Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 294 of 770
Found at i:89750164 original size:40 final size:40
Alignment explanation
Indices: 89750105--89750246 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
89750095 AAATTGAATG
* * *
89750105 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
89750145 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
89750185 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
89750225 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
89750247 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 3 0.04
40 82 0.96
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:89750270 original size:40 final size:39
Alignment explanation
Indices: 89750143--89750272 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
89750133 ATGCTGGAAA
* * *
89750143 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
89750184 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
89750222 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
89750263 TTATATCCGG
1 TTATATCCGG
89750273 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:89751388 original size:46 final size:46
Alignment explanation
Indices: 89751338--89751513 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
89751328 TGGTTGAGCA
89751338 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
89751384 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
89751429 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
89751477 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89751514 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:89751494 original size:93 final size:93
Alignment explanation
Indices: 89751335--89751506 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
89751325 GGATGGTTGA
* *
89751335 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
89751400 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
89751428 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
89751493 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
89751507 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:89758498 original size:46 final size:46
Alignment explanation
Indices: 89758448--89758623 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
89758438 TGGTTGAGCA
89758448 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
89758494 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
89758539 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
89758587 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89758624 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:89758604 original size:93 final size:93
Alignment explanation
Indices: 89758445--89758616 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
89758435 GGATGGTTGA
* * *
89758445 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
89758510 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
89758538 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
89758603 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
89758617 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:89762427 original size:27 final size:28
Alignment explanation
Indices: 89762397--89762466 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
89762387 ATAGTGAATC
*
89762397 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
89762424 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
89762452 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
89762467 GTACAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:89767930 original size:46 final size:43
Alignment explanation
Indices: 89767853--89767977 Score: 133
Period size: 46 Copynumber: 2.8 Consensus size: 43
89767843 CATTGGGTGG
* * *
89767853 TATGTGAGCCAGTGTAAGACATATCTAGGACATCCATCGGCTACAT
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATCCATCGG---CAT
* *
89767899 TATGAGAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCAT
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATCCATCGGCAT
* *
89767942 TAAGACTAGAGCTAGTGTAAGACATGTCTGGGACAT
1 TATG---AGAGCCAGTGTAAGACATGTCTGGGACAT
89767978 GCATTGGCCT
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
43 6 0.09
46 62 0.91
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (43 bp):
TATGAGAGCCAGTGTAAGACATGTCTGGGACATCCATCGGCAT
Found at i:89768125 original size:49 final size:49
Alignment explanation
Indices: 89768044--89768176 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 49
89768034 CTTGTTGTGT
* * *
89768044 GTCAGTGTAAGACCTGTTTGGGACCTGGCATCGACAC-CGATAGATGAGA
1 GTCAGTGTAAGACCTGTTTGGGACATGACATCGAC-CTCGATAGATGAAA
* * * *
89768093 G-CTAGTGTAAGACTTGTCTGGGACATGACATCGGCCTCGATATATGAAA
1 GTC-AGTGTAAGACCTGTTTGGGACATGACATCGACCTCGATAGATGAAA
*
89768142 GTCAGTGTAAGACCTGTTTGGGACACGACATCGAC
1 GTCAGTGTAAGACCTGTTTGGGACATGACATCGAC
89768177 TTTAATGTAA
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
48 2 0.03
49 67 0.96
50 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTTTGGGACATGACATCGACCTCGATAGATGAAA
Found at i:89768166 original size:142 final size:138
Alignment explanation
Indices: 89767908--89768166 Score: 353
Period size: 142 Copynumber: 1.8 Consensus size: 138
89767898 TTATGAGAGC
* **
89767908 CAGTGTAAGACATGTTTGGGACATGCATCGGCATTAAGACTAGAGCTAGTGTAAGACATGTCTGG
1 CAGTGTAAGACATGTTTGGGACATGCATCGACACGAAGACTAGAGCTAGTGTAAGACATGTCTGG
* *
89767973 GACATGCATTGGCCTCGAGATATACAAGCTAGTGTAGGACCTGTTTGGGACATGGCGTCAGCTTG
66 GACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTTTGGGACATGGCGTCAGCTTG
89768038 TTGTGTGT
131 TTGTGTGT
* * *
89768046 CAGTGTAAGACCTGTTTGGGACCTGGCATCGACACCGATAGA-TGAGAGCTAGTGTAAGACTTGT
1 CAGTGTAAGACATGTTTGGGACAT-GCATCGACA-CGA-AGACT-AGAGCTAGTGTAAGACATGT
*
89768110 CTGGGACATGACATCGGCCTCGATATATGA-AAG-TCAGTGTAAGACCTGTTTGGGACA
62 CTGGGACATG-CATCGGCCTCGAGATAT-ACAAGCT-AGTGTAAGACCTGTTTGGGACA
89768167 CGACATCGAC
Statistics
Matches: 105, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
138 22 0.21
139 8 0.08
140 2 0.02
141 33 0.31
142 39 0.37
143 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.27
Consensus pattern (138 bp):
CAGTGTAAGACATGTTTGGGACATGCATCGACACGAAGACTAGAGCTAGTGTAAGACATGTCTGG
GACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTTTGGGACATGGCGTCAGCTTG
TTGTGTGT
Found at i:89771994 original size:30 final size:30
Alignment explanation
Indices: 89771958--89772017 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
89771948 TTTTACGAGC
* *
89771958 TTAGGGGGAAAAGTGTAATTATGATAAAAT
1 TTAGGGGCAAAAATGTAATTATGATAAAAT
*
89771988 TTAGGGGCAAAAATGTAATTTTGATAAAAT
1 TTAGGGGCAAAAATGTAATTATGATAAAAT
89772018 ATGACATTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.43, C:0.02, G:0.23, T:0.32
Consensus pattern (30 bp):
TTAGGGGCAAAAATGTAATTATGATAAAAT
Found at i:89772400 original size:42 final size:42
Alignment explanation
Indices: 89772353--89772459 Score: 110
Period size: 42 Copynumber: 2.5 Consensus size: 42
89772343 AGATTCTGTG
* *
89772353 TAAGACCATATCCGGGATATGGCCTCGGTATG-TGATTTCGTA
1 TAAGACCATATCCGGGATATGGCCTCGATATGAT-ATTTCATA
* * * * *
89772395 TAAGACCATGT-CGAGGACATGTCGTCGATATGATATTTCATG
1 TAAGACCATATCCG-GGATATGGCCTCGATATGATATTTCATA
*
89772437 TAAGACCATATCGGGGATATGGC
1 TAAGACCATATCCGGGATATGGC
89772460 ATTGAAACAA
Statistics
Matches: 51, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
41 2 0.04
42 47 0.92
43 2 0.04
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCCGGGATATGGCCTCGATATGATATTTCATA
Found at i:89782343 original size:55 final size:53
Alignment explanation
Indices: 89782256--89782510 Score: 263
Period size: 55 Copynumber: 4.8 Consensus size: 53
89782246 ATTAGGGTTT
*
89782256 AAGGATAACATGTAAGACCATGCCAATG-CATGGCAATTGGTAAGATTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAA-GACATGGCAA-TGGTAAG-TTTCTAAGGC
* * * *
89782311 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAAGTTACTATAAGAC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT--TCTAAGGC
* * * *
89782366 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCACTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTC-TAAGGC
* * *
89782419 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTCTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCTAAGGC
* * *
89782468 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG
89782511 GTACCTATGT
Statistics
Matches: 169, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 39 0.23
54 10 0.06
55 70 0.41
56 4 0.02
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCTAAGGC
Found at i:89782455 original size:108 final size:109
Alignment explanation
Indices: 89782264--89782462 Score: 321
Period size: 108 Copynumber: 1.8 Consensus size: 109
89782254 TTAAGGATAA
* * *
89782264 CATGTAAGACCATGCCAATGCATGGCAATTGGTAAGATTTCTAAGGCAAGGATACCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCAACTGGT-AGAGTTCTAAGGCAAGGATACCATGTAAGAC
89782329 CATGTCAAGACATGGCAATGATAAGTTACTATAAGACAAAGGTCC
65 CATGTCAAGACATGGCAATGATAAGTTACTATAAGACAAAGGTCC
89782374 CATGTAAGACCATGCCAAGGCATGGC-ACTGGT-GAGTTCATAAGGCAAGGATACCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCAACTGGTAGAGTTC-TAAGGCAAGGATACCATGTAAGAC
* *
89782437 CATGTCGAGACATGGCAATGGTAAGT
65 CATGTCAAGACATGGCAATGATAAGT
89782463 CTCAAAAGGA
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 5 0.06
108 48 0.58
109 5 0.06
110 25 0.30
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.22
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCAACTGGTAGAGTTCTAAGGCAAGGATACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTATAAGACAAAGGTCC
Found at i:89782723 original size:16 final size:16
Alignment explanation
Indices: 89782702--89782732 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
89782692 ATAAATTTGA
89782702 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
89782718 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
89782733 ACTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:89785486 original size:50 final size:50
Alignment explanation
Indices: 89785369--89785648 Score: 242
Period size: 50 Copynumber: 5.6 Consensus size: 50
89785359 TGTGAGAACT
* * * * *
89785369 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT--ATTTAGGTCA
* * * **
89785421 CGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATATTTAGGTTG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATATTTAGGTCA
* * ** * * * * *
89785471 CATGTGTAGTACTAAGTGCAAGCTACTATGCATACCCGACAACTTCA-ATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TA-TTTAGGTCA
* * **
89785522 CGTGTGTAGTATTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATATTTAGGTCA
* * * *
89785572 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCA-A-ATTGTTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATATT-TAGGTCA
*
89785621 CATGTGTAGTACTAAGTGTAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
89785649 TACGTACCAG
Statistics
Matches: 184, Mismatches: 40, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
48 1 0.01
49 35 0.19
50 79 0.43
51 33 0.18
52 36 0.20
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATATTTAGGTCA
Found at i:89785548 original size:101 final size:101
Alignment explanation
Indices: 89785418--89785599 Score: 274
Period size: 101 Copynumber: 1.8 Consensus size: 101
89785408 TGGTTTTAGG
* **
89785418 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATATTTAGGTTGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
89785483 TAAGTGCAAGCTACTATGCATACCCGACAACTTCAA
66 TAAGTGCAAGCTACTATGCATACCCGACAACTTCAA
* * * * *
89785519 TCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
* *
89785584 TAAGTGTAGGCTACTA
66 TAAGTGCAAGCTACTA
89785600 CGTGTATCAA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 71 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
TAAGTGCAAGCTACTATGCATACCCGACAACTTCAA
Found at i:89795733 original size:48 final size:47
Alignment explanation
Indices: 89795662--89795834 Score: 220
Period size: 48 Copynumber: 3.6 Consensus size: 47
89795652 TATGTGTGCT
* *
89795662 AGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTACGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-CCACATTATGAGAGCC
*
89795710 AGTGTAAGACCATGTATGGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCACATTATGAGAGCC
* ** * * ** *
89795758 AGTGTAAGAACATGTCTGGGACATGATATTGGCATTGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCCA-CATTATGAGAGCC
89795806 AGTGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
89795835 TAGCAACTTA
Statistics
Matches: 108, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
47 3 0.03
48 104 0.96
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGCCACATTATGAGAGCC
Found at i:89797114 original size:18 final size:18
Alignment explanation
Indices: 89797091--89797132 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
89797081 CCGATATGTT
89797091 CAGGCCATGTGAGCCACA
1 CAGGCCATGTGAGCCACA
89797109 CAGGCCATGTGAGCCACA
1 CAGGCCATGTGAGCCACA
89797127 CAGGCC
1 CAGGCC
89797133 TTCAACATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.26, C:0.36, G:0.29, T:0.10
Consensus pattern (18 bp):
CAGGCCATGTGAGCCACA
Found at i:89800099 original size:26 final size:25
Alignment explanation
Indices: 89800053--89800101 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
89800043 TCTCATCCCA
*
89800053 ATTTTACTCCAGTAAATTTTTGACG
1 ATTTTACTCCAGTAAAATTTTGACG
*
89800078 ATTTTACCTCTAGTAAAATTTTGA
1 ATTTTA-CTCCAGTAAAATTTTGA
89800102 GAAAATTCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (25 bp):
ATTTTACTCCAGTAAAATTTTGACG
Found at i:89808461 original size:96 final size:96
Alignment explanation
Indices: 89808304--89808482 Score: 261
Period size: 96 Copynumber: 1.9 Consensus size: 96
89808294 GCACATCAAT
** * * *
89808304 CAGAATAGATCTGAAAGGCTGCTGAACTGAATAGAGTTTACTTTTTCTTCTATTTATTTATTTTA
1 CAGAATAGATCCAAAAGGCTGCTCAACTGAATAGAGTTTACTCTTTCCTCTATTTATTTATTTTA
*
89808369 ATTATGTTTGCTTTGAGTGGAGTGCATCATA
66 ATTATATTTGCTTTGAGTGGAGTGCATCATA
* *
89808400 CAGAATAGATCCAAAAGGTTGTTCAACTGAATAGAGTTTACTCTTTCCTCT-TGTTATTTATTTT
1 CAGAATAGATCCAAAAGGCTGCTCAACTGAATAGAGTTTACTCTTTCCTCTAT-TTATTTATTTT
*
89808464 AGTTATATTTGCTTTGAGT
65 AATTATATTTGCTTTGAGT
89808483 TTATTTTTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
95 1 0.01
96 72 0.99
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (96 bp):
CAGAATAGATCCAAAAGGCTGCTCAACTGAATAGAGTTTACTCTTTCCTCTATTTATTTATTTTA
ATTATATTTGCTTTGAGTGGAGTGCATCATA
Found at i:89816015 original size:13 final size:13
Alignment explanation
Indices: 89815997--89816022 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
89815987 ATATTATAAT
89815997 TATTTTATGTTAA
1 TATTTTATGTTAA
89816010 TATTTTATGTTAA
1 TATTTTATGTTAA
89816023 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:89818372 original size:22 final size:22
Alignment explanation
Indices: 89818344--89818515 Score: 79
Period size: 22 Copynumber: 7.4 Consensus size: 22
89818334 ACATGTACAT
89818344 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
89818366 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
89818390 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * *
89818413 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
89818437 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
89818460 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
89818482 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
89818507 ATGTGATAA
1 ATGTGATAA
89818516 ATGTGAACAT
Statistics
Matches: 111, Mismatches: 16, Indels: 46
0.64 0.09 0.27
Matches are distributed among these distances:
22 34 0.31
23 26 0.23
24 26 0.23
25 25 0.23
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:89818580 original size:47 final size:47
Alignment explanation
Indices: 89818318--89818563 Score: 447
Period size: 47 Copynumber: 5.2 Consensus size: 47
89818308 TTTAGGATTT
* *
89818318 AATGTGATGAATGTGAACATGTACATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
89818365 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
89818412 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
89818459 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
89818506 AATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
89818553 AATGTGATGAA
1 AATGTGATGAA
89818564 CGTGGAAGTG
Statistics
Matches: 192, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 192 1.00
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:89820192 original size:40 final size:40
Alignment explanation
Indices: 89820147--89820313 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
89820137 CGGAATATAA
89820147 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
89820187 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
89820227 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
89820267 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
89820306 CCGGATAT
1 CCGGATAT
89820314 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:89832436 original size:17 final size:18
Alignment explanation
Indices: 89832394--89832442 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
89832384 AGTTGAAAAG
89832394 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
89832413 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
89832430 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
89832443 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:89833330 original size:40 final size:40
Alignment explanation
Indices: 89833264--89833430 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
89833254 AAATTGAATG
* * *
89833264 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
89833303 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
89833343 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
89833383 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
89833423 ATATCCGG
1 ATATCCGG
89833431 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:89837620 original size:24 final size:24
Alignment explanation
Indices: 89837588--89837698 Score: 213
Period size: 24 Copynumber: 4.6 Consensus size: 24
89837578 AATCTCAAAT
89837588 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
89837612 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
89837636 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
89837660 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
89837684 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
89837699 ACATAATAAG
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 85 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:89837711 original size:24 final size:24
Alignment explanation
Indices: 89837588--89837720 Score: 196
Period size: 24 Copynumber: 5.5 Consensus size: 24
89837578 AATCTCAAAT
*
89837588 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
*
89837612 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
89837636 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
89837660 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
89837684 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
89837708 GCACTATGTGTGC
1 GCACTATGTGTGC
89837721 AACGTTTGGT
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
24 97 0.95
25 5 0.05
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:89843461 original size:40 final size:40
Alignment explanation
Indices: 89843416--89843562 Score: 258
Period size: 40 Copynumber: 3.7 Consensus size: 40
89843406 TTCGAATGAT
*
89843416 ATCCGGGTTAATTCCCGAAGGCATTTGTACGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
89843456 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
* *
89843496 ATCCGGGTTAATTCCCGAAGGCAATTGTGTGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
*
89843536 ATCCGGGTTAAGTCCCGAAGGCATTTG
1 ATCCGGGTTAATTCCCGAAGGCATTTG
89843563 CATGAATTAC
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
Found at i:89843592 original size:80 final size:80
Alignment explanation
Indices: 89843424--89843600 Score: 214
Period size: 80 Copynumber: 2.2 Consensus size: 80
89843414 ATATCCGGGT
* * ** *
89843424 TAATTCCCGAAGGCATTTGTACGAGTTACCAAATCCGGGTTAATTCCCGAAGGCATTTGTGCGAG
1 TAATTCCCGAAGGCAATTGTACGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGCACGAA
* *
89843489 TTACCAAATCCGGGT
66 TTACCAAATCCAGGC
** *
89843504 TAATTCCCGAAGGCAATTGTGTGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGCATGAA
1 TAATTCCCGAAGGCAATTGTACGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGCACGAA
*
89843569 TTACTATAA-CCAGGC
66 TTACCA-AATCCAGGC
*
89843584 T-ATGTCCCGAAGACAAT
1 TAAT-TCCCGAAGGCAAT
89843601 CGAGCGAGTA
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
79 2 0.02
80 79 0.95
81 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (80 bp):
TAATTCCCGAAGGCAATTGTACGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGCACGAA
TTACCAAATCCAGGC
Found at i:89851220 original size:28 final size:27
Alignment explanation
Indices: 89851157--89851226 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
89851147 ATAGTGAGTC
89851157 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
89851184 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
89851212 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
89851227 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:89859249 original size:28 final size:27
Alignment explanation
Indices: 89859186--89859255 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
89859176 ATAGTGAGTC
89859186 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
89859213 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
89859241 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
89859256 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:89865797 original size:67 final size:67
Alignment explanation
Indices: 89865712--89865849 Score: 204
Period size: 67 Copynumber: 2.1 Consensus size: 67
89865702 GGGCTTAGTA
* *
89865712 AAACACAAAGCAACGATCACAAAAACATAGAAATTATCAAAAACGGATAAAAAATGAACCTTTAA
1 AAACACAAAGCAACGATCACAAAAACATAGAAATTATCAAAAACGAATAAAAAACGAACCTTTAA
89865777 TC
66 TC
* * * * * *
89865779 AAACATAAAGCAATGATCACAAAAATATAGAAATTATCGAAAATGAATCAAAAACGAACCTTTAA
1 AAACACAAAGCAACGATCACAAAAACATAGAAATTATCAAAAACGAATAAAAAACGAACCTTTAA
89865844 TC
66 TC
89865846 AAAC
1 AAAC
89865850 TTTAACATGG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.57, C:0.17, G:0.09, T:0.18
Consensus pattern (67 bp):
AAACACAAAGCAACGATCACAAAAACATAGAAATTATCAAAAACGAATAAAAAACGAACCTTTAA
TC
Found at i:89871596 original size:24 final size:24
Alignment explanation
Indices: 89871376--89871594 Score: 366
Period size: 24 Copynumber: 9.1 Consensus size: 24
89871366 GCAAAGACCA
*
89871376 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
89871400 TATGGCACTGTGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
89871424 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
89871448 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
89871472 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
89871496 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
89871520 TATGGCACTGTGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
89871544 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
89871568 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
89871592 TAT
1 TAT
89871595 AGTCACATTC
Statistics
Matches: 186, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 186 1.00
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:89874415 original size:29 final size:28
Alignment explanation
Indices: 89874369--89874528 Score: 103
Period size: 29 Copynumber: 5.5 Consensus size: 28
89874359 GCGATCATCA
* * *
89874369 AATATAAAAAGAGTTAGCTTCAGCTATC
1 AATATGAAAAGGGATAGCTTCAGCTATC
89874397 GAATATGAAAAGGGATAGCTTCAGCTATC
1 -AATATGAAAAGGGATAGCTTCAGCTATC
* * *
89874426 AATTATGAAAAGGGAT-G-GTGACGACCATC
1 AA-TATGAAAAGGGATAGCTTCA-G-CTATC
* * * * *
89874455 AACAATGGAAAGGGAT-G-GTGACGACCATC
1 AA-TATGAAAAGGGATAGCTTCA-G-CTATC
*
89874484 GAATATGAAAAGGGATAGCTTCAACTATC
1 -AATATGAAAAGGGATAGCTTCAGCTATC
89874513 AATTATGAAAAGGGAT
1 AA-TATGAAAAGGGAT
89874529 GGTGACGATC
Statistics
Matches: 109, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
27 2 0.02
28 6 0.06
29 96 0.88
30 3 0.03
31 2 0.02
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.23
Consensus pattern (28 bp):
AATATGAAAAGGGATAGCTTCAGCTATC
Found at i:89874512 original size:87 final size:87
Alignment explanation
Indices: 89874394--89874557 Score: 292
Period size: 87 Copynumber: 1.9 Consensus size: 87
89874384 AGCTTCAGCT
*
89874394 ATCGAATATGAAAAGGGATAGCTTCAGCTATCAATTATGAAAAGGGATGGTGACGACCATCAACA
1 ATCGAATATGAAAAGGGATAGCTTCAACTATCAATTATGAAAAGGGATGGTGACGACCATCAACA
*
89874459 ATGGAAAGGGATGGTGACGACC
66 ATGAAAAGGGATGGTGACGACC
* *
89874481 ATCGAATATGAAAAGGGATAGCTTCAACTATCAATTATGAAAAGGGATGGTGACGATCATCAACT
1 ATCGAATATGAAAAGGGATAGCTTCAACTATCAATTATGAAAAGGGATGGTGACGACCATCAACA
89874546 ATGAAAAGGGAT
66 ATGAAAAGGGAT
89874558 TGTTTTAACC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.21
Consensus pattern (87 bp):
ATCGAATATGAAAAGGGATAGCTTCAACTATCAATTATGAAAAGGGATGGTGACGACCATCAACA
ATGAAAAGGGATGGTGACGACC
Found at i:89874542 original size:29 final size:29
Alignment explanation
Indices: 89874423--89874598 Score: 160
Period size: 29 Copynumber: 6.1 Consensus size: 29
89874413 AGCTTCAGCT
*
89874423 ATCAATTATGAAAAGGGATGGTGACGACC
1 ATCAACTATGAAAAGGGATGGTGACGACC
* *
89874452 ATCAACAATGGAAAGGGATGGTGACGACC
1 ATCAACTATGAAAAGGGATGGTGACGACC
* * * *
89874481 ATCGAA-TATGAAAAGGGATAGCT-TCAACT
1 ATC-AACTATGAAAAGGGAT-GGTGACGACC
* *
89874510 ATCAATTATGAAAAGGGATGGTGACGATC
1 ATCAACTATGAAAAGGGATGGTGACGACC
* ****
89874539 ATCAACTATGAAAAGGGATTGTTTTAACC
1 ATCAACTATGAAAAGGGATGGTGACGACC
* * *
89874568 A-CAAATATGAAAAGGGACGGTTACGACC
1 ATCAACTATGAAAAGGGATGGTGACGACC
89874596 ATC
1 ATC
89874599 GTTAGCACAT
Statistics
Matches: 115, Mismatches: 27, Indels: 10
0.76 0.18 0.07
Matches are distributed among these distances:
28 26 0.23
29 85 0.74
30 4 0.03
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (29 bp):
ATCAACTATGAAAAGGGATGGTGACGACC
Found at i:89879015 original size:46 final size:46
Alignment explanation
Indices: 89878965--89879075 Score: 152
Period size: 46 Copynumber: 2.4 Consensus size: 46
89878955 GCCCATAACC
* *
89878965 GAACTCGGACTCAAATCAACAAGCTCGAGA-GTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACAAGCTCG-GACATTCGCATCCATAAGT
* * * *
89879011 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGT
89879057 GAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAA
89879076 TGAGTTCGAA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 2 0.04
46 55 0.96
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGT
Found at i:89884123 original size:46 final size:46
Alignment explanation
Indices: 89884056--89884316 Score: 380
Period size: 46 Copynumber: 5.7 Consensus size: 46
89884046 GGCAACCTGA
89884056 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
89884102 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCT-ATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
89884147 GTGTAAGACTATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
** *
89884193 GTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
89884239 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
89884285 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
89884317 TCATGTCAAA
Statistics
Matches: 196, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 44 0.22
46 152 0.78
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.23
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:89884211 original size:91 final size:92
Alignment explanation
Indices: 89884056--89884316 Score: 373
Period size: 91 Copynumber: 2.8 Consensus size: 92
89884046 GGCAACCTGA
*
89884056 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAA
89884121 AGATACCATGGCAACCT-ATATAAAAT
66 AGATACCATGGCAACCTGATATAAAAT
*
89884147 GTGTAAGACTATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAA
** *
89884212 AGATACCATGGCAATGTGATATGAAAT
66 AGATACCATGGCAACCTGATATAAAAT
*** * * * *
89884239 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAATGTGTAAGACCATGGTTGA
* *
89884303 AAGACACTATGGCA
65 AAGATACCATGGCA
89884317 TCATGTCAAA
Statistics
Matches: 153, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
91 79 0.52
92 74 0.48
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.23
Consensus pattern (92 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAA
AGATACCATGGCAACCTGATATAAAAT
Found at i:89884252 original size:137 final size:130
Alignment explanation
Indices: 89884007--89884316 Score: 406
Period size: 137 Copynumber: 2.3 Consensus size: 130
89883997 GTGTGCTCTC
*
89884007 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGTT
1 TGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGTT
*** *
89884072 GAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
66 GAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
*
89884137 T-ATATAAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG--A-GTGTAAGA
** *
89884201 CCATGGTTGAAAGATACCATGGCAATGTGATATGAAATGAACAAGACCATGGTTGAAAGATACCA
58 CCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCA
89884266 TGGCAACA
123 TGGCAACA
* * * * * *
89884274 TGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
89884317 TCATGTCAAA
Statistics
Matches: 155, Mismatches: 16, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
129 42 0.27
130 1 0.01
134 2 0.01
136 1 0.01
137 75 0.48
138 34 0.22
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (130 bp):
TGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGTT
GAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:89886233 original size:21 final size:21
Alignment explanation
Indices: 89886207--89886247 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
89886197 AAAATAGTGA
89886207 GTGTAAGACCATGGTTGAAAT
1 GTGTAAGACCATGGTTGAAAT
89886228 GTGTAAGACCATGGTTGAAA
1 GTGTAAGACCATGGTTGAAA
89886248 GATACCATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (21 bp):
GTGTAAGACCATGGTTGAAAT
Found at i:89886289 original size:46 final size:46
Alignment explanation
Indices: 89886232--89886356 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 46
89886222 TGAAATGTGT
** *
89886232 AAGACCATGGTTGAAAGATACCATGGCAATGTGATATG-AAATGAAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAAC
**
89886278 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAC
* * * *
89886324 AAGACCATAGTTGAAAGACACTATGGCATCATG
1 AAGACCATGGTTGAAAGATACCATGGCAACATG
89886357 TCAAAGATAA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 1 0.01
46 68 0.99
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (46 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAC
Found at i:89887117 original size:30 final size:30
Alignment explanation
Indices: 89887082--89887161 Score: 101
Period size: 30 Copynumber: 2.7 Consensus size: 30
89887072 CAAGATAACC
89887082 GAATAAAGAAATCCAAGATAGAAAAG-CCCA
1 GAATAAAGAAATCCAAGATA-AAAAGACCCA
*
89887112 GAATAAAGAAATCC-AGAATAAAAAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAAAGACCCA
* *
89887142 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
89887162 CGATACTATG
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
29 7 0.16
30 35 0.80
31 2 0.05
ACGTcount: A:0.57, C:0.15, G:0.16, T:0.11
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAAAGACCCA
Found at i:89887129 original size:15 final size:15
Alignment explanation
Indices: 89887082--89887152 Score: 67
Period size: 15 Copynumber: 4.7 Consensus size: 15
89887072 CAAGATAACC
89887082 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
**
89887097 -AGATAGAA-AAGCCCA
1 GA-ATA-AAGAAATCCA
89887112 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
89887127 GAATAAA-AAGATCCA
1 GAATAAAGAA-ATCCA
*
89887142 GGATAAAGAAA
1 GAATAAAGAAA
89887153 CCCAAGATAC
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
14 5 0.11
15 35 0.78
16 5 0.11
ACGTcount: A:0.59, C:0.13, G:0.17, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:89887161 original size:15 final size:15
Alignment explanation
Indices: 89887084--89887161 Score: 63
Period size: 15 Copynumber: 5.2 Consensus size: 15
89887074 AGATAACCGA
89887084 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
89887099 ATAGA-AAAGCCCAG
1 ATAAAGAAATCCAAG
89887113 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
*
89887128 AATAAA-AAGATCCAGG
1 -ATAAAGAA-ATCCAAG
*
89887144 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
89887159 ATA
1 ATA
89887162 CGATACTATG
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
14 9 0.18
15 33 0.66
16 8 0.16
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:89889245 original size:29 final size:29
Alignment explanation
Indices: 89889205--89889307 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
89889195 ATTGAGAGAT
*
89889205 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
89889234 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
89889263 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
89889292 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
89889308 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:89893441 original size:46 final size:46
Alignment explanation
Indices: 89893374--89893502 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
89893364 TGTAACCCGC
* *
89893374 CCATAAGCGAACTCGGACTCAACTCAATGAGCTC-GAGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCAT
* *
89893420 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
89893466 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
89893503 TGCCCAAATA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
46 76 0.97
47 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:89897235 original size:105 final size:103
Alignment explanation
Indices: 89897047--89897235 Score: 247
Period size: 105 Copynumber: 1.8 Consensus size: 103
89897037 CTTTGGTTTG
* **
89897047 GGTGCTGGGTATCCTGAGTGTGTCGGATACTCTTTAGCTCTTTGAGTAGCCCCGTGAGTAGCATT
1 GGTGCTGGATATCCTGAGTGTGTCGGATACTCTTTAGCTCTTTGAGTAGCCCCGTGAGTAGCAAG
* * * *
89897112 TATGAGCTCATTTGATATGTGATACATGCTAGGGTCCA
66 CATGAGATCATATCATATGTGATACATGCTAGGGTCCA
89897150 GGTGCTGGATATCCTGAGTTGTGTTCGGATACTCTTTAGCTCTTTGAGTAGCCCCTGTTGAG-AG
1 GGTGCTGGATATCCTGAG-TGTG-TCGGATACTCTTTAGCTCTTTGAGTAGCCCC-G-TGAGTAG
* *
89897214 -AAGCATGTGATCCTATCATATG
62 CAAGCATGAGATCATATCATATG
89897236 AGGCACTTCG
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
103 17 0.23
104 4 0.05
105 45 0.62
106 3 0.04
107 4 0.05
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.34
Consensus pattern (103 bp):
GGTGCTGGATATCCTGAGTGTGTCGGATACTCTTTAGCTCTTTGAGTAGCCCCGTGAGTAGCAAG
CATGAGATCATATCATATGTGATACATGCTAGGGTCCA
Found at i:89897493 original size:24 final size:24
Alignment explanation
Indices: 89897466--89897519 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
89897456 TGGAAGGTAT
*
89897466 GTATATATGTGTTTATGTGTATAA
1 GTATATATGTGTTCATGTGTATAA
* *
89897490 GTATGTATGTGTTCATGTGTATAT
1 GTATATATGTGTTCATGTGTATAA
89897514 GTATAT
1 GTATAT
89897520 GAATTTAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.02, G:0.22, T:0.50
Consensus pattern (24 bp):
GTATATATGTGTTCATGTGTATAA
Found at i:89900957 original size:27 final size:27
Alignment explanation
Indices: 89900927--89900994 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
89900917 ATTTTTCCCT
89900927 TATAGGGTAAAATGACCGAAATACCCC
1 TATAGGGTAAAATGACCGAAATACCCC
* * *
89900954 TATAGGGTAAAATGACTGTAATATCCC
1 TATAGGGTAAAATGACCGAAATACCCC
* *
89900981 TGTAAGGTAAAATG
1 TATAGGGTAAAATG
89900995 GCAGATTTGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.25
Consensus pattern (27 bp):
TATAGGGTAAAATGACCGAAATACCCC
Found at i:89905569 original size:27 final size:27
Alignment explanation
Indices: 89905539--89905606 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
89905529 GTTTTTCCCT
89905539 TATAGGGTAAAATGACCGAAATACCCC
1 TATAGGGTAAAATGACCGAAATACCCC
* * *
89905566 TATAGGGTAAAATGACTGTAATACCCT
1 TATAGGGTAAAATGACCGAAATACCCC
* *
89905593 TGTAAGGTAAAATG
1 TATAGGGTAAAATG
89905607 GCAGATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.25
Consensus pattern (27 bp):
TATAGGGTAAAATGACCGAAATACCCC
Found at i:89907317 original size:12 final size:12
Alignment explanation
Indices: 89907300--89907325 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
89907290 ATTCAGTTTT
89907300 TGAATCTCAAAC
1 TGAATCTCAAAC
89907312 TGAATCTCAAAC
1 TGAATCTCAAAC
89907324 TG
1 TG
89907326 TCATCAGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (12 bp):
TGAATCTCAAAC
Found at i:89912815 original size:12 final size:12
Alignment explanation
Indices: 89912798--89912823 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
89912788 ATTCAGTTTT
89912798 TGAATCTCAAAC
1 TGAATCTCAAAC
89912810 TGAATCTCAAAC
1 TGAATCTCAAAC
89912822 TG
1 TG
89912824 TCATCAGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (12 bp):
TGAATCTCAAAC
Found at i:89919170 original size:51 final size:51
Alignment explanation
Indices: 89919106--89919221 Score: 133
Period size: 51 Copynumber: 2.3 Consensus size: 51
89919096 ATGGAAACAT
** * * *
89919106 GATATGATATTATAATCTTAGAGATCTTAGATATGATATGGAATCTTATAA
1 GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA
* * * ** *
89919157 GATATTATTTTATAAGATTACATATCTTATCTAAGATATGTAATCTTAGAA
1 GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA
89919208 GATATGATATTATA
1 GATATGATATTATA
89919222 TTTGGTAGTA
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.41
Consensus pattern (51 bp):
GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA
Found at i:89920917 original size:18 final size:17
Alignment explanation
Indices: 89920885--89920919 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
89920875 TATCCGTGTG
89920885 GAGCCCACAAGCCCATT
1 GAGCCCACAAGCCCATT
*
89920902 GAGCCTACACAGCCCATT
1 GAGCCCACA-AGCCCATT
89920920 TCGGCCCATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.40, G:0.17, T:0.14
Consensus pattern (17 bp):
GAGCCCACAAGCCCATT
Found at i:89928212 original size:26 final size:26
Alignment explanation
Indices: 89928145--89928215 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
89928135 AACACACCAA
*
89928145 TATCGCAGCAAAGCTCCCAGTACTAG
1 TATCGCAGCAAAGCTGCCAGTACTAG
* * * * *
89928171 TAACACAACAAGGCTGCCAGTAGTAG
1 TATCGCAGCAAAGCTGCCAGTACTAG
*
89928197 TATCGTAGCAAAGCTGCCA
1 TATCGCAGCAAAGCTGCCA
89928216 ATATCAGTAT
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.34, C:0.27, G:0.21, T:0.18
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTACTAG
Found at i:89930857 original size:43 final size:43
Alignment explanation
Indices: 89930773--89930858 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
89930763 ATATCATACA
* **
89930773 ATGCCAACGTCCCAGACATGGTCTTACATGTAGTCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTACACACATATCG
*
89930816 ATGCC-ACTGTCCCAGACAGGGTCTTAC-TCGTACACATATATCG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACAT-GTACACACATATCG
89930859 GAGTCACATA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 3 0.08
43 34 0.92
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTACACACATATCG
Found at i:89933362 original size:40 final size:40
Alignment explanation
Indices: 89933272--89933490 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
89933262 ACCCAAGTAT
* ** * *
89933272 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
89933310 CTTTGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
89933350 CTTCGGGACTTAGCCTGGATATAATCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
89933390 CTTTGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
89933430 CTTC-GGATCTTAG-TCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
89933469 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
89933491 CATTCGAATA
Statistics
Matches: 147, Mismatches: 27, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
38 10 0.07
39 47 0.32
40 90 0.61
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:89939747 original size:40 final size:40
Alignment explanation
Indices: 89939702--89939868 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
89939692 CGGAATATAA
89939702 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
89939742 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
89939782 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
89939822 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
89939861 CCGGATAT
1 CCGGATAT
89939869 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:89948066 original size:39 final size:39
Alignment explanation
Indices: 89947973--89948124 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
89947963 GAATGTTCGA
*
89947973 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTG-GAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
89948011 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
89948050 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
89948089 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
89948125 GGTTACCATA
Statistics
Matches: 105, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 33 0.31
39 55 0.52
40 17 0.16
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:89948070 original size:77 final size:79
Alignment explanation
Indices: 89947974--89948124 Score: 261
Period size: 77 Copynumber: 1.9 Consensus size: 79
89947964 AATGTTCGAG
89947974 TGATATCCGGGCTAAGCCCGAAGGCAATTGTG-GAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
89948037 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
* *
89948051 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
*
89948116 ATTTGTGCG
66 AATTGTGCG
89948125 GGTTACCATA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 32 0.46
78 20 0.29
79 17 0.25
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:89948140 original size:40 final size:39
Alignment explanation
Indices: 89947974--89948153 Score: 236
Period size: 39 Copynumber: 4.6 Consensus size: 39
89947964 AATGTTCGAG
* *
89947974 TGATATCCGGGCTAAGCCCGAAGGCAATTGTG-GAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
89948012 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
89948051 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
89948090 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * * *
89948130 CCATAACCGGGCTATGTCCGAAGG
1 TGATATCCGGGCTAAGCCCGAAGG
89948154 TGTTTTGAAC
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
38 32 0.26
39 62 0.50
40 31 0.25
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:89948153 original size:79 final size:77
Alignment explanation
Indices: 89947980--89948153 Score: 240
Period size: 79 Copynumber: 2.2 Consensus size: 77
89947970 CGAGTGATAT
89947980 CCGGGCTAAGCCCGAAGGCAATTGTGGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC
1 CCGGGCTAAGCCCGAAGGCAATTGTGGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC
** *
89948045 GAGCTATGATAT
66 GAGCTACCATAA
* * *
89948057 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGTG-GAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGT
* *
89948122 GCGGGTTACCATAA
64 GCGAGCTACCATAA
* *
89948136 CCGGGCTATGTCCGAAGG
1 CCGGGCTAAGCCCGAAGG
89948154 TGTTTTGAAC
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
77 26 0.31
78 20 0.24
79 39 0.46
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (77 bp):
CCGGGCTAAGCCCGAAGGCAATTGTGGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC
GAGCTACCATAA
Found at i:89949773 original size:40 final size:40
Alignment explanation
Indices: 89949715--89949881 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
89949705 ATCTTGGGAT
*
89949715 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
89949754 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * *
89949794 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * *
89949834 ATAGCCC-GATATAGCAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
89949873 TTAGTCCGG
1 TTAGCCCGG
89949882 TTATCATCCG
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.02
39 32 0.29
40 74 0.67
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:89949863 original size:79 final size:79
Alignment explanation
Indices: 89949711--89949881 Score: 240
Period size: 79 Copynumber: 2.2 Consensus size: 79
89949701 AAGTATCTTG
* * *
89949711 GGAT-TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
1 GGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCAACTC
89949775 GCACAAATGCCTTC
66 GCACAAATGCCTTC
* *
89949789 GGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCC-GATATAGCAAC
1 GGATCTTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCAAC
*
89949852 TCGCACGAATGCCTTC
64 TCGCACAAATGCCTTC
89949868 GGATCTTAGTCCGG
1 GGATCTTAG-CCGG
89949882 TTATCATCCG
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
78 3 0.04
79 42 0.51
80 36 0.44
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (79 bp):
GGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCAACTC
GCACAAATGCCTTC
Found at i:89953141 original size:19 final size:19
Alignment explanation
Indices: 89953117--89953155 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
89953107 CATGAAAGAG
89953117 ACATTTTAAAGTTTGTAAC
1 ACATTTTAAAGTTTGTAAC
89953136 ACATTTTAAAGTTTGTAAC
1 ACATTTTAAAGTTTGTAAC
89953155 A
1 A
89953156 AGATGTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (19 bp):
ACATTTTAAAGTTTGTAAC
Found at i:89956294 original size:12 final size:12
Alignment explanation
Indices: 89956277--89956311 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
89956267 TTGGTTGTAA
89956277 GCTTATATATGT
1 GCTTATATATGT
*
89956289 GCTTATATATAT
1 GCTTATATATGT
*
89956301 ACTTATATATG
1 GCTTATATATG
89956312 CATGCATGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.49
Consensus pattern (12 bp):
GCTTATATATGT
Found at i:89966847 original size:27 final size:27
Alignment explanation
Indices: 89966798--89966849 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
89966788 AGTACTCCCG
****
89966798 ATTTACAGAATTACCGTTTTACCCTCA
1 ATTTACAGAATTACCAAAATACCCTCA
89966825 ATTTACAGAATTACCAAAATACCCT
1 ATTTACAGAATTACCAAAATACCCT
89966850 TGGTTTATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (27 bp):
ATTTACAGAATTACCAAAATACCCTCA
Found at i:89966856 original size:27 final size:27
Alignment explanation
Indices: 89966833--89966956 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
89966823 CAATTTACAG
89966833 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
89966860 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
89966887 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
89966914 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
89966941 AATTACTAAAATACCC
1 AATTACCAAAATACCC
89966957 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:89966875 original size:54 final size:53
Alignment explanation
Indices: 89966817--89966956 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
89966807 ATTACCGTTT
89966817 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
89966871 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
89966925 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
89966957 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:89966968 original size:81 final size:81
Alignment explanation
Indices: 89966833--89966985 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
89966823 CAATTTACAG
* **
89966833 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
89966898 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
89966914 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
89966977 AATACCCTT
64 AATACCCTT
89966986 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:89966969 original size:27 final size:27
Alignment explanation
Indices: 89966939--89967000 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
89966929 CATGGTTTGA
89966939 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
89966966 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
89966993 AAAATTAC
1 AAAATTAC
89967001 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:89966969 original size:54 final size:54
Alignment explanation
Indices: 89966833--89966983 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
89966823 CAATTTACAG
* ** * * *
89966833 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
89966887 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
89966941 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
89966984 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:89967011 original size:27 final size:27
Alignment explanation
Indices: 89966981--89967044 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
89966971 TACTGAAATA
*
89966981 CCCTTGTGGGGTAAAATTACCATTTTG
1 CCCTTGTGGGGTAAAATCACCATTTTG
* * *
89967008 CCCTTAG-GGTGTTAAATCACTATTTTG
1 CCCTT-GTGGGGTAAAATCACCATTTTG
89967035 CCCTTGTGGG
1 CCCTTGTGGG
89967045 CAAGTGACTG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
26 1 0.03
27 28 0.93
28 1 0.03
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (27 bp):
CCCTTGTGGGGTAAAATCACCATTTTG
Found at i:89967653 original size:28 final size:28
Alignment explanation
Indices: 89967621--89967679 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
89967611 GCGTAGATCA
89967621 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
89967649 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
89967677 CGA
1 CGA
89967680 TATACCTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:89968324 original size:10 final size:9
Alignment explanation
Indices: 89968304--89968328 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
89968294 ATTTGGGTTA
89968304 TTTTATTTT
1 TTTTATTTT
89968313 TTTTATTTT
1 TTTTATTTT
89968322 TTTTATT
1 TTTTATT
89968329 ATGCTTAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTATTTT
Found at i:89982961 original size:27 final size:27
Alignment explanation
Indices: 89982929--89982983 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
89982919 GCTACATATA
89982929 TCCCGTAGCTCTCTTGTCTACATGGTG
1 TCCCGTAGCTCTCTTGTCTACATGGTG
89982956 TCCCGTAGCTCTCTTGTCTACATGGTG
1 TCCCGTAGCTCTCTTGTCTACATGGTG
89982983 T
1 T
89982984 ACACATAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.11, C:0.29, G:0.22, T:0.38
Consensus pattern (27 bp):
TCCCGTAGCTCTCTTGTCTACATGGTG
Found at i:89983782 original size:30 final size:30
Alignment explanation
Indices: 89983762--89983838 Score: 145
Period size: 30 Copynumber: 2.6 Consensus size: 30
89983752 TTTGGAAAAA
*
89983762 TTACAATTTTGCCCCTAAACTTTTGCATAT
1 TTACACTTTTGCCCCTAAACTTTTGCATAT
89983792 TTACACTTTTGCCCCTAAACTTTTGCATAT
1 TTACACTTTTGCCCCTAAACTTTTGCATAT
89983822 TTACACTTTTGCCCCTA
1 TTACACTTTTGCCCCTA
89983839 GGCTCGGGAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.23, C:0.27, G:0.06, T:0.43
Consensus pattern (30 bp):
TTACACTTTTGCCCCTAAACTTTTGCATAT
Found at i:89983801 original size:16 final size:16
Alignment explanation
Indices: 89983780--89983833 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
89983770 TTGCCCCTAA
89983780 ACTTTTGCATATTTAC
1 ACTTTTGCATATTTAC
*** *
89983796 ACTTTTGC--CCCTAA
1 ACTTTTGCATATTTAC
89983810 ACTTTTGCATATTTAC
1 ACTTTTGCATATTTAC
89983826 ACTTTTGC
1 ACTTTTGC
89983834 CCCTAGGCTC
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 10 0.36
16 18 0.64
ACGTcount: A:0.22, C:0.24, G:0.07, T:0.46
Consensus pattern (16 bp):
ACTTTTGCATATTTAC
Found at i:89989546 original size:27 final size:27
Alignment explanation
Indices: 89989473--89989571 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 27
89989463 AATATCACAA
* ** *
89989473 CAAAGCTACCAGTAACAGTA-ACACAG
1 CAAAGCCACCAGTAACAGTATATGCGG
** *
89989499 CAAAGCTTCCA-TATCAGTATATGCGG
1 CAAAGCCACCAGTAACAGTATATGCGG
* *
89989525 CAAAGCCACCAGTAACAGTATATGTGA
1 CAAAGCCACCAGTAACAGTATATGCGG
*
89989552 CAAAGCCACCAATAACAGTA
1 CAAAGCCACCAGTAACAGTA
89989572 CACTTCCTCC
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
25 7 0.12
26 22 0.37
27 31 0.52
ACGTcount: A:0.41, C:0.25, G:0.16, T:0.17
Consensus pattern (27 bp):
CAAAGCCACCAGTAACAGTATATGCGG
Found at i:89990179 original size:16 final size:15
Alignment explanation
Indices: 89990139--89990182 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
89990129 AAGGCCATTC
89990139 TTTCAGCTTTTCTGCT
1 TTTCAGCTTTT-TGCT
* *
89990155 TGTCGGCTTTTTGACT
1 TTTCAGCTTTTTG-CT
89990171 TTTCAGCTTTTT
1 TTTCAGCTTTTT
89990183 CCATTCTACA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 2 0.09
16 21 0.91
ACGTcount: A:0.07, C:0.20, G:0.16, T:0.57
Consensus pattern (15 bp):
TTTCAGCTTTTTGCT
Found at i:89992609 original size:10 final size:10
Alignment explanation
Indices: 89992588--89992654 Score: 75
Period size: 10 Copynumber: 6.6 Consensus size: 10
89992578 CTTGAGATAT
89992588 TGATAT-ACA
1 TGATATGACA
89992597 TGATATGACA
1 TGATATGACA
89992607 TGATATGCACA
1 TGATATG-ACA
**
89992618 TGATATGTTA
1 TGATATGACA
89992628 TGATATGCACA
1 TGATATG-ACA
89992639 TGATATG-CTA
1 TGATATGAC-A
89992649 TGATAT
1 TGATAT
89992655 ACTCATTATA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
9 7 0.14
10 25 0.50
11 18 0.36
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (10 bp):
TGATATGACA
Found at i:89992620 original size:21 final size:20
Alignment explanation
Indices: 89992594--89992670 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 20
89992584 ATATTGATAT
89992594 ACATGATATGACATGATATGC
1 ACATGATATG-CATGATATGC
*
89992615 ACATGATATGTTATGATATGC
1 ACATGATATG-CATGATATGC
*
89992636 ACATGATATGCTATGATATAC
1 ACATGATATGC-ATGATATGC
* *
89992657 TCATTATATGCATG
1 ACATGATATGCATG
89992671 GGTTGGGTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
20 3 0.06
21 46 0.94
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:89992634 original size:5 final size:5
Alignment explanation
Indices: 89992583--89992654 Score: 56
Period size: 5 Copynumber: 14.0 Consensus size: 5
89992573 AGATGCTTGA
* * * *
89992583 GATATT GATAT -ACAT GATAT GACAT GATAT GCACAT GATAT GTTAT GATAT
1 GATA-T GATAT GATAT GATAT GATAT GATAT G-ATAT GATAT GATAT GATAT
* *
89992634 GCACAT GATAT GCTAT GATAT
1 G-ATAT GATAT GATAT GATAT
89992655 ACTCATTATA
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
4 3 0.06
5 36 0.71
6 12 0.24
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (5 bp):
GATAT
Found at i:89995473 original size:29 final size:28
Alignment explanation
Indices: 89995439--89995541 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
89995429 TACTCAATCA
*
89995439 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
89995468 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
89995497 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
89995526 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
89995542 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:89998689 original size:30 final size:30
Alignment explanation
Indices: 89998653--89998753 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
89998643 GACAAGATTG
* * *
89998653 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
89998683 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
89998711 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
89998740 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
89998754 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:89998765 original size:29 final size:28
Alignment explanation
Indices: 89998682--89998757 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
89998672 AAAATTGTAC
* *
89998682 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
89998710 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
89998739 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
89998758 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:90007194 original size:40 final size:39
Alignment explanation
Indices: 90007149--90007277 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
90007139 CGGAATATAA
90007149 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
90007189 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * *
90007229 CCGGAT-TAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
90007268 CCGGATATAA
1 CCGGATATAA
90007278 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
37 1 0.01
39 29 0.40
40 40 0.56
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:90007271 original size:39 final size:38
Alignment explanation
Indices: 90007165--90007273 Score: 123
Period size: 39 Copynumber: 2.8 Consensus size: 38
90007155 ATAACCATGT
*
90007165 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATTAGAA--TCTA
*
90007205 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGCCA-CTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATTAG-AATCTA
*
90007244 GCACAATTGCCTTCGGGTCTTAACCCGGAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGAT
90007274 ATAATTTCCA
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
38 2 0.03
39 28 0.45
40 28 0.45
41 3 0.05
42 1 0.02
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.25
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATTAGAATCTA
Found at i:90007298 original size:79 final size:79
Alignment explanation
Indices: 90007165--90007313 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 79
90007155 ATAACCATGT
*
90007165 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
90007229 CCGGATTAGCCACTA
65 CCGGATTAGCCACTA
* * * * *
90007244 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
90007307 CCCGGAT
64 CCCGGAT
90007314 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
78 3 0.05
79 57 0.93
80 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATTAGCCACTA
Found at i:90011055 original size:30 final size:30
Alignment explanation
Indices: 90011019--90011119 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
90011009 GACAAGATTG
* * *
90011019 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
90011049 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
90011077 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
90011106 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
90011120 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:90011131 original size:29 final size:28
Alignment explanation
Indices: 90011048--90011123 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
90011038 AAAATTGTAC
* *
90011048 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
90011076 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
90011105 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
90011124 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:90017588 original size:40 final size:40
Alignment explanation
Indices: 90017533--90017782 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
90017523 AACATTGGAA
90017533 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
90017573 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
90017613 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
90017653 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
90017693 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
90017732 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
90017773 CTATATCCGG
1 ATATATCCGG
90017783 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:90027146 original size:340 final size:340
Alignment explanation
Indices: 90026526--90027205 Score: 1306
Period size: 340 Copynumber: 2.0 Consensus size: 340
90026516 GAAGTGGGTT
90026526 AGTGGGAGGAAATCAGGGGATATGCATCATATCTTTGTTTTTGTCAAAATTGAATTTTATTTTTC
1 AGTGGGAGGAAATCAGGGGATATGCATCATATCTTTGTTTTTGTCAAAATTGAATTTTATTTTTC
*
90026591 CCAAATTTCCTCTACTTCTGACGTTATTTTTTTTTCAAAGAAACAAATCCATAGTTTCATTTTGT
66 CCAAATTTCCTCTACTTCTGACGTTATTTCTTTTTCAAAGAAACAAATCCATAGTTTCATTTTGT
90026656 TGATTTTGTTTTCCTTGCCAAACTAAATTCCTCCTCTATTTTTAATTCTTTTGTTAATCTCATTG
131 TGATTTTGTTTTCCTTGCCAAACTAAATTCCTCCTCTATTTTTAATTCTTTTGTTAATCTCATTG
*
90026721 TTGGGGCGTCGCGAATCCTTGCTTTTTCTTCATGTAGTCGGTAAGTGGGTTTTCGTTGGCTTTCT
196 TTGGGGCGTCGCGAATCCTTGCTTTTTCTTCATGTAGTCGGTAAGTGGGTTTTCGTTGGCCTTCT
*
90026786 TTGTATCGCTTTTCTGAAGATTTGAACGTTGTTGTATTTTTATGGTGTAGGGGAAATCAACGAGA
261 TCGTATCGCTTTTCTGAAGATTTGAACGTTGTTGTATTTTTATGGTGTAGGGGAAATCAACGAGA
90026851 GGTGACTTTCATTTC
326 GGTGACTTTCATTTC
90026866 AGTGGGAGGAAATCAGGGGATATGCATCATATCTTTGTTTTTGTCAAAATTGAATTTTATTTTTC
1 AGTGGGAGGAAATCAGGGGATATGCATCATATCTTTGTTTTTGTCAAAATTGAATTTTATTTTTC
*
90026931 CCAAATTTCCTCTGCTTCTGACGTTATTTCTTTTTCAAAGAAACAAATCCATAGTTTCATTTTGT
66 CCAAATTTCCTCTACTTCTGACGTTATTTCTTTTTCAAAGAAACAAATCCATAGTTTCATTTTGT
90026996 TGATTTTGTTTTCCTTGCCAAACTAAATTCCTCCTCTATTTTTAATTCTTTTGTTAATCTCATTG
131 TGATTTTGTTTTCCTTGCCAAACTAAATTCCTCCTCTATTTTTAATTCTTTTGTTAATCTCATTG
*
90027061 TTGGGGCGTCGCGAATCCTTTCTTTTTCTTCATGTAGTCGGTAAGTGGGTTTTCGTTGGCCTTCT
196 TTGGGGCGTCGCGAATCCTTGCTTTTTCTTCATGTAGTCGGTAAGTGGGTTTTCGTTGGCCTTCT
*
90027126 TCGTATCGCTTTTCTGAAGATTTGAACGTTGTTGTATTTTTATGGTGTAGGGGAAATCAACGAGC
261 TCGTATCGCTTTTCTGAAGATTTGAACGTTGTTGTATTTTTATGGTGTAGGGGAAATCAACGAGA
90027191 GGTGACTTTCATTTC
326 GGTGACTTTCATTTC
90027206 GTTTGGCGGT
Statistics
Matches: 334, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
340 334 1.00
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (340 bp):
AGTGGGAGGAAATCAGGGGATATGCATCATATCTTTGTTTTTGTCAAAATTGAATTTTATTTTTC
CCAAATTTCCTCTACTTCTGACGTTATTTCTTTTTCAAAGAAACAAATCCATAGTTTCATTTTGT
TGATTTTGTTTTCCTTGCCAAACTAAATTCCTCCTCTATTTTTAATTCTTTTGTTAATCTCATTG
TTGGGGCGTCGCGAATCCTTGCTTTTTCTTCATGTAGTCGGTAAGTGGGTTTTCGTTGGCCTTCT
TCGTATCGCTTTTCTGAAGATTTGAACGTTGTTGTATTTTTATGGTGTAGGGGAAATCAACGAGA
GGTGACTTTCATTTC
Found at i:90028155 original size:43 final size:43
Alignment explanation
Indices: 90028094--90028248 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 43
90028084 TGTGTTCTCA
* * *
90028094 TGTAAGACCACGTATGGGACGTTGGCATCGATCTGTGATTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACG
* * * *
90028137 TGTAAGACCATGTTTGGGACATTAGCATC-ATATTTGATT-CG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACG
* * * * *
90028178 TGTAAGACC-CTGTCTGGGATAGTGACATCGATATGAGA-TAGCA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATGTGATTA-CG
90028221 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
90028249 TGTGCAATAT
Statistics
Matches: 89, Mismatches: 18, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
41 25 0.28
42 14 0.16
43 49 0.55
44 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACG
Found at i:90032800 original size:39 final size:39
Alignment explanation
Indices: 90032746--90032889 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
90032736 GAATGTTCGA
90032746 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
90032785 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
90032824 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
90032863 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
90032890 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:90032836 original size:78 final size:79
Alignment explanation
Indices: 90032747--90032929 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
90032737 AATGTTCGAG
90032747 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
90032811 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
90032825 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
90032890 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
90032904 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
90032930 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:90040797 original size:39 final size:39
Alignment explanation
Indices: 90040743--90040886 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
90040733 GAATGTTCGA
90040743 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
90040782 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
90040821 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
90040860 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
90040887 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:90040833 original size:78 final size:79
Alignment explanation
Indices: 90040744--90040926 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
90040734 AATGTTCGAG
90040744 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
90040808 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
90040822 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
90040887 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
90040901 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
90040927 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:90050242 original size:27 final size:27
Alignment explanation
Indices: 90050212--90050264 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
90050202 TATTATATTA
90050212 GAGAATGAAAGGTAAGTATATGTATAG
1 GAGAATGAAAGGTAAGTATATGTATAG
90050239 GAGAATGAAAGGTAAGTATATGTATA
1 GAGAATGAAAGGTAAGTATATGTATA
90050265 AATGATGATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.45, C:0.00, G:0.28, T:0.26
Consensus pattern (27 bp):
GAGAATGAAAGGTAAGTATATGTATAG
Found at i:90051434 original size:18 final size:17
Alignment explanation
Indices: 90051413--90051468 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 17
90051403 TAACAGCCAG
90051413 TTATTCGATAACAATCAA
1 TTATTC-ATAACAATCAA
*
90051431 TTATTCAATAATAATCAA
1 TTATTC-ATAACAATCAA
*
90051449 TTATTCAGTATCAATCAA
1 TTATTCA-TAACAATCAA
90051467 TT
1 TT
90051469 GATCGGTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 1 0.03
18 32 0.97
ACGTcount: A:0.43, C:0.14, G:0.04, T:0.39
Consensus pattern (17 bp):
TTATTCATAACAATCAA
Found at i:90051779 original size:53 final size:53
Alignment explanation
Indices: 90051664--90051783 Score: 172
Period size: 53 Copynumber: 2.3 Consensus size: 53
90051654 CCAGAACAGT
* *
90051664 AACAGTAACAGTAGTAGTACGGTACATAGAGTACCTTATCAGAACAAATCCAG
1 AACAGTAACAGTAATAGTACGGTACATAGAGTACCTCATCAGAACAAATCCAG
* *
90051717 AAC-GATAACAGTAATAGTACGGTACATAGAGTACCTCATCGGAACAAAT-CTG
1 AACAG-TAACAGTAATAGTACGGTACATAGAGTACCTCATCAGAACAAATCCAG
90051769 AAACAGTAACAGTAA
1 -AACAGTAACAGTAA
90051784 CGGTAACAGT
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
52 3 0.05
53 56 0.93
54 1 0.02
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.20
Consensus pattern (53 bp):
AACAGTAACAGTAATAGTACGGTACATAGAGTACCTCATCAGAACAAATCCAG
Found at i:90053352 original size:20 final size:21
Alignment explanation
Indices: 90053329--90053372 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
90053319 TTACAAATGT
90053329 ATGTACATTA-TTTATCACAC
1 ATGTACATTATTTTATCACAC
**
90053349 ATGTATTTTATTTTTATCACAC
1 ATGTACATTA-TTTTATCACAC
90053371 AT
1 AT
90053373 TTGGCACTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
22 12 0.60
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.48
Consensus pattern (21 bp):
ATGTACATTATTTTATCACAC
Found at i:90061730 original size:39 final size:39
Alignment explanation
Indices: 90061567--90061731 Score: 192
Period size: 39 Copynumber: 4.3 Consensus size: 39
90061557 AACATTGAAA
*
90061567 ATATATCCGGGCTAAGA-CGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTCG
*
90061605 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTCG
* * *
90061645 ATATAT-CGGGCTAAGACCGAAGGCCTTTGTGCAAGTC-
1 ATATATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTCG
* * * * *
90061682 ACCAAATCCGGGTTATGACCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTCG
*
90061722 CTATATCCGG
1 ATATATCCGG
90061732 TTAAATCCCG
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
37 1 0.01
38 37 0.35
39 42 0.39
40 27 0.25
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.22
Consensus pattern (39 bp):
ATATATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTCG
Found at i:90063792 original size:31 final size:31
Alignment explanation
Indices: 90063735--90063825 Score: 145
Period size: 31 Copynumber: 3.1 Consensus size: 31
90063725 CCTTTTCATA
*
90063735 TTTCATATTTCATAATACT----CGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
90063762 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
90063793 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
90063824 TT
1 TT
90063826 ACTGTAAACG
Statistics
Matches: 59, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
27 18 0.31
31 41 0.69
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:90064068 original size:24 final size:24
Alignment explanation
Indices: 90064017--90064135 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
90064007 GCTTTATCAT
*
90064017 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
90064042 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
90064066 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
90064089 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
90064113 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
90064136 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:90064096 original size:47 final size:48
Alignment explanation
Indices: 90064017--90064135 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
90064007 GCTTTATCAT
*
90064017 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
90064066 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
90064113 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
90064136 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:90064210 original size:19 final size:19
Alignment explanation
Indices: 90064186--90064223 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
90064176 TATGATTACC
90064186 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
90064205 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
90064224 ACCATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (19 bp):
TCATGTGCATATCATACAT
Found at i:90064299 original size:25 final size:25
Alignment explanation
Indices: 90064267--90064314 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
90064257 ATACATAAAC
* * *
90064267 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
90064292 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
90064315 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:90071864 original size:38 final size:35
Alignment explanation
Indices: 90071805--90071922 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
90071795 TCAATCATGC
*
90071805 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
90071844 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
90071875 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
90071906 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
90071923 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:90071866 original size:31 final size:31
Alignment explanation
Indices: 90071828--90071922 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
90071818 CCTTTTCATA
*
90071828 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
90071859 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
90071890 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
90071921 TT
1 TT
90071923 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:90072164 original size:24 final size:24
Alignment explanation
Indices: 90072113--90072208 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
90072103 GCTTTATCAT
*
90072113 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
90072138 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
90072162 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
90072186 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
90072209 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
24 52 0.81
25 12 0.19
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:90072284 original size:20 final size:20
Alignment explanation
Indices: 90072259--90072297 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
90072249 TATGATTACC
90072259 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATT
90072279 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
90072298 ACCATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (20 bp):
TCATGTGCATATCATACATT
Found at i:90074291 original size:33 final size:31
Alignment explanation
Indices: 90074226--90074305 Score: 97
Period size: 33 Copynumber: 2.5 Consensus size: 31
90074216 AGAAGAGGTG
*
90074226 CTCCCTTCCCGTTTTACTATGCTTCATCGTT
1 CTCCCTTCCCGTTTCACTATGCTTCATCGTT
* *
90074257 CTCCCTTCCCGTTTCACTATGCGCTTCGTTGTT
1 CTCCCTTCCCGTTTCACTAT--GCTTCATCGTT
* *
90074290 CTCCTTTCTCGTTTCA
1 CTCCCTTCCCGTTTCA
90074306 ACAAAGTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 19 0.45
33 23 0.55
ACGTcount: A:0.07, C:0.36, G:0.11, T:0.45
Consensus pattern (31 bp):
CTCCCTTCCCGTTTCACTATGCTTCATCGTT
Found at i:90076553 original size:39 final size:39
Alignment explanation
Indices: 90076465--90076614 Score: 187
Period size: 39 Copynumber: 3.9 Consensus size: 39
90076455 ATTCCACTCC
* * * * *
90076465 CCCCATGCTACTTTATTTTATTATTAATCAAAAAC-AC-T
1 CCCCATACTATTTTGTTTTATTGTTAAT-TAAAACTACTT
* * *
90076503 CCCCATGCTATTTTGTTTTACTGTTAATTAAAACTATTT
1 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTT
90076542 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTT
1 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTT
* *
90076581 CCTCATACTATTTTGTTTTATTATTAATTAAAAC
1 CCCCATACTATTTTGTTTTATTGTTAATTAAAAC
90076615 CATACTTTAT
Statistics
Matches: 99, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
37 5 0.05
38 25 0.25
39 69 0.70
ACGTcount: A:0.30, C:0.19, G:0.05, T:0.47
Consensus pattern (39 bp):
CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTT
Found at i:90078167 original size:22 final size:22
Alignment explanation
Indices: 90078127--90078168 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
90078117 TGGCCACCCA
*
90078127 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
90078149 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
90078169 CCAACCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:90078287 original size:20 final size:19
Alignment explanation
Indices: 90078262--90078310 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 19
90078252 ATGATTGTTC
90078262 TTTGTTTTGGAGGAG-GTTTT
1 TTTGTTTTGGA--AGTGTTTT
90078282 TTTGTTTTTTGGAAGTGTTTT
1 TTTG--TTTTGGAAGTGTTTT
90078303 TTTGTTTT
1 TTTGTTTT
90078311 TTTGGAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
19 4 0.15
20 6 0.23
21 9 0.35
22 7 0.27
ACGTcount: A:0.08, C:0.00, G:0.27, T:0.65
Consensus pattern (19 bp):
TTTGTTTTGGAAGTGTTTT
Found at i:90078294 original size:22 final size:21
Alignment explanation
Indices: 90078266--90078341 Score: 73
Period size: 22 Copynumber: 3.3 Consensus size: 21
90078256 TTGTTCTTTG
90078266 TTTTGGAGGAGGTTTTTTTGTT
1 TTTTGGA-GAGGTTTTTTTGTT
90078288 TTTTGGA-AGTGTTTTTTTGTTT
1 TTTTGGAGAG-GTTTTTTTG-TT
90078310 TTTTGGAAAGAAGGTTGTTTTTGTT
1 TTTTGG--AG-AGGTT-TTTTTGTT
*
90078335 TCTTGGA
1 TTTTGGA
90078342 AAGGCTAGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 13
0.77 0.02 0.22
Matches are distributed among these distances:
20 2 0.04
21 9 0.20
22 15 0.33
23 1 0.02
24 1 0.02
25 10 0.22
26 8 0.17
ACGTcount: A:0.13, C:0.01, G:0.28, T:0.58
Consensus pattern (21 bp):
TTTTGGAGAGGTTTTTTTGTT
Done.