Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 303 of 770
Found at i:92573694 original size:218 final size:217
Alignment explanation
Indices: 92573461--92573884 Score: 733
Period size: 218 Copynumber: 1.9 Consensus size: 217
92573451 AAATTGAAAA
*
92573461 CAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCA-CCTCTCACAATATGAGCTGATT
1 CAGAAATTGAAAATACCTCAGCATGACCTGAGGCTCAACT-AGCCTCTCACAATATGAGCTGATT
*
92573525 TTGAAAAAGTAGAAACTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACA
65 TTGAAAAAGTAGAAACTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACA
92573590 TAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
130 TAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
*
92573655 TGAGTTGATTTTTTTTTGAAAGG
195 TGAGCTGATTTTTTTTTGAAAGG
* * ** *
92573678 CAGAAATTGAAAAATACCTCAGCATGTCTTGAGGCTCAACTAGTTTCTCGCAATATGAGCTGATT
1 CAGAAATTG-AAAATACCTCAGCATGACCTGAGGCTCAACTAGCCTCTCACAATATGAGCTGATT
* *
92573743 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAGCA
65 TTGAAAAAGTAGAAACTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACA
92573808 TAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
130 TAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
92573873 TGAGCTGATTTT
195 TGAGCTGATTTT
92573885 GAAAAAGTAG
Statistics
Matches: 195, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
217 10 0.05
218 185 0.95
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (217 bp):
CAGAAATTGAAAATACCTCAGCATGACCTGAGGCTCAACTAGCCTCTCACAATATGAGCTGATTT
TGAAAAAGTAGAAACTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACAT
AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
GAGCTGATTTTTTTTTGAAAGG
Found at i:92573729 original size:78 final size:77
Alignment explanation
Indices: 92573601--92573744 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 77
92573591 AAATTGAAAA
* *
92573601 CAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
92573666 TTTTTTGAAAGG
66 TTTTTTGAAAGG
* * **
92573678 CAGAAATTGAAAAATACCTCAGCATGTCTTGAGGCTCAACT-AGTTTCTCGCAATATGAGCTGAT
1 CAGAAATTG-AAAATACCTCAGCATGACCTGAGGCTCAACTCA-CCTCTCGCAATATGAGCTGAT
92573742 TTT
64 TTT
92573745 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
77 10 0.17
78 49 0.83
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Consensus pattern (77 bp):
CAGAAATTGAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
TTTTTTGAAAGG
Found at i:92573879 original size:140 final size:141
Alignment explanation
Indices: 92573678--92573936 Score: 432
Period size: 140 Copynumber: 1.8 Consensus size: 141
92573668 TTTTGAAAGG
* * **
92573678 CAGAAATTGAAAAATACCTCAGCATGTCTTGAGGCTCAACTAGTTTCTCGCAATATGAGCTGATT
1 CAGAAATTGAAAAATACCTCAGCATGACCTGAGGCTCAACTAGCCTCTCGCAATATGAGCTGATT
*
92573743 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAGCA
66 TTGAAAAAGTAGAAACTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAGCA
92573808 TAAATTGAAAA
131 TAAATTGAAAA
*
92573819 CAGAAATTG-AAAATACCTCAGCGTGACCTGAGGCTCAACTCA-CCTCTCGCAATATGAGCTGAT
1 CAGAAATTGAAAAATACCTCAGCATGACCTGAGGCTCAACT-AGCCTCTCGCAATATGAGCTGAT
*
92573882 TTTGAAAAAGTAGAAACTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATT
65 TTTGAAAAAGTAGAAACTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT
92573937 TATTTTTTTG
Statistics
Matches: 110, Mismatches: 7, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
140 100 0.91
141 10 0.09
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (141 bp):
CAGAAATTGAAAAATACCTCAGCATGACCTGAGGCTCAACTAGCCTCTCGCAATATGAGCTGATT
TTGAAAAAGTAGAAACTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAGCA
TAAATTGAAAA
Found at i:92573930 original size:358 final size:354
Alignment explanation
Indices: 92573233--92574098 Score: 1341
Period size: 358 Copynumber: 2.4 Consensus size: 354
92573223 AGTTGATCTT
* *
92573233 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAA-ACAGAAATTGAAAATACCTCA--GCGTGA-CCGAGGCTCAACTCACCTCTCGCAATAT
92573298 GAGTTGATTTTTTTTTGAAAGGCAGAAATTGGAAAATACCTCAGCATGTCTTGAGGCTCAACTAG
62 GAGTTGATTTTTTTTTGAAAGGCAGAAATT-GAAAATACCTCAGCATGTCTTGAGGCTCAACTAG
92573363 TTTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAAT
126 TTTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAAT
92573428 ATGAGTTGATTCTTGAACAGCATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAG
191 ATGAGTTGATTCTTGAACAGCATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAG
92573493 GCTCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAGAAACTAAAAGGTTCAACCCAC
256 GCTCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAGAAACTAAAAGGTTCAACCCAC
92573558 TTCTCGCAATATGAGTTGATTCTTGAACAACAT-AAA
321 TTCTCGCAATATGAGTTGA-T-TT-AACAACATGAAA
92573594 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACC-GAGGCTCAACTCACCTCTCGCAATATGAG
92573659 TTGATTTTTTTTTGAAAGGCAGAAATTGAAAAATACCTCAGCATGTCTTGAGGCTCAACTAGTTT
65 TTGATTTTTTTTTGAAAGGCAGAAATTG-AAAATACCTCAGCATGTCTTGAGGCTCAACTAGTTT
92573724 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
129 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
92573789 AGTTGATTCTTGAACAGCATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
194 AGTTGATTCTTGAACAGCATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
*
92573854 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAACTAAAAGGTTCAACCCACTTC
259 CAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAGAAACTAAAAGGTTCAACCCACTTC
******
92573919 TCGCAATATGAGTTGATTTATTTTTTTGAAA
324 TCGCAATATGAGTTGATTTAACAACATGAAA
* * * * * *
92573950 TT-AAAACAAAAAAATCGACAATTCCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATG
1 TTGAAAAC--AGAAATTGAAAATACCTCAGCGTG-ACCGAGGCTCAACTCACCTCTCGCAATATG
* ** * * *
92574014 TGTTGA----TTTTTGAAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCA-C
63 AGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACT-AGT
* * *
92574074 CTCTCACAATATGAGTTGATTTTGA
127 TTCTCGCAATATGAGCTGATTTTGA
92574099 CAAACAGAAA
Statistics
Matches: 474, Mismatches: 24, Indels: 23
0.91 0.05 0.04
Matches are distributed among these distances:
352 51 0.11
353 19 0.04
355 7 0.01
356 7 0.01
357 55 0.12
358 309 0.65
360 20 0.04
361 6 0.01
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (354 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTTTGAAAGGCAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAGTTTCT
CGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAG
TTGATTCTTGAACAGCATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA
ACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAGAAACTAAAAGGTTCAACCCACTTCTC
GCAATATGAGTTGATTTAACAACATGAAA
Found at i:92574025 original size:140 final size:138
Alignment explanation
Indices: 92573688--92574030 Score: 395
Period size: 140 Copynumber: 2.5 Consensus size: 138
92573678 CAGAAATTGA
* * ** **
92573688 AAAATACCTCAGCATGTCTTGAGGCTCAACT-AGTTTCTCGCAATATGAGCTGATTTTGAAAAAG
1 AAAATACCTCAGCGTGACCCGAGGCTCAACTCA-CCTCTCGCAATATGAGCTGATTTTGAAAAAG
* *
92573752 TAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAGCATAAATTGAA
65 TAGAAACTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTATTGAACAG-A-AAATTGAA
* *
92573817 AACAGAAATTG
128 AACAAAAATCG
*
92573828 AAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGT
1 AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGT
* *****
92573893 AGAAACTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTTATTTTTTTG-AAATT-AAAA
66 AGAAACTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA-TTATTGAACAGAAAATTGAAAA
92573956 CAAAAAAATCG
130 C--AAAAATCG
* * * * * *
92573967 ACAATTCCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGTGTTGATTTTTGAAAAA
1 AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTGAAAAA
92574031 CAGAAATTGA
Statistics
Matches: 176, Mismatches: 22, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
137 5 0.03
138 5 0.03
139 52 0.30
140 108 0.61
141 6 0.03
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (138 bp):
AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGT
AGAAACTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTATTGAACAGAAAATTGAAAAC
AAAAATCG
Found at i:92574066 original size:73 final size:73
Alignment explanation
Indices: 92573969--92574565 Score: 375
Period size: 73 Copynumber: 7.8 Consensus size: 73
92573959 AAAAATCGAC
* * * *
92573969 AATT-CCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGTGTTGATTTTTGAAAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
92574033 GAAATTGA
66 GAAATTGA
* *
92574041 AATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTGACAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG----A-A
92574105 GAAACAGAAATTGA
61 -AAACAGAAATTGA
* ** * * *
92574119 AAATACCTCAGCACGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGAATTGATTTTTTTTTTG
1 AATTACCTCAGCA--TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTG
* * *
92574184 -ACAATAGAAATTGC
59 AAAAACAGAAATTGA
* *
92574198 CATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
*
92574263 TAAATTGA
66 GAAATTGA
* *** * * * *
92574271 AA-CACAAAAATTGACAAT-ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AATTAC-CTCA--G-C-ATGTCC-C-GAG-G-CTC-A---AC---TCACCTCTCGCAATATGAGT
*
92574334 TGATTTTTG-AAAACAGAAATTTAA
50 TGATTTTTGAAAAACAGAAA-TTGA
* * *
92574358 AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA-ATGAGTTGA-TTTTGACAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG----A-A
*
92574421 GAAATAGAAATTGA
61 -AAACAGAAATTGA
* ** * * * *
92574435 AAATACCTCAGCACGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGAATTGATTTTTTG-ACA
1 AATTACCTCAGCA--TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAA
* *
92574499 ATAGAAATTGC
63 ACAGAAATTGA
* * * * *
92574510 CATTACCTCAACATGTCCCGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTT
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
92574566 CTTGGAAAAC
Statistics
Matches: 407, Mismatches: 71, Indels: 94
0.71 0.12 0.16
Matches are distributed among these distances:
71 5 0.01
72 30 0.07
73 99 0.24
75 21 0.05
76 6 0.01
77 54 0.13
78 35 0.09
79 46 0.11
80 45 0.11
81 2 0.00
82 7 0.02
83 1 0.00
84 4 0.01
85 1 0.00
86 14 0.03
87 35 0.09
88 2 0.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (73 bp):
AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
GAAATTGA
Found at i:92574337 original size:87 final size:86
Alignment explanation
Indices: 92574191--92574354 Score: 265
Period size: 87 Copynumber: 1.9 Consensus size: 86
92574181 TTGACAATAG
* * *
92574191 AAATTGCCATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGACAATACCTCAACATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
92574256 AAAAACATAAATTGAAACACAA
66 -AAAACAGAAATTGAAACACAA
* *
92574278 AAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGACAATACCTCAACATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
92574343 AAAACAGAAATT
66 AAAACAGAAATT
92574355 TAAAAATACC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
86 11 0.15
87 60 0.85
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (86 bp):
AAATTGACAATACCTCAACATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAACAGAAATTGAAACACAA
Found at i:92574489 original size:152 final size:153
Alignment explanation
Indices: 92573973--92574661 Score: 739
Period size: 152 Copynumber: 4.4 Consensus size: 153
92573963 ATCGACAATT
** * *
92573973 CCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGTGTTGATTTTTGAAAAACAGAAAT
1 CCTCAGCGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTG-AAAACAGAAAT
* * *
92574038 TGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTGACAA
65 TGAAATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAA
92574102 ACA-G-AAACAGAAATTGAAAATA
130 ACATGAAAACAGAAATTGAAAATA
* * *
92574124 CCTCAGCACGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGAATTGATTTTTTTTTTGACAAT
1 CCTCAG--CGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGAGTTGA-----TTTTTGAAAAC
**
92574189 AGAAATTGCCATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
59 AGAAATTGAAATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
92574254 TGAAAAACATAAATTGAAACACAAAAATTGACAATA
124 TGACAAAC----A-TGAAA-ACAGAAATTGAAAATA
** * *
92574290 CCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATT
1 CCTCAGCGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTGAAAACAGAAA-T
* * * * *
92574355 TAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA-ATGAGTTGA-TTTTGACAA
65 TGAAATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAA
*
92574418 ACA-G-AAATAGAAATTGAAAATA
130 ACATGAAAACAGAAATTGAAAATA
* * *
92574440 CCTCAGCACGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGAATTGATTTTTTGACAATAGAA
1 CCTCAG--CGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGAGTTGA-TTTTTGAAAACAGAA
** * * *
92574505 ATTGCCATTACCTCAACATGTCCCGAGGCTCAACTCACTTCTCGAAATATGAGCTGATTTTCTTG
63 ATTGAAATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-TT-
92574570 GA-AAACATGAATTTAAAAAGCAGAAATTGAAAATA
125 GACAAACATG------AAAA-CAGAAATTGAAAATA
* *
92574605 CCTCAGCGT-AACCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAA
1 CCTCAGCGTGAGCC-GAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTGAAAA
92574662 AAACAAAATT
Statistics
Matches: 448, Mismatches: 55, Indels: 59
0.80 0.10 0.10
Matches are distributed among these distances:
150 19 0.04
151 8 0.02
152 74 0.17
153 58 0.13
154 1 0.00
155 2 0.00
156 7 0.02
157 62 0.14
158 26 0.06
159 23 0.05
160 39 0.09
162 13 0.03
163 34 0.08
164 40 0.09
165 22 0.05
166 20 0.04
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (153 bp):
CCTCAGCGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTGAAAACAGAAATT
GAAATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAA
CATGAAAACAGAAATTGAAAATA
Found at i:92586623 original size:18 final size:19
Alignment explanation
Indices: 92586600--92586636 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
92586590 TATGTACATG
92586600 ATATAATATGA-AAATATA
1 ATATAATATGAGAAATATA
*
92586618 ATATAATATTAGAAATATA
1 ATATAATATGAGAAATATA
92586637 TATGTGATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (19 bp):
ATATAATATGAGAAATATA
Found at i:92587782 original size:16 final size:16
Alignment explanation
Indices: 92587761--92587800 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
92587751 AAAAAAAGAG
92587761 AAGGAGAGAGGGGAGA
1 AAGGAGAGAGGGGAGA
92587777 AAGGAGAGAGGGGAGA
1 AAGGAGAGAGGGGAGA
92587793 AAGGAGAG
1 AAGGAGAG
92587801 CACCGGCCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (16 bp):
AAGGAGAGAGGGGAGA
Found at i:92588876 original size:13 final size:13
Alignment explanation
Indices: 92588830--92588880 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
92588820 AAAAATGTAA
92588830 TTTTTT-TTATAT
1 TTTTTTATTATAT
*
92588842 TTGTTTTGTATATAT
1 TT-TTTTAT-TATAT
*
92588857 ATTTTTATTATAT
1 TTTTTTATTATAT
92588870 TTTTTTATTAT
1 TTTTTTATTAT
92588881 GATGTATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
12 2 0.06
13 19 0.58
14 6 0.18
15 6 0.18
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.75
Consensus pattern (13 bp):
TTTTTTATTATAT
Found at i:92589199 original size:30 final size:32
Alignment explanation
Indices: 92589163--92589222 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
92589153 GTTAGGTGGC
92589163 TAGGTTTTT-TTTTTATT-TTTTATTTTTGTT
1 TAGGTTTTTCTTTTTATTCTTTTATTTTTGTT
* *
92589193 TAGGTTTTTCTTTTTCTTCTTTTTTTTTTG
1 TAGGTTTTTCTTTTTATTCTTTTATTTTTG
92589223 GGGATAGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 9 0.35
31 7 0.27
32 10 0.38
ACGTcount: A:0.07, C:0.05, G:0.10, T:0.78
Consensus pattern (32 bp):
TAGGTTTTTCTTTTTATTCTTTTATTTTTGTT
Found at i:92589941 original size:20 final size:21
Alignment explanation
Indices: 92589916--92589970 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 21
92589906 TATTACTTTC
92589916 ATTCTT-TATTCACTATTATT
1 ATTCTTATATTCACTATTATT
* *
92589936 ATTCTTACTAATGCATTATTATT
1 ATTCTTA-T-ATTCACTATTATT
92589959 ATTCTTATATTC
1 ATTCTTATATTC
92589971 TACTTCATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 6 0.21
21 3 0.10
22 2 0.07
23 18 0.62
ACGTcount: A:0.27, C:0.15, G:0.02, T:0.56
Consensus pattern (21 bp):
ATTCTTATATTCACTATTATT
Found at i:92590324 original size:3 final size:3
Alignment explanation
Indices: 92590269--92590357 Score: 67
Period size: 3 Copynumber: 30.0 Consensus size: 3
92590259 TATTTACTTA
* * * * *
92590269 TAT TAT TACT TA- TAT TAG TAT TAC TAT TAT CAT TAT GATT TAT TAC
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
* * *
92590315 T-T TAT TAT TAT CAT TAT TAC TAC TAT TA- TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
92590358 ATTTTTGTCC
Statistics
Matches: 67, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
2 5 0.07
3 57 0.85
4 5 0.07
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:92590333 original size:20 final size:21
Alignment explanation
Indices: 92590287--92590353 Score: 75
Period size: 20 Copynumber: 3.2 Consensus size: 21
92590277 CTTATATTAG
* *
92590287 TATTACTATTATCATTATGATT
1 TATTACTATTATTATTATCA-T
92590309 TATTACT-TTATTATTATCAT
1 TATTACTATTATTATTATCAT
* *
92590329 TATTACTACTATTA-TATTAT
1 TATTACTATTATTATTATCAT
92590349 TATTA
1 TATTA
92590354 TTATATTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
20 18 0.45
21 15 0.38
22 7 0.17
ACGTcount: A:0.33, C:0.09, G:0.01, T:0.57
Consensus pattern (21 bp):
TATTACTATTATTATTATCAT
Found at i:92591657 original size:14 final size:15
Alignment explanation
Indices: 92591632--92591660 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
92591622 TTAGGAAACG
92591632 TACATAAAAAATATA
1 TACATAAAAAATATA
92591647 TACAT-AAAAATATA
1 TACATAAAAAATATA
92591661 CAACAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.28
Consensus pattern (15 bp):
TACATAAAAAATATA
Found at i:92591661 original size:12 final size:13
Alignment explanation
Indices: 92591639--92591752 Score: 53
Period size: 12 Copynumber: 9.1 Consensus size: 13
92591629 ACGTACATAA
92591639 AAAATATATACAT
1 AAAATATATACAT
92591652 AAAA-ATATACA-
1 AAAATATATACAT
* *
92591663 ACAATAATATAAAAT
1 AAAAT-ATAT-ACAT
*
92591678 AATAATATGTACA-
1 AA-AATATATACAT
* *
92591691 AATATATATATAT
1 AAAATATATACAT
* *
92591704 -ATATATATATAT
1 AAAATATATACAT
* *
92591716 -ATATATATATAT
1 AAAATATATACAT
*
92591728 -ATATATATACAT
1 AAAATATATACAT
*
92591740 -ATATATATACAT
1 AAAATATATACAT
92591752 A
1 A
92591753 TGTACATAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
11 3 0.04
12 61 0.72
13 10 0.12
14 4 0.05
15 4 0.05
16 3 0.04
ACGTcount: A:0.57, C:0.05, G:0.01, T:0.37
Consensus pattern (13 bp):
AAAATATATACAT
Found at i:92591699 original size:2 final size:2
Alignment explanation
Indices: 92591692--92591753 Score: 106
Period size: 2 Copynumber: 31.0 Consensus size: 2
92591682 ATATGTACAA
92591692 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
92591734 AT AC AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT
92591754 GTACATAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:92591753 original size:12 final size:12
Alignment explanation
Indices: 92591682--92591753 Score: 99
Period size: 12 Copynumber: 6.0 Consensus size: 12
92591672 TAAAATAATA
* *
92591682 ATATGTACAAAT
1 ATATATACATAT
*
92591694 ATATATATATAT
1 ATATATACATAT
*
92591706 ATATATATATAT
1 ATATATACATAT
*
92591718 ATATATATATAT
1 ATATATACATAT
92591730 ATATATACATAT
1 ATATATACATAT
92591742 ATATATACATAT
1 ATATATACATAT
92591754 GTACATAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 56 1.00
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.44
Consensus pattern (12 bp):
ATATATACATAT
Found at i:92591760 original size:8 final size:8
Alignment explanation
Indices: 92591682--92591744 Score: 63
Period size: 8 Copynumber: 7.9 Consensus size: 8
92591672 TAAAATAATA
*
92591682 ATATGTAC
1 ATATATAC
* *
92591690 AAATATAT
1 ATATATAC
*
92591698 ATATATAT
1 ATATATAC
*
92591706 ATATATAT
1 ATATATAC
*
92591714 ATATATAT
1 ATATATAC
*
92591722 ATATATAT
1 ATATATAC
92591730 ATATATAC
1 ATATATAC
92591738 ATATATA
1 ATATATA
92591745 TATACATATG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 50 1.00
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (8 bp):
ATATATAC
Found at i:92591892 original size:2 final size:2
Alignment explanation
Indices: 92591849--92591873 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
92591839 GGTATTTAAA
92591849 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
92591874 ATAGTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:92593297 original size:87 final size:88
Alignment explanation
Indices: 92593128--92593709 Score: 371
Period size: 87 Copynumber: 6.6 Consensus size: 88
92593118 TCTTTACTCG
* * * ** * *
92593128 GCATGTGATCCTGA-GCTTAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAC-TAGACATT
1 GCATGTGAGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTAAAACATA-A-ATT
*
92593191 -AAAAACAGAAATTGAAAATAGCTCA
63 GAAAAACAGAAATTGAAAATACCTCA
* * *
92593216 GCACGTGAGCC-AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACA-AAATTTGT
1 GCATGTGAGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACATAAA-TTGA
**
92593279 AAAACAGATTTTGAAAATACCTC-
65 AAAACAGAAATTGAAAATACCTCA
* * * * *
92593302 GATATGTGACCCGAA-GCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGCAAAGCATAAA--
1 G-CATGTGAGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--AAAACATAAATT
** * *
92593364 -AAAAA-ATCAATTGAAAATAGCTCG
63 GAAAAACAGAAATTGAAAATACCTCA
* * * *
92593388 GCGTGTGA-CCTGAGACTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTTACAAACATAAAT
1 GCATGTGAGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTT-G--ATTTTTA-AAACATAAAT
*
92593452 TGAAAAAAAAAAGAAATTGAAAATACCTCA
62 TG---AAAAACAGAAATTGAAAATACCTCA
* * *
92593482 GC--GTG-TCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGGAAAAACA-AA
1 GCATGTGAGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTT---AAAACATAA
*
92593543 ATTTTGAAAAACAGAATTTGAAAATACCTCA
60 A--TTGAAAAACAGAAATTGAAAATACCTCA
* * * * *
92593574 GCGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAAT
1 GCATGTGAGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT-AAA-ACATAAAT
* * **
92593638 TGAAGAACAGAAATGGAAAGCACCTCA
62 TGAAAAACAGAAATTGAAAATACCTCA
* * * **
92593665 GC--GT---CTTGAGGTTCAACTCACCTCTCGCAATATGACCTGATTTTT
1 GCATGTGAGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
92593710 TTGAAAGACA
Statistics
Matches: 399, Mismatches: 58, Indels: 77
0.75 0.11 0.14
Matches are distributed among these distances:
84 3 0.01
85 50 0.13
86 11 0.03
87 108 0.27
88 43 0.11
89 7 0.02
90 3 0.01
91 29 0.07
92 68 0.17
93 18 0.05
94 54 0.14
95 5 0.01
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (88 bp):
GCATGTGAGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACATAAATTGAA
AAACAGAAATTGAAAATACCTCA
Found at i:92593540 original size:94 final size:93
Alignment explanation
Indices: 92593361--92593730 Score: 362
Period size: 92 Copynumber: 4.0 Consensus size: 93
92593351 TGCAAAGCAT
** * * *
92593361 AAAAAAAAATCAATTGAAAATAGCTCGGCGTGTGACCTGAGACTCAACTCACCTCTCGCAATATG
1 AAAAAAAAAGAAATTGAAAATACCTCAGCGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATG
* * * * *
92593426 AGTTGGTTTTTTTTACAAACATAAATTGA
65 AGCTGATTTTTTTGAAAAACAGAAATTGA
*
92593455 AAAAAAAAAGAAATTGAAAATACCTCAGCGTGT-CCTGAGGCTGAACTCACCTCTCGCAATATGA
1 AAAAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
92593519 GTTGATTTTTTTTGGAAAAACA-AAATT-T
66 GCTGA-TTTTTTT-GAAAAACAGAAATTGA
** * * ** * *
92593547 TGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATG
1 AAAAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCT-GAGGCTCAACTCACCTCTCGCAATATG
*
92593612 AGCTGATTTTTTTGAAACACAGAAATTG-
65 AGCTGATTTTTTTGAAAAACAGAAATTGA
* * * ** * *
92593640 --AAGAACAGAAATGGAAAGCACCTCAGC--GT-CTTGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
92593700 CCTGATTTTTTTGAAAGACAGAAATTGA
66 GCTGATTTTTTTGAAAAACAGAAATTGA
92593728 AAA
1 AAA
92593731 TACCTCAATA
Statistics
Matches: 234, Mismatches: 33, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
87 50 0.21
88 1 0.00
89 2 0.01
90 1 0.00
91 22 0.09
92 69 0.29
93 25 0.11
94 64 0.27
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (93 bp):
AAAAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGA
GCTGATTTTTTTGAAAAACAGAAATTGA
Found at i:92593562 original size:14 final size:15
Alignment explanation
Indices: 92593528--92593566 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
92593518 AGTTGATTTT
92593528 TTTTGGAAAAACAAAA
1 TTTT-GAAAAACAAAA
*
92593544 TTTTGAAAAACAGAA
1 TTTTGAAAAACAAAA
92593559 -TTTGAAAA
1 TTTTGAAAA
92593567 TACCTCAGCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.36
15 10 0.45
16 4 0.18
ACGTcount: A:0.54, C:0.05, G:0.13, T:0.28
Consensus pattern (15 bp):
TTTTGAAAAACAAAA
Found at i:92593710 original size:87 final size:86
Alignment explanation
Indices: 92593228--92593975 Score: 351
Period size: 87 Copynumber: 8.7 Consensus size: 86
92593218 ACGTGAGCCA
* * * **
92593228 AGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT-AAAACA-AAATTTGTAAAACAGATT
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAACAGAAA-TTGAAAAACAGAAA
* * **
92593289 TTGAAAATACCTCGATATGTGACCCG
65 TTGAAAATACCTC---A-GCGTCTTG
* * * * * **
92593315 AAGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGCATAAA---AAAAA-ATCAA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG-AAAACAGAAATTGAAAAACAGAAA
* * *
92593374 TTGAAAATAGCTCGGCGTGTGACCTG
65 TTGAAAATACCTCAGC--GT--CTTG
* * * * * *
92593400 AGACTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTTACAAACATAAATTGAAAAAAAAAAG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGA-AAACAGAAATTG---AAAAACAG
*
92593465 AAATTGAAAATACCTCAGCGTGTCCTG
62 AAATTGAAAATACCTCAGC--GTCTTG
* *
92593492 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGGAAAAACA-AAATTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTT-G-AAAACAGAAA--TTGAAAAACA
* * *
92593556 GAATTTGAAAATACCTCAGCGTGTGAGTCA
61 GAAATTGAAAATACCTCAGCGTCT---T-G
* *
92593586 AGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA-ACAGAAATTGAAAAACAGAAA
* **
92593651 TGGAAAGCACCTCAGCGTCTTG
65 TTGAAAATACCTCAGCGTCTTG
* *
92593673 AGGTTCAACTCACCTCTCGCAATATGACCTGATTTTTTTGAAAGACAGAAATTGAAAATAC----
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA-ACAGAAATTGAAAA-ACAGAA
* *
92593734 -CT--CAATA--T----GTCTTG
64 ATTGAAAATACCTCAGCGTCTTG
* * ** * ** **
92593748 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTTTTG-AAACTTAACTTGAAAAGTAGATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAACAGAAATTGAAAAACAGAAAT
* * **
92593810 TGAAAATACCTCGATATGTGACTCA
66 TGAAAATACCTC---A-GCGTCTTG
* * * **
92593835 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTGAAAAATATAAATTGAAGTA-A-AAA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG-AAAACAGAAATTGAAAAACAGAAA
* *
92593895 ---AAAATACCTCAGTGTGTGATCTG
65 TTGAAAATACCTCA--GCGT-CT-TG
* *
92593918 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA-ACAGAAATTGAAAA
92593976 TACCTCAGTA
Statistics
Matches: 521, Mismatches: 85, Indels: 111
0.73 0.12 0.15
Matches are distributed among these distances:
71 11 0.02
72 2 0.00
73 6 0.01
75 35 0.07
77 4 0.01
79 2 0.00
80 1 0.00
81 7 0.01
82 1 0.00
83 42 0.08
85 47 0.09
86 26 0.05
87 135 0.26
88 14 0.03
89 5 0.01
90 5 0.01
91 31 0.06
92 62 0.12
93 26 0.05
94 55 0.11
95 4 0.01
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAACAGAAATTGAAAAACAGAAAT
TGAAAATACCTCAGCGTCTTG
Found at i:92593765 original size:75 final size:73
Alignment explanation
Indices: 92593637--92594341 Score: 484
Period size: 72 Copynumber: 9.3 Consensus size: 73
92593627 AACACAGAAA
* ** * *
92593637 TTGAAGAACAGAAATGGAAAGCACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
**
92593700 CCTGATTTTT
65 GTTGA-TTTT
* *
92593710 TTGAAAGACAGAAATTGAAAATACCTCAATATGTCTTGAGGCTCAACTCATCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
92593775 GTTGA-TTT
65 GTTGATTTT
** * ** * * * ** *
92593783 TTG-AAACTTAACTTGAAAAGTAGATTTTGAAAATACCTCGATATGTGACTCAAGGCTCAACTCA
1 TTGAAAACAGAAATTGAAAA-T--A-CCT--CAAT--GT-G-TCT-TGAGGC-T----CAACTCA
92593847 CCTCTCGCAATATGAGTTGA--TT
50 CCTCTCGCAATATGAGTTGATTTT
* * * * *
92593869 TTGAAAAATATAAATTGAAGTAAAAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTC
1 TTG-AAAACAGAAATT---G------AAAATACCTCAATGTGT-CT-TGAGGCTCAACTCACCTC
92593934 TCGCAATATGAGTTGATTTTT
54 TCGCAATATGAGTTGA-TTTT
* *
92593955 TTGAAAGACAGAAATTGAAAATACCTCAGTATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCA--ATGTG-TCTTGAGGCTCAACTCACCTCTCGCAATA
*
92594019 TAAGTTGATTTT
62 TGAGTTGATTTT
* **
92594031 TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
*
92594096 TTGA-ATT
66 TTGATTTT
* * * **
92594103 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGTTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
*
92594168 TTGA-ATT
66 TTGATTTT
* * **
92594175 TTGAAAACAG--ATTGAAATTACCTCAGTGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
92594238 TTGA-TTT
66 TTGATTTT
* ** * **
92594245 TTGAAAACAGAAATT-AAAATTAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAACAGAAATTGAAAA-TACCTCA--ATGTG-TCTTGAGGCTCAACTCACCTCTCGCAATA
*
92594308 TGAGTCGATTTTT
62 TGAGTTGA-TTTT
*
92594321 TTGAAAGGCAGAAATTGAAAA
1 TTGAAA-ACAGAAATTGAAAA
92594342 ACGGAAATTG
Statistics
Matches: 518, Mismatches: 65, Indels: 93
0.77 0.10 0.14
Matches are distributed among these distances:
70 62 0.12
71 14 0.03
72 96 0.19
73 62 0.12
74 38 0.07
75 57 0.11
76 19 0.04
77 53 0.10
78 4 0.01
79 5 0.01
80 1 0.00
81 2 0.00
82 4 0.01
83 28 0.05
85 3 0.01
86 17 0.03
87 27 0.05
88 15 0.03
89 1 0.00
91 3 0.01
93 1 0.00
94 1 0.00
96 1 0.00
97 4 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:92593913 original size:83 final size:85
Alignment explanation
Indices: 92593748--92593953 Score: 244
Period size: 83 Copynumber: 2.4 Consensus size: 85
92593738 ATATGTCTTG
* * * ***
92593748 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAACTTAACTTGAAAAGTAGATTTTGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAATTAAATTG-AAAGTAGA-TAAAA
92593813 AAATACCTCGATATGTGA-CTCA
63 AAATACCTCGATATGTGATCTCA
92593835 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAATATAAATTG-AAGTA-A-AAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAAT-TAAATTGAAAGTAGATAAAAA
* *
92593897 AATACCTC-AGTGTGTGATCTGA
64 AATACCTCGA-TATGTGATCTCA
92593919 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
92593954 TTTGAAAGAC
Statistics
Matches: 107, Mismatches: 8, Indels: 12
0.84 0.06 0.09
Matches are distributed among these distances:
82 1 0.01
83 50 0.47
84 4 0.04
85 1 0.01
86 10 0.09
87 35 0.33
88 6 0.06
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (85 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAATTAAATTGAAAGTAGATAAAAAAA
TACCTCGATATGTGATCTCA
Found at i:92594217 original size:142 final size:145
Alignment explanation
Indices: 92593920--92595037 Score: 583
Period size: 147 Copynumber: 7.2 Consensus size: 145
92593910 GTGATCTGAA
*
92593920 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAATTACCTCAG-
* *
92593985 ATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAA
62 ACGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTGAAAACAG-AATTGAAA
**
92594050 ATACCTCAACGTGTCTTGAG
126 ATACCTCAACGTGTCCCGAG
** *
92594070 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA-ACGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGACGT
* * * ** * *
92594134 G-TCTTGAGGTTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAG-ATTGAAATTAC
66 GAAC-CGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTGAAAACAGAATTGAAAATAC
**
92594196 CTCAGTGTGTCCCGAG
130 CTCAACGTGTCCCGAG
* * *
92594212 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTAAAATTAGCTCAGCGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAG-ACG
* * * * *
92594277 TGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAAATTGAAAA
65 TGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA---TATT------------TTG-AAA
* ** *
92594342 ACGGAAATTGAAAATACCTCGGCGTGTGACCTGAG
114 ACAG-AATTGAAAATACCTCAACGTGT--CCCGAG
* * * * * *
92594377 GCTCAACTCGCCTCTCGCAATACGAGTTGGTTTTTTTGACAACAGAAATTGAAATTAGCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAACAGAAATTGAAATTACCTCAG-A
* * *
92594442 CGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTGAAACTTAACTTGAAAAG
63 CGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTG-AA---AAC------A-
* * * * *
92594506 TTGATTTTGAAAATACCTCGATATGTGACTCAAG
117 --GA-ATTGAAAATACCTC-A-ACGTGTCCCGAG
* *
92594540 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAAACA-AAATTGAAAAAAATACTTCAG-
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTG---AAATTACCTCAGA
* * * * * *
92594602 TGTATGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG
63 CG--TGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TATTTTGAAA-ACAG-AATTG
* * ** *
92594667 AAAATAGCTCAGCGCGTGAGCCAAG
123 AAAATACCTCA--ACGTGTCCCGAG
* **
92594692 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAGCAGAAATTGAAA--AACGGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTGAAAA-CAGAAATTGAAATTACCTCA
** * * * * * ** * * *
92594755 -AATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACG-AGTTGATTT
61 GACGTG---A-A---C--CGAG-G--CTCA-ACTC-AC-C-TCTCGCAATATAAGTTGAT-ATTT
* * * *
92594818 TTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
109 --TGAAAACAG-AATTGAAAATACCTCAACGTGTCCCGAG
* * *
92594858 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCA-A
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAATTACCTCAGA
* * ** *
92594922 CGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAA
63 CGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTGAAAACAG-AATTGAAA
* **
92594985 TTACCTCAACGTGTCTTGAG
126 ATACCTCAACGTGTCCCGAG
*
92595005 GCTCAACTCATCTCTCGCAATATGAGTTGATTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTT
92595038 CCCTTGAAAA
Statistics
Matches: 759, Mismatches: 126, Indels: 171
0.72 0.12 0.16
Matches are distributed among these distances:
142 77 0.10
144 45 0.06
145 37 0.05
147 83 0.11
148 10 0.01
149 4 0.01
150 36 0.05
151 8 0.01
152 54 0.07
153 4 0.01
154 8 0.01
155 2 0.00
156 9 0.01
157 6 0.01
158 3 0.00
159 13 0.02
160 10 0.01
161 14 0.02
162 47 0.06
163 66 0.09
164 31 0.04
165 38 0.05
166 47 0.06
167 76 0.10
168 27 0.04
169 4 0.01
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.29
Consensus pattern (145 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGACGT
GAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTGAAAACAGAATTGAAAATACC
TCAACGTGTCCCGAG
Found at i:92594487 original size:167 final size:164
Alignment explanation
Indices: 92594185--92594670 Score: 569
Period size: 163 Copynumber: 3.0 Consensus size: 164
92594175 TTGAAAACAG
* * *
92594185 ATTGAAATTACCTC-A-GTGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 ATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
92594248 AAAACAGAAATTAAAATTAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
66 AAAACAGAAATTGAAATTAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
*
92594313 CGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAA
131 TGATTTTTTTGAAA-GCAGAAATTGAAAAACGGAA
* * * *
92594348 ATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGGTTTTTT
1 ATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTT
*
92594413 TGACAACAGAAATTGAAATTAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGA
64 TGAAAACAGAAATTGAAATTAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGA
** * *** *
92594478 GTTGA--TTTTTGAAA-CTTAACTTGAAAAGTTGAT
129 GTTGATTTTTTTGAAAGCAGAAATTGAAAAACGGAA
* ** *
92594511 TTTGAAAATACCTCGATATGTGA-CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 ATTGAAAATACCTCGACGTGTGACCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * ** * *
92594575 -AAAACA-AAATTGAAAAAAATA-CTTCAGTGTATGATCTGAA-GCTCAACTCACCTCTCGCAAT
65 GAAAACAGAAATTG---AAATTAGC-TCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAAT
92594636 ATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAA
125 ATGAGTTGATTTTTTTGAAAG-CAGAAATTGAAAA
92594671 TAGCTCAGCG
Statistics
Matches: 274, Mismatches: 35, Indels: 25
0.82 0.10 0.07
Matches are distributed among these distances:
159 6 0.02
160 5 0.02
161 6 0.02
162 47 0.17
163 74 0.27
164 9 0.03
165 45 0.16
166 11 0.04
167 71 0.26
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29
Consensus pattern (164 bp):
ATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAACAGAAATTGAAATTAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGAAAGCAGAAATTGAAAAACGGAA
Found at i:92594638 original size:75 final size:75
Alignment explanation
Indices: 92594536--92594726 Score: 239
Period size: 77 Copynumber: 2.5 Consensus size: 75
92594526 ATATGTGACT
92594536 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAA-ACA-AAATTGAAAAAAATA-C
1 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGACAGAAATTG---AAAATAGC
* * *
92594597 TTCAGTGTATGATC
63 -TCAGCGCATGAGC
*
92594611 TGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGC
1 -CAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAGACAGAAATTGAAAATAGC
*
92594675 TCAGCGCGTGAGC
63 TCAGCGCATGAGC
92594688 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
92594727 TTTTGAAAAG
Statistics
Matches: 102, Mismatches: 6, Indels: 15
0.83 0.05 0.12
Matches are distributed among these distances:
75 35 0.34
76 4 0.04
77 50 0.49
78 4 0.04
79 3 0.03
80 6 0.06
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (75 bp):
CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGACAGAAATTGAAAATAGCTCA
GCGCATGAGC
Found at i:92594748 original size:14 final size:14
Alignment explanation
Indices: 92594729--92594763 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
92594719 TGATTTTTTT
*
92594729 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
*
92594743 TTGAAAAACGGAAA
1 TTGAAAAACAGAAA
92594757 TTGAAAA
1 TTGAAAA
92594764 TACCTCGGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:92594812 original size:93 final size:93
Alignment explanation
Indices: 92594650--92594820 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
92594640 GTTGATTTTT
* * * *
92594650 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
92594715 GAGTTGATTTTTTTTTGAAAAGCAGAAA
66 GAGTTGATTTTTTTTTGAAAAGCAGAAA
* * * * *
92594743 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCACAATA
92594807 CGAGTTGATTTTTT
65 CGAGTTGATTTTTT
92594821 GACAACAGAA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 2 0.03
93 66 0.97
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (93 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
GAGTTGATTTTTTTTTGAAAAGCAGAAA
Found at i:92594910 original size:243 final size:238
Alignment explanation
Indices: 92594339--92594984 Score: 724
Period size: 243 Copynumber: 2.7 Consensus size: 238
92594329 CAGAAATTGA
* * * *
92594339 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
92594404 TGGTTTTTTTGACA-ACAGAAATTGAAATTAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCT
64 TGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCT
** * *** ** *
92594468 CGCAATATGAGTTGA---TTTTTGAAACTTAACTTGAAAAGTTGATTTTGAAAATACCTCGATAT
129 CGCAATATGAGTTGATTTTTTTTGAAACAGAAATTGAAAAACGGAAATTGAAAATACCTCGACAT
* *
92594530 GTGACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
194 GTGACTCAAGGCTCAACTCACCTCTCACAATACGAGTTGATTTTT
* * *
92594575 AAAACA-AAATTGAAAAAAATACTTCAGTGTATGAT-CTGAAGCTCAACTCACCTCTCGCAATAT
1 AAAACAGAAATTG---AAAATACCTCAGCG--TG-TCCTGAGGCTCAACTCACCTCTCGCAATAT
92594638 GAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCAC
60 GAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCAC
92594703 CTCTCGCAATATGAGTTGATTTTTTTTTGAAAAGCAGAAATTGAAAAACGGAAATTGAAAATACC
125 CTCTCGCAATATGAGTTGA-TTTTTTTTG-AAA-CAGAAATTGAAAAACGGAAATTGAAAATACC
* * * *
92594768 TCGGCGTGTGAC-CTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTT
187 TCGACATGTGACTC-AAGGCTCAACTCACCTCTCACAATACGAGTTGA-TTTTT
* * *
92594821 GACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * ** **
92594886 GATTTTTTTGAAAGACAAAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCT
65 GATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCT
*
92594948 CGCAATATGAGTTGA---ATTTTGAAAACAGAAATTGAAA
129 CGCAATATGAGTTGATTTTTTTTG-AAACAGAAATTGAAA
92594985 TTACCTCAAC
Statistics
Matches: 351, Mismatches: 40, Indels: 38
0.82 0.09 0.09
Matches are distributed among these distances:
235 6 0.02
236 17 0.05
237 9 0.03
238 52 0.15
239 64 0.18
240 3 0.01
241 35 0.10
242 1 0.00
243 72 0.21
244 4 0.01
245 72 0.21
246 5 0.01
247 5 0.01
248 6 0.02
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29
Consensus pattern (238 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTTTGAAACAGAAATTGAAAAACGGAAATTGAAAATACCTCGACATGT
GACTCAAGGCTCAACTCACCTCTCACAATACGAGTTGATTTTT
Found at i:92595007 original size:72 final size:73
Alignment explanation
Indices: 92594747--92595037 Score: 377
Period size: 75 Copynumber: 3.9 Consensus size: 73
92594737 CAGAAATTGA
* ** * * *
92594747 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
92594812 TGATTTTTTG
64 TGATTTTTTG
* * * *
92594822 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
92594887 ATTTTTTTG
66 A-TTTTTTG
* * **
92594896 AAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAA-ACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
92594961 GA-ATTTTG
65 GATTTTTTG
* * *
92594969 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
92595034 ATTT
66 ATTT
92595038 CCCTTGAAAA
Statistics
Matches: 192, Mismatches: 21, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
72 60 0.31
73 41 0.21
74 9 0.05
75 82 0.43
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (73 bp):
AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTG
Found at i:92605183 original size:2 final size:2
Alignment explanation
Indices: 92605169--92605215 Score: 60
Period size: 2 Copynumber: 24.0 Consensus size: 2
92605159 AATATGTACA
* *
92605169 AT AT AT A- AA AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
92605210 AC AT AT
1 AT AT AT
92605216 GTACATAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:92605185 original size:22 final size:23
Alignment explanation
Indices: 92605144--92605227 Score: 70
Period size: 22 Copynumber: 3.8 Consensus size: 23
92605134 AAAAATTACA
* * *
92605144 ACAATA-ATATAAATAAATATGT
1 ACAATATATACAAATATATATAT
92605166 ACAATATATA-AAATATATATAT
1 ACAATATATACAAATATATATAT
*
92605188 ATATATATATAC--ATATATATAT
1 ACA-ATATATACAAATATATATAT
*
92605210 AC-ATATGTACATAATATA
1 ACAATATATACA-AATATA
92605228 CACTAATATA
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
20 7 0.14
22 29 0.57
23 15 0.29
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (23 bp):
ACAATATATACAAATATATATAT
Found at i:92605195 original size:12 final size:12
Alignment explanation
Indices: 92605169--92605215 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
92605159 AATATGTACA
*
92605169 ATATATA-AAAT
1 ATATATACATAT
*
92605180 ATATATATATAT
1 ATATATACATAT
92605192 ATATATACATAT
1 ATATATACATAT
92605204 ATATATACATAT
1 ATATATACATAT
92605216 GTACATAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
11 7 0.21
12 26 0.79
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATATACATAT
Found at i:92605315 original size:2 final size:2
Alignment explanation
Indices: 92605308--92605338 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
92605298 TGGTATTTAA
92605308 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
92605339 ATAGTATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:92610754 original size:13 final size:13
Alignment explanation
Indices: 92610738--92610763 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92610728 CTAGACACAC
92610738 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
92610751 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
92610764 CACACGGACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.38, G:0.23, T:0.38
Consensus pattern (13 bp):
GCCCGTGTCCTTT
Found at i:92613168 original size:40 final size:39
Alignment explanation
Indices: 92613123--92613330 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
92613113 CGGAATACAA
*
92613123 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
92613163 CCGGATACAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
92613203 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
92613243 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
92613283 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
92613323 CCGGATAT
1 CCGGATAT
92613331 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:92613263 original size:80 final size:80
Alignment explanation
Indices: 92613123--92613329 Score: 245
Period size: 80 Copynumber: 2.6 Consensus size: 80
92613113 CGGAATACAA
* * *
92613123 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATACAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATACAACGACTAGCACAAATG
*
92613188 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* ** * *
92613203 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATACA-ACGACTAGCACAAAT
*
92613267 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
92613283 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
92613330 TCATTCAATT
Statistics
Matches: 107, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
80 106 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATACAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:92619284 original size:64 final size:65
Alignment explanation
Indices: 92619210--92619339 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
92619200 CCAACCAAAA
92619210 TTCAGCTTGCTCGGCATCGTCATCAT-CGTAGCTTTAAACTCAGTGGCCCCATGTTTTCGAATCC
1 TTCAGCTTGCTCGGCATCGTCATCATCCGTAGCTTTAAACTCAGTGGCCCCATGTTTTCGAATCC
92619274 TTCAGCTTGCTCGGCATCGTCATCATCCGTAGCTTTAAACTCAGTGGCCCCATGTTTTCGAATCC
1 TTCAGCTTGCTCGGCATCGTCATCATCCGTAGCTTTAAACTCAGTGGCCCCATGTTTTCGAATCC
92619339 T
1 T
92619340 GTCGACTGGG
Statistics
Matches: 65, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
64 26 0.40
65 39 0.60
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.33
Consensus pattern (65 bp):
TTCAGCTTGCTCGGCATCGTCATCATCCGTAGCTTTAAACTCAGTGGCCCCATGTTTTCGAATCC
Found at i:92621197 original size:40 final size:39
Alignment explanation
Indices: 92621135--92621339 Score: 194
Period size: 40 Copynumber: 5.1 Consensus size: 39
92621125 AATACAACCA
* *
92621135 GATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCG
1 GATATAA-CACTTGCACAAATGCCTTCGGGTCTTAGCCCG
* * *
92621175 GATACAACGACTTGCACAAATGCCTTCGGGTATTAGCTCG
1 GATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGCCCG
* *
92621215 GATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCG
1 GATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGCCCG
* * * * * * *
92621255 GATGTAGTCACTAGCACAATTGCGTTCGGGTCTTAACCTG
1 GATATA-ACACTTGCACAAATGCCTTCGGGTCTTAGCCCG
* * * * *
92621295 GATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCG
1 GATATAA-CACTTGCACAAATGCCTTCGGGTCTTAGCCCG
92621335 GATAT
1 GATAT
92621340 CATTCAGTTG
Statistics
Matches: 133, Mismatches: 29, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 131 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.27
Consensus pattern (39 bp):
GATATAACACTTGCACAAATGCCTTCGGGTCTTAGCCCG
Found at i:92625218 original size:93 final size:92
Alignment explanation
Indices: 92625060--92625229 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 92
92625050 GCCCCTAAGT
*
92625060 GAACTCGGACTCAACTCAACGAGCTCGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
92625125 GAGTTCGGATGCCTAGTTACATTTCAC
66 GAGTTCGGATGCCTAGTTACATTTCAC
*
92625152 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92625217 CGAGTTCGGATGC
65 CGAGTTCGGATGC
92625230 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 25 0.33
93 50 0.67
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCAC
Found at i:92625219 original size:46 final size:46
Alignment explanation
Indices: 92625055--92625226 Score: 210
Period size: 45 Copynumber: 3.7 Consensus size: 46
92625045 AACCCGCCCC
* *
92625055 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GACGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
92625100 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
92625148 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
92625193 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
92625227 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 32 0.30
46 31 0.29
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:92625682 original size:30 final size:30
Alignment explanation
Indices: 92625648--92625707 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
92625638 ATTTAATACG
92625648 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
92625678 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
92625708 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:92630009 original size:92 final size:92
Alignment explanation
Indices: 92629897--92630067 Score: 288
Period size: 92 Copynumber: 1.9 Consensus size: 92
92629887 GCCCCTAAGT
* * *
92629897 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCAGACTCAACTCAA
92629962 CGAGTTCGGATGCTAGTTACATTTCAC
66 CGAGTTCGGATGCTAGTTACATTTCAC
* * *
92629989 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCAGACTCAACTCAA
92630054 CGAGTTCGGATGCT
66 CGAGTTCGGATGCT
92630068 CAACCATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (92 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCTAGTTACATTTCAC
Found at i:92630063 original size:46 final size:46
Alignment explanation
Indices: 92629893--92630063 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
92629883 ACCCGCCCCT
* * * *
92629893 AAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAC
* *
92629939 AAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTAGTT-ACATTTCAC
1 AAGTGAACTCAGACTCAACTCAACGAGTTCGGA--C-A-TTCGCA-TCCAC
*
92629989 ----GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAC
1 AAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAC
*
92630031 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 AAGTGAACTCAGACTCAACTCAACGAGTTCGGA
92630064 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
42 6 0.06
43 3 0.03
44 1 0.01
46 88 0.83
48 1 0.01
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
AAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAC
Found at i:92630520 original size:30 final size:30
Alignment explanation
Indices: 92630486--92630545 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
92630476 ATTTAATACG
92630486 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
92630516 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
92630546 GGCTCGGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:92632569 original size:24 final size:24
Alignment explanation
Indices: 92632542--92632604 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
92632532 CTTATTATGT
92632542 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
92632566 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
92632590 TCGCACACATAGTGC
1 TCGCACACATAGTGC
92632605 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:92640812 original size:40 final size:40
Alignment explanation
Indices: 92640587--92640789 Score: 268
Period size: 40 Copynumber: 5.0 Consensus size: 40
92640577 TCGAATGATG
* * * *
92640587 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
92640627 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
92640667 TCCGGACTAAGATCCGAAGGCATTTGTGCGTGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
92640707 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** *
92640747 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
92640788 TC
1 TC
92640790 GGGCTATGTC
Statistics
Matches: 148, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 136 0.92
41 11 0.07
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:92648230 original size:20 final size:19
Alignment explanation
Indices: 92648184--92648222 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
92648174 AAATTTGTTA
92648184 AAGGTGGTTTCAATTTTGG
1 AAGGTGGTTTCAATTTTGG
92648203 AAGGGTGGTTTCAATTTTGG
1 AA-GGTGGTTTCAATTTTGG
92648223 GCAGGTGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.21, C:0.05, G:0.33, T:0.41
Consensus pattern (19 bp):
AAGGTGGTTTCAATTTTGG
Found at i:92658163 original size:25 final size:25
Alignment explanation
Indices: 92658130--92658177 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
92658120 TTATAATATG
* *
92658130 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
92658155 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
92658178 GTTTATACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:92658244 original size:20 final size:20
Alignment explanation
Indices: 92658221--92658304 Score: 150
Period size: 20 Copynumber: 4.2 Consensus size: 20
92658211 TAAACATGGT
92658221 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
92658241 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
92658261 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
92658281 ATGTATGATATGCACATGAG
1 ATGTATGATATGCACATGAC
92658301 ATGT
1 ATGT
92658305 TCATAAATGC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:92658261 original size:11 final size:11
Alignment explanation
Indices: 92658225--92658299 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
92658215 CATGGTATGT
92658225 ATGATATGCAC
1 ATGATATGCAC
* *
92658236 ATGACATG--T
1 ATGATATGCAC
92658245 ATGATATGCAC
1 ATGATATGCAC
*
92658256 ATGATATG--T
1 ATGATATGCAC
92658265 ATGATATGCAC
1 ATGATATGCAC
* *
92658276 ATGACATG--T
1 ATGATATGCAC
92658285 ATGATATGCAC
1 ATGATATGCAC
92658296 ATGA
1 ATGA
92658300 GATGTTCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:92658430 original size:25 final size:24
Alignment explanation
Indices: 92658351--92658544 Score: 234
Period size: 25 Copynumber: 8.0 Consensus size: 24
92658341 AGGAAGTGCA
92658351 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
*
92658374 AAAGGGCTTATGCCCTAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
92658397 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
92658422 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
92658447 GAAGGGCTTATGCCCCAGTTGTGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
92658472 AAAGGGCTTTTGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
* *
92658496 AAAGGGCTTTTTCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
92658520 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
92658545 GATAAAGCAG
Statistics
Matches: 153, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
23 43 0.28
24 30 0.20
25 80 0.52
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:92658771 original size:31 final size:31
Alignment explanation
Indices: 92658736--92658799 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
92658726 CGTTTACAGT
* *
92658736 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
**
92658767 AAAGGCTTCAGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
92658798 AA
1 AA
92658800 TATGAAATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:92661117 original size:20 final size:20
Alignment explanation
Indices: 92661092--92661132 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
92661082 CATTATAGCA
92661092 TTACTAGAAAAGTCATGTTT
1 TTACTAGAAAAGTCATGTTT
92661112 TTACTAGAAAAGTCATGTTT
1 TTACTAGAAAAGTCATGTTT
92661132 T
1 T
92661133 ATCTAAAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (20 bp):
TTACTAGAAAAGTCATGTTT
Found at i:92662048 original size:27 final size:27
Alignment explanation
Indices: 92662018--92662084 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
92662008 ATACAAATAC
*
92662018 TGTGGTAGAGCCAAAAGAACAGATATT
1 TGTGGCAGAGCCAAAAGAACAGATATT
* **
92662045 TGTGGCATAGCCACCAGAACAGATATT
1 TGTGGCAGAGCCAAAAGAACAGATATT
*
92662072 TGTGGCATAGCCA
1 TGTGGCAGAGCCA
92662085 CCAGAATGCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
TGTGGCAGAGCCAAAAGAACAGATATT
Found at i:92662085 original size:27 final size:27
Alignment explanation
Indices: 92662033--92662090 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
92662023 TAGAGCCAAA
92662033 AGAACAGATATTTGTGGCATAGCCACC
1 AGAACAGATATTTGTGGCATAGCCACC
92662060 AGAACAGATATTTGTGGCATAGCCACC
1 AGAACAGATATTTGTGGCATAGCCACC
92662087 AGAA
1 AGAA
92662091 TGCTTCCTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (27 bp):
AGAACAGATATTTGTGGCATAGCCACC
Found at i:92664198 original size:3 final size:3
Alignment explanation
Indices: 92664190--92664230 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
92664180 TAACATACTA
92664190 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
92664231 CATCCAAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:92664642 original size:27 final size:28
Alignment explanation
Indices: 92664594--92664651 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
92664584 ATAATAAAGA
* *
92664594 GAAATTACTAAAAATGCCCCTAAGGGTG
1 GAAATGACTAAAAATACCCCTAAGGGTG
* *
92664622 GAAATGACT-AAAATACCCCTATGTGTG
1 GAAATGACTAAAAATACCCCTAAGGGTG
92664649 GAA
1 GAA
92664652 TGTAAGATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 18 0.69
28 8 0.31
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (28 bp):
GAAATGACTAAAAATACCCCTAAGGGTG
Found at i:92665564 original size:17 final size:18
Alignment explanation
Indices: 92665531--92665564 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
92665521 TTCAAAGAAG
92665531 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
92665549 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
92665565 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:92672890 original size:42 final size:37
Alignment explanation
Indices: 92672816--92672891 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
92672806 TCGTATAATG
92672816 AAACACATGCACTTTTTATCTTACCCAAGCCTAGCCT
1 AAACACATGCACTTTTTATCTTACCCAAGCCTAGCCT
*
92672853 AAACATATGCACTTTTTATCTTACCCAAGCCTAGCCT
1 AAACACATGCACTTTTTATCTTACCCAAGCCTAGCCT
92672890 AA
1 AA
92672892 CACTTTTCCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.32, C:0.30, G:0.08, T:0.30
Consensus pattern (37 bp):
AAACACATGCACTTTTTATCTTACCCAAGCCTAGCCT
Found at i:92675195 original size:43 final size:44
Alignment explanation
Indices: 92675090--92675196 Score: 130
Period size: 43 Copynumber: 2.5 Consensus size: 44
92675080 AGCGTCCCAG
* *
92675090 ACATGGTCTTAAATGT-AATCAAATATCGATGCCAATGTCCTAG
1 ACATGGTCTTACATGTAAATCAAATATCGATGCCAATGTCCTAA
* * * *
92675133 ATAGGGTCTTACATG-AAATCAAATA-CGATGTCGATGTCCTAA
1 ACATGGTCTTACATGTAAATCAAATATCGATGCCAATGTCCTAA
*
92675175 ACATGGTCTTACACGTAAATCA
1 ACATGGTCTTACATGTAAATCA
92675197 TTAGTCGATG
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 26 0.49
43 27 0.51
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (44 bp):
ACATGGTCTTACATGTAAATCAAATATCGATGCCAATGTCCTAA
Found at i:92676867 original size:40 final size:39
Alignment explanation
Indices: 92676822--92676951 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
92676812 CGGAACATAA
92676822 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
92676862 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
92676902 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
92676942 CCGGATATAA
1 CCGGATATAA
92676952 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:92676966 original size:40 final size:40
Alignment explanation
Indices: 92676838--92676989 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
92676828 ATAACCATGT
* * *
92676838 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
92676878 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
92676918 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
92676958 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
92676990 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:92676972 original size:80 final size:80
Alignment explanation
Indices: 92676838--92676987 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
92676828 ATAACCATGT
*
92676838 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
92676902 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
92676918 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
92676981 CCCGGAT
64 CCCGGAT
92676988 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:92684918 original size:28 final size:29
Alignment explanation
Indices: 92684887--92684942 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
92684877 CTCTTTCATA
*
92684887 TGGCCCATTAGGCCC-ATTCACATTTACG
1 TGGCCCATTAGGCCCAAATCACATTTACG
92684915 TGGCCCATTAGGCCCAAATCACATTTAC
1 TGGCCCATTAGGCCCAAATCACATTTAC
92684943 AGTCATGTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTACG
Found at i:92692100 original size:19 final size:19
Alignment explanation
Indices: 92692073--92692118 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
92692063 TAGGGCACAT
*
92692073 GCCCGTGTGCTTGGGACAC
1 GCCCATGTGCTTGGGACAC
92692092 GCCCATGTGCTTGGGACAC
1 GCCCATGTGCTTGGGACAC
92692111 GCCCATGT
1 GCCCATGT
92692119 CCTGCACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.13, C:0.33, G:0.33, T:0.22
Consensus pattern (19 bp):
GCCCATGTGCTTGGGACAC
Found at i:92693298 original size:46 final size:44
Alignment explanation
Indices: 92693208--92693370 Score: 152
Period size: 46 Copynumber: 3.5 Consensus size: 44
92693198 ATGTCGATGC
92693208 CATGTCCCAGACATGGTCTTACACTGACATGTCTCGTAGCCAATG
1 CATGTCCCAGACAT-GTCTTACACTGACATGTCTCGTAGCCAATG
*
92693253 CATGTCCCAGACATGTCTTACATTTG-CTTATGTCTCG-AGGCCAATG
1 CATGTCCCAGACATGTCTTACA-CTGAC--ATGTCTCGTA-GCCAATG
* * * * *
92693299 CATGCCCCGGACATGTCTTACACTGGCACTCGTCTC-AATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGACA-T-GTCTCGTA-GCCAATG
*
92693345 CCATGTCCCAGACATGGTTTTACACT
1 -CATGTCCCAGACAT-GTCTTACACT
92693371 AGCACACAAA
Statistics
Matches: 99, Mismatches: 9, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
44 10 0.10
45 20 0.20
46 48 0.48
47 12 0.12
48 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACATGTCTCGTAGCCAATG
Found at i:92698118 original size:40 final size:39
Alignment explanation
Indices: 92698072--92698201 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
92698062 CGGAATACAA
92698072 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * *
92698112 TCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
92698152 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
92698192 CCGGATATAA
1 CCGGATATAA
92698202 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.04
40 72 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:92706036 original size:40 final size:39
Alignment explanation
Indices: 92705991--92706120 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
92705981 CGGAATACAA
92705991 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
92706031 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * * *
92706071 CTGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
92706111 CCGGATATAA
1 CCGGATATAA
92706121 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.04
40 72 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:92710913 original size:13 final size:13
Alignment explanation
Indices: 92710897--92710922 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92710887 CTGGACACAC
92710897 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
92710910 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
92710923 CACACGGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.38, G:0.23, T:0.38
Consensus pattern (13 bp):
GCCCGTGTCCTTT
Found at i:92712886 original size:29 final size:29
Alignment explanation
Indices: 92712853--92712917 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
92712843 GTGACGAGAT
92712853 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
92712882 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
92712911 CGGCACT
1 TGGCACT
92712918 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:92725801 original size:18 final size:18
Alignment explanation
Indices: 92725778--92725814 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
92725768 TACAAATTGA
92725778 TAATAGGTTAGGTAAATG
1 TAATAGGTTAGGTAAATG
92725796 TAATAGGTTAGGTAAATG
1 TAATAGGTTAGGTAAATG
92725814 T
1 T
92725815 TCCATGATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.27, T:0.35
Consensus pattern (18 bp):
TAATAGGTTAGGTAAATG
Found at i:92725838 original size:44 final size:43
Alignment explanation
Indices: 92725775--92725890 Score: 151
Period size: 50 Copynumber: 2.5 Consensus size: 43
92725765 TGATACAAAT
92725775 TGATAATAGGTTAGGTAAATGTAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTAATAGGTTAGGTAAATGTT-CA
92725819 TGATAATAGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGT-AA-----ATG-TAATAGGTTAGGTAAATGTTCA
*
92725869 TGATAATGGGTTAGGTAAATGT
1 TGATAATAGGTTAGGTAAATGT
92725891 TTCATGATAA
Statistics
Matches: 64, Mismatches: 1, Indels: 15
0.80 0.01 0.19
Matches are distributed among these distances:
43 1 0.02
44 19 0.30
45 2 0.03
49 2 0.03
50 20 0.31
51 20 0.31
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.35
Consensus pattern (43 bp):
TGATAATAGGTTAGGTAAATGTAATAGGTTAGGTAAATGTTCA
Found at i:92725851 original size:25 final size:25
Alignment explanation
Indices: 92725796--92725925 Score: 217
Period size: 25 Copynumber: 5.1 Consensus size: 25
92725786 TAGGTAAATG
92725796 TAATAGGTTAGGTAAATGTTCCATGA
1 TAATAGGTTAGGTAAATGTT-CATGA
92725822 TAATAGGTTAGGTAAATGTTCATGA
1 TAATAGGTTAGGTAAATGTTCATGA
92725847 TAATAGGTTAGGTAAATGTTCATGA
1 TAATAGGTTAGGTAAATGTTCATGA
*
92725872 TAATGGGTTAGGTAAATGTTTCATGA
1 TAATAGGTTAGGTAAATG-TTCATGA
92725898 TAAT-GGTTAGGTAAATGTTTCATGA
1 TAATAGGTTAGGTAAATG-TTCATGA
92725923 TAA
1 TAA
92725926 GAATTTCATG
Statistics
Matches: 102, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
25 71 0.70
26 31 0.30
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (25 bp):
TAATAGGTTAGGTAAATGTTCATGA
Found at i:92725851 original size:51 final size:51
Alignment explanation
Indices: 92725796--92725925 Score: 219
Period size: 51 Copynumber: 2.5 Consensus size: 51
92725786 TAGGTAAATG
92725796 TAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATG-TTCATGA
1 TAATAGGTTAGGTAAATGTT-CATGATAATAGGTTAGGTAAATGTTTCATGA
*
92725847 TAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCATGA
1 TAATAGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTTCATGA
92725898 TAAT-GGTTAGGTAAATGTTTCATGATAA
1 TAATAGGTTAGGTAAATG-TTCATGATAA
92725926 GAATTTCATG
Statistics
Matches: 76, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
50 35 0.46
51 41 0.54
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (51 bp):
TAATAGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTTCATGA
Found at i:92729744 original size:42 final size:42
Alignment explanation
Indices: 92729685--92729768 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
92729675 AGTAGTGTTA
92729685 ATGTTTCCTCTTTTTCTTCTTTAGACTCTGACGCTGAATTAT
1 ATGTTTCCTCTTTTTCTTCTTTAGACTCTGACGCTGAATTAT
*
92729727 ATGTTTCCTCTTTTTCTTCTTTAGACTCTGACGTTGAATTAT
1 ATGTTTCCTCTTTTTCTTCTTTAGACTCTGACGCTGAATTAT
92729769 CTACTTGTGG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.17, C:0.20, G:0.12, T:0.51
Consensus pattern (42 bp):
ATGTTTCCTCTTTTTCTTCTTTAGACTCTGACGCTGAATTAT
Found at i:92736715 original size:22 final size:22
Alignment explanation
Indices: 92736687--92736757 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 22
92736677 TATTATGAAA
92736687 ATAAATTAAATAAGGAATACAT
1 ATAAATTAAATAAGGAATACAT
* * *
92736709 ATAAATTATTATTATG-A-A-A-
1 ATAAATTA-AATAAGGAATACAT
*
92736728 ATAAATTAAATAAGGAATACGT
1 ATAAATTAAATAAGGAATACAT
92736750 ATAAATTA
1 ATAAATTA
92736758 TGTTCCTTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
18 4 0.11
19 9 0.24
20 2 0.05
21 1 0.03
22 17 0.46
23 4 0.11
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.32
Consensus pattern (22 bp):
ATAAATTAAATAAGGAATACAT
Found at i:92736728 original size:41 final size:41
Alignment explanation
Indices: 92736676--92736758 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
92736666 TCTCGTTTCT
92736676 TTATTATGAAAATAAATTAAATAAGGAATACATATAAATTA
1 TTATTATGAAAATAAATTAAATAAGGAATACATATAAATTA
*
92736717 TTATTATGAAAATAAATTAAATAAGGAATACGTATAAATTA
1 TTATTATGAAAATAAATTAAATAAGGAATACATATAAATTA
92736758 T
1 T
92736759 GTTCCTTAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.35
Consensus pattern (41 bp):
TTATTATGAAAATAAATTAAATAAGGAATACATATAAATTA
Found at i:92737343 original size:38 final size:38
Alignment explanation
Indices: 92737300--92737430 Score: 154
Period size: 38 Copynumber: 3.2 Consensus size: 38
92737290 TTTCAAATTA
92737300 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* *
92737338 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
*
92737379 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
92737423 ACATGTAT
1 ACATGTAT
92737431 CAATATGTGT
Statistics
Matches: 78, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
38 35 0.45
39 1 0.01
40 4 0.05
41 2 0.03
42 1 0.01
43 1 0.01
44 2 0.03
45 3 0.04
46 1 0.01
47 28 0.36
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:92737454 original size:48 final size:48
Alignment explanation
Indices: 92737340--92737478 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
92737330 ACCACGTTAC
* *
92737340 ATGTTTAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
92737387 ATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * * *
92737435 ATGTGTAATCGTGGTATATCAACTTAGTACCACGTTACACGTAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
92737479 AACCATGGTA
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 34 0.42
48 47 0.58
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:92750404 original size:27 final size:27
Alignment explanation
Indices: 92750347--92750404 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
92750337 TAGAAAAGGT
* * * *
92750347 CTCTTATTGAGTATTCCCTGATAACTT
1 CTCTTATCGAGTATTCCATGAGAACTA
* *
92750374 CTCTTATCGAGTATTCTATGAGAGCTA
1 CTCTTATCGAGTATTCCATGAGAACTA
92750401 CTCT
1 CTCT
92750405 CTGTTGAAAG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.41
Consensus pattern (27 bp):
CTCTTATCGAGTATTCCATGAGAACTA
Found at i:92757588 original size:48 final size:50
Alignment explanation
Indices: 92757452--92757591 Score: 173
Period size: 48 Copynumber: 2.9 Consensus size: 50
92757442 AACGTAGTAG
* *
92757452 GATGCCAATGCCATATCCCAGATATGGTCTTACA-AGGGAT--TACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATA-GGATCGTACATATC
** * *
92757500 GATGCCAATGCCATGTCCCAGACATGGTCTTATGTGGGATCGTAGAT-T-
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCGTACATATC
*
92757548 GATGCCAATTCCATGTCCCAGACATGGTCTTACATAGGATCGTA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCGTA
92757592 TATAACTCTA
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
48 74 0.94
49 1 0.01
50 4 0.05
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (50 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCGTACATATC
Found at i:92762330 original size:44 final size:44
Alignment explanation
Indices: 92762257--92762584 Score: 253
Period size: 44 Copynumber: 7.1 Consensus size: 44
92762247 TTATCTCTCT
* ** * *
92762257 GTGGAACAGATTAAAGCCACAAATTTTATCTCTCTGAAGTTGCA
1 GTGGAACAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCA
* * *
92762301 G-GGTAATAGATTGAAGATACAAATCTTATCTCCCTAAAGTTGAA
1 GTGG-AACAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCA
** * * * *
92762345 GTGGAGTAGATTGAAGATGCGAATCTTATTTTCCTGAAGTTGCA
1 GTGGAACAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCA
* *
92762389 GTAGAACATATTGAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTGCA
1 GTGGAACAGATTGAAG-----A--TACAAATCTTATCTCCCTGAAGTTGCA
** * * * * *
92762440 GTGGAGGAGATAGAAGATGCGAATCTTATCTCCCTGATGTTGTA
1 GTGGAACAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCA
*
92762484 GTGGAAAAGATTGAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTGCA
1 GTGGAACAGATTGAAG-----A--TACAAATCTTATCTCCCTGAAGTTGCA
* * * * *
92762535 GTGGAGCATATTGAAGATACGAATCTTATTTCCCTGAAGTTGTA
1 GTGGAACAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCA
92762579 GTGGAA
1 GTGGAA
92762585 TATATTAAAG
Statistics
Matches: 222, Mismatches: 46, Indels: 32
0.74 0.15 0.11
Matches are distributed among these distances:
43 2 0.01
44 144 0.65
45 2 0.01
46 2 0.01
49 2 0.01
51 70 0.32
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (44 bp):
GTGGAACAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCA
Found at i:92762443 original size:95 final size:95
Alignment explanation
Indices: 92762318--92762678 Score: 445
Period size: 95 Copynumber: 3.8 Consensus size: 95
92762308 AGATTGAAGA
* * * * * *
92762318 TACAAATCTTATCTCCCTAAAGTTGAAGTGGAGTAGATTGAAGATGCGAATCTTATTTTCCTGAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGAATCTTATCTCCCTGAA
*
92762383 GTTGCAGTAGAACATATTGAAGCTACAAGT
66 GTTGCAGTAGAAAATATTGAAGCTACAAGT
* * * *
92762413 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGGAGATAGAAGATGCGAATCTTATCTCCCTGAT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGAATCTTATCTCCCTGAA
* * *
92762478 GTTGTAGTGGAAAAGATTGAAGCTACAAGT
66 GTTGCAGTAGAAAATATTGAAGCTACAAGT
* *
92762508 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAGATACGAATCTTATTTCCCTGAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGAATCTTATCTCCCTGAA
* * * * *
92762573 GTTGTAGTGGAATATATTAAAGCTACGAGT
66 GTTGCAGTAGAAAATATTGAAGCTACAAGT
* * * * * * *
92762603 TACGAATCTTGT-TTCTTGGAAGTTGCAGTGGAGCAGATTGAAGTTACTAATCTTATCTCCCTAA
1 TACAAATCTTATCTCCCT-GAAGTTGCAGTGGAGCAGATTGAAGATACGAATCTTATCTCCCTGA
*
92762667 AGTTACAGTAGA
65 AGTTGCAGTAGA
92762679 GTAGATTAAA
Statistics
Matches: 232, Mismatches: 33, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
94 3 0.01
95 229 0.99
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (95 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGAATCTTATCTCCCTGAA
GTTGCAGTAGAAAATATTGAAGCTACAAGT
Found at i:92762538 original size:51 final size:50
Alignment explanation
Indices: 92762364--92762645 Score: 221
Period size: 51 Copynumber: 5.8 Consensus size: 50
92762354 ATTGAAGATG
* * * *
92762364 CGAATCTTATTTTCCTGAAGTTGCAGTAGAACATATTGAAGCTACAAGTTA
1 CGAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAC-AGTTA
* ** * *
92762415 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGGAGA-T--AG--A-AGATG
1 CGAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTACAGTTA
* * *
92762459 CGAATCTTATCTCCCTGATGTTGTAGTGGAAAAGATTGAAGCTACAAGTTA
1 CGAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAC-AGTTA
* * *
92762510 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAG----A--TA
1 CGAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTACAGTTA
* * * * *
92762554 CGAATCTTATTTCCCTGAAGTTGTAGTGGAATATATTAAAGCTACGAGTTA
1 CGAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAC-AGTTA
* * * *
92762605 CGAATCTTGT-TTCTTGGAAGTTGCAGTGGAGCAGATTGAAG
1 CGAATCTTATCTCCCT-GAAGTTGCAGTGGAACAGATTGAAG
92762646 TTACTAATCT
Statistics
Matches: 180, Mismatches: 36, Indels: 30
0.73 0.15 0.12
Matches are distributed among these distances:
44 70 0.39
45 1 0.01
46 2 0.01
47 2 0.01
48 2 0.01
49 2 0.01
50 4 0.02
51 97 0.54
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (50 bp):
CGAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTACAGTTA
Found at i:92762590 original size:44 final size:44
Alignment explanation
Indices: 92762512--92762600 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
92762502 ACAAGTTACA
* *
92762512 AATCTTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAGATACG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACATATTAAAGATACG
* * * *
92762556 AATCTTATTTCCCTGAAGTTGTAGTGGAATATATTAAAGCTACG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACATATTAAAGATACG
92762600 A
1 A
92762601 GTTACGAATC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACATATTAAAGATACG
Found at i:92762657 original size:190 final size:190
Alignment explanation
Indices: 92762318--92762664 Score: 498
Period size: 190 Copynumber: 1.8 Consensus size: 190
92762308 AGATTGAAGA
* * *
92762318 TACAAATCTTATCTCCCTAAAGTTGAAGTGGAGTAGATTGAAGATGCGAATCTTATTTTCCTGAA
1 TACAAATCTTATCTCCCTAAAGTTGAAGTGGAGCAGATTGAAGATACGAATCTTATTTCCCTGAA
* *
92762383 GTTGCAGTAGAACATATTGAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGGA
66 GTTGCAGTAGAACATATTAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
*
92762448 GATAGAAGATGCGAATCTTATCTCCCTGATGTTGTAGTGGAAAAGATTGAAGCTACAAGT
131 GATAGAAGATACGAATCTTATCTCCCTGATGTTGTAGTGGAAAAGATTGAAGCTACAAGT
* * *
92762508 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAGATACGAATCTTATTTCCCTGAA
1 TACAAATCTTATCTCCCTAAAGTTGAAGTGGAGCAGATTGAAGATACGAATCTTATTTCCCTGAA
* * * * * * * *
92762573 GTTGTAGTGGAATATATTAAAGCTACGAGTTACGAATCTTGT-TTCTTGGAAGTTGCAGTGGAGC
66 GTTGCAGTAGAACATATTAAAGCTACAAGTTACAAATCTTATCTCCCT-GAAGTTGCAGTGGAGC
* * *
92762637 AGATTGAAGTTACTAATCTTATCTCCCT
130 AGATAGAAGATACGAATCTTATCTCCCT
92762665 AAAGTTACAG
Statistics
Matches: 136, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
189 3 0.02
190 133 0.98
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (190 bp):
TACAAATCTTATCTCCCTAAAGTTGAAGTGGAGCAGATTGAAGATACGAATCTTATTTCCCTGAA
GTTGCAGTAGAACATATTAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
GATAGAAGATACGAATCTTATCTCCCTGATGTTGTAGTGGAAAAGATTGAAGCTACAAGT
Found at i:92764250 original size:3 final size:3
Alignment explanation
Indices: 92764236--92764274 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
92764226 TATTCGTTAA
* *
92764236 TAT TAA TAT TAT TAT TAT GAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
92764275 AGTTAACCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:92765750 original size:23 final size:22
Alignment explanation
Indices: 92765715--92765757 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
92765705 TAGTTTTGGA
* *
92765715 TTTGATTTATTTATTTATATAT
1 TTTGAGTTATTTATTAATATAT
92765737 TTTGAGTTACTTTATTAATAT
1 TTTGAGTTA-TTTATTAATAT
92765758 GTAAATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (22 bp):
TTTGAGTTATTTATTAATATAT
Found at i:92765792 original size:11 final size:10
Alignment explanation
Indices: 92765765--92765794 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
92765755 TATGTAAATA
92765765 TTTATTTATT
1 TTTATTTATT
92765775 TTTATTTATT
1 TTTATTTATT
92765785 TTTCATTTAT
1 TTT-ATTTAT
92765795 ATTATTTGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 13 0.68
11 6 0.32
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTATTTATT
Found at i:92766443 original size:32 final size:33
Alignment explanation
Indices: 92766407--92766469 Score: 78
Period size: 31 Copynumber: 1.9 Consensus size: 33
92766397 GACATATAAT
92766407 TATTTCTAACATT-TTTTCAC-AT-GTATATGTCA
1 TATTT-TAA-ATTATTTTCACTATGGTATATGTCA
*
92766439 TATTTTAAATTATTTTTACTATGGTATATGT
1 TATTTTAAATTATTTTCACTATGGTATATGT
92766470 TATTATCTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
30 3 0.11
31 9 0.33
32 7 0.26
33 8 0.30
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.54
Consensus pattern (33 bp):
TATTTTAAATTATTTTCACTATGGTATATGTCA
Found at i:92777897 original size:53 final size:49
Alignment explanation
Indices: 92777756--92777904 Score: 135
Period size: 53 Copynumber: 2.9 Consensus size: 49
92777746 AGGGAAGCCA
* * * *
92777756 AAGTGAAAACCCGCAAAGGGCGCTTTGAGGCTTTCGAA-AAAAAAAAGGCTT
1 AAGTGAAAACCCGCAAAGGGCACTTTGAGAC--TCAAATAAAAAAAAGGC-C
*
92777807 AAGTGAAAACCCGCAAATGGCACTTT-AGGAC-CAAATAAAAATGGAAAGGGCC
1 AAGTGAAAACCCGCAAAGGGCACTTTGA-GACTCAAATAAAAA---AAA-GGCC
*
92777859 AAGGTGAAAACCCGCAAAGGGCACTTTGAGACTC-AATAATAAAAAG
1 AA-GTGAAAACCCGCAAAGGGCACTTTGAGACTCAAATAAAAAAAAG
92777905 AAAAAAGAGA
Statistics
Matches: 82, Mismatches: 7, Indels: 20
0.75 0.06 0.18
Matches are distributed among these distances:
48 3 0.04
49 6 0.07
50 4 0.05
51 26 0.32
52 5 0.06
53 36 0.44
54 2 0.02
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.15
Consensus pattern (49 bp):
AAGTGAAAACCCGCAAAGGGCACTTTGAGACTCAAATAAAAAAAAGGCC
Found at i:92779262 original size:101 final size:101
Alignment explanation
Indices: 92779087--92779296 Score: 375
Period size: 101 Copynumber: 2.1 Consensus size: 101
92779077 GCAATGGAGC
* *
92779087 AGATTTTACCACCAAACCTTGTCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTATGAGTTTTAT
1 AGATTTTACCACCAAACCTTGTCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGTATGAGTCTTAT
*
92779152 CTTCCTGAGGTAGCAAGGAAGTAGACTGAGAATGGA
66 CTTCCTGAGGTAGCAAGGAAGCAGACTGAGAATGGA
*
92779188 AGATTTTACCACCAAACCTTGTCTCTCTAAGGTAGCAAGAGAGTAGGTTGAAGTATGAGTCTTAT
1 AGATTTTACCACCAAACCTTGTCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGTATGAGTCTTAT
*
92779253 CTTCCTGAGGTAGCAAGGAAGCAGACTGAGAATTGA
66 CTTCCTGAGGTAGCAAGGAAGCAGACTGAGAATGGA
92779289 AGATTTTA
1 AGATTTTA
92779297 TCTCCCTAAA
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 104 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (101 bp):
AGATTTTACCACCAAACCTTGTCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGTATGAGTCTTAT
CTTCCTGAGGTAGCAAGGAAGCAGACTGAGAATGGA
Found at i:92781176 original size:32 final size:33
Alignment explanation
Indices: 92781140--92781202 Score: 78
Period size: 31 Copynumber: 1.9 Consensus size: 33
92781130 GACATATAAT
92781140 TATTTCTAACATT-TTTTCAC-AT-GTATATGTCA
1 TATTT-TAA-ATTATTTTCACTATGGTATATGTCA
*
92781172 TATTTTAAATTATTTTTACTATGGTATATGT
1 TATTTTAAATTATTTTCACTATGGTATATGT
92781203 TATTATCTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
30 3 0.11
31 9 0.33
32 7 0.26
33 8 0.30
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.54
Consensus pattern (33 bp):
TATTTTAAATTATTTTCACTATGGTATATGTCA
Found at i:92781357 original size:22 final size:22
Alignment explanation
Indices: 92781316--92781357 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
92781306 ATTTACTGTA
*
92781316 TTTCATATTATCTTTATGTTTT
1 TTTCATATTATATTTATGTTTT
92781338 TTTCATATATATATTT-TGTT
1 TTTCATAT-TATATTTATGTT
92781358 ACTCATACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.21, C:0.07, G:0.05, T:0.67
Consensus pattern (22 bp):
TTTCATATTATATTTATGTTTT
Found at i:92782577 original size:26 final size:26
Alignment explanation
Indices: 92782548--92782655 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
92782538 TGGTACAAAT
92782548 TGATAATGTG-TTAGGTAAATGTTCCA
1 TGATAATG-GATTAGGTAAATGTTCCA
*
92782574 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
92782600 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
92782626 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
92782652 TGAT
1 TGAT
92782656 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 1 0.01
26 76 0.99
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:92782876 original size:20 final size:20
Alignment explanation
Indices: 92782851--92782898 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
92782841 GTTTGCTTCT
92782851 ATCTTGATGTTCATGAGTTC
1 ATCTTGATGTTCATGAGTTC
92782871 ATCTTGATGTTCATGAGTTC
1 ATCTTGATGTTCATGAGTTC
*
92782891 TTCTTGAT
1 ATCTTGAT
92782899 TCTACCTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.19, C:0.15, G:0.19, T:0.48
Consensus pattern (20 bp):
ATCTTGATGTTCATGAGTTC
Found at i:92790818 original size:2 final size:2
Alignment explanation
Indices: 92790811--92790847 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
92790801 GTAAAACTGG
92790811 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
92790848 CATTTATTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:92803334 original size:25 final size:25
Alignment explanation
Indices: 92803300--92803348 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
92803290 ATGATTGTAT
92803300 GTGTATGCCTTAGTAGTACCCATCA
1 GTGTATGCCTTAGTAGTACCCATCA
92803325 GTGTATGCCTTAGTAGTACCCATC
1 GTGTATGCCTTAGTAGTACCCATC
92803349 GACTGAACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (25 bp):
GTGTATGCCTTAGTAGTACCCATCA
Found at i:92805149 original size:16 final size:16
Alignment explanation
Indices: 92805130--92805163 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
92805120 ATAAATAAAT
92805130 AAATAAGAATAATAAG
1 AAATAAGAATAATAAG
* *
92805146 AAATAATACTAATAAG
1 AAATAAGAATAATAAG
92805162 AA
1 AA
92805164 TGAAATAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.21
Consensus pattern (16 bp):
AAATAAGAATAATAAG
Found at i:92805160 original size:40 final size:42
Alignment explanation
Indices: 92805089--92805176 Score: 103
Period size: 40 Copynumber: 2.1 Consensus size: 42
92805079 GCTAAAACAG
*
92805089 AATAA-AATAATAAGAACAAAATAGTAAAATAATAAAT-AAATA
1 AATAAGAATAATAAGAACAAAATACT-AAATAA-AAATGAAATA
* *
92805131 AATAAGAATAATAAGAA-ATAATACT-AATAAGAATGAAATA
1 AATAAGAATAATAAGAACAAAATACTAAATAAAAATGAAATA
92805171 AATAAG
1 AATAAG
92805177 TAAAAATGGA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
39 3 0.07
40 16 0.39
42 11 0.27
43 11 0.27
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (42 bp):
AATAAGAATAATAAGAACAAAATACTAAATAAAAATGAAATA
Found at i:92820426 original size:22 final size:23
Alignment explanation
Indices: 92820401--92820446 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
92820391 CAACCAAACC
92820401 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
92820423 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
92820446 A
1 A
92820447 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:92820452 original size:23 final size:23
Alignment explanation
Indices: 92820408--92820452 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
92820398 ACCAATTCAA
*
92820408 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
92820431 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
92820453 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:92836220 original size:39 final size:40
Alignment explanation
Indices: 92836124--92836301 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
92836114 GCTCGATTGT
* * * *
92836124 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
*
92836164 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCAC-AATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
92836203 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
92836243 CTTCGGGACTTA-CCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCACAAATGC
92836283 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
92836302 CACATTCGAA
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 46 0.38
40 66 0.55
41 8 0.07
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:92836220 original size:79 final size:80
Alignment explanation
Indices: 92836124--92836300 Score: 232
Period size: 79 Copynumber: 2.2 Consensus size: 80
92836114 GCTCGATTGT
* * * *
92836124 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAGT
* *
92836189 AAC-TCGCAC-AATGC
65 AACTTAGCACAAAAGC
* * * * *
92836203 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTACCCGGATTTAGTC
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTA
92836268 ACTTAGCACAAAAGC
66 ACTTAGCACAAAAGC
92836283 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
92836301 ACACATTCGA
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
78 14 0.17
79 49 0.58
80 21 0.25
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTA
ACTTAGCACAAAAGC
Found at i:92844188 original size:40 final size:40
Alignment explanation
Indices: 92844144--92844319 Score: 192
Period size: 40 Copynumber: 4.4 Consensus size: 40
92844134 GCTCGATTGT
* * * * * *
92844144 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGATTTTAGTAACTCGCACAAATGC
* *
92844184 CTTCGGGAATTAGCCCGA-TTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGATTTTAGTAACTCGCACAAATGC
* *
92844223 CTTCGGGACTTAACCCGATTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGATTTTAGTAACTCGCACAAATGC
* * * * * *
92844263 CTTCGGGACTTAACCCGGTTTTGGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGATTTTAGTAAC-TCGCACAAATGC
92844304 CTTCGGGACTTAGCCC
1 CTTCGGGACTTAGCCC
92844320 CGACACCATT
Statistics
Matches: 117, Mismatches: 17, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
39 32 0.27
40 60 0.51
41 25 0.21
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGATTTTAGTAACTCGCACAAATGC
Found at i:92854771 original size:22 final size:22
Alignment explanation
Indices: 92854709--92854784 Score: 73
Period size: 24 Copynumber: 3.3 Consensus size: 22
92854699 TACCGATATA
*
92854709 TCAGCTCGTAAGAGCTTACTGTT
1 TCAGCTCGTTAGAGCTTACTG-T
* *
92854732 CTCAGCTTG-TATGGGCTTACTGT
1 -TCAGCTCGTTA-GAGCTTACTGT
*
92854755 TCAGCTCGTTAGAGCTTACTATT
1 TCAGCTCGTTAGAGCTTACT-GT
92854778 TCAGCTC
1 TCAGCTC
92854785 AATGCTTACT
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
22 15 0.35
23 12 0.28
24 16 0.37
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (22 bp):
TCAGCTCGTTAGAGCTTACTGT
Found at i:92854968 original size:19 final size:20
Alignment explanation
Indices: 92854925--92854968 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
92854915 GCATAAATTT
* *
92854925 TGTTTATATGGATGAAGTAA
1 TGTTTATACGAATGAAGTAA
*
92854945 TGTTTATACGAATG-AGTTA
1 TGTTTATACGAATGAAGTAA
92854964 TGTTT
1 TGTTT
92854969 TCAAATGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.45
Consensus pattern (20 bp):
TGTTTATACGAATGAAGTAA
Found at i:92859597 original size:40 final size:40
Alignment explanation
Indices: 92859552--92859719 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
92859542 CGGAATATAA
92859552 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
92859592 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
92859632 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
92859672 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
92859712 CCGGATAT
1 CCGGATAT
92859720 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:92859702 original size:80 final size:80
Alignment explanation
Indices: 92859568--92859717 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
92859558 ATAACCACGT
* *
92859568 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
92859633 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
92859648 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
92859711 CCCGGAT
64 CCCGGAT
92859718 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:92867604 original size:40 final size:40
Alignment explanation
Indices: 92867559--92867725 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
92867549 CGGAATATAA
92867559 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
92867599 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
92867639 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
92867679 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
92867718 CCGGATAT
1 CCGGATAT
92867726 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:92867709 original size:80 final size:79
Alignment explanation
Indices: 92867575--92867723 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
92867565 ATAACCACGT
*
92867575 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
92867640 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
92867655 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
92867718 CCGGAT
64 CCGGAT
92867724 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:92872430 original size:13 final size:13
Alignment explanation
Indices: 92872412--92872436 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92872402 GTGACACTAT
92872412 AAGAAAAAGGGAA
1 AAGAAAAAGGGAA
92872425 AAGAAAAAGGGA
1 AAGAAAAAGGGA
92872437 GTAAGCTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (13 bp):
AAGAAAAAGGGAA
Found at i:92872813 original size:30 final size:30
Alignment explanation
Indices: 92872779--92872841 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
92872769 TTATATGGGA
92872779 TCTCGTATCATGCCAATAGCCCAGCTATGG
1 TCTCGTATCATGCCAATAGCCCAGCTATGG
92872809 TCTCGTATCATGCCAATAGCCCAGCTATGG
1 TCTCGTATCATGCCAATAGCCCAGCTATGG
92872839 TCT
1 TCT
92872842 TACAGAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (30 bp):
TCTCGTATCATGCCAATAGCCCAGCTATGG
Found at i:92872881 original size:42 final size:42
Alignment explanation
Indices: 92872818--92872930 Score: 120
Period size: 42 Copynumber: 2.7 Consensus size: 42
92872808 GTCTCGTATC
* *
92872818 ATGCCAATAGCCCAGCTATGGTCTTACA-GAAAATCTCACATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAAA-CTCACATCG
* * * *
92872861 ATGCCATATCCTAGATATGGTCTTACACGAAGACTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAAACTCACATCG
* * *
92872903 ATTCCGTATCCCAGATAAGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
92872931 ATAGTCTCAC
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 50 0.85
43 9 0.15
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAAACTCACATCG
Found at i:92875730 original size:68 final size:67
Alignment explanation
Indices: 92875658--92875807 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
92875648 CATCATGTGT
* * * *
92875658 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
92875720 ATGTAG
62 ATGTAG
** * *
92875726 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
92875791 AG
66 AG
92875793 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
92875808 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Done.