAA
8509408 ATAATATATAATAAATAATAATATAAA-ATAATGT-ATAATAAA-ATAATTAT
1 ATAATATATAATAAATAATAATATAAACATAATGTGATAA-AAATAT-ATTAT
*
8509458 ATAATATATAATATAA-AGAT-ATATAAACATTATGTGATAAAAATATA-T-T
1 ATAATATATAATA-AATA-ATAATATAAACATAATGTGATAAAAATATATTAT
* * *
8509507 ATAATAAATAATAAGTAATGATATA
1 ATAATATATAATAAATAATAATATA
8509532 TGTTAATTAA
Statistics
Matches: 64, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
48 3 0.05
49 19 0.30
50 22 0.34
51 14 0.22
52 6 0.09
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (51 bp):
ATAATATATAATAAATAATAATATAAACATAATGTGATAAAAATATATTAT
Found at i:8513627 original size:26 final size:26
Alignment explanation
Indices: 8513596--8513703 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
8513586 TGAAATTCCC
*
8513596 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
8513622 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
8513648 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8513674 GTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8513700 ATCA
1 ATCA
8513704 ATTTGTATTA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8517397 original size:206 final size:207
Alignment explanation
Indices: 8516661--8517452 Score: 1221
Period size: 206 Copynumber: 3.8 Consensus size: 207
8516651 AATCTGCTAT
* * * * * * *
8516661 CTTCGTTTTGTTCCCTGCCAATACAGAAATGCCAAATCATCTTAGATTTGTTTCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
** * * * * *
8516726 GCAAAAGTCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * * *
8516791 GGATC-TGCTCCAGTCTAATCGTCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
* *
8516855 GGATACGCCAAA
196 GGAGATGCCAAA
*
8516867 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATTGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
8516932 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAAGCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * *
8516997 GGATCTTGCTTTAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCATTGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
8517062 GGAGATGCCAAA
196 GGAGATGCCAAA
8517074 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
8517139 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCA-TAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * * * *
8517203 GGATCTTGCTTCAGTATAAACATATGAAAGCCAGATCTGCTATGTATCTGCTCCCCGTCGAA-GT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
*
8517267 GGAGATGCCAGA
196 GGAGATGCCAAA
* *
8517279 CTTCGATTTGTTCTCTGCCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
8517344 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* *
8517409 GGATCTTGCTTCAATATAAACATCTGAAGGCCAGATCTTCTATG
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATG
8517453 CTGCGGCCTA
Statistics
Matches: 537, Mismatches: 47, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
205 120 0.22
206 247 0.46
207 170 0.32
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
GGAGATGCCAAA
Found at i:8529698 original size:3 final size:3
Alignment explanation
Indices: 8529690--8529805 Score: 59
Period size: 3 Copynumber: 39.0 Consensus size: 3
8529680 AAGTAAAAAT
* * * *
8529690 ATA ATA ATA ATA TATAA ATA ATA AT- GTA A-A ATA ATA ATA GTTT GTA
1 ATA ATA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
*
8529736 A-A A-A ATA ATA TATA ATAA ATA ATA ATA AT- ATA A-A ATA ATGT ATA
1 ATA ATA ATA ATA -ATA AT-A ATA ATA ATA ATA ATA ATA ATA AT-A ATA
*
8529780 ATA A-A ATA ATT AT- ATA ATA TATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA
8529806 TAAAGATATA
Statistics
Matches: 89, Mismatches: 10, Indels: 28
0.70 0.08 0.22
Matches are distributed among these distances:
2 15 0.17
3 57 0.64
4 16 0.18
5 1 0.01
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:8529726 original size:30 final size:31
Alignment explanation
Indices: 8529690--8529818 Score: 108
Period size: 30 Copynumber: 4.2 Consensus size: 31
8529680 AAGTAAAAAT
*
8529690 ATAATAATAATATATA-AATAATAATGTAAA
1 ATAATAATAATATATATAATAATAATATAAA
* * * * *
8529720 ATAATAATAGTTTGTA-AAAAATAATATATA
1 ATAATAATAATATATATAATAATAATATAAA
* *
8529750 ATAAATAATAATA-ATATAA-AATAATGTATA
1 AT-AATAATAATATATATAATAATAATATAAA
8529780 ATAA-AATAAT-TATATAATATATAATATAAA
1 ATAATAATAATATATATAATA-ATAATATAAA
8529810 GATATATAA
1 -ATA-ATAA
8529819 ACATTATGTG
Statistics
Matches: 79, Mismatches: 12, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
28 12 0.15
29 3 0.04
30 48 0.61
31 13 0.16
32 1 0.01
33 2 0.03
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (31 bp):
ATAATAATAATATATATAATAATAATATAAA
Found at i:8529728 original size:50 final size:50
Alignment explanation
Indices: 8529631--8529774 Score: 136
Period size: 50 Copynumber: 2.8 Consensus size: 50
8529621 AAGTATATAT
* *
8529631 GTAAAAATAATATATAAT-ATATATAAATAAT-ATAAAGAATACGTAATA-CAA
1 GTAAAAAT-ATA-ATAATAATATATAAATAATAATTAA-AATA-ATAATAGCAA
***
8529682 GTAAAAATATAATAATAATATATAAATAATAATGTAAAATAATAATAGTTT
1 GTAAAAATATAATAATAATATATAAATAATAAT-TAAAATAATAATAGCAA
*
8529733 GTAAAAA-ATAATATATAATAAAT-AATAATAATATAAAATAAT
1 GTAAAAATATAATA-ATAATATATAAATAATAAT-TAAAATAAT
8529775 GTATAATAAA
Statistics
Matches: 81, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
49 5 0.06
50 45 0.56
51 29 0.36
52 2 0.02
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (50 bp):
GTAAAAATATAATAATAATATATAAATAATAATTAAAATAATAATAGCAA
Found at i:8529765 original size:23 final size:23
Alignment explanation
Indices: 8529589--8529818 Score: 89
Period size: 23 Copynumber: 10.2 Consensus size: 23
8529579 AGATGACATA
* *
8529589 ATAATATAAAATAATTATAATAT
1 ATAATATATAATAATAATAATAT
* *
8529612 ATAATATGA-AAGTATATATGTAA-AA
1 ATAATAT-ATAA-TA-ATA-ATAATAT
*
8529637 ATAATATATAAT-AT-AT-ATAA
1 ATAATATATAATAATAATAATAT
* * *
8529657 ATAATATA-AAGAATACGTAATACA
1 ATAATATATAATAATA-ATAATA-T
*
8529681 AGTAA-AAAT-ATAATAATAATAT
1 A-TAATATATAATAATAATAATAT
8529703 ATAA-ATAATAATGTAA-AATAATA-
1 ATAATAT-ATAA--TAATAATAATAT
* * *
8529726 ATAGTTTGTAA-AA-AATAATAT
1 ATAATATATAATAATAATAATAT
* *
8529747 ATAATAAATAATAATAAT-ATAAA
1 ATAATATATAATAATAATAAT-AT
*
8529770 ATAATGTATAATAA-AATAATTAT
1 ATAATATATAATAATAATAA-TAT
8529793 ATAATATATAAT-ATAA-AGATAT
1 ATAATATATAATAATAATA-ATAT
8529815 ATAA
1 ATAA
8529819 ACATTATGTG
Statistics
Matches: 158, Mismatches: 23, Indels: 53
0.68 0.10 0.23
Matches are distributed among these distances:
19 3 0.02
20 22 0.14
21 11 0.07
22 22 0.14
23 56 0.35
24 23 0.15
25 18 0.11
26 3 0.02
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (23 bp):
ATAATATATAATAATAATAATAT
Found at i:8529803 original size:15 final size:14
Alignment explanation
Indices: 8529586--8529818 Score: 71
Period size: 13 Copynumber: 16.3 Consensus size: 14
8529576 AAAAGATGAC
8529586 ATAATAATATAA-A-
1 ATAAT-ATATAATAT
8529599 ATAAT-TATAATAT
1 ATAATATATAATAT
8529612 ATAATATGA-AAGTAT
1 ATAATAT-ATAA-TAT
*
8529627 AT-ATGTA-AA-A-
1 ATAATATATAATAT
8529637 ATAATATATAATAT
1 ATAATATATAATAT
*
8529651 AT-ATAAATAATAT
1 ATAATATATAATAT
* *
8529664 A-AAGAATACGTAATACA
1 ATAA-TATA--TAATA-T
*
8529681 AGTAAAAATATAATA-
1 A-T-AATATATAATAT
8529696 ATAATATATAA-AT
1 ATAATATATAATAT
* *
8529709 AATAATGTAAAATA-
1 -ATAATATATAATAT
* * *
8529723 ATAATAGTTTGTAAAAA
1 ATAATA---TATAATAT
*
8529740 ATAATATATAATAA
1 ATAATATATAATAT
8529754 ATAATA-ATAATAT
1 ATAATATATAATAT
* *
8529767 AAAATAATGTATAATAAA
1 ---ATAATATATAAT-AT
8529785 ATAATTATATAATAT
1 ATAA-TATATAATAT
*
8529800 ATAATATAAAGATAT
1 ATAATATATA-ATAT
8529815 ATAA
1 ATAA
8529819 ACATTATGTG
Statistics
Matches: 168, Mismatches: 21, Indels: 60
0.67 0.08 0.24
Matches are distributed among these distances:
10 2 0.01
11 10 0.06
12 4 0.02
13 45 0.27
14 37 0.22
15 25 0.15
16 21 0.12
17 17 0.10
18 1 0.01
19 4 0.02
20 2 0.01
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.34
Consensus pattern (14 bp):
ATAATATATAATAT
Found at i:8529808 original size:20 final size:19
Alignment explanation
Indices: 8529586--8529808 Score: 82
Period size: 20 Copynumber: 11.8 Consensus size: 19
8529576 AAAAGATGAC
*
8529586 ATAATAATATAAAATAAT-T
1 ATAAT-ATATAATATAATAT
8529605 ATAATATATAATATGAA-AGT
1 ATAATATATAATAT-AATA-T
* *
8529625 AT-ATATGTAAAAATAATAT
1 ATAATATAT-AATATAATAT
*
8529644 ATAATATATATAAATAATAT
1 ATAATATATA-ATATAATAT
* *
8529664 A-AAGAATACGTAATACAAGTA-
1 ATAA-TATA--TAATATAA-TAT
8529685 A-AA-ATATAATAATAATAT
1 ATAATATATAAT-ATAATAT
*
8529703 ATAA-ATAATAATGTAA-A-
1 ATAATAT-ATAATATAATAT
* * * *
8529720 ATAATA-ATAGTTTGTAAAAA
1 ATAATATATA--ATATAATAT
8529740 ATAATATATAATA-AATA-
1 ATAATATATAATATAATAT
* *
8529757 ATAATAATATAAAATAATGT
1 ATAAT-ATATAATATAATAT
*
8529777 ATAATA-A-AATA-ATTAT
1 ATAATATATAATATAATAT
8529793 ATAATATATAATATAA
1 ATAATATATAATATAA
8529809 AGATATATAA
Statistics
Matches: 158, Mismatches: 19, Indels: 54
0.68 0.08 0.23
Matches are distributed among these distances:
16 12 0.08
17 19 0.12
18 34 0.22
19 37 0.23
20 42 0.27
21 10 0.06
22 4 0.03
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (19 bp):
ATAATATATAATATAATAT
Found at i:8532730 original size:27 final size:27
Alignment explanation
Indices: 8532682--8532840 Score: 157
Period size: 27 Copynumber: 5.9 Consensus size: 27
8532672 GCGAGGCTGC
* *
8532682 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
8532709 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
8532735 CAAATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
8532762 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
8532789 CAGATATATGTGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
8532816 CAGATAATTATAGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
8532841 GACGCTTCCT
Statistics
Matches: 111, Mismatches: 13, Indels: 16
0.79 0.09 0.11
Matches are distributed among these distances:
26 9 0.08
27 97 0.87
28 5 0.05
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:8532782 original size:54 final size:54
Alignment explanation
Indices: 8532700--8532840 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 54
8532690 GTGACGAAGT
*
8532700 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAAATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGC
* * *
8532754 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGTAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGC
* *
8532808 CACCAGATCAGATAATTATAGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
8532841 GACGCTTCCT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 5 0.06
54 74 0.94
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGC
Found at i:8532987 original size:26 final size:27
Alignment explanation
Indices: 8532958--8533018 Score: 88
Period size: 28 Copynumber: 2.3 Consensus size: 27
8532948 GGGTATAATG
* *
8532958 GTAATTTTGC-ACCTAGGGGTATTCAA
1 GTAATTTTCCAACATAGGGGTATTCAA
8532984 GTAATTTTCCATACATAGGGGTATTCAA
1 GTAATTTTCCA-ACATAGGGGTATTCAA
8533012 GTAATTT
1 GTAATTT
8533019 AACTATTCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 9 0.29
28 22 0.71
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.38
Consensus pattern (27 bp):
GTAATTTTCCAACATAGGGGTATTCAA
Found at i:8535205 original size:3 final size:3
Alignment explanation
Indices: 8535197--8535261 Score: 60
Period size: 3 Copynumber: 21.7 Consensus size: 3
8535187 GGGGTTTAAA
* * * * * *
8535197 AAT AAT AAT ATT AAT AAT AAT GAT AGT AAT ATT AAT AAT AAT AAT TAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8535245 AAT AAT ACA- AAT AAT AA
1 AAT AAT A-AT AAT AAT AA
8535262 ATATTCTAAA
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
2 1 0.02
3 46 0.96
4 1 0.02
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:8535430 original size:3 final size:3
Alignment explanation
Indices: 8535424--8535466 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
8535414 AGAAAATATG
8535424 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
8535467 AAAATTGATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8537011 original size:46 final size:46
Alignment explanation
Indices: 8536957--8537222 Score: 147
Period size: 46 Copynumber: 5.9 Consensus size: 46
8536947 TCTACTCCAT
* * * *
8536957 TGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTATCTTGCTCTAC
1 TGCAACTTCAGGGAGATAAGGATTGTGTACTTTGATCCTGCTCTAC
* * * * * *
8537003 TGCAACTTCAGAGAGATAAGAATTGTG-GCTTCGAT-TTGCT-TCAA
1 TGCAACTTCAGGGAGATAAGGATTGTGTACTTTGATCCTGCTCT-AC
* * * * **
8537047 TGTAATTTCAGGGAGA-AGAGG-TT-TGTAGCTTCGAT-CTACTCCGC
1 TGCAACTTCAGGGAGATA-AGGATTGTGTA-CTTTGATCCTGCTCTAC
* * * * * * * * *
8537091 TGAAACTTAAAGGAGGTAAGAATTG-GTAATTTCAACCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGGATTGTGTACTTTGATCCTGCTCTAC
* * * * *
8537136 TACAACTTCAGGGAGATAAGGTTTGTGTATTTTTATCCTGCTCTAT
1 TGCAACTTCAGGGAGATAAGGATTGTGTACTTTGATCCTGCTCTAC
* *
8537182 TGCAACTTCAGAGAGATAAGGATTGTG-GCTTTGAT-CTGCTC
1 TGCAACTTCAGGGAGATAAGGATTGTGTACTTTGATCCTGCTC
8537223 CAATGTAATT
Statistics
Matches: 162, Mismatches: 48, Indels: 22
0.70 0.21 0.09
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
44 53 0.33
45 40 0.25
46 63 0.39
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (46 bp):
TGCAACTTCAGGGAGATAAGGATTGTGTACTTTGATCCTGCTCTAC
Found at i:8537151 original size:179 final size:178
Alignment explanation
Indices: 8536826--8537349 Score: 753
Period size: 179 Copynumber: 2.9 Consensus size: 178
8536816 TAATCCACTA
* * * * * * * *
8536826 CAACTTTAGGGAGATGAGACTTGTAGCTTCGATTTAC-TCTAATGTAATTTTAGGGAGAAGATAT
1 CAACTTCAGAGAGATAAGAATTGTGGCTTCGATTTGCTTC-AATGTAATTTCAGGGAGAAGAGAT
* * ** *
8536890 TTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGAATATAAGAATTGGTAATTTCAATCTACTCC
65 TTGTAGCTTCGATCTACTCCGCTGGAACTTAAAGGAGGTAAGAATTGGTAATTTCAA-CTGCTCC
* *
8536955 ATTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTATCTTGCTCTACTG
129 ACTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTATCCTGCTCTACTG
*
8537005 CAACTTCAGAGAGATAAGAATTGTGGCTTCGATTTGCTTCAATGTAATTTCAGGGAGAAGAGGTT
1 CAACTTCAGAGAGATAAGAATTGTGGCTTCGATTTGCTTCAATGTAATTTCAGGGAGAAGAGATT
*
8537070 TGTAGCTTCGATCTACTCCGCTGAAACTTAAAGGAGGTAAGAATTGGTAATTTCAACCTGCTCCA
66 TGTAGCTTCGATCTACTCCGCTGGAACTTAAAGGAGGTAAGAATTGGTAATTTCAA-CTGCTCCA
* *
8537135 CTACAACTTCAGGGAGATAAGGTTTGTGTATTTTTATCCTGCTCTATTG
130 CTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTATCCTGCTCTACTG
* * * * * *
8537184 CAACTTCAGAGAGATAAGGATTGTGGCTTTGATCTGCTCCAATGTAATTTCAGAGAGAAGAGATC
1 CAACTTCAGAGAGATAAGAATTGTGGCTTCGATTTGCTTCAATGTAATTTCAGGGAGAAGAGATT
* *
8537249 TGTAGCTTTGATCTACTCCGCTGGAACTTTAAGGAGGTAAGAATTGGTAATTTCAACTAGCTCCA
66 TGTAGCTTCGATCTACTCCGCTGGAACTTAAAGGAGGTAAGAATTGGTAATTTCAACT-GCTCCA
*
8537314 CTGCAACTTCAAGGAGATAAGGTTTGTGTATTTTTA
130 CTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTA
8537350 GCTTTAATCT
Statistics
Matches: 311, Mismatches: 32, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
178 2 0.01
179 307 0.99
180 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (178 bp):
CAACTTCAGAGAGATAAGAATTGTGGCTTCGATTTGCTTCAATGTAATTTCAGGGAGAAGAGATT
TGTAGCTTCGATCTACTCCGCTGGAACTTAAAGGAGGTAAGAATTGGTAATTTCAACTGCTCCAC
TGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTATCCTGCTCTACTG
Found at i:8538115 original size:46 final size:46
Alignment explanation
Indices: 8538057--8538250 Score: 244
Period size: 46 Copynumber: 4.2 Consensus size: 46
8538047 AAAATTTGGT
* * *
8538057 TTCTTCCATCCATCCTACTACAACTCAAGGGTATAGGATTTGTATC
1 TTCTTCAATCCATCCCACTACAACTCAGGGGTATAGGATTTGTATC
* *
8538103 ATCTTCAATCCATCCCACTACAACTCAGGGGTATAGAATTTGTATC
1 TTCTTCAATCCATCCCACTACAACTCAGGGGTATAGGATTTGTATC
** * * *
8538149 TTCTTCAATCCATCCCACTGTAGCTCATGGGTATAAGATTTGTATC
1 TTCTTCAATCCATCCCACTACAACTCAGGGGTATAGGATTTGTATC
* * * * **
8538195 TTCTTCAATCCATCCCACTGCAGCTCAGGGGTACAGGATTTTTGGC
1 TTCTTCAATCCATCCCACTACAACTCAGGGGTATAGGATTTGTATC
8538241 TTCTTCAATC
1 TTCTTCAATC
8538251 AATTGGTCAG
Statistics
Matches: 129, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 129 1.00
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (46 bp):
TTCTTCAATCCATCCCACTACAACTCAGGGGTATAGGATTTGTATC
Found at i:8541974 original size:74 final size:74
Alignment explanation
Indices: 8541853--8541997 Score: 281
Period size: 74 Copynumber: 2.0 Consensus size: 74
8541843 ATTTTGCTTC
*
8541853 ATCTCCATGTTCTGCAATTTGATTTTGTCAGGTGTCATGTCTACCACATGATTATATTGCTTCAT
1 ATCTCCATGTTCTGCAATTTGATTCTGTCAGGTGTCATGTCTACCACATGATTATATTGCTTCAT
8541918 AAAAGCACA
66 AAAAGCACA
8541927 ATCTCCATGTTCTGCAATTTGATTCTGTCAGGTGTCATGTCTACCACATGATTATATTGCTTCAT
1 ATCTCCATGTTCTGCAATTTGATTCTGTCAGGTGTCATGTCTACCACATGATTATATTGCTTCAT
8541992 AAAAGC
66 AAAAGC
8541998 TTGTGCTAAA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 70 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (74 bp):
ATCTCCATGTTCTGCAATTTGATTCTGTCAGGTGTCATGTCTACCACATGATTATATTGCTTCAT
AAAAGCACA
Found at i:8543431 original size:5 final size:5
Alignment explanation
Indices: 8543423--8543447 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8543413 ATGCAATCAT
8543423 AAACA AAACA AAACA AAACA AAACA
1 AAACA AAACA AAACA AAACA AAACA
8543448 TGTCAGTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACA
Found at i:8545080 original size:3 final size:3
Alignment explanation
Indices: 8545074--8545158 Score: 152
Period size: 3 Copynumber: 28.0 Consensus size: 3
8545064 GTCGTAGTAG
8545074 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
8545122 TAA TAA TAA TAA TAA TAA TAAA TAG TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
8545159 AAAATTTGAT
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
3 76 0.96
4 3 0.04
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8550655 original size:57 final size:59
Alignment explanation
Indices: 8550536--8550656 Score: 149
Period size: 58 Copynumber: 2.1 Consensus size: 59
8550526 AGTAATGGTG
* * *
8550536 AAATGGAGAAATAAGAAACATTTGAAAATGATTATGGTTTTCTCTAAAAATGAAAATAA
1 AAATGGAGAAATAAGAAACATTTGAAAATAAATATGGTTTTCTCCAAAAATGAAAATAA
* * * *
8550595 AAATGGAGAACT-AGAATA-ATTTGGAAATAAATATGGTTTTC-CCCAAAATGAAAATGA
1 AAATGGAGAAATAAGAA-ACATTTGAAAATAAATATGGTTTTCTCCAAAAATGAAAATAA
8550652 AAATG
1 AAATG
8550657 ACCTTAAAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
57 18 0.33
58 24 0.44
59 12 0.22
ACGTcount: A:0.50, C:0.07, G:0.17, T:0.27
Consensus pattern (59 bp):
AAATGGAGAAATAAGAAACATTTGAAAATAAATATGGTTTTCTCCAAAAATGAAAATAA
Found at i:8576050 original size:21 final size:21
Alignment explanation
Indices: 8576008--8576056 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
8575998 TAAGTACTTT
*
8576008 TTATTTTATTTTTCTTTATTA
1 TTATTTTATTTTACTTTATTA
*
8576029 TTATTTTAATTTTAGTTT-TTA
1 TTATTTT-ATTTTACTTTATTA
*
8576050 TAATTTT
1 TTATTTT
8576057 TATTGACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (21 bp):
TTATTTTATTTTACTTTATTA
Found at i:8577981 original size:33 final size:33
Alignment explanation
Indices: 8577944--8578013 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 33
8577934 TATTTATACA
8577944 ATTATAATATT-TTATT-TAAATT-AGTAGATATTT
1 ATTAT-ATATTATTATTAT-AATTAAG-AGATATTT
*
8577977 ATTATTTATTATTATTATAATTAAGAGATATTT
1 ATTATATATTATTATTATAATTAAGAGATATTT
8578010 ATTA
1 ATTA
8578014 ATTAAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
32 4 0.12
33 26 0.79
34 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (33 bp):
ATTATATATTATTATTATAATTAAGAGATATTT
Found at i:8578271 original size:12 final size:12
Alignment explanation
Indices: 8578256--8578299 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
8578246 AAAACAGGGG
8578256 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
8578268 AGAAAAAGGGAA
1 AGAAAAAGAGAA
*
8578280 AGAAAAAGAAAA
1 AGAAAAAGAGAA
8578292 AGGAAAAA
1 A-GAAAAA
8578300 CTAGAGATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
12 22 0.79
13 6 0.21
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:8578275 original size:6 final size:6
Alignment explanation
Indices: 8578256--8578299 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
8578246 AAAACAGGGG
* **
8578256 AGAAAA AGAGAA AGAAAA AGGGAA AGAAAA AGAAAA AGGAAAA A
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA A-GAAAA A
8578300 CTAGAGATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:8578287 original size:18 final size:18
Alignment explanation
Indices: 8578260--8578294 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8578250 CAGGGGAGAA
*
8578260 AAAGAGAAAGAAAAAGGG
1 AAAGAAAAAGAAAAAGGG
8578278 AAAGAAAAAGAAAAAGG
1 AAAGAAAAAGAAAAAGG
8578295 AAAAACTAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAGAAAAAGGG
Found at i:8579065 original size:40 final size:40
Alignment explanation
Indices: 8578996--8579081 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
8578986 AATTATGGGA
* * *
8578996 TACTAAATATTGTTTTGAATATTGAATTGAACTGTGAAAT
1 TACTAAATAATGTTATGAATATTGAATTGAACTGTAAAAT
* * * *
8579036 TACTGAATAATGTTATGTATATTGCATTGAGCTGTAAAAT
1 TACTAAATAATGTTATGAATATTGAATTGAACTGTAAAAT
*
8579076 TGCTAA
1 TACTAA
8579082 TGAAGTGAAT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (40 bp):
TACTAAATAATGTTATGAATATTGAATTGAACTGTAAAAT
Found at i:8579395 original size:45 final size:45
Alignment explanation
Indices: 8579289--8579395 Score: 142
Period size: 45 Copynumber: 2.4 Consensus size: 45
8579279 CGACTACTGT
* **
8579289 TACTGTTACCGTTACTATTACTGATTCAACACTTTGTGTGTCGAA
1 TACTGTTACCGTTACTGTTACAAATTCAACACTTTGTGTGTCGAA
* * *
8579334 TACTGTTACCGTTACTGTTACAAATTCAGCATTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACAAATTCAACACTTTGTGTGTCGAA
* *
8579379 TACTGTTGCTGTTACTG
1 TACTGTTACCGTTACTG
8579396 CTACTACTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACAAATTCAACACTTTGTGTGTCGAA
Found at i:8586480 original size:15 final size:15
Alignment explanation
Indices: 8586429--8586483 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
8586419 ACAACATAAT
* *
8586429 AATATAAGTGACTAA
1 AATATAAATAACTAA
*
8586444 AATAT-AAT-ACTTTA
1 AATATAAATAAC-TAA
8586458 AATATAAATAACTAA
1 AATATAAATAACTAA
8586473 AATATAAATAA
1 AATATAAATAA
8586484 GGTAAATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
13 2 0.06
14 9 0.26
15 21 0.62
16 2 0.06
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (15 bp):
AATATAAATAACTAA
Found at i:8590936 original size:2 final size:2
Alignment explanation
Indices: 8590929--8590959 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8590919 ATGAGGTAGA
8590929 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8590960 CACGTGTGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8591488 original size:3 final size:3
Alignment explanation
Indices: 8591480--8591522 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
8591470 ATTAAATATG
8591480 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
8591523 AGTGATGTAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8594402 original size:30 final size:32
Alignment explanation
Indices: 8594366--8594429 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
8594356 ATAGTAAAAA
*
8594366 TATTATTTTTA-A-AAAATTAAATTAAAATTT
1 TATTATTTTTAGAGAAAATTAAACTAAAATTT
* *
8594396 TATTATTTTTAGAGAAAGTTAAACTACAATTT
1 TATTATTTTTAGAGAAAATTAAACTAAAATTT
8594428 TA
1 TA
8594430 GTTTTATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 11 0.38
31 1 0.03
32 17 0.59
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (32 bp):
TATTATTTTTAGAGAAAATTAAACTAAAATTT
Found at i:8600152 original size:34 final size:35
Alignment explanation
Indices: 8600113--8600183 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
8600103 TTTGGAGACG
8600113 GGAGAAACTGTATT-ACAAATTGAAAGATGAAAAA
1 GGAGAAACTGTATTCACAAATTGAAAGATGAAAAA
* *
8600147 GGAGAAACTGTATTCACAAATTGAAATATGAAGAA
1 GGAGAAACTGTATTCACAAATTGAAAGATGAAAAA
8600182 GG
1 GG
8600184 GAGAGAAACG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
34 14 0.41
35 20 0.59
ACGTcount: A:0.49, C:0.07, G:0.23, T:0.21
Consensus pattern (35 bp):
GGAGAAACTGTATTCACAAATTGAAAGATGAAAAA
Found at i:8605894 original size:37 final size:37
Alignment explanation
Indices: 8605844--8605918 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
8605834 AATTTGTCAC
*
8605844 CTCATCATGTTTATTTCCTATTAGTCATATACCATGT
1 CTCATCATGTTTATTTCCTATCAGTCATATACCATGT
*
8605881 CTCATCATGTTTATTTTCTATCAGTCATATACCATGT
1 CTCATCATGTTTATTTCCTATCAGTCATATACCATGT
8605918 C
1 C
8605919 ATATGACGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.23, G:0.08, T:0.45
Consensus pattern (37 bp):
CTCATCATGTTTATTTCCTATCAGTCATATACCATGT
Found at i:8618743 original size:13 final size:13
Alignment explanation
Indices: 8618722--8618756 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
8618712 AACAAAATGA
*
8618722 GCCAAATGCTATG
1 GCCATATGCTATG
8618735 GCCATATGCTATG
1 GCCATATGCTATG
*
8618748 ACCATATGC
1 GCCATATGC
8618757 ATGTAGACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (13 bp):
GCCATATGCTATG
Found at i:8624770 original size:11 final size:11
Alignment explanation
Indices: 8624756--8624808 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
8624746 AGATAAATAT
8624756 TATTTTATTAA
1 TATTTTATTAA
*
8624767 TATTTTAATAA
1 TATTTTATTAA
* * *
8624778 GATATT-TTAT
1 TATTTTATTAA
*
8624788 TATTTTATTAT
1 TATTTTATTAA
8624799 TATTTTATTA
1 TATTTTATTA
8624809 GTATATAAAG
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
10 6 0.18
11 28 0.82
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:8626510 original size:33 final size:33
Alignment explanation
Indices: 8626396--8626551 Score: 86
Period size: 33 Copynumber: 4.7 Consensus size: 33
8626386 AATTGATAGA
* * * * * *
8626396 TAAGACCATGGTTGGGTCATGGCAATATATGTT
1 TAAGACCATAGCTGGGACATGGCAATACAAGTG
** *
8626429 TAAGACCATAGCTATG-CTATGGC-ATCCTAA-TG
1 TAAGACCATAGCTGGGAC-ATGGCAATAC-AAGTG
* * *
8626461 ATAAGACCATATCTGGGATATGGCACTACAAGTG
1 -TAAGACCATAGCTGGGACATGGCAATACAAGTG
* * * *
8626495 TAAGACCATGGCTGGGCCATGGGAATACATGTG
1 TAAGACCATAGCTGGGACATGGCAATACAAGTG
* *
8626528 TAAGACTATAG-TTGGACTATGGCA
1 TAAGACCATAGCTGGGAC-ATGGCA
8626552 TCATGCCAGA
Statistics
Matches: 90, Mismatches: 26, Indels: 14
0.69 0.20 0.11
Matches are distributed among these distances:
32 8 0.09
33 78 0.87
34 4 0.04
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (33 bp):
TAAGACCATAGCTGGGACATGGCAATACAAGTG
Found at i:8626708 original size:91 final size:91
Alignment explanation
Indices: 8626613--8626821 Score: 240
Period size: 91 Copynumber: 2.3 Consensus size: 91
8626603 TTCAGATATG
* * ** * *
8626613 TAAGACTATAGTTGAAAGATACTATGACAATATGATGAGAAATGAATAAGACCATGATTGAAAGA
1 TAAGAC-ATAGTTGGAAGATACTATGACAACATGACAAAAAATGAATAAAACCATGATTGAAAGA
8626678 TACCATGGCAA-ATGACAAAAAACGAA
65 TACCATGGCAACATGACAAAAAACGAA
* * * * *
8626704 TAAGACCATGGTTGGAAGATACCATGGCAACATGACAAAAAATGAATAAAACTATGGTTGAAAGA
1 TAAGA-CATAGTTGGAAGATACTATGACAACATGACAAAAAATGAATAAAACCATGATTGAAAGA
** *
8626769 TACCATGGCAACATGACAGGAAATGAA
65 TACCATGGCAACATGACAAAAAACGAA
* *
8626796 TAAAAACATAGTTGGAAGACACTATG
1 T-AAGACATAGTTGGAAGATACTATG
8626822 GCATCATGTC
Statistics
Matches: 97, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
91 63 0.65
92 31 0.32
93 3 0.03
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.20
Consensus pattern (91 bp):
TAAGACATAGTTGGAAGATACTATGACAACATGACAAAAAATGAATAAAACCATGATTGAAAGAT
ACCATGGCAACATGACAAAAAACGAA
Found at i:8626711 original size:45 final size:46
Alignment explanation
Indices: 8626613--8626798 Score: 230
Period size: 46 Copynumber: 4.1 Consensus size: 46
8626603 TTCAGATATG
* * * * * ** *
8626613 TAAGACTATAGTTGAAAGATACTATGACAATATGATGAGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAA
* *
8626659 TAAGACCATGATTGAAAGATACCATGGCAA-ATGACAAAAAACGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAA
*
8626704 TAAGACCATGGTTGGAAGATACCATGGCAACATGACAAAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAA
* * **
8626750 TAAAACTATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAA
8626796 TAA
1 TAA
8626799 AAACATAGTT
Statistics
Matches: 122, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
45 39 0.32
46 83 0.68
ACGTcount: A:0.48, C:0.12, G:0.20, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAA
Found at i:8626799 original size:46 final size:46
Alignment explanation
Indices: 8626623--8626829 Score: 227
Period size: 46 Copynumber: 4.5 Consensus size: 46
8626613 TAAGACTATA
* * * ** * *
8626623 GTTGAAAGATACTATGACAATATGATGAGAAATGAATAAGACCATG
1 GTTGAAAGATACCATGGCAACATGACAAAAAATGAATAAAACCATG
* * *
8626669 ATTGAAAGATACCATGGCAA-ATGACAAAAAACGAATAAGACCATG
1 GTTGAAAGATACCATGGCAACATGACAAAAAATGAATAAAACCATG
* *
8626714 GTTGGAAGATACCATGGCAACATGACAAAAAATGAATAAAACTATG
1 GTTGAAAGATACCATGGCAACATGACAAAAAATGAATAAAACCATG
** * *
8626760 GTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAAAACATA
1 GTTGAAAGATACCATGGCAACATGACAAAAAATGAATAAAACCATG
* * * *
8626806 GTTGGAAGACACTATGGCATCATG
1 GTTGAAAGATACCATGGCAACATG
8626830 TCGAAGATAA
Statistics
Matches: 138, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
45 39 0.28
46 99 0.72
ACGTcount: A:0.46, C:0.13, G:0.21, T:0.20
Consensus pattern (46 bp):
GTTGAAAGATACCATGGCAACATGACAAAAAATGAATAAAACCATG
Found at i:8626849 original size:91 final size:91
Alignment explanation
Indices: 8626652--8626851 Score: 231
Period size: 91 Copynumber: 2.2 Consensus size: 91
8626642 ATATGATGAG
* * * * * *
8626652 AAATGAATAAGACCATGATTGAAAGATACCATGGCAAATGACAAAAAACGAATAAGACCATGGTT
1 AAATAAATAAGACTATGGTTGAAAGATACCATGGCAAATGACAAAAAACGAATAAAAACATAGTT
*
8626717 GGAAGATACCATGGCAACATGACAAA
66 GGAAGACACCATGGCAACATGACAAA
* * ** *
8626743 AAATGAATAAAACTATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAAAACATAGT
1 AAATAAATAAGACTATGGTTGAAAGATACCATGGCAA-ATGACAAAAAACGAATAAAAACATAGT
* * * *
8626808 TGGAAGACACTATGGCATCATGTC-GA
65 TGGAAGACACCATGGCAACATGACAAA
*
8626834 AGATAAATAAGACTATGG
1 AAATAAATAAGACTATGG
8626852 ATGGGAGACG
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
91 50 0.55
92 41 0.45
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.19
Consensus pattern (91 bp):
AAATAAATAAGACTATGGTTGAAAGATACCATGGCAAATGACAAAAAACGAATAAAAACATAGTT
GGAAGACACCATGGCAACATGACAAA
Found at i:8631749 original size:8 final size:8
Alignment explanation
Indices: 8631738--8631772 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
8631728 TTTTTAATTC
8631738 TTTATTAT
1 TTTATTAT
*
8631746 TTTATCAT
1 TTTATTAT
8631754 TTTATTAT
1 TTTATTAT
8631762 TTTATTAT
1 TTTATTAT
8631770 TTT
1 TTT
8631773 CTTTAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTATTAT
Found at i:8632200 original size:18 final size:18
Alignment explanation
Indices: 8632172--8632206 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8632162 GACTTATTAT
8632172 TTATTCTTTTTA-TTTTG
1 TTATTCTTTTTACTTTTG
8632189 TTATTACTTTTTACTTTT
1 TTATT-CTTTTTACTTTT
8632207 ATTTTAGCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 7 0.44
19 4 0.25
ACGTcount: A:0.14, C:0.09, G:0.03, T:0.74
Consensus pattern (18 bp):
TTATTCTTTTTACTTTTG
Found at i:8632297 original size:17 final size:18
Alignment explanation
Indices: 8632267--8632307 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
8632257 TTCATTTTAG
8632267 TTTGATTCAATTTT-TGA
1 TTTGATTCAATTTTATGA
8632284 TTTGATT-AAGTTTTATGA
1 TTTGATTCAA-TTTTATGA
8632302 TGTTGA
1 T-TTGA
8632308 GTTGCATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 2 0.10
17 11 0.52
18 4 0.19
19 4 0.19
ACGTcount: A:0.24, C:0.02, G:0.17, T:0.56
Consensus pattern (18 bp):
TTTGATTCAATTTTATGA
Found at i:8633351 original size:6 final size:6
Alignment explanation
Indices: 8633335--8633388 Score: 54
Period size: 6 Copynumber: 8.5 Consensus size: 6
8633325 GTTTTATTTG
* * *
8633335 TTTTAT ATTTAT TTTTAT CTTTAT TTTTAT TTTTGGTT GTTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT--AT -TTTTAT TTTTAT
8633386 TTT
1 TTT
8633389 CTTAGACTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
6 33 0.85
7 1 0.03
8 1 0.03
9 4 0.10
ACGTcount: A:0.15, C:0.02, G:0.06, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:8638251 original size:71 final size:71
Alignment explanation
Indices: 8638129--8638298 Score: 207
Period size: 71 Copynumber: 2.4 Consensus size: 71
8638119 CAACCAAATG
* * * * *
8638129 CTACTAATACCGTGAGGACTTCTATCGAAACAAGTTAAGCCAGTAGCCAAAGTTCAACATCTCAT
1 CTACTGATACCTTGAGGACTTCTACCGAAACAAGTCAAGCCAGTAGCCAAAGTTCAACATCCCAT
*
8638194 GCATTT
66 GCACTT
** * *
8638200 CTA-TCGATACCTTGAGGACTTCTACCGAAACAAGTCAAGTTAGTAGCCAAAGTTCAGCATCCCC
1 CTACT-GATACCTTGAGGACTTCTACCGAAACAAGTCAAGCCAGTAGCCAAAGTTCAACATCCCA
8638264 TGCACTT
65 TGCACTT
* * *
8638271 CTACTGATACTTTGATGAGTTCTACCGA
1 CTACTGATACCTTGAGGACTTCTACCGA
8638299 TACCAAATGA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
70 1 0.01
71 82 0.98
72 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (71 bp):
CTACTGATACCTTGAGGACTTCTACCGAAACAAGTCAAGCCAGTAGCCAAAGTTCAACATCCCAT
GCACTT
Found at i:8642559 original size:16 final size:16
Alignment explanation
Indices: 8642497--8642565 Score: 61
Period size: 16 Copynumber: 4.3 Consensus size: 16
8642487 CCCCAAATAC
*
8642497 TAAAATCCCTAATTCG
1 TAAAATCCCTAAATCG
* *
8642513 TCAAATTCCCTAAATTG
1 T-AAAATCCCTAAATCG
* *
8642530 TGAAA-CCTCCAAATCG
1 TAAAATCC-CTAAATCG
8642546 TAAAATCCCTAAATC-
1 TAAAATCCCTAAATCG
8642561 TAAAA
1 TAAAA
8642566 CATCTGAAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
15 7 0.17
16 19 0.46
17 15 0.37
ACGTcount: A:0.42, C:0.25, G:0.06, T:0.28
Consensus pattern (16 bp):
TAAAATCCCTAAATCG
Found at i:8643579 original size:50 final size:50
Alignment explanation
Indices: 8643485--8643582 Score: 119
Period size: 50 Copynumber: 2.0 Consensus size: 50
8643475 ATATGTTTGT
* * * *
8643485 TTATGTTTGGAACTAATGACCAATTTTAGTTTTTTTTATGTAATTTAACA
1 TTATGCTTGGAACTAATGACCAATATTAGTGTTGTTTATGTAATTTAACA
*
8643535 TTATGCTTGGAAGTAATGACCAATATT-G-GTTGTTTATGCTTAATTTAA
1 TTATGCTTGGAACTAATGACCAATATTAGTGTTGTTTATG--TAATTTAA
8643583 TTTAGCTTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
48 8 0.20
49 1 0.02
50 32 0.78
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.47
Consensus pattern (50 bp):
TTATGCTTGGAACTAATGACCAATATTAGTGTTGTTTATGTAATTTAACA
Found at i:8650689 original size:33 final size:33
Alignment explanation
Indices: 8650578--8650716 Score: 108
Period size: 33 Copynumber: 4.2 Consensus size: 33
8650568 GTAGTAGACA
* * * *
8650578 CACCCTCCTCATCAGCTTGTGCCCC-TCTTACAT
1 CACCCTCCTCATCAGATTCTACCCCTTCAT-CAT
* * *
8650611 CATCCTCCTCA-CAGATTCTACCCTTTCCA-GAT
1 CACCCTCCTCATCAGATTCTACCCCTT-CATCAT
*
8650643 CACCTTCGC-CATCAGATTCTACCCCTTCATCAT
1 CACCCTC-CTCATCAGATTCTACCCCTTCATCAT
* * *
8650676 CACCCTCCTCATCA-ACTTCTACCCTTTTAACAT
1 CACCCTCCTCATCAGA-TTCTACCCCTTCATCAT
8650709 CACCCTCC
1 CACCCTCC
8650717 CCAACAGTCA
Statistics
Matches: 84, Mismatches: 15, Indels: 14
0.74 0.13 0.12
Matches are distributed among these distances:
32 22 0.26
33 61 0.73
34 1 0.01
ACGTcount: A:0.20, C:0.45, G:0.05, T:0.30
Consensus pattern (33 bp):
CACCCTCCTCATCAGATTCTACCCCTTCATCAT
Found at i:8653242 original size:55 final size:55
Alignment explanation
Indices: 8653181--8653288 Score: 191
Period size: 56 Copynumber: 2.0 Consensus size: 55
8653171 ATTATAGATC
*
8653181 ACAAA-TTAATTATTCATGAGCACTATTCAAATTAAAAGTGATGATTTATCATCTT
1 ACAAATTTAATTATTCATAAGCACTATTCAAATT-AAAGTGATGATTTATCATCTT
8653236 ACAAATTTAATTATTCATAAGCACTATTCAAATTAAAGTGATGATTTATCATC
1 ACAAATTTAATTATTCATAAGCACTATTCAAATTAAAGTGATGATTTATCATC
8653289 CAATAGATAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
55 24 0.47
56 27 0.53
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.38
Consensus pattern (55 bp):
ACAAATTTAATTATTCATAAGCACTATTCAAATTAAAGTGATGATTTATCATCTT
Found at i:8658236 original size:56 final size:56
Alignment explanation
Indices: 8658171--8658279 Score: 184
Period size: 57 Copynumber: 1.9 Consensus size: 56
8658161 TTATAGATTG
* *
8658171 CAAATTAATTATTCATAAGCACTTTTC-AAATTAAAAGTGATGATTTATCATCTTA
1 CAAATTAATTATTCATAAGCACTATTCTAAATTAAAAGGGATGATTTATCATCTTA
8658226 CAAATTTAATTATTCATAAGCACTATTCTAAATTAAAAGGGATGATTTATCATC
1 CAAA-TTAATTATTCATAAGCACTATTCTAAATTAAAAGGGATGATTTATCATC
8658280 CAATGGATAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
55 4 0.08
56 22 0.44
57 24 0.48
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.39
Consensus pattern (56 bp):
CAAATTAATTATTCATAAGCACTATTCTAAATTAAAAGGGATGATTTATCATCTTA
Found at i:8659176 original size:76 final size:76
Alignment explanation
Indices: 8659051--8659355 Score: 472
Period size: 76 Copynumber: 4.1 Consensus size: 76
8659041 CCATTTTGGT
* * *
8659051 ATTTAATT-TTTTTTTTGGATTATTGTTGTAAAAGAACTACATTTTACAAATGTTGAATATTTGT
1 ATTTAATTAATTTTTTTGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTTGAATATCTGT
8659115 TACATAATAAA
66 TACATAATAAA
* * *
8659126 ATTTAATTAATTTTTTTGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTTGAAAACCGGT
1 ATTTAATTAATTTTTTTGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTTGAATATCTGT
8659191 TACATAATAAA
66 TACATAATAAA
* *
8659202 ATTTAATTAA-TTTTTTGGATTATTGTGG-AAAAAAACTATATTTTACAAATGTTGAATATCTGT
1 ATTTAATTAATTTTTTTGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTTGAATATCTGT
8659265 TACATAATAAA
66 TACATAATAAA
** * * *
8659276 ATTTAATTACCTTTTTAGGATTATTGTGGTAAAAGAATTACATTTTACAAATGTTGAATATATGT
1 ATTTAATTAATTTTTTTGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTTGAATATCTGT
8659341 TACATAATAAA
66 TACATAATAAA
8659352 ATTT
1 ATTT
8659356 TTTTTATTAG
Statistics
Matches: 210, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
74 50 0.24
75 43 0.20
76 117 0.56
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (76 bp):
ATTTAATTAATTTTTTTGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTTGAATATCTGT
TACATAATAAA
Found at i:8659254 original size:150 final size:151
Alignment explanation
Indices: 8659051--8659355 Score: 477
Period size: 150 Copynumber: 2.0 Consensus size: 151
8659041 CCATTTTGGT
** * * *
8659051 ATTTAATTTTTTTTTTGGATTATTGTTGTAAAAGAACTACATTTTACAAATGTTGAATATTTGTT
1 ATTTAATTAATTTTTTGGATTATTGTTGGAAAAAAACTACATTTTACAAATGTTGAATATCTGTT
* *
8659116 ACATAATAAAATTTAATTAATTTTTTTGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTT
66 ACATAATAAAATTTAATTAACTTTTTAGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTT
*
8659181 GAAAACCGGTTACATAATAAA
131 GAAAACAGGTTACATAATAAA
*
8659202 ATTTAATTAATTTTTTGGATTATTG-TGGAAAAAAACTATATTTTACAAATGTTGAATATCTGTT
1 ATTTAATTAATTTTTTGGATTATTGTTGGAAAAAAACTACATTTTACAAATGTTGAATATCTGTT
* *
8659266 ACATAATAAAATTTAATTACCTTTTTAGGATTATTGTGGTAAAAGAATTACATTTTACAAATGTT
66 ACATAATAAAATTTAATTAACTTTTTAGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTT
* * *
8659331 GAATATATGTTACATAATAAA
131 GAAAACAGGTTACATAATAAA
8659352 ATTT
1 ATTT
8659356 TTTTTATTAG
Statistics
Matches: 140, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
150 117 0.84
151 23 0.16
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (151 bp):
ATTTAATTAATTTTTTGGATTATTGTTGGAAAAAAACTACATTTTACAAATGTTGAATATCTGTT
ACATAATAAAATTTAATTAACTTTTTAGGATTATTGTGGTAAAAGAACTACATTTTACAAATGTT
GAAAACAGGTTACATAATAAA
Found at i:8662807 original size:26 final size:26
Alignment explanation
Indices: 8662778--8662846 Score: 75
Period size: 28 Copynumber: 2.6 Consensus size: 26
8662768 ATAATCAATA
* *
8662778 CATGTTATTAATTGTGTTACTACCTT
1 CATGTTATTAATTGTGTTACTACATC
* * *
8662804 CATGTTATTTTAATCGTTTTACTATATC
1 CATGTTA--TTAATTGTGTTACTACATC
8662832 CATGTTATTAATTGT
1 CATGTTATTAATTGT
8662847 ACAGTTCATC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
26 14 0.40
28 21 0.60
ACGTcount: A:0.25, C:0.13, G:0.10, T:0.52
Consensus pattern (26 bp):
CATGTTATTAATTGTGTTACTACATC
Found at i:8667032 original size:50 final size:52
Alignment explanation
Indices: 8666978--8667074 Score: 162
Period size: 50 Copynumber: 1.9 Consensus size: 52
8666968 ACTAATATCA
*
8666978 CCCATCTCTTTCCCTCTACCCCTAAAAAAT-ATTTTT-TTATACTGGTGCTG
1 CCCATCTCTCTCCCTCTACCCCTAAAAAATAATTTTTGTTATACTGGTGCTG
*
8667028 CCCATCTCTCTCCCTCTACCCTTAAAAAATAATTTTTGTTATACTGG
1 CCCATCTCTCTCCCTCTACCCCTAAAAAATAATTTTTGTTATACTGG
8667075 CGCCACTCCA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
50 28 0.65
51 6 0.14
52 9 0.21
ACGTcount: A:0.24, C:0.30, G:0.07, T:0.39
Consensus pattern (52 bp):
CCCATCTCTCTCCCTCTACCCCTAAAAAATAATTTTTGTTATACTGGTGCTG
Found at i:8667108 original size:53 final size:51
Alignment explanation
Indices: 8666976--8667118 Score: 150
Period size: 50 Copynumber: 2.8 Consensus size: 51
8666966 ATACTAATAT
* * * *
8666976 CACCCATCTCTTTCCCTCTACCCCTAAAAAAT-ATTTTTTTATACTGGTGC
1 CACCCATCTCTCTCCCTCCACCCTTAAAAAATAATTTTTTTATACTGGCGC
** *
8667026 TGCCCATCTCTCTCCCTCTACCCTTAAAAAATAATTTTTGTTATACTGGCGC
1 CACCCATCTCTCTCCCTCCACCCTTAAAAAATAATTTTT-TTATACTGGCGC
*
8667078 CACTCCATCTC-C-CCCTTTCCACCGTT-AAAAATAATTTTTTT
1 CAC-CCATCTCTCTCCC--TCCACCCTTAAAAAATAATTTTTTT
8667119 TTAAAAACAC
Statistics
Matches: 79, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
50 28 0.35
51 11 0.14
52 26 0.33
53 14 0.18
ACGTcount: A:0.24, C:0.32, G:0.06, T:0.38
Consensus pattern (51 bp):
CACCCATCTCTCTCCCTCCACCCTTAAAAAATAATTTTTTTATACTGGCGC
Found at i:8683457 original size:10 final size:9
Alignment explanation
Indices: 8683441--8683471 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
8683431 ATTTGTGAAA
8683441 AAATAAAAT
1 AAATAAAAT
8683450 ATAATAAAAT
1 A-AATAAAAT
8683460 AAATAAAAT
1 AAATAAAAT
8683469 AAA
1 AAA
8683472 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAATAAAAT
Found at i:8687373 original size:2 final size:2
Alignment explanation
Indices: 8687366--8687395 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8687356 AAGTAAAATA
8687366 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8687396 GTATCATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8690755 original size:10 final size:10
Alignment explanation
Indices: 8690740--8690764 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8690730 ACCAAGCATT
8690740 TATAAATATA
1 TATAAATATA
8690750 TATAAATATA
1 TATAAATATA
8690760 TATAA
1 TATAA
8690765 GCTTACAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
TATAAATATA
Found at i:8695628 original size:40 final size:40
Alignment explanation
Indices: 8695543--8695693 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
8695533 AATTGAATGA
* * *
8695543 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
8695583 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
8695624 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
8695663 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
8695694 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:8695707 original size:40 final size:40
Alignment explanation
Indices: 8695579--8695709 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
8695569 TATGCTGGAA
* * *
8695579 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
8695619 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
8695659 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
8695699 ATTATATCCGG
1 ATTATATCCGG
8695710 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:8702214 original size:13 final size:13
Alignment explanation
Indices: 8702196--8702223 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8702186 GTTCGGCAGG
8702196 GACACGCTCATAT
1 GACACGCTCATAT
8702209 GACACGCTCATAT
1 GACACGCTCATAT
8702222 GA
1 GA
8702224 GATTACTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (13 bp):
GACACGCTCATAT
Done.