Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 300 of 770
Found at i:91520247 original size:102 final size:100
Alignment explanation
Indices: 91519859--91520613 Score: 1109
Period size: 102 Copynumber: 7.4 Consensus size: 100
91519849 CATCGCCTAC
* * * *
91519859 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATAACTCATACATATTTCACACTAGCCA
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
91519924 TTCGGCTTTACCACATATACATATCTC--ATATAT
66 TTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
91519957 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
91520022 TTCGGCTTTACCACATATACATATCTCATATATAT
66 TTCGGCTTTACCACATATACATATCTCATATATAT
* * * * *
91520057 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCG
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
* *
91520122 TTTGGCTTTACCACATATACATATCTCAGATATAT
66 TTCGGCTTTACCACATATACATATCTCATATATAT
* * *
91520157 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCATATATATATTTCACACTAAC
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
*
91520222 CATTCAGCTTTACCACATATACATATCTCATATATATATATAT
64 CATTCGGCTTTACCACATATACATATCTC------ATATATAT
* *
91520265 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCATATATATATTTCGCATTAGC
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
*
91520330 CATTCGACTTTACCACATATACATATCTCATATATAT
64 CATTCGGCTTTACCACATATACATATCTCATATATAT
* * * * *
91520367 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTTACATTAGCCA
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
91520432 TTCGGCTTTACCACATATACATATCTCATACATATAC
66 TTCGGCTTTACCACATATACATATCTCAT--ATATAT
*
91520469 ATATTTCACACTAACCATTCAGCTTTACCACATTTACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
91520534 TTCGGCTTTACCACATATACATATCTCATACATATAT
66 TTCGGCTTTACCACATATACATATCTCAT--ATATAT
91520571 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCT
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCT
91520614 TAACATCAAT
Statistics
Matches: 603, Mismatches: 42, Indels: 20
0.91 0.06 0.03
Matches are distributed among these distances:
98 86 0.14
100 189 0.31
102 232 0.38
108 96 0.16
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.36
Consensus pattern (100 bp):
ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:91522926 original size:40 final size:40
Alignment explanation
Indices: 91522881--91523200 Score: 475
Period size: 40 Copynumber: 8.3 Consensus size: 40
91522871 CCTTCGAGGT
* * * *
91522881 TTAGCCTGGATATATCACTAGCACGAATGCTCTTTGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
91522921 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
91522961 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
91523001 TTAACCCGGATACATTACTAGCACGAATG--C-T-----C
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
91523033 ----CCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
91523069 TTAGCCCGGATACATTACTAGCACGAATGCTCTTTGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
91523109 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
91523149 TTAGCCCGGATACATTACTAGCACGAATGCTCTTTGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
91523189 TTAGCCCGGATA
1 TTAGCCCGGATA
91523201 TATATAACTC
Statistics
Matches: 256, Mismatches: 12, Indels: 24
0.88 0.04 0.08
Matches are distributed among these distances:
28 25 0.10
30 1 0.00
31 1 0.00
32 1 0.00
36 1 0.00
37 1 0.00
38 1 0.00
40 225 0.88
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
Found at i:91523066 original size:28 final size:28
Alignment explanation
Indices: 91523005--91523060 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
91522995 CGGAACTTAA
91523005 CCCGGATACATTACTAGCACGAATGCTC
1 CCCGGATACATTACTAGCACGAATGCTC
91523033 CCCGGATACATTACTAGCACGAATGCTC
1 CCCGGATACATTACTAGCACGAATGCTC
91523061 TTCGGAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (28 bp):
CCCGGATACATTACTAGCACGAATGCTC
Found at i:91523117 original size:108 final size:112
Alignment explanation
Indices: 91522925--91523200 Score: 416
Period size: 108 Copynumber: 2.4 Consensus size: 112
91522915 TGGAACTTAG
91522925 CCCGGATACATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CCCGGATACATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
91522990 CTCTTCGGAACTTAACCCGGATACATTACTAGCACGAATG-C-T-C-
66 CTCTTCGGAACTTAACCCGGATACATTACTAGCACGAATGCCTTACT
*
91523033 CCCGGATACATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATTACTAGCACGAATG
1 CCCGGATACATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
* *
91523098 CTCTTTGGAACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAAACTT
66 CTCTTCGGAACTTAACCCGGATACATTACTAGCACGAATGC-CTT----AC-T
*
91523151 AGCCCGGATACATTACTAGCACGAATGCTCTTTGGAACTTAGCCCGGATA
1 --CCCGGATACATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
91523201 TATATAACTC
Statistics
Matches: 152, Mismatches: 4, Indels: 12
0.90 0.02 0.07
Matches are distributed among these distances:
108 102 0.67
110 1 0.01
111 1 0.01
116 1 0.01
120 47 0.31
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (112 bp):
CCCGGATACATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
CTCTTCGGAACTTAACCCGGATACATTACTAGCACGAATGCCTTACT
Found at i:91523157 original size:148 final size:148
Alignment explanation
Indices: 91522888--91523180 Score: 523
Period size: 148 Copynumber: 2.0 Consensus size: 148
91522878 GGTTTAGCCT
* *
91522888 GGATATATCACTAGCACGAATGCTCTTTGGAACTTAGCCCGGATACATTACTAGCACGAATGCTC
1 GGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATTACTAGCACGAATGCTC
*
91522953 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAACCCGGATACATTA
66 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAAACTTAACCCGGATACATTA
91523018 CTAGCACGAATGCTCCCC
131 CTAGCACGAATGCTCCCC
*
91523036 GGATACATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATTACTAGCACGAATGCTC
1 GGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATTACTAGCACGAATGCTC
* * *
91523101 TTTGGAACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAAACTTAGCCCGGATACATTA
66 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAAACTTAACCCGGATACATTA
91523166 CTAGCACGAATGCTC
131 CTAGCACGAATGCTC
91523181 TTTGGAACTT
Statistics
Matches: 138, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
148 138 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (148 bp):
GGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATTACTAGCACGAATGCTC
TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAAACTTAACCCGGATACATTA
CTAGCACGAATGCTCCCC
Found at i:91525732 original size:47 final size:47
Alignment explanation
Indices: 91525660--91526066 Score: 607
Period size: 47 Copynumber: 8.5 Consensus size: 47
91525650 TTAAAATTTT
91525660 TGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATGAATG
91525709 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
91525756 TGAAGGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
91525805 TAAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
91525852 TGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
91525901 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATT
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
91525948 TGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* * * * * *
91525997 TGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
91526044 TGGAAGTGTATAAATGTGATAAG
1 TGAAAGTGTATATATGTGATAAG
91526067 TCCCGAAGGG
Statistics
Matches: 331, Mismatches: 21, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
47 182 0.55
49 149 0.45
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:91525771 original size:96 final size:96
Alignment explanation
Indices: 91525660--91526066 Score: 676
Period size: 96 Copynumber: 4.3 Consensus size: 96
91525650 TTAAAATTTT
* *
91525660 TGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
91525725 TGATAAGGCCTAATGGCCGATGTGATGAATG
66 TGATAAGGCCTAATGGCCGATGTGATGAATG
* *
91525756 TGAAGGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTAAAAGTGTATATATG
1 TGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
91525821 TGATAAGGCCTAATGGCCGATGTGATGAATG
66 TGATAAGGCCTAATGGCCGATGTGATGAATG
91525852 TGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
91525917 TGATAAGGCCTAATGGCCGATGTGATGAATT
66 TGATAAGGCCTAATGGCCGATGTGATGAATG
*
91525948 TGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATG
1 TGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
* * * * * *
91526013 TGATAGGGCCGAGTGGCCAACGTGATGGATG
66 TGATAAGGCCTAATGGCCGATGTGATGAATG
91526044 TGGAA-GTGTATA-A-ATGTGATAAG
1 T-GAAGGTGTATATATATGTGATAAG
91526067 TCCCGAAGGG
Statistics
Matches: 295, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
94 10 0.03
95 1 0.00
96 281 0.95
97 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
TGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
TGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:91530991 original size:46 final size:46
Alignment explanation
Indices: 91530941--91531113 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
91530931 TGGTTGAGCA
* * *
91530941 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
91530987 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
91531034 TCCGAACTCGTTGAGTTCAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
91531080 GCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
91531114 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 57 0.56
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:91531097 original size:93 final size:93
Alignment explanation
Indices: 91530938--91531108 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
91530928 GGATGGTTGA
* * * *
91530938 GCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCCAAGTTCACTTATGGATGCAAACGGCCGAACTCGTTGAGT
91531003 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
91531031 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCATTTATGGATGCGAACGGCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCCAAGTTCACTTATGGATGCAAACGGCCGAACTCGTTGAGT
*
91531096 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
91531109 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTCAGTCCAAGTTCACTTATGGATGCAAACGGCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:91531375 original size:19 final size:20
Alignment explanation
Indices: 91531338--91531375 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
91531328 ATAAGGTGGT
91531338 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
91531358 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
91531376 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:91538721 original size:12 final size:13
Alignment explanation
Indices: 91538704--91538732 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
91538694 CTCATACATG
91538704 AATAAATAAA-GC
1 AATAAATAAATGC
91538716 AATAAATAAATGC
1 AATAAATAAATGC
91538729 AATA
1 AATA
91538733 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:91541100 original size:152 final size:153
Alignment explanation
Indices: 91540782--91541689 Score: 1178
Period size: 152 Copynumber: 6.0 Consensus size: 153
91540772 GCTGAAATTG
* * * *
91540782 ATGTATAAGATATGTATATGTGGTAAAGCTGAATGGTTAGTGTGAAATATATATATGTATGAGAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-ATATATATGTATGAGAT
*
91540847 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
63 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAG
* * * *
91540912 CTGAATGGTTAGTGTGAAATATGTAT
128 CCGAATGGCTAATGTGAAATATATAT
*
91540938 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-A-A-ATATGTATGAGATAAG
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATGTATGAGATATG
*
91541000 TATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGTATATGTGGTAAAGC
66 TATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
* * *
91541065 TGAATGGTTAGTGTGAAATATATAT
129 CGAATGGCTAATGTGAAATATATAT
91541090 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-A-A-ATATGTATGAGATATG
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATGTATGAGATATG
91541152 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAGATATGTATATGTGGTAAA
66 TATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATATATGAGATATGTATATGTGGTAAA
*
91541217 GCCGAATGGCTAATGCGAAATATATAT
127 GCCGAATGGCTAATGTGAAATATATAT
* * * *
91541244 A--TATGAGATATGTATATGTGGTAAAGCTGAATGGTTAGTGTGAAATATATATATATGAGATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AATATATATGTATGAGATAT
* * *
91541307 GTATATGTGGTAAAGCTGAATGGTTAGTGTGAAATATATATATATGAGATATGTATATGTGGTAA
65 GTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATATATGAGATATGTATATGTGGTAA
*
91541372 AGCCGAACGGCTAATGTG----A-A-AT
126 AGCCGAATGGCTAATGTGAAATATATAT
* *
91541394 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATA
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AATATATATGTATGAGATA
* * * *
91541458 TGTATATGTGGTAAAGCTGAACGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGC
64 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGC
91541523 CGAATGG-TCAATGTG-AA-ATATAT
129 CGAATGGCT-AATGTGAAATATATAT
* * *
91541546 A--TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTATG-A-A-ATATGTATGAGTTATG
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATGTATGAGATATG
* * *
91541606 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGTTATGTATATGTGGTAAAGCCG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
*
91541671 AATGGCTAGTGTGAAATAT
131 AATGGCTAATGTGAAATAT
91541690 GTAGGCGATG
Statistics
Matches: 689, Mismatches: 43, Indels: 48
0.88 0.06 0.06
Matches are distributed among these distances:
146 84 0.12
147 5 0.01
148 44 0.06
149 1 0.00
150 85 0.12
151 7 0.01
152 272 0.39
153 2 0.00
154 56 0.08
155 1 0.00
156 132 0.19
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (153 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATGTATGAGATATG
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
AATGGCTAATGTGAAATATATAT
Found at i:91541692 original size:48 final size:50
Alignment explanation
Indices: 91540774--91541689 Score: 1155
Period size: 48 Copynumber: 18.2 Consensus size: 50
91540764 AAGCTATTGC
* * * *
91540774 TGAAAT-TGATGTATAAGATATGTATATGTGGTAAAGCTGAATGGTTAGTG
1 TGAAATAT-ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
91540824 TGAAATATATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 TG--A-A-ATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* * *
91540878 TG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGTTAGTG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
91540926 TGAAATATGTATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 TG-AA-A--TATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
91540980 TG-AA-ATATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* * * * *
91541028 CGAAATATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAGTG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
91541078 TGAAATATATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 TG--A-A-ATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
91541132 TG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
91541180 TGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 TG-AA-ATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* * * * *
91541232 CGAAATATATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAGTG
1 TG-AA-ATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* * * *
91541284 TGAAATATATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAGTG
1 TG-AA-ATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* *
91541336 TGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAACGGCTAATG
1 TG-AA-ATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
91541388 TG-AA-ATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATG
* * *
91541436 TGAAATATATATATATGAGATATGTATATGTGGTAAAGCTGAACGGCTAATG
1 TG-AA-ATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
91541488 TG-AA-ATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATG
* * *
91541536 TGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTA
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* *
91541586 TG-AA-ATATGTATGAGTTATGTATATGTGGTAAAGCCGAATGGCTAGTG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* *
91541634 TG-AA-ATATGTATGAGTTATGTATATGTGGTAAAGCCGAATGGCTAGTG
1 TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
91541682 TGAAATAT
1 TGAAATAT
91541690 GTAGGCGATG
Statistics
Matches: 783, Mismatches: 50, Indels: 66
0.87 0.06 0.07
Matches are distributed among these distances:
47 2 0.00
48 305 0.39
49 12 0.02
50 91 0.12
51 5 0.01
52 235 0.30
53 3 0.00
54 129 0.16
55 1 0.00
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (50 bp):
TGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
Found at i:91541947 original size:37 final size:37
Alignment explanation
Indices: 91541839--91541947 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
91541829 GGAAATATAT
*
91541839 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
91541876 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
91541913 TCTGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
91541948 CATCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:91546597 original size:19 final size:20
Alignment explanation
Indices: 91546573--91546610 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
91546563 GGTACCACCA
91546573 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
91546592 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
91546611 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:91546951 original size:93 final size:93
Alignment explanation
Indices: 91546840--91547010 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
91546830 GCCCCTAAGT
* * *
91546840 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCACATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
* *
91546905 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCAGATGCCTAGTTACATCTCAC
* ** * *
91546933 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
91546998 CGAGCTCAGATGC
66 CGAGCTCAGATGC
91547011 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCAC
Found at i:91547000 original size:46 final size:46
Alignment explanation
Indices: 91546835--91547001 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 46
91546825 AACCCGCCCC
* * * * *
91546835 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
* *
91546881 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACATCCA
* * *
91546929 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
*
91546974 TAAGTGAACTTGGACTCAACTCAACGAG
1 TAAGTGAACTCGGACTCAACTCAACGAG
91547002 CTCAGATGCT
Statistics
Matches: 100, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 52 0.52
47 29 0.29
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
Found at i:91547464 original size:30 final size:30
Alignment explanation
Indices: 91547430--91547489 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
91547420 ATTTAATACG
91547430 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
91547460 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
91547490 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:91552302 original size:164 final size:164
Alignment explanation
Indices: 91552031--91552352 Score: 527
Period size: 164 Copynumber: 2.0 Consensus size: 164
91552021 AGTTGTCATC
* * *
91552031 TACCATTTGAGCTAGAACATAAGGCATTTTAGGCTATAAAGTTTCTAAACCTTGATCTCAGACTT
1 TACCATTTGAGCTAGAACATAAGGCATTCTAGGCTATAAAGTCTCTAAACCTTGATCTCAAACTT
* *
91552096 ACAGGTGAAAACAGGTTGATGCAATTAAATGAGTTAGATGAATAGTAAACCAATGCATATGAAAA
66 ACAGGTGAAAACAAGTTGATGCAATTAAATGAGTTAGATGAATAGCAAACCAATGCATATGAAAA
* *
91552161 TTCACGCCTATACAAGGAAGCGACAAAGCGCCTA
131 TTCACGCCTATACAAGAAAGCAACAAAGCGCCTA
* *
91552195 TACCATTTGAGCTAGAACATAAGGCATTCTGGGCTATAAAGTCTCTAAATCTTGATCTCAAACTT
1 TACCATTTGAGCTAGAACATAAGGCATTCTAGGCTATAAAGTCTCTAAACCTTGATCTCAAACTT
* * * *
91552260 GCAGGTGAAAACAAGTTGATGCAGTTAAATGAGTTAGATGAATGGCGAACCAATGCATATGAAAA
66 ACAGGTGAAAACAAGTTGATGCAATTAAATGAGTTAGATGAATAGCAAACCAATGCATATGAAAA
91552325 TTCACGCCTATACAAGAAAGCAACAAAG
131 TTCACGCCTATACAAGAAAGCAACAAAG
91552353 TGCCGCCACA
Statistics
Matches: 145, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
164 145 1.00
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (164 bp):
TACCATTTGAGCTAGAACATAAGGCATTCTAGGCTATAAAGTCTCTAAACCTTGATCTCAAACTT
ACAGGTGAAAACAAGTTGATGCAATTAAATGAGTTAGATGAATAGCAAACCAATGCATATGAAAA
TTCACGCCTATACAAGAAAGCAACAAAGCGCCTA
Found at i:91562538 original size:27 final size:28
Alignment explanation
Indices: 91562481--91562550 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
91562471 AAATTTGTAC
**
91562481 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
91562509 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
91562536 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
91562551 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:91562559 original size:27 final size:27
Alignment explanation
Indices: 91562481--91562562 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
91562471 AAATTTGTAC
* *
91562481 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
91562509 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
91562536 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
91562563 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:91570462 original size:27 final size:28
Alignment explanation
Indices: 91570405--91570474 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
91570395 AAATTTGTAC
**
91570405 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
91570433 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
91570460 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
91570475 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:91570483 original size:27 final size:27
Alignment explanation
Indices: 91570405--91570486 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
91570395 AAATTTGTAC
* *
91570405 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
91570433 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
91570460 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
91570487 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:91574415 original size:40 final size:40
Alignment explanation
Indices: 91574370--91574535 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
91574360 CGGAATATAA
91574370 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
91574410 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
91574450 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
91574489 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
91574528 CCGGATAT
1 CCGGATAT
91574536 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:91574492 original size:39 final size:38
Alignment explanation
Indices: 91574386--91574497 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
91574376 ATAATCACGT
* * *
91574386 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
91574426 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
91574465 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
91574498 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:91574519 original size:79 final size:78
Alignment explanation
Indices: 91574386--91574535 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
91574376 ATAATCACGT
*
91574386 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
91574451 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
91574465 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
91574528 CCGGATAT
64 CCGGATAT
91574536 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:91575378 original size:17 final size:19
Alignment explanation
Indices: 91575355--91575400 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
91575345 AAGAAGCATG
91575355 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
91575373 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
91575391 AATCATGCTC
1 AATCATGCTC
91575401 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:91582412 original size:40 final size:40
Alignment explanation
Indices: 91582367--91582533 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
91582357 CGGAATATAA
91582367 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
91582407 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
91582447 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
91582487 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
91582526 CCGGATAT
1 CCGGATAT
91582534 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:91582517 original size:80 final size:79
Alignment explanation
Indices: 91582367--91582533 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
91582357 CGGAATATAA
* *
91582367 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
91582432 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
91582447 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
91582509 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
91582526 CCGGATAT
1 CCGGATAT
91582534 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:91583376 original size:17 final size:19
Alignment explanation
Indices: 91583353--91583398 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
91583343 AAGAAGCATG
91583353 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
91583371 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
91583389 AATCATGCTC
1 AATCATGCTC
91583399 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:91584351 original size:12 final size:12
Alignment explanation
Indices: 91584334--91584359 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91584324 ACAGGCTTGG
91584334 CATGGCCTAGCA
1 CATGGCCTAGCA
91584346 CATGGCCTAGCA
1 CATGGCCTAGCA
91584358 CA
1 CA
91584360 CGGGCATGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15
Consensus pattern (12 bp):
CATGGCCTAGCA
Found at i:91593693 original size:39 final size:39
Alignment explanation
Indices: 91593568--91593776 Score: 278
Period size: 39 Copynumber: 5.3 Consensus size: 39
91593558 GCTACTCGTT
* *
91593568 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATT-TAGTAACTCGCA
*
91593608 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGCA
* * * *
91593648 CCAATGCCTTCGGGCTTATCCCGGAATTAGTAACTCACA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
* *
91593687 CAAATGCCTTCGGACTT-ACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
* *
91593725 CAAATGCCTTCGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
91593764 CAAATGCCTTCGG
1 CAAATGCCTTCGG
91593777 ATCTTAGTCC
Statistics
Matches: 151, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
38 34 0.23
39 68 0.45
40 47 0.31
41 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
Found at i:91593735 original size:77 final size:77
Alignment explanation
Indices: 91593568--91593782 Score: 288
Period size: 77 Copynumber: 2.7 Consensus size: 77
91593558 GCTACTCGTT
* *
91593568 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGG-CTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGACTT-ACCCG
* *
91593632 GATTTAGTGACTCGCA
62 AATTTAGTAACTCGCA
* * * *
91593648 CCAATGCCTTCGGGCTTATCCCGGAATTAGTAACTCACACAAATGCCTTCGGACTTACCCGAATT
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTACCCGAATT
91593713 TAGTAACTCGCA
66 TAGTAACTCGCA
* *
91593725 CAAATGCCTTCGGACTTAACCCAGATTTAGTAACTCGCACAAATGCCTTCGGATCTTA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGA-CTTA
91593783 GTCCAGACAT
Statistics
Matches: 120, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
77 66 0.55
78 10 0.08
79 30 0.25
80 14 0.12
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTACCCGAATT
TAGTAACTCGCA
Found at i:91601801 original size:40 final size:40
Alignment explanation
Indices: 91601641--91601888 Score: 319
Period size: 40 Copynumber: 6.3 Consensus size: 40
91601631 GCTACTCGTT
* * *
91601641 CAAATGCCTTCGGGACATATCCTGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
91601681 CAAATGCCTTCGGGACTTAACCC-GATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
91601720 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
91601759 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
91601799 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
91601839 CCAATGCCTTCGGG-CTT-AGCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
91601877 CAAA-GCCTTCGG
1 CAAATGCCTTCGG
91601889 ATTAGTCTGG
Statistics
Matches: 184, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
37 8 0.04
38 28 0.15
39 54 0.29
40 94 0.51
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:91601816 original size:118 final size:118
Alignment explanation
Indices: 91601641--91601888 Score: 385
Period size: 118 Copynumber: 2.1 Consensus size: 118
91601631 GCTACTCGTT
* * *
91601641 CAAATGCCTTCGGGACATATCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC-G
1 CAAATGCCTTCGGGACATACCCAGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
91601705 ATTTAGTGACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCACA
66 ATTTAGTAACTCGCACCAATGCCTTCGGGCTTAG-CCGGAATTAGTAACTCACA
* *
91601759 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTTGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACAT-ACCCAGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
91601823 GATTTAGTAACTTGCACCAATGCCTTCGGGCTTAGCCGGAATTAGTAACTCGCA
65 GATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCGGAATTAGTAACTCACA
91601877 CAAA-GCCTTCGG
1 CAAATGCCTTCGG
91601889 ATTAGTCTGG
Statistics
Matches: 120, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
117 8 0.07
118 73 0.61
119 39 0.32
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (118 bp):
CAAATGCCTTCGGGACATACCCAGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCGGAATTAGTAACTCACA
Found at i:91602013 original size:13 final size:13
Alignment explanation
Indices: 91601995--91602022 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
91601985 ACTTATCACA
91601995 CTTGCAATTTCGG
1 CTTGCAATTTCGG
91602008 CTTGCAATTTCGG
1 CTTGCAATTTCGG
91602021 CT
1 CT
91602023 CAATAGCCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.25, G:0.21, T:0.39
Consensus pattern (13 bp):
CTTGCAATTTCGG
Found at i:91603971 original size:40 final size:40
Alignment explanation
Indices: 91603916--91604130 Score: 269
Period size: 40 Copynumber: 5.4 Consensus size: 40
91603906 ATGATAACCA
91603916 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-TCCG
* * *
91603956 GGCTATGTCCTGAAGGCATTTGTGCGAGTTACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-TCCG
*
91603996 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCG
* *
91604036 GGCTAAGTCCCGAAGGCATTTGTACGAA-CTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTATATCCG
* *
91604076 GGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATATCCG
* *
91604115 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
91604131 TACATGGTTT
Statistics
Matches: 158, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 17 0.11
40 139 0.88
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCG
Found at i:91610737 original size:49 final size:49
Alignment explanation
Indices: 91610665--91610852 Score: 232
Period size: 49 Copynumber: 3.8 Consensus size: 49
91610655 TGAGGTTACG
* * **
91610665 TGTGTAGCACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
* * * * * *
91610714 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-T-TGGTCGCA
* * *
91610765 TGTGTAGTACCAAGTGCAGGCTACTATGTGTACCAAATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
*
91610814 TGTGTAGTACTAAGTGCAAGCTACTATGTGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
91610853 GCTTCGGCTA
Statistics
Matches: 115, Mismatches: 22, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
49 74 0.64
50 2 0.02
51 39 0.34
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
Found at i:91610837 original size:100 final size:100
Alignment explanation
Indices: 91610662--91610847 Score: 291
Period size: 100 Copynumber: 1.9 Consensus size: 100
91610652 TTGTGAGGTT
* ***
91610662 ACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGTACTAA
1 ACGTGTGTAGCACCAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCGCATGTGTAGTACTAA
*
91610727 GTGCAGGCTACTATGCGTACCCGAAAACTATGATC
66 GTGCAAGCTACTATGCGTACCCGAAAACTATGATC
* * *
91610762 ACGTGTGTAGTACCAAGTGCAGGCTACTATGTGTACCAAATTATTGGTCGCATGTGTAGTACTAA
1 ACGTGTGTAGCACCAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCGCATGTGTAGTACTAA
*
91610827 GTGCAAGCTACTATGTGTACC
66 GTGCAAGCTACTATGCGTACC
91610848 AGATAGCTTC
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (100 bp):
ACGTGTGTAGCACCAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCGCATGTGTAGTACTAA
GTGCAAGCTACTATGCGTACCCGAAAACTATGATC
Found at i:91613062 original size:46 final size:46
Alignment explanation
Indices: 91612995--91613166 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
91612985 AACCCGCCCC
* *
91612995 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
91613041 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
91613089 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
91613134 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
91613167 ATGCTTAACC
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 59 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:91613108 original size:93 final size:93
Alignment explanation
Indices: 91613000--91613170 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
91612990 GCCCCTAAGT
* * *
91613000 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91613065 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
91613093 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91613158 CGAGTTCGGATGC
66 CGAGTTCGGATGC
91613171 TTAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:91621958 original size:40 final size:40
Alignment explanation
Indices: 91621879--91622042 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
91621869 CGAATGATAA
* * ** *
91621879 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTCGCTATAT
* *
91621919 CCGGGCTATA-ACCCGAAGGCATTTATGCTAG-CGATTATAT
1 CCGGGCTA-AGACCCGAAGGCATTTATGCGAGTCG-CTATAT
* *
91621959 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTCGCTATAT
* * * *
91621999 CCGGGGTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTCGCTATAT
91622039 CCGG
1 CCGG
91622043 TTAAATCCCG
Statistics
Matches: 107, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
39 2 0.02
40 103 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTCGCTATAT
Found at i:91622037 original size:80 final size:80
Alignment explanation
Indices: 91621879--91622042 Score: 233
Period size: 80 Copynumber: 2.0 Consensus size: 80
91621869 CGAATGATAA
*
91621879 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATAACCCGAAGGCATTTA
1 CCGGACTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATAACCCGAAGGCATTTA
*
91621944 TGCTAGCGATTATAT
66 TGCGAGCGATTATAT
* * *
91621959 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGGTA-AGACCCGAAGGCATTT
1 CCGGACTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATA-ACCCGAAGGCATTT
* *
91622023 GTGCGAGTTG-TTATAT
65 ATGCGAG-CGATTATAT
91622039 CCGG
1 CCGG
91622043 TTAAATCCCG
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
79 1 0.01
80 73 0.97
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGGACTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATAACCCGAAGGCATTTA
TGCGAGCGATTATAT
Found at i:91625871 original size:93 final size:93
Alignment explanation
Indices: 91625764--91625934 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
91625754 GCCCCTAAGT
* * *
91625764 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTTAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
91625829 TGTGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
91625857 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
91625922 CGAGTTCGGATGC
66 CGAGTTCGGATGC
91625935 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:91625918 original size:46 final size:45
Alignment explanation
Indices: 91625761--91625931 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 45
91625751 CCCGCCCCTA
* * *
91625761 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
* * * * *
91625806 AAGTGAACTCAGACTCAACTTAATGTGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT
*
91625854 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
91625899 AGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 A-GTGAACTCGGACTCAACTCAACGAGTTCGGA
91625932 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 16, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 1 0.01
46 55 0.56
47 25 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:91627562 original size:29 final size:28
Alignment explanation
Indices: 91627528--91627630 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 28
91627518 TACTCGATTT
* *
91627528 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCAT-CCATTTAAGCA
* * ** *
91627557 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCAT-CCATTTAAGCA
** *
91627586 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATCCATTT-AAGCA
91627615 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
91627631 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 2 0.03
29 57 0.97
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATCCATTTAAGCA
Found at i:91635007 original size:29 final size:28
Alignment explanation
Indices: 91634974--91635075 Score: 87
Period size: 29 Copynumber: 3.5 Consensus size: 28
91634964 ACTCGATTTT
* *
91634974 GCACACTTAGTGCCATGCGATTTAAGCCC
1 GCACACTTAGTGCCAT-CCATTTAAGCAC
* * ** *
91635003 GCACACATAGTGCCATACCCTTCGAGCTC
1 GCACACTTAGTGCCAT-CCATTTAAGCAC
** *
91635032 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATCCATTT-AAGCAC
91635061 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
91635076 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
28 2 0.03
29 56 0.97
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (28 bp):
GCACACTTAGTGCCATCCATTTAAGCAC
Found at i:91648210 original size:17 final size:19
Alignment explanation
Indices: 91648168--91648211 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
91648158 ATGAAATTTT
* *
91648168 AATTAGTATTATGAGATAA
1 AATTATTATTATCAGATAA
91648187 AATTATTATTATCAGA-AA
1 AATTATTATTATCAGATAA
91648205 AA-TATTA
1 AATTATTA
91648212 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTATTATTATCAGATAA
Found at i:91661192 original size:24 final size:24
Alignment explanation
Indices: 91661165--91661211 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
91661155 ATATGTTGAC
91661165 ATTCAAATCAGCACACATAGTGCT
1 ATTCAAATCAGCACACATAGTGCT
* *
91661189 ATTCAACTCCGCACACATAGTGC
1 ATTCAAATCAGCACACATAGTGC
91661212 CATACTACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.30, G:0.13, T:0.23
Consensus pattern (24 bp):
ATTCAAATCAGCACACATAGTGCT
Found at i:91661245 original size:24 final size:24
Alignment explanation
Indices: 91661175--91661237 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
91661165 ATTCAAATCA
* * * *
91661175 GCACACATAGTGCTATTCAACTCC
1 GCACACATAGTGCCATACTACACC
91661199 GCACACATAGTGCCATACTACACC
1 GCACACATAGTGCCATACTACACC
91661223 GCACACATAGTGCCA
1 GCACACATAGTGCCA
91661238 ATGTACACTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.32, C:0.35, G:0.14, T:0.19
Consensus pattern (24 bp):
GCACACATAGTGCCATACTACACC
Found at i:91667252 original size:42 final size:42
Alignment explanation
Indices: 91667159--91667268 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
91667149 CTCATACAAC
* * *
91667159 GCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATGAT
1 GCCAATGTCCCAGACAG-GGTCTTACATGAAATCAAATACGAT
*
91667201 GCCACTGTCCCAGACAGGGTCTTACATGAAATCAAATACGAT
1 GCCAATGTCCCAGACAGGGTCTTACATGAAATCAAATACGAT
** * * *
91667243 GTTAATGTCCCAAACATGGTTTTACA
1 GCCAATGTCCCAGACAGGGTCTTACA
91667269 CATAAATCTC
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 56 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
GCCAATGTCCCAGACAGGGTCTTACATGAAATCAAATACGAT
Found at i:91669635 original size:18 final size:20
Alignment explanation
Indices: 91669599--91669645 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
91669589 AGTTGTAAGT
91669599 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
91669619 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
91669638 ATGATATA
1 AT-ATATA
91669646 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:91671258 original size:44 final size:45
Alignment explanation
Indices: 91671204--91671416 Score: 157
Period size: 47 Copynumber: 4.6 Consensus size: 45
91671194 TATGCGTGCT
91671204 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-GGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-CAACTCTGTAGGCC
* * * * *
91671248 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCCAACTCTGT--AGGCC
* * * **
91671295 GATGCATGTCCCAGACATGTCTTACTCT-GGC-ACTCATAATATGGTT
1 GATGCATGTCCCAGACATGTCTTACACTAGCCAACTC-T-GTA-GGCC
* * * * *
91671341 GAAGCATGCCCCAGACATGTCTTACACTAGACC-TCATCTGGATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAG-CCAAC-TCTGTAGGCC
*
91671387 GATGCCATGTCTCAGACATAGTCTTACACT
1 GATG-CATGTCCCAGACAT-GTCTTACACT
91671417 GGCACACAAA
Statistics
Matches: 130, Mismatches: 27, Indels: 20
0.73 0.15 0.11
Matches are distributed among these distances:
43 5 0.04
44 29 0.22
45 4 0.03
46 33 0.25
47 44 0.34
48 13 0.10
49 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCCAACTCTGTAGGCC
Found at i:91672140 original size:12 final size:12
Alignment explanation
Indices: 91672123--91672148 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91672113 CTAAAAATGT
91672123 GAAAATCATCAA
1 GAAAATCATCAA
91672135 GAAAATCATCAA
1 GAAAATCATCAA
91672147 GA
1 GA
91672149 TCACTTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (12 bp):
GAAAATCATCAA
Found at i:91678438 original size:25 final size:25
Alignment explanation
Indices: 91678410--91678457 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
91678400 TCACATAGCC
91678410 AAATGCATCATTTCATTAATACATT
1 AAATGCATCATTTCATTAATACATT
91678435 AAATGCATCATTTCATTAATACA
1 AAATGCATCATTTCATTAATACA
91678458 CATTCTTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.42, C:0.17, G:0.04, T:0.38
Consensus pattern (25 bp):
AAATGCATCATTTCATTAATACATT
Found at i:91678719 original size:40 final size:40
Alignment explanation
Indices: 91678674--91678841 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
91678664 CGGAATATAA
91678674 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
91678714 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
91678754 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
91678794 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
91678834 CCGGATAT
1 CCGGATAT
91678842 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:91678824 original size:80 final size:80
Alignment explanation
Indices: 91678690--91678839 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
91678680 ATAATCACGT
*
91678690 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
91678754 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
91678770 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
91678833 CCCGGAT
64 CCCGGAT
91678840 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:91686707 original size:40 final size:40
Alignment explanation
Indices: 91686662--91686829 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
91686652 CGGAATATAA
91686662 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
91686702 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
91686742 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
91686782 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
91686822 CCGGATAT
1 CCGGATAT
91686830 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:91686812 original size:80 final size:80
Alignment explanation
Indices: 91686678--91686827 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
91686668 ATAATCACGT
*
91686678 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
91686742 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
91686758 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
91686821 CCCGGAT
64 CCCGGAT
91686828 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:91691697 original size:66 final size:67
Alignment explanation
Indices: 91691621--91691807 Score: 270
Period size: 71 Copynumber: 2.7 Consensus size: 67
91691611 TAGTACCACT
*
91691621 CATGCGACCTAGC-CGATTTGTCT-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
1 CATGCGACCTAGCAC-ATTTATCTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
91691684 ACG
65 ACG
91691687 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC--T-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
91691752 ATCACG
62 ATCACG
91691758 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTA--TCT-ACGTAGCTCTCTTGTCTACATGG
91691808 ATACATCTCG
Statistics
Matches: 112, Mismatches: 1, Indels: 11
0.90 0.01 0.09
Matches are distributed among these distances:
66 13 0.12
67 6 0.05
68 1 0.01
69 1 0.01
71 89 0.79
73 2 0.02
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (67 bp):
CATGCGACCTAGCACATTTATCTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCA
CG
Found at i:91691732 original size:71 final size:71
Alignment explanation
Indices: 91691644--91691807 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
91691634 CGATTTGTCT
91691644 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
*
91691709 CTTTCA
66 CTCTCA
91691715 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
91691780 CTCTCA
66 CTCTCA
91691786 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
91691808 ATACATCTCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTCTCA
Found at i:91695523 original size:66 final size:68
Alignment explanation
Indices: 91695394--91695523 Score: 167
Period size: 66 Copynumber: 1.9 Consensus size: 68
91695384 GGGATGTATC
* *
91695394 CCATGTAGACAAGAGAGCTATGTGAGAGATAAATGTAGCTAGGTTGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTA--TGAGAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
91695459 AGGACA
63 AGGACA
* *
91695465 CCATGTAGACAAGAGAGCTA-G-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTATGAGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
91695524 TTCACCATGT
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
66 23 0.43
67 9 0.17
68 2 0.04
71 20 0.37
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.22
Consensus pattern (68 bp):
CCATGTAGACAAGAGAGCTATGAGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGG
ACA
Found at i:91702305 original size:27 final size:26
Alignment explanation
Indices: 91702257--91702316 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
91702247 ACGAGGCTGC
*
91702257 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
91702284 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
91702310 CAGATAT
1 CAGATAT
91702317 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:91703043 original size:26 final size:27
Alignment explanation
Indices: 91703014--91703067 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
91703004 TCACACAAGT
*
91703014 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
91703040 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
91703067 T
1 T
91703068 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:91703098 original size:27 final size:27
Alignment explanation
Indices: 91703068--91703182 Score: 106
Period size: 27 Copynumber: 4.3 Consensus size: 27
91703058 GGGGCAAAAT
* *
91703068 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
91703095 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
91703122 GGT-ATTTCTATCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * ** *
91703149 AGTAATTCTATCCTGTAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
91703176 GATAATT
1 GGTAATT
91703183 CTACAACTTA
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 3 0.04
27 66 0.92
28 3 0.04
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:91703140 original size:54 final size:54
Alignment explanation
Indices: 91703082--91703185 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
91703072 ATTTTACCCC
* * *
91703082 ACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTATCCT
1 ACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTATCCT
* * **
91703136 ACAAGGGTATTTCAGTAATTCTATCCTGTAGGGGTATTTCGATAATTCTA
1 ACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTA
91703186 CAACTTATCT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (54 bp):
ACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTATCCT
Found at i:91703183 original size:27 final size:27
Alignment explanation
Indices: 91703086--91703185 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
91703076 TACCCCACAA
* * *
91703086 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTATCCTACAG
* * *
91703113 GGGTATTTCGGTATTTCTATCCTACAA
1 GGGTATTTCGATAATTCTATCCTACAG
**
91703140 GGGTATTTC-AGTAATTCTATCCTGTAG
1 GGGTATTTCGA-TAATTCTATCCTACAG
91703167 GGGTATTTCGATAATTCTA
1 GGGTATTTCGATAATTCTA
91703186 CAACTTATCT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
27 61 0.98
28 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTATCCTACAG
Found at i:91712660 original size:40 final size:40
Alignment explanation
Indices: 91712534--91712692 Score: 144
Period size: 40 Copynumber: 3.9 Consensus size: 40
91712524 ACCAATAATC
* *
91712534 TAGCCAAAGCTATA-AAATATCACACACTTAGTGCCATCATA
1 TAGCCAAAGCTATATCAA-ATCGCACACTTAGTGCCA-CATA
* * *
91712575 TTAGACCGAAA-TTATCTCAATATGGCACACTTAGTGCCACATA
1 -TAG-CC-AAAGCTATATCAA-ATCGCACACTTAGTGCCACATA
* * **
91712618 TAGCCAAAGCTAT-TCCAATTCGCACACTTAGTGCTATTTA
1 TAGCCAAAGCTATAT-CAAATCGCACACTTAGTGCCACATA
*
91712658 TAGCCAAAGCTATATCAAATCGCACATTTAGTGCC
1 TAGCCAAAGCTATATCAAATCGCACACTTAGTGCC
91712693 GAACATAGTC
Statistics
Matches: 97, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
40 51 0.53
41 9 0.09
42 6 0.06
43 9 0.09
44 22 0.23
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.28
Consensus pattern (40 bp):
TAGCCAAAGCTATATCAAATCGCACACTTAGTGCCACATA
Found at i:91717061 original size:30 final size:30
Alignment explanation
Indices: 91717027--91717087 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
91717017 TCCTTAACTC
91717027 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
91717057 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
91717087 A
1 A
91717088 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:91727373 original size:52 final size:50
Alignment explanation
Indices: 91727281--91727410 Score: 161
Period size: 52 Copynumber: 2.6 Consensus size: 50
91727271 TGTGAGAACC
* * * **
91727281 CATGTGTAGTACTACGTGCAAGCTACTATGTGTTTAAAATGGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGG--TTAGGTCA
* * *
91727333 CGTGTGTAGTACTAAGTCCAGGCTACTACGTGTACCAAATGGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGGTTAGGTCA
*
91727383 CATGTGTAATACTAAGTGCAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
91727411 TACGTACCTG
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 33 0.49
52 34 0.51
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.32
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGGTTAGGTCA
Found at i:91727418 original size:50 final size:51
Alignment explanation
Indices: 91727325--91727507 Score: 154
Period size: 51 Copynumber: 3.6 Consensus size: 51
91727315 TAAAATGGTT
* * *** *
91727325 TTAGGTCACGTGTGTAGTACTAAGTCCAGGCTACTACGTGTACCAAAT-GG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATACGTACCAAATAGC
* **
91727375 TTAGGTCACATGTGTAATACTAAGTGCAGGCTACTATACGTACCTGATAGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATACGTACCAAATAGC
* * * * ** *
91727426 TTCGATCACATGTGTGGTACTAAGTGCAGGCCACTATGTGTA-AAAGATAGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATACGTACCAA-ATAGC
* * * * *
91727477 TTTGGTCACAAGTGTGGTACTATGTGAAGGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGC
91727508 CACTTTGTGA
Statistics
Matches: 107, Mismatches: 24, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
50 40 0.37
51 67 0.63
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (51 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATACGTACCAAATAGC
Found at i:91727539 original size:51 final size:51
Alignment explanation
Indices: 91727420--91727560 Score: 153
Period size: 51 Copynumber: 2.8 Consensus size: 51
91727410 ATACGTACCT
* * * *
91727420 GATAGCTTCGATCACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAA
1 GATAGCTTTGCTCACAAGTGTGGTACTATGTGCAGGCCACTATGTGTAAAA
* * *
91727471 GATAGCTTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTG-AAGAA
1 GATAGCTTTGCTCACAAGTGTGGTACTATGTGCAGGCCACTATGTGTAA-AA
* *
91727522 GGTAGCTTTGACT-ACAAG-GATGGTACCATGTGCAGGCCA
1 GATAGCTTTG-CTCACAAGTG-TGGTACTATGTGCAGGCCA
91727561 TCGGGCATCC
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
50 3 0.04
51 73 0.95
52 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (51 bp):
GATAGCTTTGCTCACAAGTGTGGTACTATGTGCAGGCCACTATGTGTAAAA
Found at i:91730278 original size:13 final size:13
Alignment explanation
Indices: 91730260--91730284 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91730250 GTAAAAATAC
91730260 ACACACAGAGTAT
1 ACACACAGAGTAT
91730273 ACACACAGAGTA
1 ACACACAGAGTA
91730285 AGCTATCTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.24, G:0.16, T:0.12
Consensus pattern (13 bp):
ACACACAGAGTAT
Found at i:91731308 original size:43 final size:44
Alignment explanation
Indices: 91731254--91731383 Score: 162
Period size: 43 Copynumber: 3.0 Consensus size: 44
91731244 ATATCGTACA
** *
91731254 ATGCCAATGTCCCAGACGTGGTCTTACAT-GTAATCACATGTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATCAAAATCACATATCG
*
91731297 ATGCCACTGTCCCAGACAG-GGTCTTAC-TCAAAATCACATATCG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATCAAAATCACATATCG
*
91731340 ATGCCAATGTCCCAGACGTGGTCTTACA-CGAGAA-CACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATC-AAAATCACATATCG
91731383 A
1 A
91731384 AAATCCTATG
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
42 2 0.03
43 70 0.92
44 4 0.05
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATCAAAATCACATATCG
Found at i:91737563 original size:2 final size:2
Alignment explanation
Indices: 91737556--91737585 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
91737546 TATATGAACG
91737556 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91737586 TGGATTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91740412 original size:52 final size:52
Alignment explanation
Indices: 91740328--91740432 Score: 140
Period size: 52 Copynumber: 2.0 Consensus size: 52
91740318 GAACCAAATT
* *
91740328 ACATGTATCGCATCCATTATGAACTCAGACCAACCCAATGACCTCGGATGCC
1 ACATGTATCGCATCCATTATGAACTCAGACCAACCCAACGACCTCAGATGCC
* * * *
91740380 ACATGTATGGCATTCATTATGAACTC-GAACCAACTCAACGAGCTCAGATGCC
1 ACATGTATCGCATCCATTATGAACTCAG-ACCAACCCAACGACCTCAGATGCC
91740432 A
1 A
91740433 TATGCATATC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
51 1 0.02
52 45 0.98
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (52 bp):
ACATGTATCGCATCCATTATGAACTCAGACCAACCCAACGACCTCAGATGCC
Found at i:91746022 original size:27 final size:27
Alignment explanation
Indices: 91745992--91746055 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
91745982 GTGACTATGT
* *
91745992 CACAGTCACTGATACTGGTTGCTGTGC
1 CACAATCACTGATACTGGTGGCTGTGC
* *
91746019 CACAATTACTGATACTGGTGGCTTTGC
1 CACAATCACTGATACTGGTGGCTGTGC
*
91746046 CACATTCACT
1 CACAATCACT
91746056 ATTTCTGGCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (27 bp):
CACAATCACTGATACTGGTGGCTGTGC
Found at i:91748268 original size:40 final size:38
Alignment explanation
Indices: 91748211--91748395 Score: 192
Period size: 40 Copynumber: 4.7 Consensus size: 38
91748201 TCGAATGATG
* * *
91748211 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACTA-A
91748251 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACT-AA
*
91748291 TCCGGATTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
* *
91748330 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTA-A
* * * *
91748370 ACCGGGCTATGTCTAGAAGGCATTTG
1 TCCGGACTAAGTC-CGAAGGCATTTG
91748396 AACGAATAGC
Statistics
Matches: 128, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
39 37 0.29
40 82 0.64
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:91748389 original size:79 final size:80
Alignment explanation
Indices: 91748211--91748395 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 80
91748201 TCGAATGATG
*
91748211 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCTAAGTGACTATATCCGGACTAAGACCCGAAGGCATT
91748275 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
** * * *
91748291 TCCGGATTAAGATCCGAAGGCATTTGTGC-GAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCTAAGTGACTATA-TCCGGACTAAGACCCGAAGGCAT
91748353 TTGTGCGAGTTACTATAA
64 TTGTGCGAGTTACTA-AA
* *
91748371 -CCGGGCTATGTCTAGAAGGCATTTG
1 TCCGGGCTAAGTC-CGAAGGCATTTG
91748396 AACGAATAGC
Statistics
Matches: 90, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
78 2 0.02
79 44 0.49
80 36 0.40
81 8 0.09
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACTATATCCGGACTAAGACCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:91748414 original size:79 final size:80
Alignment explanation
Indices: 91748245--91748414 Score: 188
Period size: 79 Copynumber: 2.1 Consensus size: 80
91748235 GTGCTAAGTG
* * *
91748245 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGATTAAGATCCGAAG
1 ACTATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCAGAAG
** *
91748310 GCATTTGTGCGAGTT
66 GCATTTGAACGAGAT
* * *
91748325 ACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCTAG
1 ACTATA-TCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGATC-AG
91748386 AAGGCATTTGAACGA-AT
63 AAGGCATTTGAACGAGAT
91748403 AGCTATATCCGG
1 A-CTATATCCGG
91748415 TTAAATTCCG
Statistics
Matches: 76, Mismatches: 9, Indels: 11
0.79 0.09 0.11
Matches are distributed among these distances:
78 4 0.05
79 55 0.72
80 17 0.22
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (80 bp):
ACTATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCAGAAG
GCATTTGAACGAGAT
Found at i:91753610 original size:27 final size:27
Alignment explanation
Indices: 91753578--91753722 Score: 157
Period size: 27 Copynumber: 5.4 Consensus size: 27
91753568 GATGGAACTA
**
91753578 ACCGTAACACCCCTGTAGGGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
* *
91753605 ACCGTAATGTCGCC-GTAGAGTAAAATG
1 ACCGTAATG-CCCCTGTAGGGTAAAATG
**
91753632 ACCGTAATGCCCCCATAGGGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
* *
91753659 ATCGTAATGCCCCTGTACGGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
*** *
91753686 ATTTTAATGCCCTTGTAGGGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
*
91753713 ACTGTAATGC
1 ACCGTAATGC
91753723 GCTTATGTGC
Statistics
Matches: 99, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
26 3 0.03
27 93 0.94
28 3 0.03
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (27 bp):
ACCGTAATGCCCCTGTAGGGTAAAATG
Found at i:91753901 original size:27 final size:27
Alignment explanation
Indices: 91753871--91753934 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
91753861 GTGACTATGT
91753871 CACATTCACTGATACTGGTGGCGATGC
1 CACATTCACTGATACTGGTGGCGATGC
* **
91753898 CACAATT-ATTGATACTGGTGGCTTTGC
1 CAC-ATTCACTGATACTGGTGGCGATGC
91753925 CACATTCACT
1 CACATTCACT
91753935 ATTTCTGGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
26 3 0.10
27 25 0.81
28 3 0.10
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.31
Consensus pattern (27 bp):
CACATTCACTGATACTGGTGGCGATGC
Found at i:91754124 original size:28 final size:27
Alignment explanation
Indices: 91754092--91754157 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
91754082 CATTACACTG
* * *
91754092 TACTGATACTGTATTGGGCTTAGGCCCA
1 TACTG-TACTGTATAGGGCTAAAGCCCA
*
91754120 TACTGTTTCTGTATAGGGCTAAAGCCCA
1 TACTG-TACTGTATAGGGCTAAAGCCCA
*
91754148 GACTGTACTG
1 TACTGTACTG
91754158 GTACTGAATA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (27 bp):
TACTGTACTGTATAGGGCTAAAGCCCA
Found at i:91756174 original size:50 final size:50
Alignment explanation
Indices: 91756115--91756224 Score: 152
Period size: 50 Copynumber: 2.2 Consensus size: 50
91756105 TATATGTCAA
* * *
91756115 CTCATAAGAGCTTACTGTTC-TCAGCTCAA-TAGAGCTTACTGTCCATCAG
1 CTCAAAAGAGCTTACTGTCCATCAGCTCAAGAAGAGCTTACTGTCCAT-AG
*
91756164 CTCAAGAAGAGCTTACTGTCCATCAGCTCAAGAAGAGCTTACTGTTCATAG
1 CTCAA-AAGAGCTTACTGTCCATCAGCTCAAGAAGAGCTTACTGTCCATAG
91756215 CTCAAAAGAG
1 CTCAAAAGAG
91756225 AGGAAAATGA
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
49 4 0.07
50 19 0.35
51 16 0.30
52 15 0.28
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
CTCAAAAGAGCTTACTGTCCATCAGCTCAAGAAGAGCTTACTGTCCATAG
Found at i:91756180 original size:26 final size:25
Alignment explanation
Indices: 91756115--91756224 Score: 152
Period size: 26 Copynumber: 4.4 Consensus size: 25
91756105 TATATGTCAA
* *
91756115 CTCATAAGAGCTTACTGTTC-TCAG
1 CTCAAAAGAGCTTACTGTCCATCAG
*
91756139 CTCAATAGAGCTTACTGTCCATCAG
1 CTCAAAAGAGCTTACTGTCCATCAG
91756164 CTCAAGAAGAGCTTACTGTCCATCAG
1 CTCAA-AAGAGCTTACTGTCCATCAG
*
91756190 CTCAAGAAGAGCTTACTGTTCAT-AG
1 CTCAA-AAGAGCTTACTGTCCATCAG
91756215 CTCAAAAGAG
1 CTCAAAAGAG
91756225 AGGAAAATGA
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
24 22 0.28
25 16 0.20
26 41 0.52
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (25 bp):
CTCAAAAGAGCTTACTGTCCATCAG
Found at i:91764250 original size:44 final size:44
Alignment explanation
Indices: 91764195--91764357 Score: 165
Period size: 43 Copynumber: 3.8 Consensus size: 44
91764185 CCGATATGTA
91764195 TTATCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT-TTGTGAT
1 TTAT-GTGTAAGACCATGTCTGGGACGTTGGCATCGATATT-TGAT
* * *
91764240 TTATGTGTAAGACCATGTCTGGGACATCGGCATCG-TATTTGCT
1 TTATGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGAT
* * *
91764283 TT-TGTGTAAGTCCCTGTCTGGGATAG-TGGCATCGATATTTGA-
1 TTATGTGTAAGACCATGTCTGGGA-CGTTGGCATCGATATTTGAT
** * **
91764325 TTACATGAAAGACCGCGTCTGGGACGTTGGCAT
1 TTATGTGTAAGACCATGTCTGGGACGTTGGCAT
91764358 TGTACTAGCT
Statistics
Matches: 97, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
42 29 0.30
43 33 0.34
44 31 0.32
45 4 0.04
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (44 bp):
TTATGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGAT
Found at i:91764302 original size:42 final size:42
Alignment explanation
Indices: 91764195--91764326 Score: 142
Period size: 44 Copynumber: 3.0 Consensus size: 42
91764185 CCGATATGTA
*
91764195 TTATCGTGTAAGACCATGTCTGGGACGTTGGCATCG-ATTTGTGAT
1 TTAT-GTGTAAGACCATGTCTGGGAC-ATGGCATCGTA-TT-TGAT
*
91764240 TTATGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGCT
1 TTATGTGTAAGACCATGTCTGGGACAT-GGCATCGTATTTGAT
* * *
91764283 TT-TGTGTAAGTCCCTGTCTGGGATAGTGGCATCGATATTTGAT
1 TTATGTGTAAGACCATGTCTGGGACA-TGGCATCG-TATTTGAT
91764326 T
1 T
91764327 ACATGAAAGA
Statistics
Matches: 77, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
42 27 0.35
43 15 0.19
44 30 0.39
45 5 0.06
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.37
Consensus pattern (42 bp):
TTATGTGTAAGACCATGTCTGGGACATGGCATCGTATTTGAT
Found at i:91766000 original size:29 final size:29
Alignment explanation
Indices: 91765958--91766025 Score: 127
Period size: 29 Copynumber: 2.3 Consensus size: 29
91765948 ACCACGGCCT
*
91765958 AGGCACACGGGTGTGTCGAATGCCGTGTG
1 AGGCACACGGGTGTGTCGAATGCCCTGTG
91765987 AGGCACACGGGTGTGTCGAATGCCCTGTG
1 AGGCACACGGGTGTGTCGAATGCCCTGTG
91766016 AGGCACACGG
1 AGGCACACGG
91766026 TCTGCTCACA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.19, C:0.24, G:0.40, T:0.18
Consensus pattern (29 bp):
AGGCACACGGGTGTGTCGAATGCCCTGTG
Found at i:91766682 original size:24 final size:26
Alignment explanation
Indices: 91766650--91766698 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
91766640 TAGAACATCG
91766650 TGTTCC-TTTCAA-TAAAAATTTATT
1 TGTTCCTTTTCAATTAAAAATTTATT
*
91766674 TGTTCCTTTTTAATTAAAAATTTAT
1 TGTTCCTTTTCAATTAAAAATTTAT
91766699 AGTGGCTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 5 0.23
26 11 0.50
ACGTcount: A:0.33, C:0.10, G:0.04, T:0.53
Consensus pattern (26 bp):
TGTTCCTTTTCAATTAAAAATTTATT
Found at i:91768283 original size:18 final size:18
Alignment explanation
Indices: 91768260--91768299 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
91768250 TTTAATGGTC
91768260 GTGGAAGGCTCGATTGTG
1 GTGGAAGGCTCGATTGTG
* *
91768278 GTGGAATGCTCGGTTGTG
1 GTGGAAGGCTCGATTGTG
91768296 GTGG
1 GTGG
91768300 TTAGAGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.12, C:0.10, G:0.47, T:0.30
Consensus pattern (18 bp):
GTGGAAGGCTCGATTGTG
Found at i:91770025 original size:29 final size:27
Alignment explanation
Indices: 91769978--91770089 Score: 89
Period size: 29 Copynumber: 4.0 Consensus size: 27
91769968 TGAGTATAAT
* *
91769978 ATGATTTGGGTCTAATGGGCCATATGA
1 ATGAATTGGGCCTAATGGGCCATATGA
* *
91770005 AGGTGAATTGGGCCTAGTGGGCCATAAGAA
1 A--TGAATTGGGCCTAATGGGCCATATG-A
* * * *
91770035 TATGAACTGGGCCAAACGGGCCATTTGA
1 -ATGAATTGGGCCTAATGGGCCATATGA
* *
91770063 ATAAGATTGGGCCTAGTGGGCCATATG
1 ATGA-ATTGGGCCTAATGGGCCATATG
91770090 CGTATATGTA
Statistics
Matches: 64, Mismatches: 16, Indels: 9
0.72 0.18 0.10
Matches are distributed among these distances:
27 4 0.06
28 18 0.28
29 40 0.62
30 1 0.02
31 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (27 bp):
ATGAATTGGGCCTAATGGGCCATATGA
Found at i:91774426 original size:13 final size:12
Alignment explanation
Indices: 91774403--91774437 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
91774393 TTTCATCTAT
91774403 CATTCCCTTTTC
1 CATTCCCTTTTC
91774415 CATTCTCCTTTTC
1 CATTC-CCTTTTC
*
91774428 CTTTCCCTTT
1 CATTCCCTTT
91774438 GCATAACCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.06, C:0.40, G:0.00, T:0.54
Consensus pattern (12 bp):
CATTCCCTTTTC
Found at i:91777493 original size:49 final size:50
Alignment explanation
Indices: 91777427--91777656 Score: 275
Period size: 49 Copynumber: 4.6 Consensus size: 50
91777417 TATTGTGAGG
* * * *
91777427 TCACTTGTGTAGTACTAAGTGCAAGCTACTACGTGTACTGGATTATT-GA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGA
* ** * * *
91777476 TCGCATGTGTAGTACTAAGTGCAGGCTACTGTGCGTACCCGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TTAGA
* * * ** *
91777527 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGA
*
91777577 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGA
*
91777626 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
91777657 TGCGTACCAG
Statistics
Matches: 153, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 68 0.44
50 47 0.31
51 38 0.25
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGA
Found at i:91777615 original size:101 final size:98
Alignment explanation
Indices: 91777427--91777656 Score: 291
Period size: 100 Copynumber: 2.3 Consensus size: 98
91777417 TATTGTGAGG
* * * * *
91777427 TCACTTGTGTAGTACTAAGTGCAAGCTACTACGTGTACTGGATTATTGATCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGATTGATCACATGTGTAGTACT
**
91777492 AAGTGCAGGCTACTGTGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCCGATAA-TT-GA
* * *
91777527 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAGGTCACATGTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATGATT-GATCACATGTGTAGTA
* * *
91777591 CTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
64 CTAAGTGCAGGCTACTACGCGTACCCGATAATTGA
*
91777626 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
91777657 TGCGTACCAG
Statistics
Matches: 114, Mismatches: 14, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
99 31 0.27
100 42 0.37
101 41 0.36
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (98 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGATTGATCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCCGATAATTGA
Found at i:91782823 original size:2 final size:2
Alignment explanation
Indices: 91782816--91782841 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
91782806 GCTCTTGCAC
91782816 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
91782842 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91783646 original size:40 final size:40
Alignment explanation
Indices: 91783545--91783799 Score: 371
Period size: 40 Copynumber: 6.5 Consensus size: 40
91783535 TGGATGATAA
* * *
91783545 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
91783585 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
91783624 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
91783664 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
*
91783704 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
91783744 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
91783783 CC-GGCTAA-ACCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
91783800 TACTTGGTTG
Statistics
Matches: 201, Mismatches: 9, Indels: 13
0.90 0.04 0.06
Matches are distributed among these distances:
37 8 0.04
38 9 0.04
39 45 0.22
40 137 0.68
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:91793351 original size:40 final size:39
Alignment explanation
Indices: 91793265--91793448 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 39
91793255 AAATTGAATG
* * * * *
91793265 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA-AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGT
* * *
91793305 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-T
* *
91793345 ATATCCGGGCCAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAG-T
* * * *
91793385 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
* * *
91793424 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
91793449 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 108 0.93
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
Found at i:91801484 original size:40 final size:40
Alignment explanation
Indices: 91801382--91801565 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
91801372 AAATTGAATG
* * * * *
91801382 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
91801422 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
91801462 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
91801502 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
91801542 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
91801566 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:91805345 original size:29 final size:27
Alignment explanation
Indices: 91805311--91805413 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
91805301 TACTCAATCA
*
91805311 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
91805340 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
91805369 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
91805398 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
91805414 ATCTCTCACC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:91813551 original size:38 final size:39
Alignment explanation
Indices: 91813459--91813620 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
91813449 TGTGTATGAA
*
91813459 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
91813498 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
91813536 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
91813575 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
91813615 TGTGCG
1 TGTGCG
91813621 GGTTACCATA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 36 0.32
39 61 0.54
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:91813636 original size:40 final size:39
Alignment explanation
Indices: 91813459--91813650 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
91813449 TGTGTATGAA
* *
91813459 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
91813498 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
91813536 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
91813575 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
91813615 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
91813651 TGTTTTGAAC
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 36 0.26
39 61 0.45
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:91821659 original size:38 final size:39
Alignment explanation
Indices: 91821567--91821728 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
91821557 TGTGTATGAA
*
91821567 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
91821606 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
91821644 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
91821683 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
91821723 TGTGCG
1 TGTGCG
91821729 GGTTACCATA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 36 0.32
39 61 0.54
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:91824557 original size:29 final size:27
Alignment explanation
Indices: 91824523--91824625 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
91824513 TACTCAATCA
*
91824523 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
91824552 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
91824581 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
91824610 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
91824626 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:91836296 original size:74 final size:74
Alignment explanation
Indices: 91836102--91836656 Score: 689
Period size: 74 Copynumber: 7.5 Consensus size: 74
91836092 TTCCGTTTTC
* * *
91836102 AAAATTCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTC
*
91836167 TATTTTTAAA
66 TA-TTTTCAA
* *
91836177 AAAAATCAACTCATATTGCGATAAATGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTC
91836242 TATTTTCAA
66 TATTTTCAA
91836251 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTC
91836316 TATTTTCAA
66 TATTTTCAA
** * *
91836325 AAAAATCAACTCATATTGCGAGAGGTGAGTTGA---TCGGGACACACTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTC
91836387 TATTTTCAA
66 TATTTTCAA
** * *
91836396 AAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTC
*
91836461 TGTTTTC--
66 TATTTTCAA
* *
91836468 -AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTT-AATTT
91836531 CTATTTTCAAAAAAA
65 CTATTTTC-----AA
* *** * * *
91836546 AAAAATCAACTCATATTACGAGAGGCGAGTTGAGCCTCAAGACATGCTGAGGT-ATTGTCAATTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TTAA---
*
91836610 TTTGTATGTTTC--
62 TTTCTAT-TTTCAA
**
91836622 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
91836657 TCAAGATCAC
Statistics
Matches: 431, Mismatches: 32, Indels: 33
0.87 0.06 0.07
Matches are distributed among these distances:
70 5 0.01
71 126 0.29
74 143 0.33
75 62 0.14
76 33 0.08
79 51 0.12
80 1 0.00
82 6 0.01
83 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTC
TATTTTCAA
Found at i:91836429 original size:145 final size:144
Alignment explanation
Indices: 91836102--91836659 Score: 665
Period size: 145 Copynumber: 3.8 Consensus size: 144
91836092 TTCCGTTTTC
* *
91836102 AAAATTCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* *
91836167 TATTTTTAAAAAAAATCAACTCATATTGCGATAAATGAGTTGAGCCTCAGGACACGTTGAGGTAA
66 TA-TTTT--CAAAAATCAACTCATATTGCGAGAAATGAGTTGA--CTCAGGACACGTTGAGGTAA
91836232 TTTTAATTTCTATTTTCAA
126 TTTTAATTTCTATTTTCAA
*
91836251 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
** * **
91836316 TATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA-TCGGGACACACTGAGGTAATTT
66 TATTTTC--AAAAATCAACTCATATTGCGAGAAATGAGTTGACTCAGGACACGTTGAGGTAATTT
91836380 TAATTTCTATTTTCAA
129 TAATTTCTATTTTCAA
** * * *
91836396 AAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* *
91836461 TGTTTTC-AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTT
66 TATTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGA--CTCAGGACACGTTGAGGTAATTT
91836524 TCAATTTCTATTTTCAAAAAAA
129 T-AATTTCTATTTTC-----AA
* *** * *
91836546 AAAAATCAACTCATATTACGAGAGGCGAGTTGAGCCTCAAGACATGCTGAGGT-ATTGTCAATTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAA---
* **
91836610 TTTGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTCA
62 TTTCTAT-TTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGA-CTCA
91836660 AGATCACATA
Statistics
Matches: 359, Mismatches: 33, Indels: 29
0.85 0.08 0.07
Matches are distributed among these distances:
142 30 0.08
144 5 0.01
145 128 0.36
148 34 0.09
149 67 0.19
150 52 0.14
153 5 0.01
154 8 0.02
155 30 0.08
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.32
Consensus pattern (144 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TATTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGACTCAGGACACGTTGAGGTAATTTTA
ATTTCTATTTTCAA
Found at i:91837286 original size:35 final size:34
Alignment explanation
Indices: 91837247--91837328 Score: 119
Period size: 35 Copynumber: 2.4 Consensus size: 34
91837237 ACTTGCCTCT
*
91837247 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAACACCA
*
91837281 CTCCCATTCTCCCATGCTGTCTGCCACCAACACCA
1 -TCCCACTCTCCCATGCTGTCTGCCACCAACACCA
* *
91837316 TCACACACTCCCA
1 TCCCACTCTCCCA
91837329 CTGCACCTGC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
34 10 0.24
35 32 0.76
ACGTcount: A:0.21, C:0.50, G:0.09, T:0.21
Consensus pattern (34 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAACACCA
Found at i:91837705 original size:23 final size:24
Alignment explanation
Indices: 91837688--91837749 Score: 92
Period size: 23 Copynumber: 2.7 Consensus size: 24
91837678 TATATATATT
91837688 AAAACATA-AAAAAAATATACAAA
1 AAAACATACAAAAAAATATACAAA
*
91837711 AAAATATACAAAAAAATATAC-AA
1 AAAACATACAAAAAAATATACAAA
*
91837734 AAAATATACAAAAAAA
1 AAAACATACAAAAAAA
91837750 AAAAATTTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
23 25 0.68
24 12 0.32
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (24 bp):
AAAACATACAAAAAAATATACAAA
Found at i:91837713 original size:12 final size:12
Alignment explanation
Indices: 91837696--91837749 Score: 101
Period size: 12 Copynumber: 4.6 Consensus size: 12
91837686 TTAAAACATA
91837696 AAAAAAATATAC
1 AAAAAAATATAC
91837708 AAAAAAATATAC
1 AAAAAAATATAC
91837720 AAAAAAATATAC
1 AAAAAAATATAC
91837732 -AAAAAATATAC
1 AAAAAAATATAC
91837743 AAAAAAA
1 AAAAAAA
91837750 AAAAATTTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.27
12 30 0.73
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAAAATATAC
Found at i:91837854 original size:11 final size:11
Alignment explanation
Indices: 91837838--91837872 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
91837828 CCGGATTCCC
91837838 CTCCCTTCTCT
1 CTCCCTTCTCT
91837849 CTCCCTTCTCT
1 CTCCCTTCTCT
91837860 CTTCCC-TCTCT
1 C-TCCCTTCTCT
91837871 CT
1 CT
91837873 TCTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:91838324 original size:3 final size:3
Alignment explanation
Indices: 91838318--91838369 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
91838308 TGCATTTCAA
*
91838318 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
91838366 TAT T
1 TAT T
91838370 GAAATACATT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:91838483 original size:3 final size:3
Alignment explanation
Indices: 91838475--91838517 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
91838465 TGTGTTTCAA
*
91838475 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
91838518 GAAATACATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:91838629 original size:3 final size:3
Alignment explanation
Indices: 91838621--91838695 Score: 150
Period size: 3 Copynumber: 25.0 Consensus size: 3
91838611 TGTGTTTCAA
91838621 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
91838669 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
91838696 CCTTGTTAGG
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:91838638 original size:146 final size:148
Alignment explanation
Indices: 91838327--91838663 Score: 633
Period size: 146 Copynumber: 2.3 Consensus size: 148
91838317 ATATTATTAT
91838327 TATTATTATTATTATTATTATTATTATTATTATTATTGTTATTGAAATACATTAGTGTATATCTT
1 TATTATTATTATTATTATTATTATTATTATTATTATTGTTATTGAAATACATTAGTGTATATCTT
*
91838392 CATGTATGTATATATATATATATGTAGTAATGTTTCTATTACTTTATTTTAATATTTTTATTATA
66 CATGTATGTATACATATATATATGTAGTAATGTTTCTATTACTTTATTTTAATATTTTTATTATA
91838457 ATGACTTTTGTGTTTCAA
131 ATGACTTTTGTGTTTCAA
91838475 TATTATTATTATTATTATTATTATTATTATTATTATTGTTATTGAAATACATTAGTGTATATCTT
1 TATTATTATTATTATTATTATTATTATTATTATTATTGTTATTGAAATACATTAGTGTATATCTT
91838540 CATGTATGTATACA-A-ATATATGTAGTAATGTTTCTATTACTTTATTTTAATATTTTTATTATA
66 CATGTATGTATACATATATATATGTAGTAATGTTTCTATTACTTTATTTTAATATTTTTATTATA
*
91838603 ATGGCTTTTGTGTTTCAA
131 ATGACTTTTGTGTTTCAA
*
91838621 TATTATTATTATTATTATTATTATTATTATTATTATTATTATT
1 TATTATTATTATTATTATTATTATTATTATTATTATTGTTATT
91838664 ATTATTATTA
Statistics
Matches: 186, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
146 107 0.58
147 1 0.01
148 78 0.42
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.57
Consensus pattern (148 bp):
TATTATTATTATTATTATTATTATTATTATTATTATTGTTATTGAAATACATTAGTGTATATCTT
CATGTATGTATACATATATATATGTAGTAATGTTTCTATTACTTTATTTTAATATTTTTATTATA
ATGACTTTTGTGTTTCAA
Found at i:91838965 original size:33 final size:30
Alignment explanation
Indices: 91838907--91838976 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 30
91838897 TAATATTATG
*
91838907 TATATATTTTAATATTATCAGTTATATATA
1 TATATATTTTAATACTATCAGTTATATATA
* *
91838937 CTATATGATTTCTAATACTATTATTTATATATA
1 -TATAT-ATTT-TAATACTATCAGTTATATATA
91838970 TATATAT
1 TATATAT
91838977 ATATATATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 7 0.21
32 9 0.26
33 18 0.53
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.53
Consensus pattern (30 bp):
TATATATTTTAATACTATCAGTTATATATA
Found at i:91838969 original size:2 final size:2
Alignment explanation
Indices: 91838962--91838992 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
91838952 TACTATTATT
91838962 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91838993 TCTTAGTACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91845779 original size:41 final size:41
Alignment explanation
Indices: 91845734--91845901 Score: 137
Period size: 41 Copynumber: 4.1 Consensus size: 41
91845724 CCTTCGGAAT
* * *
91845734 CAAGCCCGATTCTTAGTACTGGCTCAAAAGCCCTTCGAGAC
1 CAAGCCCGATTATGAGCACTGGCTCAAAAGCCCTTCGAGAC
* * *
91845775 CAAGCTCGGATTA-GACCACTGGCTCAAAGGCCCTTC-AGAAC
1 CAAGC-CCGATTATGAGCACTGGCTCAAAAGCCCTTCGAG-AC
* * * * * *
91845816 TAAGTCCGGTTATGA-CACTGGCTCTAAATCCCTTCGAAAC
1 CAAGCCCGATTATGAGCACTGGCTCAAAAGCCCTTCGAGAC
* ** *
91845856 TAAGTTC-AGTTATTAGCACTGGCTCAAAAGCCCTTCGAGAC
1 CAAGCCCGA-TTATGAGCACTGGCTCAAAAGCCCTTCGAGAC
91845897 CAAGC
1 CAAGC
91845902 TCAGATTTAG
Statistics
Matches: 99, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
40 37 0.37
41 57 0.58
42 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (41 bp):
CAAGCCCGATTATGAGCACTGGCTCAAAAGCCCTTCGAGAC
Found at i:91848494 original size:48 final size:48
Alignment explanation
Indices: 91848436--91848948 Score: 954
Period size: 48 Copynumber: 10.7 Consensus size: 48
91848426 TGTTACAACA
91848436 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
91848484 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
91848532 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
91848580 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
91848628 TTCACATTAGCCATTCGGCTTTACCACATATACCTATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
91848676 TTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCAGATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
91848724 TTCACATTAGCCATTCGGCTTTACCACATATACGTATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
91848772 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
91848820 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
91848868 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
91848916 TTCACATTAGCCATTCAGCTTTACCACATATAC
1 TTCACATTAGCCATTCGGCTTTACCACATATAC
91848949 TTTCACGTAT
Statistics
Matches: 454, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 454 1.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:91855474 original size:18 final size:19
Alignment explanation
Indices: 91855451--91855495 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
91855441 AAAAGCCAAT
91855451 TTGAAAAGATG-ATTTGGC
1 TTGAAAAGATGTATTTGGC
* *
91855469 TTGAAAATATGTTTTTGGC
1 TTGAAAAGATGTATTTGGC
*
91855488 TTCAAAAG
1 TTGAAAAG
91855496 CACTTTTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (19 bp):
TTGAAAAGATGTATTTGGC
Found at i:91855975 original size:19 final size:17
Alignment explanation
Indices: 91855947--91855990 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
91855937 TCGAGTCACG
*
91855947 AATTAGTAGTGTTAATACA
1 AATTAATAGT-TTAAT-CA
*
91855966 AATTAATAGTTTAATTA
1 AATTAATAGTTTAATCA
91855983 AATTAATA
1 AATTAATA
91855991 AACCTAGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 9 0.39
18 5 0.22
19 9 0.39
ACGTcount: A:0.48, C:0.02, G:0.09, T:0.41
Consensus pattern (17 bp):
AATTAATAGTTTAATCA
Found at i:91858734 original size:19 final size:19
Alignment explanation
Indices: 91858689--91858740 Score: 97
Period size: 18 Copynumber: 2.8 Consensus size: 19
91858679 ATCTTCAATA
91858689 ATATGCAATCTTAGATATG
1 ATATGCAATCTTAGATATG
91858708 AT-TGCAATCTTAGATATG
1 ATATGCAATCTTAGATATG
91858726 ATATGCAATCTTAGA
1 ATATGCAATCTTAGA
91858741 AGATATGATT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
18 18 0.56
19 14 0.44
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (19 bp):
ATATGCAATCTTAGATATG
Done.