Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 299 of 770
Found at i:91197978 original size:15 final size:17
Alignment explanation
Indices: 91197953--91197991 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
91197943 GATTTTTTAT
*
91197953 TAAATTTTTTTATTTT-
1 TAAATATTTTTATTTTC
*
91197969 TCAATATTTTTATTTTC
1 TAAATATTTTTATTTTC
91197986 TAAATA
1 TAAATA
91197992 ATTTATTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (17 bp):
TAAATATTTTTATTTTC
Found at i:91202139 original size:21 final size:21
Alignment explanation
Indices: 91202094--91202140 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
91202084 TGTAACTAAT
* * *
91202094 TGGACTAACAGGACATTGGAT
1 TGGACTAACAAGACATTAGAC
*
91202115 TGGACTAACAAGATATTAGAC
1 TGGACTAACAAGACATTAGAC
91202136 TGGAC
1 TGGAC
91202141 CTAAGTAGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (21 bp):
TGGACTAACAAGACATTAGAC
Found at i:91206218 original size:16 final size:16
Alignment explanation
Indices: 91206197--91206228 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
91206187 AGGAACTTTA
91206197 TAAAATATGCATCGAT
1 TAAAATATGCATCGAT
91206213 TAAAATATGCATCGAT
1 TAAAATATGCATCGAT
91206229 ATGTCCTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.31
Consensus pattern (16 bp):
TAAAATATGCATCGAT
Found at i:91208138 original size:46 final size:46
Alignment explanation
Indices: 91207993--91208248 Score: 204
Period size: 46 Copynumber: 5.5 Consensus size: 46
91207983 TTTGTGCGCT
* * ** *
91207993 AGTGTAAGA-CATGTCTGAGACATGCATAGGCC-ACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTTGA-GATGA-AGCC
** * * * * *
91208039 AGTGTAAGACCATGTCTAAGACATAGCAACGACATTGAGAGGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTTGAGATGA-AGCC
91208087 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTTGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATG-AAGCC
* * *
91208133 AGTGTAAGA-CATGTCTGGGACATGCATCAG-CTATGAGATG-TGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-TGAGATGAAGCC
* *
91208177 AGTGTAAGACCATGTCTGGGACATAGCAT-TGACTTGATGGATG-AGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTTGA--GATGAAGCC
* *
91208224 AGTGTAAGACCACGTTTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
91208249 GTATCGGCAT
Statistics
Matches: 175, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
44 11 0.06
45 20 0.11
46 68 0.39
47 54 0.31
48 21 0.12
49 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATGAAGCC
Found at i:91219267 original size:29 final size:29
Alignment explanation
Indices: 91219232--91219305 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
91219222 GTTGTGAGAT
* *
91219232 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
91219261 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
91219290 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91219306 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:91234217 original size:40 final size:40
Alignment explanation
Indices: 91234172--91234338 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
91234162 CGGAATATAA
91234172 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
91234212 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
91234252 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
91234292 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
91234331 CCGGATAT
1 CCGGATAT
91234339 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:91234322 original size:80 final size:79
Alignment explanation
Indices: 91234172--91234338 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
91234162 CGGAATATAA
* *
91234172 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
91234237 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
91234252 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
91234314 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
91234331 CCGGATAT
1 CCGGATAT
91234339 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:91235187 original size:17 final size:19
Alignment explanation
Indices: 91235164--91235209 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
91235154 AAGAAGCATG
91235164 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
91235182 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
91235200 AATCATGCTC
1 AATCATGCTC
91235210 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:91236415 original size:40 final size:40
Alignment explanation
Indices: 91236371--91236602 Score: 320
Period size: 40 Copynumber: 5.8 Consensus size: 40
91236361 CCAGCATGAT
* * * * *
91236371 TGCTCTTCGGGACCTAGCCCGGATATATCACTACCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
91236411 TGCTCTTTGGGACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* **
91236451 TGGTCTTCAAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
91236491 TACTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
91236531 TGCTCTTCGGAATTTAGTCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
91236571 TGCTCTTCGGAACTTTGTCCAGATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
91236603 CTCAATTCTC
Statistics
Matches: 170, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:91237836 original size:37 final size:37
Alignment explanation
Indices: 91237781--91237914 Score: 241
Period size: 37 Copynumber: 3.6 Consensus size: 37
91237771 TTACTACGAA
*
91237781 GTCTTACTCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
91237818 GTCTTACCCGGACGTAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
91237855 GTCTTACCCAGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
91237892 GTCTTACCCGGACATAATCTCCA
1 GTCTTACCCGGACATAATCTCCA
91237915 AGTTTCATGT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 92 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:91238025 original size:48 final size:48
Alignment explanation
Indices: 91237949--91239003 Score: 1608
Period size: 48 Copynumber: 22.0 Consensus size: 48
91237939 GTTACAACAC
* * *
91237949 TCACATTAGCCATTCGGCTTTACCACATATTCTTATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
91237997 TCACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
91238045 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
*
91238093 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * * *
91238141 TCACATTCGCCATTCGGTTTTACAACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
91238189 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
91238237 TCACATTAGCCATTTGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
*
91238285 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
91238333 TCACATTCGCCATTCGGCTTTACCACATATACATATCTTATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* ** *
91238381 TCACATTAGCCATTCGGCTTTACCACATACACATATCAGACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
91238429 TCACATTAGCCATTCGGCTTTACCACATGTACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
*
91238477 TCACATTAGCCATTCGGCTTTACCACATATACATATCTTATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
91238525 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
*
91238573 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
91238621 TCACATTCA-CCATTCGGCTTTACCACATCTACATATCACACATATATT
1 TCACATT-AGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
91238669 TCACATTAGCCTTTCGGCTTTACCACATATACATATCTTATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
91238717 TCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
91238765 TCTCATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * * * * *
91238813 TCACATTCGCCATTCGGCTTTACCACATCTATATATCACACATGTATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
91238861 TCACATTAGCCTTTCGGCTTTACCACATATACATATCTTATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
91238909 TCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
91238957 TCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
91239004 ATATTTATCT
Statistics
Matches: 914, Mismatches: 91, Indels: 4
0.91 0.09 0.00
Matches are distributed among these distances:
47 1 0.00
48 912 1.00
49 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
Found at i:91247781 original size:25 final size:25
Alignment explanation
Indices: 91247645--91247773 Score: 195
Period size: 25 Copynumber: 5.2 Consensus size: 25
91247635 TAAGCTTGTT
*
91247645 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
*
91247670 AATTTGCTCTTAATAATTCCGATTA
1 AATTTGCTCTTAATAATTCCGGTTA
* *
91247695 AATTTGTTCTTAATAATTCAGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* *
91247720 AATTTGCTCTTAATATTTCTGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
*
91247745 AATTTGCTCTTAATATTTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
91247770 AATT
1 AATT
91247774 CGCCCTTATT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 95 1.00
ACGTcount: A:0.29, C:0.12, G:0.11, T:0.48
Consensus pattern (25 bp):
AATTTGCTCTTAATAATTCCGGTTA
Found at i:91247786 original size:25 final size:25
Alignment explanation
Indices: 91247645--91247788 Score: 189
Period size: 25 Copynumber: 5.8 Consensus size: 25
91247635 TAAGCTTGTT
* *
91247645 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
* *
91247670 AATTTGCTCTTAATAATTCCGATTA
1 AATTTGCTCTTAATATTTCCGGTTA
* * *
91247695 AATTTGTTCTTAATAATTCAGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
*
91247720 AATTTGCTCTTAATATTTCTGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
91247745 AATTTGCTCTTAATATTTCCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
* * *
91247770 AATTCGCCCTTATTATTTC
1 AATTTGCTCTTAATATTTC
91247789 TGAATAAGTT
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 107 1.00
ACGTcount: A:0.27, C:0.15, G:0.10, T:0.48
Consensus pattern (25 bp):
AATTTGCTCTTAATATTTCCGGTTA
Found at i:91247787 original size:50 final size:50
Alignment explanation
Indices: 91247645--91247791 Score: 213
Period size: 50 Copynumber: 2.9 Consensus size: 50
91247635 TAAGCTTGTT
* *
91247645 AATTTGTTCTTAATAATTCCGGTTAAATTTGCTCTTAATAATTCCGATTA
1 AATTTGTTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCTGATTA
* *
91247695 AATTTGTTCTTAATAATTCAGGTTAAATTTGCTCTTAATATTTCTGGTTA
1 AATTTGTTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCTGATTA
* * * * *
91247745 AATTTGCTCTTAATATTTCCGGTTAAATTCGCCCTTATTATTTCTGA
1 AATTTGTTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCTGA
91247792 ATAAGTTACT
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 86 1.00
ACGTcount: A:0.27, C:0.14, G:0.11, T:0.48
Consensus pattern (50 bp):
AATTTGTTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCTGATTA
Found at i:91253518 original size:48 final size:48
Alignment explanation
Indices: 91253454--91253592 Score: 172
Period size: 48 Copynumber: 2.9 Consensus size: 48
91253444 TACCACGGTT
* *
91253454 ATACGTGTAACATGGTGCTAAATGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAATGGATATACCACGATTACACATATTG
* * * * *
91253502 ATACATGTAACGTGGTGTTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAATGGATATACCACGATTACACATATTG
* * * *
91253550 ATTCAT-TAACGTGGTGCTAACTGGATATACCACAATTAAACAT
1 ATACATGTAACGTGGTGCTAAATGGATATACCACGATTACACAT
91253593 GTAACGTGGT
Statistics
Matches: 76, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
47 30 0.39
48 46 0.61
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAATGGATATACCACGATTACACATATTG
Found at i:91256195 original size:21 final size:22
Alignment explanation
Indices: 91256169--91256209 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
91256159 TACTAAATAC
91256169 AGGGGC-ACACGCCCATGTGGG
1 AGGGGCAACACGCCCATGTGGG
*
91256190 AGGGGCAACATGCCCATGTG
1 AGGGGCAACACGCCCATGTG
91256210 ACCATTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.22, C:0.27, G:0.39, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGTGGG
Found at i:91257458 original size:45 final size:46
Alignment explanation
Indices: 91257366--91257581 Score: 165
Period size: 45 Copynumber: 4.7 Consensus size: 46
91257356 GTAGAATACT
* * *
91257366 GATGCCATGTCCCAAACATGGTCTTACATTGGC--TCATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCATCTC-TAGGCC
91257412 GATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCT-TAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTAT-CATCTCTAGGCC
* * * * * *
91257457 GATCCATGTTCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCTAGGCC
* * * * * * * *
91257503 GATGCCATGTCTCAGACATGGTCTTACACTGGTTCTGATAATGT-GGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCAT-CTCTAGGCC
*
91257551 GATGCATGTTCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
91257582 CCACAATAAC
Statistics
Matches: 138, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
44 13 0.09
45 51 0.37
46 28 0.20
47 24 0.17
48 21 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCTAGGCC
Found at i:91260328 original size:38 final size:38
Alignment explanation
Indices: 91260277--91260369 Score: 168
Period size: 38 Copynumber: 2.4 Consensus size: 38
91260267 CTTAGCATAG
*
91260277 ATGTGTATGTTCGGCCACATGAATGAGTACTTGAGTTA
1 ATGTGTATGTTCGGCCACATGAATGAGTACATGAGTTA
*
91260315 ATGTGTGTGTTCGGCCACATGAATGAGTACATGAGTTA
1 ATGTGTATGTTCGGCCACATGAATGAGTACATGAGTTA
91260353 ATGTGTATGTTCGGCCA
1 ATGTGTATGTTCGGCCA
91260370 TAGGTAAGCA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (38 bp):
ATGTGTATGTTCGGCCACATGAATGAGTACATGAGTTA
Found at i:91261113 original size:40 final size:40
Alignment explanation
Indices: 91261002--91261085 Score: 141
Period size: 40 Copynumber: 2.1 Consensus size: 40
91260992 GTGCTAAGTG
* * *
91261002 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGGGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATTTGCGCGAGTT
91261042 ACTAAATCCGGACTAAGATCCGAAGGCATTTGCGCGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATTTGCGCGAGTT
91261082 ACTA
1 ACTA
91261086 TAACCAGGCT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (40 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATTTGCGCGAGTT
Found at i:91268448 original size:38 final size:38
Alignment explanation
Indices: 91268397--91268489 Score: 168
Period size: 38 Copynumber: 2.4 Consensus size: 38
91268387 CTTAGCATAG
*
91268397 ATGTGTATGTTCGGCCACATGAATGAGTACTTGAGTTA
1 ATGTGTATGTTCGGCCACATGAATGAGTACATGAGTTA
*
91268435 ATGTGTGTGTTCGGCCACATGAATGAGTACATGAGTTA
1 ATGTGTATGTTCGGCCACATGAATGAGTACATGAGTTA
91268473 ATGTGTATGTTCGGCCA
1 ATGTGTATGTTCGGCCA
91268490 TAGGTAAGCA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (38 bp):
ATGTGTATGTTCGGCCACATGAATGAGTACATGAGTTA
Found at i:91269148 original size:40 final size:40
Alignment explanation
Indices: 91269104--91269193 Score: 128
Period size: 40 Copynumber: 2.2 Consensus size: 40
91269094 CTAAGTCCTA
*
91269104 AAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCG
1 AAGGCATTTGTGC-AAGTGACTAAATCCGGACTAAGATCCG
* * *
91269144 AAGGCATTTGTGCGAGTTACTAAATTCGGACTAAGATCCG
1 AAGGCATTTGTGCAAGTGACTAAATCCGGACTAAGATCCG
91269184 AAGGCATTTG
1 AAGGCATTTG
91269194 CGCGAGTTAC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
40 38 0.84
41 7 0.16
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (40 bp):
AAGGCATTTGTGCAAGTGACTAAATCCGGACTAAGATCCG
Found at i:91269199 original size:40 final size:40
Alignment explanation
Indices: 91269130--91269205 Score: 143
Period size: 40 Copynumber: 1.9 Consensus size: 40
91269120 TGACTATATC
*
91269130 CGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATT
1 CGGACTAAGATCCGAAGGCATTTGCGCGAGTTACTAAATT
91269170 CGGACTAAGATCCGAAGGCATTTGCGCGAGTTACTA
1 CGGACTAAGATCCGAAGGCATTTGCGCGAGTTACTA
91269206 TAACCTGGCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (40 bp):
CGGACTAAGATCCGAAGGCATTTGCGCGAGTTACTAAATT
Found at i:91273264 original size:40 final size:40
Alignment explanation
Indices: 91273186--91273369 Score: 187
Period size: 40 Copynumber: 4.5 Consensus size: 40
91273176 ACCCAAGTAT
*
91273186 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGATTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
91273225 CTTTGGG-TCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGAT-TTAGCCCGGATATAGTCACTAGCACAAATGC
*
91273265 CTTCGGGATTTAGCCCAGATATAGTCACTAGCACAAATGC
1 CTTCGGGATTTAGCCCGGATATAGTCACTAGCACAAATGC
** * * *
91273305 CTTCGAAACTTAGCCCGGGTATAG-CAACTACTCTCACAAATGC
1 CTTCGGGATTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
*
91273348 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGATTTAGCCCGGATAT
91273370 CATCCGAATA
Statistics
Matches: 120, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 11 0.09
40 78 0.65
41 2 0.02
43 28 0.23
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGATTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:91275154 original size:29 final size:29
Alignment explanation
Indices: 91275060--91275219 Score: 198
Period size: 29 Copynumber: 5.5 Consensus size: 29
91275050 GACAAGATTG
* * * * *
91275060 GCACTAAGTGTGCGGGTTTAAAAGTGTACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* * *
91275090 GCACTAAGTGTGCGAGTTTG--ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATATATA
91275118 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
91275147 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
*
91275177 GCACTAAGTGTGCAAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
91275206 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
91275220 GATTCACTAT
Statistics
Matches: 117, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.02
28 21 0.18
29 49 0.42
30 43 0.37
31 2 0.02
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:91275186 original size:59 final size:57
Alignment explanation
Indices: 91275060--91275219 Score: 205
Period size: 59 Copynumber: 2.8 Consensus size: 57
91275050 GACAAGATTG
* * * * * *
91275060 GCACTAAGTGTGCGGGTTTAAAAGTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
91275118 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
*
91275177 GCACTAAGTGTGCAAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
91275220 GATTCACTAT
Statistics
Matches: 91, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 49 0.54
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:91284609 original size:40 final size:40
Alignment explanation
Indices: 91284531--91284714 Score: 185
Period size: 40 Copynumber: 4.5 Consensus size: 40
91284521 ACCCAAGTAT
* * *
91284531 CTTCGGGATTTAG-CCGGATATAG-CAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCAGATATAGTC-ACTAGCACAAATGC
* **
91284570 CTTCGGGTCTTAGCCCAGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATGC
*
91284610 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATGC
* * * * *
91284650 CTTCGGGACTTAGCCCGGGTAGAG-CAACTACTCTCAAAAATGC
1 CTTCGGGACTTAGCCCAGATATAGTC-ACTA---GCACAAATGC
*
91284693 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCAGATAT
91284715 CATCCGAATA
Statistics
Matches: 123, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 12 0.10
40 82 0.67
41 1 0.01
43 28 0.23
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATGC
Found at i:91284663 original size:80 final size:81
Alignment explanation
Indices: 91284531--91284714 Score: 223
Period size: 80 Copynumber: 2.3 Consensus size: 81
91284521 ACCCAAGTAT
* * * *
91284531 CTTCGGGATTTAG-CCGGATATAGCAACTTGCACAAATGCCTTCGGGTCTTAGCCCAGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATAGAG-
**
91284595 C-ACTA-GCATGAATGC
65 CAACTACGCAAAAATGC
* *
91284610 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTAGAG
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATAGAG
*
91284674 CAACTACTCTCAAAAATGC
65 CAACTA--CGCAAAAATGC
91284693 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
91284715 CATCCGAATA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
79 13 0.14
80 47 0.52
81 1 0.01
83 29 0.32
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATAGAGC
AACTACGCAAAAATGC
Found at i:91292846 original size:20 final size:20
Alignment explanation
Indices: 91292821--91292859 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
91292811 GTTTATTCGT
*
91292821 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
91292841 GATTTTTAAAATTTTGTAA
1 GATTTTCAAAATTTTGTAA
91292860 TTGGATGTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:91294521 original size:28 final size:28
Alignment explanation
Indices: 91294489--91294557 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
91294479 GCGTAGATCA
*
91294489 CGAAATTACCCCTAAAGAGCAAAATTAT
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
91294517 CGAAATTACCCCTAAAGAGCATAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
91294545 CGATA-TACCCCTA
1 CGAAATTACCCCTA
91294558 GGGTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 8 0.21
28 30 0.79
ACGTcount: A:0.42, C:0.26, G:0.10, T:0.22
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:91300836 original size:20 final size:20
Alignment explanation
Indices: 91300811--91300848 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
91300801 GTTTATTCGC
*
91300811 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
91300831 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
91300849 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:91302491 original size:28 final size:27
Alignment explanation
Indices: 91302459--91302526 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 27
91302449 GCGTAGATCA
91302459 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGC-AAATTAC
91302487 CGAAATTACCCCTAAAGAGCAAATTAC
1 CGAAATTACCCCTAAAGAGCAAATTAC
*
91302514 CGATA-TACCCCTA
1 CGAAATTACCCCTA
91302527 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 8 0.21
27 11 0.28
28 20 0.51
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (27 bp):
CGAAATTACCCCTAAAGAGCAAATTAC
Found at i:91307897 original size:46 final size:46
Alignment explanation
Indices: 91307803--91308016 Score: 188
Period size: 46 Copynumber: 4.6 Consensus size: 46
91307793 GTAGAATGCT
* * *
91307803 GATGCCATGTCCCAAACATGGTCTTACACTGG--CTCATCTTGTA-TCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGGCC
91307849 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCC
* * * * *
91307895 GATGCATGTCCCA-AGCATGTCGTACACTAGCTCTCGTCTCAATGCC
1 GATGCATGTCCCAGA-CATGTCTTACACTGGCTCTCATCTCGAGGCC
* * * * * *
91307941 GATACCATGTCCCAGACATGGTCTTACAGTGGCTCTGATAAT-GTGGCT
1 GAT-GCATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCC
91307989 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
91308017 AGCCTAAAAT
Statistics
Matches: 137, Mismatches: 21, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
44 12 0.09
45 16 0.12
46 61 0.45
47 27 0.20
48 20 0.15
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCC
Found at i:91311104 original size:49 final size:49
Alignment explanation
Indices: 91311032--91311157 Score: 234
Period size: 49 Copynumber: 2.6 Consensus size: 49
91311022 TGATAAGGCC
91311032 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
*
91311081 TGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
*
91311130 CGTGATGAATGTGAAAGTGTATATATAT
1 TGTGATGAATGTGAAAGTGTATATATAT
91311158 ATGTGGTAAA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 74 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32
Consensus pattern (49 bp):
TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
Found at i:91323010 original size:27 final size:28
Alignment explanation
Indices: 91322954--91323023 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
91322944 AAACTTGTAC
91322954 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
91322982 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
91323009 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
91323024 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:91323034 original size:27 final size:27
Alignment explanation
Indices: 91322954--91323035 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
91322944 AAACTTGTAC
* *
91322954 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
91322982 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
91323009 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
91323036 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:91324795 original size:28 final size:28
Alignment explanation
Indices: 91324762--91324836 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
91324752 ATTGCATGAC
*
91324762 TATGAATGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATAGGCCA
91324790 TATGAATGTGATTGGGGCC-GATAGGCCA
1 TATGAATGTGATT-GGGCCTGATAGGCCA
* *
91324818 TATGAATGAGATTGAGCCT
1 TATGAATGTGATTGGGCCT
91324837 AAAGGGGCCA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 4 0.10
28 33 0.79
29 5 0.12
ACGTcount: A:0.25, C:0.13, G:0.33, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATAGGCCA
Found at i:91325881 original size:17 final size:18
Alignment explanation
Indices: 91325848--91325883 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
91325838 TTCTCTTTTG
91325848 AAGGGTTTCAATGAAAAC
1 AAGGGTTTCAATGAAAAC
*
91325866 AAGGTTTTCAAT-AAAAC
1 AAGGGTTTCAATGAAAAC
91325883 A
1 A
91325884 CTTTAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.47, C:0.11, G:0.17, T:0.25
Consensus pattern (18 bp):
AAGGGTTTCAATGAAAAC
Found at i:91335039 original size:40 final size:39
Alignment explanation
Indices: 91334995--91335124 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
91334985 TCGAATATAA
91334995 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
91335035 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
91335075 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
91335115 CCGGATATAA
1 CCGGATATAA
91335125 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:91335139 original size:40 final size:40
Alignment explanation
Indices: 91335011--91335162 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
91335001 ATAACCATGT
* * *
91335011 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
91335051 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
91335091 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
91335131 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
91335163 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:91335145 original size:80 final size:80
Alignment explanation
Indices: 91335011--91335160 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
91335001 ATAACCATGT
*
91335011 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
91335075 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
91335091 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
91335154 CCCGGAT
64 CCCGGAT
91335161 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:91351924 original size:79 final size:80
Alignment explanation
Indices: 91351781--91351988 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
91351771 ACCTTCGGAG
* * ** * * * *
91351781 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
91351845 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
91351860 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
91351922 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
91351939 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
91351989 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:91351933 original size:40 final size:40
Alignment explanation
Indices: 91351881--91351988 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
91351871 TATCACGATT
** *
91351881 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
91351921 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
91351961 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
91351989 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:91355818 original size:22 final size:19
Alignment explanation
Indices: 91355783--91355831 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
91355773 AAAAAGATGA
91355783 TAATTATTGAT-ATATA-AT
1 TAATTATT-ATAATATATAT
91355801 TATATTCATTATAATATATAT
1 TA-ATT-ATTATAATATATAT
91355822 TAATTATTAT
1 TAATTATTAT
91355832 CAACTTTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
18 2 0.07
19 10 0.37
20 11 0.41
21 4 0.15
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (19 bp):
TAATTATTATAATATATAT
Found at i:91355820 original size:16 final size:15
Alignment explanation
Indices: 91355795--91355828 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
91355785 ATTATTGATA
*
91355795 TATAATTATATTCAT
1 TATAATTATATTAAT
91355810 TATAATATATATTAAT
1 TATAAT-TATATTAAT
91355826 TAT
1 TAT
91355829 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:91356575 original size:25 final size:25
Alignment explanation
Indices: 91356522--91356575 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
91356512 AATTTTATTC
* *
91356522 AATTATCTAATTTTTCAATTTATTG
1 AATTATCTAATTTTTCAATTAATTA
91356547 AATTAT-TAATATTTT-ATATTAATTA
1 AATTATCTAAT-TTTTCA-ATTAATTA
91356572 AATT
1 AATT
91356576 TTTGAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.56
Consensus pattern (25 bp):
AATTATCTAATTTTTCAATTAATTA
Found at i:91363048 original size:10 final size:11
Alignment explanation
Indices: 91362978--91363052 Score: 66
Period size: 10 Copynumber: 7.1 Consensus size: 11
91362968 ACCCAACCCA
*
91362978 TGCATATAATG
1 TGCATATCATG
* *
91362989 AGTATATCAT-
1 TGCATATCATG
*
91362999 AGCATATCATG
1 TGCATATCATG
91363010 TGCATATCAT-
1 TGCATATCATG
**
91363020 AACATATCATG
1 TGCATATCATG
91363031 TGCATATCATG
1 TGCATATCATG
*
91363042 T-CCTATCATG
1 TGCATATCATG
91363052 T
1 T
91363053 ATAACAATAT
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
10 26 0.50
11 26 0.50
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.36
Consensus pattern (11 bp):
TGCATATCATG
Found at i:91363052 original size:21 final size:21
Alignment explanation
Indices: 91362992--91363040 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
91362982 TATAATGAGT
*
91362992 ATATCATAGCATATCATGTGC
1 ATATCATAACATATCATGTGC
91363013 ATATCATAACATATCATGTGC
1 ATATCATAACATATCATGTGC
91363034 ATATCAT
1 ATATCAT
91363041 GTCCTATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (21 bp):
ATATCATAACATATCATGTGC
Found at i:91363342 original size:27 final size:27
Alignment explanation
Indices: 91363178--91363371 Score: 194
Period size: 27 Copynumber: 7.2 Consensus size: 27
91363168 GGTTATCTCA
* *
91363178 GTAATTCTA-CCTACAGGAGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTG
* * *
91363204 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTG
* * *
91363231 ATAATTCTACCCTACAGGGATATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTG
*
91363258 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTG
* * * * **
91363285 GTAACTCTACTCTTCAGAGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTG
*
91363312 GTAATTCTACCTTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTG
* **
91363339 GTAATTTTA-CAAACTAGGGGTATTTTG
1 GTAATTCTACCCTAC-AGGGGTATTTTG
91363366 GTAATT
1 GTAATT
91363372 TTGTAAACCA
Statistics
Matches: 140, Mismatches: 26, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
26 11 0.08
27 129 0.92
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTG
Found at i:91363361 original size:54 final size:53
Alignment explanation
Indices: 91363246--91363479 Score: 165
Period size: 54 Copynumber: 4.3 Consensus size: 53
91363236 TCTACCCTAC
* * * * * *
91363246 AGGGATATTTTAGTAATTCTACCCTACAGGGGTATTTTAGTAACTCTAC-TCTT
1 AGGGGTATTTTAGTAATTCTACCTTACAGGGGTATTTTGGTAATTTTACAAC-T
* *
91363299 CAGAGGTATTTCAGTAATTCTACCTTACAGGGGTATTTTGGTAATTTTACAAACT
1 -AGGGGTATTTTAGTAATTCTACCTTACAGGGGTATTTTGGTAATTTTAC-AACT
* ** * * * *
91363354 AGGGGTATTTTGGTAATT-T-TGTAAACCAAGGTTATTTTGGTAATTTTACAAGT
1 AGGGGTATTTTAGTAATTCTACCT-TA-CAGGGGTATTTTGGTAATTTTACAACT
* * *
91363407 CGAGGGTATTTTAGTAATT-TCACAAATT--AGGGGTATTTTGGTAATTTCACAAACT
1 AG-GGGTATTTTAGTAATTCT-AC--CTTACAGGGGTATTTTGGTAATTTTAC-AACT
*
91363462 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTAGTAATT
91363480 TTACTAATCG
Statistics
Matches: 142, Mismatches: 28, Indels: 20
0.75 0.15 0.11
Matches are distributed among these distances:
52 1 0.01
53 6 0.04
54 128 0.90
55 5 0.04
56 1 0.01
58 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGGTATTTTAGTAATTCTACCTTACAGGGGTATTTTGGTAATTTTACAACT
Found at i:91363372 original size:27 final size:27
Alignment explanation
Indices: 91363327--91363483 Score: 199
Period size: 27 Copynumber: 5.8 Consensus size: 27
91363317 TCTACCTTAC
91363327 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
** *
91363354 AGGGGTATTTTGGTAATTTTGTAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
* * *
91363381 AAGGTTATTTTGGTAATTTTAC-AAGT
1 AGGGGTATTTTGGTAATTTTACAAACT
* * * *
91363407 CGAGGGTATTTTAGTAATTTCACAAATT
1 AG-GGGTATTTTGGTAATTTTACAAACT
*
91363435 AGGGGTATTTTGGTAATTTCACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
91363462 AGGGGTATTTTGGTAATTTTAC
1 AGGGGTATTTTGGTAATTTTAC
91363484 TAATCGAGGG
Statistics
Matches: 109, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.02
27 103 0.94
28 4 0.04
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:91363471 original size:81 final size:81
Alignment explanation
Indices: 91363329--91363495 Score: 237
Period size: 81 Copynumber: 2.1 Consensus size: 81
91363319 TACCTTACAG
* * *** *
91363329 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGTTATTTTGG
1 GGGTATTTTAGTAATTTCACAAACTAGGGGTATTTTGGTAATTTCACAAACCAAGGGTATTTTGG
91363394 TAATTTTAC-AAGTCGA
66 TAATTTTACTAA-TCGA
* * *
91363410 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAACTAGGGGTATTTTGGTAATTTCACAAACCAAGGGTATTTTGG
91363475 TAATTTTACTAATCGA
66 TAATTTTACTAATCGA
91363491 GGGTA
1 GGGTA
91363496 AAACGGTAAT
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
81 74 0.97
82 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.41
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTCACAAACTAGGGGTATTTTGGTAATTTCACAAACCAAGGGTATTTTGG
TAATTTTACTAATCGA
Found at i:91363542 original size:81 final size:81
Alignment explanation
Indices: 91363339--91363544 Score: 211
Period size: 81 Copynumber: 2.5 Consensus size: 81
91363329 GGGTATTTTG
* * * *
91363339 GTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTAAACCAAGGTTATTTTGGTAATTTTAC
1 GTAATTTCACAAATC-AGGGGTATTTTGGTAATTTCGTAAACTAAGGGTATTTTGGTAATTTTAC
****
91363403 AAGTCGAGGGTATTTTA
65 AAGTCGAGGGTAAAACA
* ** *
91363420 GTAATTTCACAAATTAGGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACT
1 GTAATTTCACAAATCAGGGGTATTTTGGTAATTTCGTAAACTAAGGGTATTTTGGTAATTTTAC-
*
91363485 AA-TCGAGGGTAAAACG
65 AAGTCGAGGGTAAAACA
** * *
91363501 GTAA-TTCTGTAAATCAGGGGTACTTTGGTAATTTGGTAAACTAA
1 GTAATTTC-ACAAATCAGGGGTATTTTGGTAATTTCGTAAACTAA
91363545 AGTATTCTAA
Statistics
Matches: 101, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
80 3 0.03
81 96 0.95
82 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (81 bp):
GTAATTTCACAAATCAGGGGTATTTTGGTAATTTCGTAAACTAAGGGTATTTTGGTAATTTTACA
AGTCGAGGGTAAAACA
Found at i:91367847 original size:2 final size:2
Alignment explanation
Indices: 91367780--91367831 Score: 86
Period size: 2 Copynumber: 25.5 Consensus size: 2
91367770 TTGTGAATTG
*
91367780 TA TA AA TA TCA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91367823 TA TA TA TA T
1 TA TA TA TA T
91367832 GACATTGAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 45 0.96
3 2 0.04
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:91367902 original size:17 final size:17
Alignment explanation
Indices: 91367856--91367907 Score: 50
Period size: 19 Copynumber: 2.9 Consensus size: 17
91367846 ATCTGCCAAA
* *
91367856 GCCCAATAATTGATAAT
1 GCCCGATAAATGATAAT
*
91367873 GCCTGAAATAAATGATAAT
1 GCCCG--ATAAATGATAAT
*
91367892 GCCCGATAAATAATAA
1 GCCCGATAAATGATAA
91367908 ATGATAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 13 0.46
19 15 0.54
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.25
Consensus pattern (17 bp):
GCCCGATAAATGATAAT
Found at i:91378073 original size:13 final size:13
Alignment explanation
Indices: 91378055--91378083 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
91378045 TTTAGTTTAA
91378055 TTAGTTAATTAGT
1 TTAGTTAATTAGT
91378068 TTAGTTAATTAGT
1 TTAGTTAATTAGT
91378081 TTA
1 TTA
91378084 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:91382897 original size:13 final size:13
Alignment explanation
Indices: 91382879--91382907 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
91382869 TTTAGTTTAA
91382879 TTAGTTAATTAGT
1 TTAGTTAATTAGT
91382892 TTAGTTAATTAGT
1 TTAGTTAATTAGT
91382905 TTA
1 TTA
91382908 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:91383582 original size:2 final size:2
Alignment explanation
Indices: 91383575--91383614 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
91383565 TTGGCTGTCT
91383575 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91383615 CCTTCGAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91384948 original size:49 final size:49
Alignment explanation
Indices: 91384871--91385026 Score: 276
Period size: 49 Copynumber: 3.2 Consensus size: 49
91384861 TAAGTTCGTG
*
91384871 ACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* * *
91384920 ACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATATAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
91384969 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
91385018 ACACTTTCA
1 ACACTTTCA
91385027 TGTACAGACT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 100 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
Found at i:91386326 original size:2 final size:2
Alignment explanation
Indices: 91386287--91386317 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
91386277 TAAGGCATAC
91386287 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91386318 CCTATATATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91386683 original size:2 final size:2
Alignment explanation
Indices: 91386676--91386713 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
91386666 CCATTGCCGA
91386676 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91386714 CATCAAATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91391373 original size:29 final size:29
Alignment explanation
Indices: 91391338--91391411 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
91391328 GTTGTGAGAT
* *
91391338 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
91391367 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
91391396 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91391412 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:91398781 original size:2 final size:2
Alignment explanation
Indices: 91398774--91398811 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
91398764 AGTATAGTTG
* *
91398774 AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91398812 TCGGCCATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:91401291 original size:79 final size:82
Alignment explanation
Indices: 91401151--91401335 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
91401141 TCGAATGATG
* * *
91401151 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
91401215 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
91401231 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
91401293 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
91401311 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91401336 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:91401343 original size:40 final size:40
Alignment explanation
Indices: 91401152--91401343 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
91401142 CGAATGATGT
* * * * *
91401152 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
91401192 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
91401232 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
91401271 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
91401311 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
91401344 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:91401366 original size:79 final size:79
Alignment explanation
Indices: 91401151--91401368 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
91401141 TCGAATGATG
* * * * ** *
91401151 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
91401214 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
91401231 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
91401296 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
91401311 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
91401369 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:91408623 original size:48 final size:47
Alignment explanation
Indices: 91408551--91408840 Score: 366
Period size: 48 Copynumber: 6.0 Consensus size: 47
91408541 CCGTGCTAAA
* * *
91408551 TGTGCCTGTGTAAGACCATTTCTGGTACATGGCATCAGCGATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATC-GTGATGATATG
* *
91408599 TGTGCCTATGTAAGACCATGTCTGGGACATGGCATTGGTGATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCA-TCGTGATGATATG
* * * *
91408647 TGTGCCTGTGTAAGACTATCTTTGGGACATGGCATTG-GCAGTGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGTG-A-TGATATG
91408695 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGTTGATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCG-TGATGATATG
* * * *
91408743 TGTGCCAGTGTAAGACCATGTCTGGGTCATGGCATCAGTGAGGATATA
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATC-GTGATGATATG
* * *
91408791 TGAGCCTGTGTAAGACCATGCCTAGGACATGGCATCGATGATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCG-TGATGATATG
91408839 TG
1 TG
91408841 GATTCATGTA
Statistics
Matches: 210, Mismatches: 25, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
46 1 0.00
47 4 0.02
48 201 0.96
49 3 0.01
50 1 0.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (47 bp):
TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGTGATGATATG
Found at i:91408851 original size:48 final size:47
Alignment explanation
Indices: 91408559--91408873 Score: 232
Period size: 48 Copynumber: 6.6 Consensus size: 47
91408549 AATGTGCCTG
* * *
91408559 TGTAAGACCATTTCTGGTACATGGCATC-AGCGATGATATGTG-TGCCTA
1 TGTAAGACCATGTCTGGGACATGGCATCGA-TGATGATATGTGAT-CC-A
* * *
91408607 TGTAAGACCATGTCTGGGACATGGCATTGGTGATGATATGTG-TGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGATGATGATATGTGAT-CC-A
* * * * *
91408655 TGTAAGACTATCTTTGGGACATGGCATTG--GCAGTGATATGTG-TGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGATG-A-TGATATGTGAT-CC-A
*
91408703 TGTAAGACCATGTCTGGGACATGGCATCGTTGATGATATGTG-TGCCA
1 TGTAAGACCATGTCTGGGACATGGCATCGATGATGATATGTGAT-CCA
* * * * *
91408750 GTGTAAGACCATGTCTGGGTCATGGCATC-AGTGAGGATATATGAGCCTG
1 -TGTAAGACCATGTCTGGGACATGGCATCGA-TGATGATATGTGATCC-A
* * *
91408799 TGTAAGACCATGCCTAGGACATGGCATCGATGATGATATGTGGATTCA
1 TGTAAGACCATGTCTGGGACATGGCATCGATGATGATATGT-GATCCA
** * *
91408847 TGTAAGATGATTTCAGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
91408874 TGGTACTCTA
Statistics
Matches: 222, Mismatches: 34, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
46 1 0.00
47 1 0.00
48 214 0.96
49 5 0.02
50 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGATGATGATATGTGATCCA
Found at i:91408851 original size:144 final size:144
Alignment explanation
Indices: 91408559--91408873 Score: 363
Period size: 144 Copynumber: 2.2 Consensus size: 144
91408549 AATGTGCCTG
*
91408559 TGTAAGACCATTTCTGGTACATGGCATCAGCGATGATATGTGTGCCTATGTAAGACCATGTCTGG
1 TGTAAGACCATTTCTGGGACATGGCATCAGCGATGATATGTGTGCCTATGTAAGACCATGTCTGG
** * * * * * * *
91408624 GACATGGCATTGGTGATGATATGTGTGCCTGTGTAAGACTATCTTTGGGACATGGCATTGGCAGT
66 GACATGGCATCAGTGAGGATATATGAGCCTGTGTAAGACCATCTCTAGGACATGGCATCGGCAGT
* *
91408689 GATATGTGTGCCTG
131 GATATGTGTGACTA
* *
91408703 TGTAAGACCATGTCTGGGACATGGCATC-GTTGATGATATGTGTGCC-AGTGTAAGACCATGTCT
1 TGTAAGACCATTTCTGGGACATGGCATCAG-CGATGATATGTGTGCCTA-TGTAAGACCATGTCT
*
91408766 GGGTCATGGCATCAGTGAGGATATATGAGCCTGTGTAAGACCATGC-CTAGGACATGGCATC-G-
64 GGGACATGGCATCAGTGAGGATATATGAGCCTGTGTAAGACCAT-CTCTAGGACATGGCATCGGC
*
91408828 ATGATGATATGTG-GATTCA
128 A-G-TGATATGTGTGACT-A
** *
91408847 TGTAAGATGATTTCAGGGACATGGCAT
1 TGTAAGACCATTTCTGGGACATGGCAT
91408874 TGGTACTCTA
Statistics
Matches: 145, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
142 1 0.01
143 6 0.04
144 137 0.94
145 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (144 bp):
TGTAAGACCATTTCTGGGACATGGCATCAGCGATGATATGTGTGCCTATGTAAGACCATGTCTGG
GACATGGCATCAGTGAGGATATATGAGCCTGTGTAAGACCATCTCTAGGACATGGCATCGGCAGT
GATATGTGTGACTA
Found at i:91408870 original size:96 final size:94
Alignment explanation
Indices: 91408559--91408873 Score: 332
Period size: 96 Copynumber: 3.3 Consensus size: 94
91408549 AATGTGCCTG
* * *
91408559 TGTAAGACCATTTCTGGTACATGGCATCAGCGATGATATGTGTGCCTATGTAAGACCATGTCTGG
1 TGTAAGACCATTTCTGGGACATGGCATCAG-GAGGATATGTGTGCCTGTGTAAGACCATGTCTGG
* * * *
91408624 GACATGGCATTGGTGATGATATGT-GTGCCTG
65 GACATGGCATCGATGATGATATGTGGT-TC-A
* *
91408655 TGTAAGACTATCTT-TGGGACATGGCAT-TGGCAGTGATATGTGTGCCTGTGTAAGACCATGTCT
1 TGTAAGACCAT-TTCTGGGACATGGCATCAGG-AG-GATATGTGTGCCTGTGTAAGACCATGTCT
* *
91408718 GGGACATGGCATCGTTGATGATATGT-GTGCCA
63 GGGACATGGCATCGATGATGATATGTGGT-TCA
* * * * * *
91408750 GTGTAAGACCATGTCTGGGTCATGGCATCAGTGAGGATATATGAGCCTGTGTAAGACCATGCCTA
1 -TGTAAGACCATTTCTGGGACATGGCATCAG-GAGGATATGTGTGCCTGTGTAAGACCATGTCTG
91408815 GGACATGGCATCGATGATGATATGTGGATTCA
64 GGACATGGCATCGATGATGATATGTGG-TTCA
** *
91408847 TGTAAGATGATTTCAGGGACATGGCAT
1 TGTAAGACCATTTCTGGGACATGGCAT
91408874 TGGTACTCTA
Statistics
Matches: 187, Mismatches: 23, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
94 1 0.01
95 3 0.02
96 173 0.93
97 8 0.04
98 2 0.01
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (94 bp):
TGTAAGACCATTTCTGGGACATGGCATCAGGAGGATATGTGTGCCTGTGTAAGACCATGTCTGGG
ACATGGCATCGATGATGATATGTGGTTCA
Found at i:91410338 original size:46 final size:46
Alignment explanation
Indices: 91410289--91410458 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
91410279 TTGAGCATCC
*
91410289 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTC-
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG-TCG
* * * *
91410335 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG--TCG
* * * *
91410382 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCG
* *
91410428 GAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
91410459 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 57 0.56
47 25 0.25
48 4 0.04
50 6 0.06
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCG
Found at i:91410442 original size:93 final size:93
Alignment explanation
Indices: 91410283--91410453 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
91410273 GGATGGTTGA
* * * *
91410283 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTCGAACTCGTTGAGT
91410348 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
91410376 GCATCGGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC-CTGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTC-GAACTCGTTGAG
*
91410440 TTGAGTTCGAGTTC
65 TTGAGTCCGAGTTC
91410454 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:91415880 original size:93 final size:93
Alignment explanation
Indices: 91415768--91415939 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91415758 GCCCATAAGT
* *
91415768 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91415833 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
91415861 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91415926 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
91415940 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:91415935 original size:46 final size:46
Alignment explanation
Indices: 91415760--91415935 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
91415750 TGTAACCCGC
* * *
91415760 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
91415806 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
91415856 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
91415899 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91415936 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91418357 original size:29 final size:29
Alignment explanation
Indices: 91418318--91418405 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
91418308 CAAAGATAAC
*
91418318 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
91418347 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
91418376 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
91418406 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:91418376 original size:15 final size:15
Alignment explanation
Indices: 91418318--91418396 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
91418308 CAAAGATAAC
*
91418318 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
91418332 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
91418347 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
91418361 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
91418376 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
91418391 AAGAAA
1 AAGAAA
91418397 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:91418405 original size:15 final size:15
Alignment explanation
Indices: 91418329--91418405 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
91418319 AGAAAACCGA
91418329 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
91418344 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
91418358 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
91418372 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
91418388 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
91418403 ATA
1 ATA
91418406 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:91421410 original size:46 final size:46
Alignment explanation
Indices: 91421343--91421471 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
91421333 TGTAACCCGC
* * *
91421343 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
91421389 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
91421435 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91421472 TGCCCAAATA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91424283 original size:29 final size:29
Alignment explanation
Indices: 91424241--91424351 Score: 177
Period size: 29 Copynumber: 3.8 Consensus size: 29
91424231 TATATATGTG
*
91424241 AATTATCGAGCACTAAGTGTGCGAAGAAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
91424270 AATTAACGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
* *
91424299 AATTATTGAGCACTAAGTGTGCGAAGTAG
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
91424328 AACTATCGAGCACTAAGTGTGCGA
1 AATTATCGAGCACTAAGTGTGCGA
91424352 TCTTATTGCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 75 1.00
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCGAAGTAA
Found at i:91426715 original size:40 final size:39
Alignment explanation
Indices: 91426670--91426877 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
91426660 CGGAATACAA
*
91426670 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
91426710 CCGGATACAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
91426750 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
** * * *
91426790 CCGGATATAGTCACTAGCACAATTGCCTTCGAGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
91426830 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
91426870 CCGGATAT
1 CCGGATAT
91426878 CATTCAATTG
Statistics
Matches: 141, Mismatches: 26, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 140 0.99
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:91426810 original size:80 final size:80
Alignment explanation
Indices: 91426670--91426877 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
91426660 CGGAATACAA
* * * *
91426670 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATACAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
* *
91426735 CCTTCGGGTATTAGC
66 CCTTCGAGTATTAAC
* * *
91426750 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
91426814 GCCTTCGAGTCTTAAC
65 GCCTTCGAGTATTAAC
** * ** * *
91426830 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
91426878 CATTCAATTG
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGAGTATTAAC
Found at i:91433939 original size:29 final size:29
Alignment explanation
Indices: 91433897--91434007 Score: 168
Period size: 29 Copynumber: 3.8 Consensus size: 29
91433887 TATATATGTG
* *
91433897 AATTATCGAGCACTAAGTGTGTGAAGAAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
* *
91433926 AATTAACGAGCACTAAGTGTGCAAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
91433955 AATTATTGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
91433984 AACTATCGAGCACTAAGTGTGCGA
1 AATTATCGAGCACTAAGTGTGCGA
91434008 TCTCATTGCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 73 1.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCGAAGTAA
Found at i:91436154 original size:40 final size:40
Alignment explanation
Indices: 91436069--91436219 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
91436059 AATTGAATGA
* * *
91436069 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
91436109 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
91436150 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
91436189 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
91436220 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:91436233 original size:40 final size:40
Alignment explanation
Indices: 91436106--91436235 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
91436096 ATGCTGGAAA
* * * *
91436106 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
91436146 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
91436186 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
91436226 TTATATCCGG
1 TTATATCCGG
91436236 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:91443948 original size:27 final size:27
Alignment explanation
Indices: 91443871--91443959 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
91443861 ACCCCCGATT
* * *
91443871 TGTAAAATTACTAAAATACCTCTGGT-T
1 TGTAAAATTACCAAAATACC-CTTGTAG
*
91443898 TGTAAAATTACCAAAATACTCTTGTAG
1 TGTAAAATTACCAAAATACCCTTGTAG
* *
91443925 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTACCAAAATACCCTTGTAG
*
91443952 GGTAAAAT
1 TGTAAAAT
91443960 GACTACTTTT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 4 0.08
27 49 0.92
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCTTGTAG
Found at i:91443993 original size:26 final size:27
Alignment explanation
Indices: 91443943--91443993 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
91443933 TATCGAAATA
*
91443943 CCCTTGTAGGGTAAAATGACTACTTTT
1 CCCTTGTAGGGTAAAATGACGACTTTT
91443970 CCCTTGT-GGGT-AAATGACCGACTT
1 CCCTTGTAGGGTAAAATGA-CGACTT
91443994 AGACTATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 6 0.27
26 9 0.41
27 7 0.32
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (27 bp):
CCCTTGTAGGGTAAAATGACGACTTTT
Found at i:91447362 original size:2 final size:2
Alignment explanation
Indices: 91447355--91447384 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
91447345 TTCGGAAGTG
91447355 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91447385 AGTATGCCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91447898 original size:28 final size:28
Alignment explanation
Indices: 91447834--91447932 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
91447824 CATGAGATTG
* * * *
91447834 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTTC-GACTATATA
* * *
91447863 GCACTAAGTGTGTGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCGACTATATA
91447891 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTCGACTATAT-A
91447919 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
91447933 GGCTTATTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 44 0.72
29 16 0.26
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGACTATATA
Found at i:91455878 original size:17 final size:18
Alignment explanation
Indices: 91455836--91455884 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
91455826 AGTTGAAAAG
91455836 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
91455855 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
91455872 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
91455885 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:91456773 original size:40 final size:40
Alignment explanation
Indices: 91456707--91456873 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
91456697 AAATTGAATG
* * *
91456707 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
91456746 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
91456786 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
91456826 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
91456866 ATATCCGG
1 ATATCCGG
91456874 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:91463789 original size:29 final size:29
Alignment explanation
Indices: 91463755--91463857 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
91463745 TAATCAGCCG
** *
91463755 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
91463784 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
91463813 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
91463842 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
91463858 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:91468248 original size:40 final size:39
Alignment explanation
Indices: 91468137--91468287 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
91468127 ATAATCACGT
* * *
91468137 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
91468177 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
91468217 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
91468257 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
91468288 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:91468271 original size:80 final size:79
Alignment explanation
Indices: 91468137--91468287 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
91468127 ATAATCACGT
*
91468137 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
91468202 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
91468217 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
91468280 CCGGATAT
64 CCGGATAT
91468288 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:91470963 original size:40 final size:39
Alignment explanation
Indices: 91470915--91471085 Score: 229
Period size: 39 Copynumber: 4.3 Consensus size: 39
91470905 ACGACTAGCT
*
91470915 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAA-CCCGGATT-TAGTAACTCGCA
* *
91470955 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGCA
*
91470995 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
*
91471034 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
* *
91471073 CGAACGCCTTCGG
1 CAAATGCCTTCGG
91471086 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
39 73 0.60
40 45 0.37
41 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
Found at i:91471029 original size:39 final size:40
Alignment explanation
Indices: 91470915--91471138 Score: 235
Period size: 40 Copynumber: 5.7 Consensus size: 40
91470905 ACGACTAGCT
*
91470915 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAA-CCCGGATT-TAGTAACTCGCA
* *
91470955 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
91470995 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
91471034 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * ** * * * **
91471073 CGAACGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAACA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
91471114 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
91471139 CATCATTCAA
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 71 0.44
40 75 0.47
41 13 0.08
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:91479140 original size:39 final size:39
Alignment explanation
Indices: 91478987--91479156 Score: 211
Period size: 40 Copynumber: 4.3 Consensus size: 39
91478977 ACGACTAGCT
* *
91478987 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAA-CCCGGATT-TATTAACTCGCA
* * *
91479027 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
91479067 CAAATGCCTTCGGGCTTAA-CCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
*
91479105 CAAATGCCTTTGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
* *
91479144 CGAACGCCTTCGG
1 CAAATGCCTTCGG
91479157 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
38 35 0.30
39 34 0.29
40 45 0.38
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
Found at i:91484563 original size:48 final size:48
Alignment explanation
Indices: 91484499--91484624 Score: 189
Period size: 48 Copynumber: 2.6 Consensus size: 48
91484489 CAAGGTAAAT
* * *
91484499 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAGACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
91484547 ATATGTATATGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
91484595 AGATGTATATTTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
91484625 TTGTGCAATA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
Found at i:91484650 original size:48 final size:47
Alignment explanation
Indices: 91484510--91484653 Score: 173
Period size: 48 Copynumber: 3.0 Consensus size: 47
91484500 TATATATGTG
* * *
91484510 TGGTAAAGCCGAATGGCTAATATGAGACATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATATGA-ATATGTATGAGATGTGTATATT
*
91484558 TGGTAAAGCCAAATGGCTAATATGAAATATGTATGAGA-GATGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATG-TGTATATT
* * * *
91484606 TGGTAAAGCCGAATGGCTATTGTGCAATACGTAGGAGATGTGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATGTGTATATT
91484654 GTGGCCGAAT
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
48 81 0.98
49 2 0.02
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (47 bp):
TGGTAAAGCCGAATGGCTAATATGAATATGTATGAGATGTGTATATT
Found at i:91487423 original size:40 final size:40
Alignment explanation
Indices: 91487355--91487583 Score: 277
Period size: 40 Copynumber: 5.8 Consensus size: 40
91487345 AGTTACTAAT
* * *
91487355 TCCGGGCTAAG-CCCGAA-GGCAATCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGGGCATTCGTGCCAGTGTTATA
* * * * *
91487393 TCCGGGGTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGGGCATTCGTGCCAGTGTTATA
* *
91487433 TCCGGGCTAAGTCCCAAAGGGCATTCGTGCCGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGGGCATTCGTGCCAGTGTTATA
* * *
91487473 TCCGGGCTAAGTCTCGAAGGGCATTCATGCCGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGGGCATTCGTGCCAGTGTTATA
* *
91487513 TCCGGGCTAAATCCCGAAGGGTATTCGTGCC-GATGTTATA
1 TCCGGGCTAAGTCCCGAAGGGCATTCGTGCCAG-TGTTATA
91487553 TCCGGGCTCAA-TCCCGAAGGGCATTCGTGCC
1 TCCGGGCT-AAGTCCCGAAGGGCATTCGTGCC
91487584 GGTGATGTGT
Statistics
Matches: 168, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 10 0.06
39 7 0.04
40 149 0.89
41 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGGCATTCGTGCCAGTGTTATA
Found at i:91487555 original size:120 final size:121
Alignment explanation
Indices: 91487316--91487587 Score: 301
Period size: 120 Copynumber: 2.3 Consensus size: 121
91487306 CGGATGATAA
*
91487316 CCGGGCTAAGTCCCAAA-GGCAATT-GTG-C-GAGTTACTAATTCCGGGCTAAGCCCGAAGGCAA
1 CCGGGCTAAGTCCCAAAGGGC-ATTCGTGCCGGTGTTACTAATTCCGGGCTAAGCCCGAAGGCAA
* * * * * *
91487377 TCGTGCTAGTGATATATCCGGGGTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
65 TCATGCCAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCGAGTGATATAT
*
91487434 CCGGGCTAAGTCCCAAAGGGCATTCGTGCCGGTGTTA-T-A-TCCGGGCTAAGTCTCGAAGGGCA
1 CCGGGCTAAGTCCCAAAGGGCATTCGTGCCGGTGTTACTAATTCCGGGCTAAG-CCCGAA-GGCA
* * * * * *
91487496 TTCATGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGTATTCGTGCCGA-TGTTATAT
64 ATCATGCCAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTG-CGAGTGATATAT
*
91487554 CCGGGCTCAA-TCCCGAAGGGCATTCGTGCCGGTG
1 CCGGGCT-AAGTCCCAAAGGGCATTCGTGCCGGTG
91487588 ATGTGTATTC
Statistics
Matches: 131, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
118 31 0.24
119 12 0.09
120 79 0.60
121 9 0.07
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (121 bp):
CCGGGCTAAGTCCCAAAGGGCATTCGTGCCGGTGTTACTAATTCCGGGCTAAGCCCGAAGGCAAT
CATGCCAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCGAGTGATATAT
Found at i:91487584 original size:40 final size:40
Alignment explanation
Indices: 91487316--91487584 Score: 268
Period size: 40 Copynumber: 6.8 Consensus size: 40
91487306 CGGATGATAA
*
91487316 CCGGGCTAAGTCCC-AAAGGCAATT-GTG-CGA-GTTACTAATT
1 CCGGGCTAAGTCCCGAAGGGC-ATTCGTGCCGATGTTA-T-A-T
* * *
91487356 CCGGGCTAAG-CCCGAA-GGCAATCGTG-CTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGGGCATTCGTGCCGA-TGTTATAT
* * * * *
91487394 CCGGGGTAAGTCCCGAAGAGCATTCGTG-CTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGGGCATTCGTGCCGA-TGTTATAT
* *
91487434 CCGGGCTAAGTCCCAAAGGGCATTCGTGCCGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGGCATTCGTGCCGATGTTATAT
* * *
91487474 CCGGGCTAAGTCTCGAAGGGCATTCATGCCGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGGCATTCGTGCCGATGTTATAT
* *
91487514 CCGGGCTAAATCCCGAAGGGTATTCGTGCCGATGTTATAT
1 CCGGGCTAAGTCCCGAAGGGCATTCGTGCCGATGTTATAT
91487554 CCGGGCTCAA-TCCCGAAGGGCATTCGTGCCG
1 CCGGGCT-AAGTCCCGAAGGGCATTCGTGCCG
91487585 GTGATGTGTA
Statistics
Matches: 198, Mismatches: 23, Indels: 16
0.84 0.10 0.07
Matches are distributed among these distances:
38 12 0.06
39 18 0.09
40 162 0.82
41 6 0.03
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGGCATTCGTGCCGATGTTATAT
Found at i:91487805 original size:25 final size:25
Alignment explanation
Indices: 91487751--91487805 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
91487741 TGTGTAATAA
91487751 CGAATGAATAAGAGCACTATGTGCG
1 CGAATGAATAAGAGCACTATGTGCG
* * * *
91487776 TGAATG-ATTAGAGGCACTGTGTGTG
1 CGAATGAATAAGA-GCACTATGTGCG
91487801 CGAAT
1 CGAAT
91487806 TCCTCTAACC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (25 bp):
CGAATGAATAAGAGCACTATGTGCG
Found at i:91491446 original size:48 final size:48
Alignment explanation
Indices: 91491382--91491507 Score: 189
Period size: 48 Copynumber: 2.6 Consensus size: 48
91491372 CAAGGTAAAT
* * *
91491382 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAGACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
91491430 ATATGTATATGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
91491478 AGATGTATATTTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
91491508 TTGTGCAATA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
Found at i:91491533 original size:48 final size:47
Alignment explanation
Indices: 91491393--91491536 Score: 173
Period size: 48 Copynumber: 3.0 Consensus size: 47
91491383 TATATATGTG
* * *
91491393 TGGTAAAGCCGAATGGCTAATATGAGACATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATATGA-ATATGTATGAGATGTGTATATT
*
91491441 TGGTAAAGCCAAATGGCTAATATGAAATATGTATGAGA-GATGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATG-TGTATATT
* * * *
91491489 TGGTAAAGCCGAATGGCTATTGTGCAATACGTAGGAGATGTGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATGTGTATATT
91491537 GTGGCCGAAT
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
48 81 0.98
49 2 0.02
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (47 bp):
TGGTAAAGCCGAATGGCTAATATGAATATGTATGAGATGTGTATATT
Found at i:91491716 original size:37 final size:37
Alignment explanation
Indices: 91491666--91491746 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
91491656 GGAAATATAT
* *
91491666 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTCTG
1 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
*
91491703 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTTTA
1 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
91491740 TCCGGGT
1 TCCGGGT
91491747 TAAAACCCCG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.22, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
Found at i:91496364 original size:40 final size:40
Alignment explanation
Indices: 91496262--91496365 Score: 136
Period size: 40 Copynumber: 2.6 Consensus size: 40
91496252 TTATCCGGAT
* * *
91496262 TAAGACCCGAAGGCAATAGTGCTAGTAGCTATATCCGGGC
1 TAAGACCCGAAGGCATTAGTGCAAGTAGCTAAATCCGGGC
* * *
91496302 TAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGC
1 TAAGACCCGAAGGCATTAGTGCAAGTAGCTAAATCCGGGC
* *
91496342 TAAGACCCGAAGGCGTTTGTGCAA
1 TAAGACCCGAAGGCATTAGTGCAA
91496366 ATCGTGATAT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTAGTGCAAGTAGCTAAATCCGGGC
Found at i:91496378 original size:40 final size:40
Alignment explanation
Indices: 91496292--91496395 Score: 127
Period size: 40 Copynumber: 2.6 Consensus size: 40
91496282 GCTAGTAGCT
* * *
91496292 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCGTG
* * *
91496332 AAATCCGGGCTAAGACCCGAAGGCGTTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCGTG
* * *
91496372 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
91496396 CTTGGTGCGG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCGTG
Found at i:91499497 original size:28 final size:28
Alignment explanation
Indices: 91499454--91499537 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
91499444 GGAGGAAGTA
*
91499454 TTCTGGTGGCTCTGCCACAAATATTTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
91499482 TTTTGGTGGCTCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
91499510 ATCTGGTGACTCTGTCAC-AATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
91499537 T
1 T
91499538 CTAGAAGCCA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 8 0.17
28 39 0.83
ACGTcount: A:0.18, C:0.21, G:0.20, T:0.40
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:91501583 original size:13 final size:13
Alignment explanation
Indices: 91501565--91501589 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91501555 GGTTTGTTTA
91501565 TTAAACTAATTAT
1 TTAAACTAATTAT
91501578 TTAAACTAATTA
1 TTAAACTAATTA
91501590 ACTAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:91503464 original size:28 final size:28
Alignment explanation
Indices: 91503382--91503469 Score: 121
Period size: 28 Copynumber: 3.3 Consensus size: 28
91503372 CATGGTTAGA
*
91503382 CCATGGCAATGTGCTAAGTGAAATAAGA
1 CCATGGCAATGTGCTAAGTGAAATAAGT
*
91503410 CCATGGCAA----CTGAGTGAAATAAGT
1 CCATGGCAATGTGCTAAGTGAAATAAGT
*
91503434 CCATGGCAATGTGCTAAATGAAATAAGT
1 CCATGGCAATGTGCTAAGTGAAATAAGT
91503462 CCATGGCA
1 CCATGGCA
91503470 TCTTTGTGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
24 22 0.42
28 30 0.58
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (28 bp):
CCATGGCAATGTGCTAAGTGAAATAAGT
Found at i:91503564 original size:51 final size:51
Alignment explanation
Indices: 91503509--91503707 Score: 265
Period size: 51 Copynumber: 3.9 Consensus size: 51
91503499 TGAACCTTAG
* *
91503509 GAATAAAATAGCTTTGGACACAAGTGTGGTACAATGTGAAGGCCACTTTTT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
91503560 GAATATAATAGCTTTGGACACAAGTGTGGTACTATTTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * * * * * *
91503611 GAAGATAATAGATTTGGACACAAGTATGGTACTTTGTGAAGGCCACCTCGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
91503662 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAAGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
91503708 CGTGTATCTG
Statistics
Matches: 129, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
50 1 0.01
51 128 0.99
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:91507767 original size:8 final size:8
Alignment explanation
Indices: 91507754--91507783 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
91507744 AGATCGGCAC
91507754 AAGCCGAA
1 AAGCCGAA
91507762 AAGCCGAA
1 AAGCCGAA
*
91507770 ATGCCGAA
1 AAGCCGAA
91507778 AAGCCG
1 AAGCCG
91507784 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:91508166 original size:27 final size:27
Alignment explanation
Indices: 91508128--91508268 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
91508118 AGGAAGCGTC
91508128 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
91508155 CTGGTGGCTATGCCAC-ATATATCT-AT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
91508181 CCTGGTGGCTATGCCATAATTATCTGAT
1 -CTGGTGGCTATGCCACAATTATCTGAT
* *
91508209 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
91508236 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
91508263 CTGGTG
1 CTGGTG
91508269 ACTTCGTCAC
Statistics
Matches: 102, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
26 12 0.12
27 85 0.83
28 5 0.05
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:91508190 original size:54 final size:54
Alignment explanation
Indices: 91508126--91508268 Score: 225
Period size: 54 Copynumber: 2.6 Consensus size: 54
91508116 GGAGGAAGCG
91508126 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTATGCCACATATATCTA
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTATGCCACATATATCTA
* * *
91508180 TCCTGGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTATGCCACATATATCTA
* *
91508234 TTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 TCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
91508269 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.07
54 76 0.93
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTATGCCACATATATCTA
Found at i:91508279 original size:27 final size:27
Alignment explanation
Indices: 91508128--91508286 Score: 168
Period size: 27 Copynumber: 5.9 Consensus size: 27
91508118 AGGAAGCGTC
*
91508128 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
91508155 CTGGTGGCTATGCCACATATATC--TAT
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
91508181 CCTGGTGGCTATGCCATAATTATCTG-AT
1 -CTGGTGGCTCTGCCACAA-TATCTGTAT
91508209 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
91508236 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
91508263 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
91508287 GCAGCCTCAC
Statistics
Matches: 117, Mismatches: 5, Indels: 20
0.82 0.04 0.14
Matches are distributed among these distances:
26 12 0.10
27 101 0.86
28 4 0.03
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:91516233 original size:27 final size:27
Alignment explanation
Indices: 91516195--91516332 Score: 176
Period size: 27 Copynumber: 5.1 Consensus size: 27
91516185 AAGCGTCCTA
91516195 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTATGCCACAATTATCTGATCTG
91516222 GTGGCTATGCCAC-ATATATCTG-TCCTG
1 GTGGCTATGCCACAAT-TATCTGAT-CTG
91516249 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTATGCCACAATTATCTGATCTG
* *
91516276 GTGGCTCTGCCAC-ATATATCTGTTCTG
1 GTGGCTATGCCACAAT-TATCTGATCTG
* *
91516303 GTGGCTTTGCAACAA-TATCTGTATCTG
1 GTGGCTATGCCACAATTATCTG-ATCTG
91516330 GTG
1 GTG
91516333 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
26 11 0.11
27 84 0.85
28 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (27 bp):
GTGGCTATGCCACAATTATCTGATCTG
Found at i:91516254 original size:54 final size:54
Alignment explanation
Indices: 91516189--91516332 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
91516179 TGGAGGAAGC
*
91516189 GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTATGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTATGCCACATATATCT
*
91516243 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTATGCCACATATATCT
* * *
91516297 GTTCTGGTGGCTTTGCAACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
91516333 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 6 0.07
54 78 0.93
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTATGCCACATATATCT
Found at i:91516344 original size:27 final size:26
Alignment explanation
Indices: 91516205--91516350 Score: 108
Period size: 27 Copynumber: 5.4 Consensus size: 26
91516195 GTGGCTATGC
91516205 CACAATTATCTG-ATCTGGTGGCTAT-G
1 CACAA-TATCTGTATCTGGTGGCT-TCG
*
91516231 CCACATATATCTGT-CCTGGTGGCTAT-G
1 -CACA-ATATCTGTATCTGGTGGCT-TCG
91516258 CCACAATTATCTG-ATCTGGTGGC-TCTG
1 -CACAA-TATCTGTATCTGGTGGCTTC-G
*
91516285 CCACATATATCTGT-TCTGGTGGCTTTG
1 -CACA-ATATCTGTATCTGGTGGCTTCG
*
91516312 CAACAATATCTGTATCTGGTGACTTCG
1 C-ACAATATCTGTATCTGGTGGCTTCG
91516339 TCACAATATCTG
1 -CACAATATCTG
91516351 GCATCCTTGC
Statistics
Matches: 102, Mismatches: 5, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
25 1 0.01
26 10 0.10
27 87 0.85
28 4 0.04
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (26 bp):
CACAATATCTGTATCTGGTGGCTTCG
Found at i:91516344 original size:81 final size:80
Alignment explanation
Indices: 91516195--91516350 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 80
91516185 AAGCGTCCTA
* *
91516195 GTGGCTATGCCACAATTATCTGATCTGGTGGCTATGCCACATATATCTGTCCTGGTGGCTATGCC
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTATGCAACATATATCTGTCCTGGTGACTATGCC
91516260 ACAATTATCTGATCTG
66 ACAA-TATCTGATCTG
* * * *
91516276 GTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTTTGCAACA-ATATCTGTATCTGGTGACT-TC
1 GTGGCTATGCCACAAT-TATCTGATCTGGTGGCTATGCAACATATATCTGT-CCTGGTGACTAT-
*
91516338 GTCACAATATCTG
63 GCCACAATATCTG
91516351 GCATCCTTGC
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
80 17 0.26
81 48 0.74
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.35
Consensus pattern (80 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGGCTATGCAACATATATCTGTCCTGGTGACTATGCC
ACAATATCTGATCTG
Found at i:91519661 original size:37 final size:37
Alignment explanation
Indices: 91519602--91519710 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
91519592 AGCTCAGATG
* *
91519602 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
91519639 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
91519676 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
91519711 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:91519911 original size:48 final size:49
Alignment explanation
Indices: 91519856--91520613 Score: 846
Period size: 48 Copynumber: 14.9 Consensus size: 49
91519846 ACACATCGCC
*
91519856 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAACTC-A
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAA
91519904 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* * *
91519954 TATATATTTCACA-TTGACCATTCGGCTTTACCACATATGCATATCTC-A
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCAA
*
91520002 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A-A
* * *
91520054 TATATATTTCACA-TTGACCATTCGGCTTTACCACATATGCATATCTC-A
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCAA
* * *
91520102 TACATATTTCACATTAGCCGTTTGGCTTTACCACATATACATATCTCAGATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A-A
* * *
91520154 TATATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* * *
91520204 TATATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCATATATATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--------A-A
* * *
91520262 TATATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* * * *
91520312 TATATATTTCGCATTAGCCATTCGACTTTACCACATATACATATCTCATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A-A
* * *
91520364 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAA
* *
91520412 TACATATTTTACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA--TC-T-CA-A
* * *
91520466 TACATATTTCACACTAACCATTCAGCTTTACCACATTTACATATCTC-A
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAA
*
91520514 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA--TC-T-CA-A
* * *
91520568 TATATATTTCACACTAACCATTCAGCTTTACCACATATACATATCT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
91520614 TAACATCAAT
Statistics
Matches: 631, Mismatches: 43, Indels: 69
0.85 0.06 0.09
Matches are distributed among these distances:
48 209 0.33
49 6 0.01
50 142 0.23
51 6 0.01
52 139 0.22
54 79 0.13
58 50 0.08
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.36
Consensus pattern (49 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAA
Done.