Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 305 of 770
Found at i:93196779 original size:15 final size:15
Alignment explanation
Indices: 93196761--93196815 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
93196751 ATTTGCATTA
*
93196761 ATTTATTTAAATATT
1 ATTTAATTAAATATT
93196776 ATTTAATTAGAATAATT
1 ATTTAATTA-AAT-ATT
93196793 -TTT-A-TAAATATT
1 ATTTAATTAAATATT
93196805 ATTTAATTAAA
1 ATTTAATTAAA
93196816 ATAAATTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 3 0.09
13 6 0.18
14 3 0.09
15 13 0.38
16 6 0.18
17 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
ATTTAATTAAATATT
Found at i:93196792 original size:29 final size:29
Alignment explanation
Indices: 93196759--93196825 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
93196749 TAATTTGCAT
*
93196759 TAATTTATT-TAAATATTATTTAATTAGAA
1 TAATTT-TTATAAATATTATTTAATTAAAA
93196788 TAATTTTTATAAATATTATTTAATTAAAA
1 TAATTTTTATAAATATTATTTAATTAAAA
93196817 TAAATTTTT
1 T-AATTTTT
93196826 TCCAGGTGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
28 2 0.06
29 26 0.74
30 7 0.20
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (29 bp):
TAATTTTTATAAATATTATTTAATTAAAA
Found at i:93197013 original size:9 final size:9
Alignment explanation
Indices: 93196999--93197224 Score: 105
Period size: 9 Copynumber: 25.8 Consensus size: 9
93196989 TACATGATAT
93196999 CATAACTTA
1 CATAACTTA
93197008 CATAACTTA
1 CATAACTTA
93197017 CATAA--TA
1 CATAACTTA
*
93197024 CATAA-ATA
1 CATAACTTA
* * *
93197032 TATATCATA
1 CATAACTTA
*
93197041 TGATAACTTA
1 -CATAACTTA
**
93197051 TGTAACTTA
1 CATAACTTA
93197060 CATAACTTA
1 CATAACTTA
93197069 CATAA--TA
1 CATAACTTA
*
93197076 CATAA-ATA
1 CATAACTTA
* *
93197084 TATATCATATA
1 CATAAC-T-TA
93197095 -ATAACTTA
1 CATAACTTA
93197103 CATAACTTA
1 CATAACTTA
93197112 CATAACTTA
1 CATAACTTA
*
93197121 CGTAA--TA
1 CATAACTTA
*
93197128 CATAA-ATA
1 CATAACTTA
* ** *
93197136 TATTTCATA
1 CATAACTTA
*
93197145 TCATAATTTA
1 -CATAACTTA
93197155 CATAACTTA
1 CATAACTTA
*
93197164 CATACCTTA
1 CATAACTTA
*
93197173 CATAAATT-
1 CATAACTTA
* * *
93197181 TATATCATA
1 CATAACTTA
*
93197190 TCATAGCTTA
1 -CATAACTTA
93197200 CATAACTTA
1 CATAACTTA
*
93197209 CAAAACTTA
1 CATAACTTA
*
93197218 CTTAACT
1 CATAACT
93197225 CACGTAATAC
Statistics
Matches: 166, Mismatches: 38, Indels: 26
0.72 0.17 0.11
Matches are distributed among these distances:
7 20 0.12
8 20 0.12
9 104 0.63
10 20 0.12
11 2 0.01
ACGTcount: A:0.45, C:0.17, G:0.02, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:93197058 original size:52 final size:52
Alignment explanation
Indices: 93196999--93197243 Score: 298
Period size: 52 Copynumber: 4.7 Consensus size: 52
93196989 TACATGATAT
*
93196999 CATAACTTACATAACTTACATAATACATAAATATATATCATATGATAACTTA
1 CATAACTTACATAACTTACATAATACATAAATATATATCATATAATAACTTA
**
93197051 TGTAACTTACATAACTTACATAATACATAAATATATATCATATAATAACTTA
1 CATAACTTACATAACTTACATAATACATAAATATATATCATATAATAACTTA
* * * *
93197103 CATAACTTACATAACTTACGTAATACATAAATATATTTCATATCATAATTTA
1 CATAACTTACATAACTTACATAATACATAAATATATATCATATAATAACTTA
* **
93197155 CATAACTTACATACCTTACAT-A-A-ATTTATATCATATCATAGCTTACATAACTTA
1 CATAACTTACATAACTTACATAATACATAAATAT-ATATCATA---TA-ATAACTTA
* * * *
93197209 CAAAACTTACTTAACTCACGTAATACATAAATATA
1 CATAACTTACATAACTTACATAATACATAAATATA
93197244 CACTTGAAAA
Statistics
Matches: 162, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
49 6 0.04
50 8 0.05
51 1 0.01
52 114 0.70
53 1 0.01
54 23 0.14
55 1 0.01
56 2 0.01
57 6 0.04
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.36
Consensus pattern (52 bp):
CATAACTTACATAACTTACATAATACATAAATATATATCATATAATAACTTA
Found at i:93197190 original size:45 final size:43
Alignment explanation
Indices: 93197061--93197210 Score: 147
Period size: 45 Copynumber: 3.2 Consensus size: 43
93197051 TGTAACTTAC
93197061 ATAACTTACATAATACATAAATATATATCATATAATAACTTACATAACTTAC
1 ATAACTTACATAATACATAAATATATATC-----AT-A--T-CATAACTTAC
* * *
93197113 ATAACTTACGTAATACATAAATATATTTCATATCATAATTTAC
1 ATAACTTACATAATACATAAATATATATCATATCATAACTTAC
* * *
93197156 ATAACTTACATACCTTACATAAATTTATATCATATCATAGCTTAC
1 ATAACTTACATA--ATACATAAATATATATCATATCATAACTTAC
93197201 ATAACTTACA
1 ATAACTTACA
93197211 AAACTTACTT
Statistics
Matches: 87, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
43 20 0.23
44 1 0.01
45 36 0.41
46 1 0.01
47 2 0.02
52 27 0.31
ACGTcount: A:0.45, C:0.17, G:0.01, T:0.37
Consensus pattern (43 bp):
ATAACTTACATAATACATAAATATATATCATATCATAACTTAC
Found at i:93197218 original size:45 final size:45
Alignment explanation
Indices: 93197103--93197218 Score: 155
Period size: 45 Copynumber: 2.6 Consensus size: 45
93197093 TAATAACTTA
* *
93197103 CATAACTTACATAACTTACGTAA--TACATAAATATATTTCATAT
1 CATAACTTACATAACTTACATAACTTACATAAATATATATCATAT
* * *
93197146 CATAATTTACATAACTTACATACCTTACATAAATTTATATCATAT
1 CATAACTTACATAACTTACATAACTTACATAAATATATATCATAT
* *
93197191 CATAGCTTACATAACTTACAAAACTTAC
1 CATAACTTACATAACTTACATAACTTAC
93197219 TTAACTCACG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 20 0.32
45 42 0.68
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.36
Consensus pattern (45 bp):
CATAACTTACATAACTTACATAACTTACATAAATATATATCATAT
Found at i:93202592 original size:13 final size:14
Alignment explanation
Indices: 93202576--93202604 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93202566 TTATAAATAT
93202576 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
93202589 TTATAATGGTTTAA
1 TTATAATGGTTTAA
93202603 TT
1 TT
93202605 CATCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:93203321 original size:33 final size:33
Alignment explanation
Indices: 93203279--93203360 Score: 114
Period size: 31 Copynumber: 2.5 Consensus size: 33
93203269 TTAGATTTAA
* * *
93203279 TGTTTTTGGTTGTATTTTTTATGCTACCTTTGC
1 TGTTTTTGGTTGGATTTTTCATGCTACATTTGC
*
93203312 TGTTTTTGGTTGGA--TTTCATGCTATATTTGC
1 TGTTTTTGGTTGGATTTTTCATGCTACATTTGC
93203343 TGTTTTTGGTTGGATTTT
1 TGTTTTTGGTTGGATTTT
93203361 AATACAGGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
31 28 0.65
33 15 0.35
ACGTcount: A:0.10, C:0.09, G:0.22, T:0.60
Consensus pattern (33 bp):
TGTTTTTGGTTGGATTTTTCATGCTACATTTGC
Found at i:93222043 original size:29 final size:29
Alignment explanation
Indices: 93221953--93222043 Score: 112
Period size: 29 Copynumber: 3.1 Consensus size: 29
93221943 TGCCTGTATC
* * *
93221953 TGGCCCATTATGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * *
93221981 TGGGCCCTTTAGGCCCAAATCACCTGTATA
1 T-GGCCCATTAGGCCCAAATCACATTTATA
93222011 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
93222040 TGGC
1 TGGC
93222044 TCGTTAGACT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
28 1 0.02
29 41 0.79
30 10 0.19
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:93222303 original size:16 final size:16
Alignment explanation
Indices: 93222279--93222321 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
93222269 ATAGCCAAAC
*
93222279 TTTCGGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
93222295 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
93222311 TTTCAACTTTT
1 TTTCAGCTTTT
93222322 ACCGATTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.12, C:0.23, G:0.16, T:0.49
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:93227837 original size:26 final size:26
Alignment explanation
Indices: 93227769--93227839 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
93227759 CGGTCACCTA
*
93227769 TTCTCTCCCTTGCTGAATTCTTTTAC
1 TTCTCTCCCTTGCCGAATTCTTTTAC
* * * *
93227795 TTTTCTCCTTTGTCGAATTCTTTTTC
1 TTCTCTCCCTTGCCGAATTCTTTTAC
*
93227821 TTCTCTCCCTTCCCGAATT
1 TTCTCTCCCTTGCCGAATT
93227840 TGTTTGCTGC
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.10, C:0.31, G:0.07, T:0.52
Consensus pattern (26 bp):
TTCTCTCCCTTGCCGAATTCTTTTAC
Found at i:93231056 original size:40 final size:40
Alignment explanation
Indices: 93230890--93231057 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
93230880 CATTTGAATG
* * *
93230890 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
93230930 ATGTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * * **
93230970 ATATCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
93231010 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
93231050 GTATCCGG
1 ATATCCGG
93231058 TTAAATCCCG
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.93
41 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:93238921 original size:39 final size:40
Alignment explanation
Indices: 93238862--93238965 Score: 140
Period size: 39 Copynumber: 2.6 Consensus size: 40
93238852 CATTTGAATG
* * *
93238862 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-TT
* *
93238902 ATGT-CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTT
93238941 ATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
93238966 ATGGTGCAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
39 31 0.55
40 25 0.45
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTT
Found at i:93239027 original size:40 final size:40
Alignment explanation
Indices: 93238862--93239028 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
93238852 CATTTGAATG
* * *
93238862 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
93238902 ATGT-CGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * * **
93238941 ATATCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
93238981 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
93239021 GTATCCGG
1 ATATCCGG
93239029 TTAAATCCCG
Statistics
Matches: 100, Mismatches: 22, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
38 2 0.02
39 29 0.29
40 67 0.67
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:93242410 original size:3 final size:3
Alignment explanation
Indices: 93242402--93242432 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
93242392 TAACATACTC
93242402 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
93242433 ACTATCAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:93243639 original size:23 final size:23
Alignment explanation
Indices: 93243587--93243639 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
93243577 AACATGGACA
* **
93243587 ACATTAAGACAATGTTTAAATGC
1 ACATTAAGACAAGGTTTAAACAC
93243610 ACATTAAGACAAGGTTTAAACAC
1 ACATTAAGACAAGGTTTAAACAC
*
93243633 ACTTTAA
1 ACATTAA
93243640 TTTGTAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.28
Consensus pattern (23 bp):
ACATTAAGACAAGGTTTAAACAC
Found at i:93243797 original size:38 final size:39
Alignment explanation
Indices: 93243700--93243812 Score: 174
Period size: 38 Copynumber: 2.9 Consensus size: 39
93243690 TGTAAACAAG
* *
93243700 TATTAAAGATGTTCAAACTATGACATAATTAAAGACCCA
1 TATTAATGATGTTCAAATTATGACATAATTAAAGACCCA
* *
93243739 TATTAATGATGTTCAGATTATGACATAATTAAA-ACTCA
1 TATTAATGATGTTCAAATTATGACATAATTAAAGACCCA
*
93243777 TATTAATGATATTCAAATTATGACATAATTAAAGAC
1 TATTAATGATGTTCAAATTATGACATAATTAAAGAC
93243813 TTAAACTATA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 35 0.52
39 32 0.48
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.34
Consensus pattern (39 bp):
TATTAATGATGTTCAAATTATGACATAATTAAAGACCCA
Found at i:93244064 original size:15 final size:14
Alignment explanation
Indices: 93244031--93244074 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 14
93244021 TAGGAAAACT
93244031 AATAAT-AATAATAA
1 AATAATAAATAA-AA
93244045 TAATAATAAACTAAAA
1 -AATAATAAA-TAAAA
93244061 AATAATAAATAAAA
1 AATAATAAATAAAA
93244075 TGTAAAAGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 15 0.56
16 4 0.15
17 3 0.11
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (14 bp):
AATAATAAATAAAA
Found at i:93244068 original size:3 final size:3
Alignment explanation
Indices: 93243995--93244053 Score: 59
Period size: 3 Copynumber: 19.7 Consensus size: 3
93243985 AACTTAAATA
* **
93243995 AAT AAT AAT ACT -AT ACAT AAT AAT AAT AGG AA- AACT AAT AAT AAT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
93244040 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
93244054 ACTAAAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
2 3 0.06
3 39 0.83
4 5 0.11
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:93249743 original size:20 final size:20
Alignment explanation
Indices: 93249718--93249766 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
93249708 AGAGATTTGG
*
93249718 TATCGATACATTGACTCGAA
1 TATCGATACATTGACCCGAA
* *
93249738 TATCGATACCTTGACCCGAG
1 TATCGATACATTGACCCGAA
93249758 TATCGATAC
1 TATCGATAC
93249767 TCGTGGTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (20 bp):
TATCGATACATTGACCCGAA
Found at i:93250696 original size:15 final size:15
Alignment explanation
Indices: 93250676--93250706 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
93250666 TAACCCAAAA
93250676 CTTTAAGCCTAATTT
1 CTTTAAGCCTAATTT
93250691 CTTTAAGCCTAATTT
1 CTTTAAGCCTAATTT
93250706 C
1 C
93250707 AACACGGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.23, G:0.06, T:0.45
Consensus pattern (15 bp):
CTTTAAGCCTAATTT
Found at i:93251641 original size:2 final size:2
Alignment explanation
Indices: 93251592--93251623 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
93251582 TCTATTACAA
93251592 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
93251624 CCAAATCAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93255112 original size:29 final size:29
Alignment explanation
Indices: 93255073--93255152 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
93255063 CTTAATAATC
*
93255073 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
93255103 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
93255132 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
93255153 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:93263026 original size:29 final size:29
Alignment explanation
Indices: 93262987--93263066 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
93262977 CTTAATAATC
*
93262987 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
93263017 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
93263046 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
93263067 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:93275224 original size:40 final size:40
Alignment explanation
Indices: 93275139--93275289 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
93275129 AATTGAATGA
* * *
93275139 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
93275179 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
93275220 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
93275259 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
93275290 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:93275303 original size:40 final size:40
Alignment explanation
Indices: 93275176--93275305 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
93275166 ATGCTGGAAA
* * * *
93275176 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
93275216 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
93275256 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
93275296 TTATATCCGG
1 TTATATCCGG
93275306 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:93283246 original size:40 final size:40
Alignment explanation
Indices: 93283161--93283311 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
93283151 AATTGAATGA
* * *
93283161 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
93283201 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
93283242 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
93283281 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
93283312 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:93283325 original size:40 final size:40
Alignment explanation
Indices: 93283198--93283327 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
93283188 ATGCTGGAAA
* * * *
93283198 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
93283238 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
93283278 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
93283318 TTATATCCGG
1 TTATATCCGG
93283328 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:93287328 original size:45 final size:46
Alignment explanation
Indices: 93287279--93287370 Score: 132
Period size: 46 Copynumber: 2.0 Consensus size: 46
93287269 TTGAATTTAA
* **
93287279 AGCTTGCTAAA-TTGCTCTTAATATTTCTGGATAAGTTACTTAGTT
1 AGCTTGCTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
* *
93287324 AGCTTGTTAAATTTGCCCTTATTATTTCCAGATAAGTTACTTAGTT
1 AGCTTGCTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
93287370 A
1 A
93287371 AAGAAAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
45 10 0.24
46 31 0.76
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (46 bp):
AGCTTGCTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
Found at i:93290129 original size:40 final size:40
Alignment explanation
Indices: 93290063--93290229 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
93290053 AAATTGAATG
* * *
93290063 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
93290102 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
93290142 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
93290182 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
93290222 ATATCCGG
1 ATATCCGG
93290230 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:93298132 original size:40 final size:40
Alignment explanation
Indices: 93298066--93298232 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
93298056 AAATTGAATG
* * *
93298066 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
93298105 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
93298145 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
93298185 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
93298225 ATATCCGG
1 ATATCCGG
93298233 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:93300684 original size:18 final size:17
Alignment explanation
Indices: 93300656--93300689 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
93300646 TGCTTTAACC
93300656 CATTACAGAACAAGAAA
1 CATTACAGAACAAGAAA
*
93300673 CATTATCAGAACTAGAA
1 CATTA-CAGAACAAGAA
93300690 TCAGAATCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.18, G:0.12, T:0.18
Consensus pattern (17 bp):
CATTACAGAACAAGAAA
Found at i:93300695 original size:6 final size:6
Alignment explanation
Indices: 93300677--93300807 Score: 94
Period size: 6 Copynumber: 21.3 Consensus size: 6
93300667 AAGAAACATT
*
93300677 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATGAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* *
93300724 GTGACAGA ATCAGA ATAAGA ATCA-A TATCAGGTA A-CAGA ATCA-A AGTCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA -ATCA-G-A ATCAGA ATCAGA A-TCAGA
* *
93300775 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
93300808 GTGAATACAA
Statistics
Matches: 100, Mismatches: 10, Indels: 30
0.71 0.07 0.21
Matches are distributed among these distances:
5 9 0.09
6 76 0.76
7 11 0.11
8 3 0.03
9 1 0.01
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:93300735 original size:31 final size:31
Alignment explanation
Indices: 93300677--93300807 Score: 146
Period size: 31 Copynumber: 4.3 Consensus size: 31
93300667 AAGAAACATT
93300677 ATCAGAA-CTAGAATCA-G-AATCAGAATCAGA
1 ATCAGAATC-AGAATCAGGTAA-CAGAATCAGA
* *
93300707 ATCAGAATGAGAATCAGGTGACAGAATCAGA
1 ATCAGAATCAGAATCAGGTAACAGAATCAGA
*
93300738 ATAAGAATCA-ATATCAGGTAACAGAATCA-A
1 ATCAGAATCAGA-ATCAGGTAACAGAATCAGA
* *
93300768 AGTCAGAATCAGTATCAGGTAACAGAATCAAA
1 A-TCAGAATCAGAATCAGGTAACAGAATCAGA
93300800 ATCAGAAT
1 ATCAGAAT
93300808 GTGAATACAA
Statistics
Matches: 87, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
30 17 0.20
31 67 0.77
32 3 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGGTAACAGAATCAGA
Found at i:93300765 original size:19 final size:19
Alignment explanation
Indices: 93300741--93300804 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 19
93300731 AATCAGAATA
93300741 AGAATCAATATCAGGTAAC
1 AGAATCAATATCAGGTAAC
93300760 AGAATC-A-A--A-GT--C
1 AGAATCAATATCAGGTAAC
*
93300772 AGAATCAGTATCAGGTAAC
1 AGAATCAATATCAGGTAAC
*
93300791 AGAATCAAAATCAG
1 AGAATCAATATCAG
93300805 AATGTGAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 14
0.67 0.06 0.27
Matches are distributed among these distances:
12 7 0.20
14 3 0.09
15 1 0.03
16 1 0.03
17 3 0.09
18 1 0.03
19 19 0.54
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (19 bp):
AGAATCAATATCAGGTAAC
Found at i:93301239 original size:27 final size:27
Alignment explanation
Indices: 93301209--93301458 Score: 306
Period size: 27 Copynumber: 9.3 Consensus size: 27
93301199 AGGGTAAAAT
* * * *
93301209 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
93301236 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
93301263 TGTATTTCTACACTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
93301290 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
93301317 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
93301344 GGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
93301371 GGTAATTCTACCATA-TAGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* *
93301398 GATAATTCTACCCTAC-AGGTGTATTTT
1 GGTAATTCTACCCTACAAGG-GTATTTC
*
93301425 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
93301452 GATAATT
1 GGTAATT
93301459 TTGTAAACCT
Statistics
Matches: 195, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.01
27 190 0.97
28 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:93301283 original size:54 final size:54
Alignment explanation
Indices: 93301209--93301458 Score: 340
Period size: 54 Copynumber: 4.6 Consensus size: 54
93301199 AGGGTAAAAT
* * * *
93301209 GGTAATTTTACCCCATAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
93301263 TGTATTTCTACACTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
93301317 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * *
93301371 GGTAATTCTACCATA-TAGGAGTATTTCGATAATTCTACCCTACAGGTGTATTTT
1 GGTAATTCTACCCTACAAGG-GTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
93301425 AGTAATTCTACCCTACAAGGGTATTTCGATAATT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATT
93301459 TTGTAAACCT
Statistics
Matches: 172, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
53 2 0.01
54 167 0.97
55 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:93301333 original size:81 final size:80
Alignment explanation
Indices: 93301209--93301458 Score: 340
Period size: 81 Copynumber: 3.1 Consensus size: 80
93301199 AGGGTAAAAT
* * * * *
93301209 GGTAATTTTACCCCATAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCTGTATTTCTAC
1 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCTGTAATTCTAC
93301274 ACTACAAGGGTATTTC
66 -CTACAAGGGTATTTC
* *
93301290 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCTGTAATTCTAC
*
93301355 CATACAGGGGTATTTC
66 C-TACAAGGGTATTTC
* * * *
93301371 GGTAATTCTACCATATAGGAGTATTTCGATAATTCTACCCTACAGGTGTATTT-TAGTAATTCTA
1 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCT-GTAATTCTA
93301435 CCCTACAAGGGTATTTC
65 -CCTACAAGGGTATTTC
*
93301452 GATAATT
1 GGTAATT
93301459 TTGTAAACCT
Statistics
Matches: 150, Mismatches: 16, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
80 1 0.01
81 147 0.98
82 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (80 bp):
GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCTGTAATTCTAC
CTACAAGGGTATTTC
Found at i:93301472 original size:27 final size:27
Alignment explanation
Indices: 93301440--93301501 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
93301430 TTCTACCCTA
93301440 CAAGGGTATTTCGA-TAATTTTGTAAAC
1 CAAGGGTATTT-GAGTAATTTTGTAAAC
* * *
93301467 CTAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTGAGTAATTTTGTAAAC
93301494 CAAGGGTA
1 CAAGGGTA
93301502 AAATGGTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.03
27 29 0.97
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTGAGTAATTTTGTAAAC
Found at i:93301485 original size:81 final size:78
Alignment explanation
Indices: 93301237--93301485 Score: 250
Period size: 81 Copynumber: 3.1 Consensus size: 78
93301227 GGGTATCTCG
* * *
93301237 GTAATTCTACCCTACAGGGGTATTTCTGTATTTCTACACTACAAGGGTATTTCGGTAATTCT-AC
1 GTAATTCTACCCTACAGGGGTATTT-TGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTAAA
**
93301301 CCTACAGGGGTATTTCG
65 CCT--A-GGGTATTTTA
* * * *
93301318 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTT-TGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTA-A
** *
93301383 ATATAGGAGTA-TTTC
64 ACCTAGG-GTATTTTA
* * *
93301398 GATAATTCTACCCTACAGGTGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGATAATTTTGT
1 G-TAATTCTACCCTACAGGGGTATTTT-GTAATTCTACCCTACAAGGGTATTTCGGTAA--TTCT
93301463 AAACCTAGGGTATTTTA
62 AAACCTAGGGTATTTTA
93301480 GTAATT
1 GTAATT
93301486 TTGTAAATCA
Statistics
Matches: 139, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
80 5 0.04
81 120 0.86
82 9 0.06
83 5 0.04
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (78 bp):
GTAATTCTACCCTACAGGGGTATTTTGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTAAAC
CTAGGGTATTTTA
Found at i:93301514 original size:27 final size:27
Alignment explanation
Indices: 93301480--93301648 Score: 241
Period size: 27 Copynumber: 6.3 Consensus size: 27
93301470 GGGTATTTTA
* *
93301480 GTAATTTTGTAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
93301507 GTATTTTTGTAAATCGA-GGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
93301533 GTAATTCTGTAAATCGAGGGTAAGACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
93301560 GTAATTCTGTAAATCGAGGATAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
93301587 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
93301614 GTAATTCTGTAAATCGAGAGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
93301641 GTAATTCT
1 GTAATTCT
93301649 ATGTTATTTC
Statistics
Matches: 126, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
26 24 0.19
27 102 0.81
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:93301683 original size:27 final size:27
Alignment explanation
Indices: 93301653--93301739 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
93301643 AATTCTATGT
*
93301653 TATTTCGGTAATTTTACAAATCGAGGA
1 TATTTCGGTAATTTTACAAATCGAGGG
* * *
93301680 TATTTGGGTTATTTTATAAATC-AGGGG
1 TATTTCGGTAATTTTACAAATCGA-GGG
*
93301707 TACTTT-GGTAATTTTACAAGTCGAGGG
1 TA-TTTCGGTAATTTTACAAATCGAGGG
93301734 TATTTC
1 TATTTC
93301740 AATAATTTGG
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
26 4 0.08
27 41 0.84
28 4 0.08
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAATCGAGGG
Found at i:93303623 original size:29 final size:27
Alignment explanation
Indices: 93303589--93303691 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
93303579 TACTCAATCA
*
93303589 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
93303618 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
93303647 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
93303676 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
93303692 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:93310204 original size:79 final size:80
Alignment explanation
Indices: 93310076--93310264 Score: 249
Period size: 79 Copynumber: 2.4 Consensus size: 80
93310066 TGGTAATTAT
* * *
93310076 ATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGACTAAATCCGGGCTAAGACCCGAAGGCAT
* *
93310140 TCGTGCGAGTTGTTAA
65 TCGTGCAAGTCGTTAA
* *
93310156 ATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTAAATCCGGGCTAATACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TGACTAAATCCGGGCTAAGACCCGAAGGCAT
* **
93310219 TTGTGCAAGTCGTTCT
65 TCGTGCAAGTCGTTAA
93310235 ATCCGGGCTAAGACCCGAAGGCATTCGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGC
93310265 ATGTGGTTAT
Statistics
Matches: 96, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
78 3 0.03
79 62 0.65
80 31 0.32
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTCGTTAA
Found at i:93310265 original size:40 final size:40
Alignment explanation
Indices: 93310034--93310280 Score: 257
Period size: 40 Copynumber: 6.2 Consensus size: 40
93310024 CAATTGAATG
* * ** ** **
93310034 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
93310074 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
* *
93310114 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* *
93310154 AAATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * * *
93310193 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
93310233 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
93310273 ATATCCGG
1 ATATCCGG
93310281 TTGTATTCCG
Statistics
Matches: 178, Mismatches: 24, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 42 0.24
40 131 0.74
41 5 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:93313609 original size:40 final size:39
Alignment explanation
Indices: 93313564--93313771 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
93313554 CGGAATACAA
*
93313564 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
93313604 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
93313644 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
93313684 CCGGATGTAGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
93313724 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
93313764 CCGGATAT
1 CCGGATAT
93313772 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
39 4 0.03
40 136 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:93313704 original size:80 final size:81
Alignment explanation
Indices: 93313564--93313769 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 81
93313554 CGGAATACAA
* * *
93313564 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
93313628 -GCCTTCGGGTATTAGC
65 GGCCTTCGGGTATTAAC
* *
93313644 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
93313707 GGCCTTCGGGTCTTAAC
65 GGCCTTCGGGTATTAAC
** * ** * *
93313724 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
93313770 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 101 0.94
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
GCCTTCGGGTATTAAC
Found at i:93321603 original size:125 final size:122
Alignment explanation
Indices: 93321380--93321603 Score: 335
Period size: 125 Copynumber: 1.8 Consensus size: 122
93321370 GAATTATGTG
* * *
93321380 AAATGAAATATGGATGTGTAATGATTATTGATTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AAATGAAACATGGATGTGTAATGATTATTGATTATGTGTGTATGAGCAATTGAATGATACCCGGG
* *
93321445 CTAAGTCCCGAAGGCGATTATGCTAGTGATATATTTGTGTTTGAGCCTTAGTAACGA
66 CTAAGTCCCGAAGACGATTATGCTAGTAATATATTTGTGTTTGAGCCTTAGTAACGA
*
93321502 AAATGAAACATGGATGTGTAATGATTATTGATGTATGTGTGTGCATGAGCAATTGAATGATATCC
1 AAATGAAACATGGATGTGTAATGATTATTGAT-TATGTGTGT--ATGAGCAATTGAATGATACCC
93321567 GGGCTAAGTCCCGAAGAC-ATTTATGCT-GTAATTATAT
63 GGGCTAAGTCCCGAAGACGA-TTATGCTAGTAA-TATAT
93321604 CCGGGTTAAG
Statistics
Matches: 91, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
122 31 0.34
123 9 0.10
124 4 0.04
125 47 0.52
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (122 bp):
AAATGAAACATGGATGTGTAATGATTATTGATTATGTGTGTATGAGCAATTGAATGATACCCGGG
CTAAGTCCCGAAGACGATTATGCTAGTAATATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:93321619 original size:39 final size:40
Alignment explanation
Indices: 93321561--93321661 Score: 123
Period size: 39 Copynumber: 2.5 Consensus size: 40
93321551 CAATTGAATG
* * *
93321561 ATATCCGGGCTAAGTCCCGAAGACATTTATGCT-GTAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGTAACT
* * * *
93321600 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGTAACT
*
93321640 ACATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
93321662 GCATCGTGCG
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
39 28 0.54
40 24 0.46
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGTAACT
Found at i:93321694 original size:79 final size:81
Alignment explanation
Indices: 93321602--93321790 Score: 244
Period size: 79 Copynumber: 2.4 Consensus size: 81
93321592 CTGTAATTAT
* * *
93321602 ATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-TGACTACATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTTG-CTAAATCCGGGCTAAGACCCGAAGGCA
* *
93321665 -TCGTGCGAGTTGTTAA
65 TTCGTGCAAGTCGTTAA
* *
93321681 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTAAATCCGGGCTAATACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTTGCTAAATCCGGGCTAAGACCCGAAGGCAT
* **
93321745 TTGTGCAAGTCGTTCT
66 TCGTGCAAGTCGTTAA
93321761 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTCGTGC
93321791 ATGTGGTTAT
Statistics
Matches: 97, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
78 3 0.03
79 51 0.53
80 43 0.44
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (81 bp):
ATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTTGCTAAATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTCGTTAA
Found at i:93321784 original size:40 final size:40
Alignment explanation
Indices: 93321561--93321806 Score: 257
Period size: 40 Copynumber: 6.2 Consensus size: 40
93321551 CAATTGAATG
* * ** * **
93321561 ATATCCGGGCTAAGTCCCGAAGACATTTATGC-TGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
93321600 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
* *
93321640 ACATCCGGGCTAAGACCCGAAGGCA-TCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* *
93321679 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * * *
93321719 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
93321759 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
93321799 ATATCCGG
1 ATATCCGG
93321807 TCGTATTCCG
Statistics
Matches: 177, Mismatches: 24, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 56 0.32
40 120 0.68
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:93326207 original size:29 final size:27
Alignment explanation
Indices: 93326173--93326275 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
93326163 TACTCAATCA
*
93326173 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
93326202 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
93326231 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
93326260 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
93326276 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:93328618 original size:20 final size:20
Alignment explanation
Indices: 93328593--93328631 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
93328583 AGAAAGTATG
93328593 GGGTCCCTAATAAAATAATA
1 GGGTCCCTAATAAAATAATA
*
93328613 GGGTCCTTAATAAAATAAT
1 GGGTCCCTAATAAAATAAT
93328632 TTGGAATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (20 bp):
GGGTCCCTAATAAAATAATA
Found at i:93344803 original size:53 final size:53
Alignment explanation
Indices: 93344658--93344878 Score: 222
Period size: 53 Copynumber: 4.2 Consensus size: 53
93344648 CATATAAGAT
* *
93344658 AATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCATGTCAATACATGG
1 AATTGGTAA-GTTTATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGG
* * * * *
93344712 CATTGATAAGTTACTATAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGG
1 AATTGGTAAGTT--TATAAGGC-AAGGATACCATGTAAGACCATGTCAAGACATGG
* **
93344767 AATTGGTGAGTTTATAAGGCAAGGATACCATGTAAGACCATGTTGAGACATGG
1 AATTGGTAAGTTTATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGG
* * *
93344820 CAA-TGGTAAGTTT-CAA---AAGGATACCATGTAAGACCATGACAAGTCATGG
1 -AATTGGTAAGTTTATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGG
93344869 CAA-TGGTAAG
1 -AATTGGTAAG
93344879 GTACCCGTGT
Statistics
Matches: 141, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
49 39 0.28
52 6 0.04
53 43 0.30
54 9 0.06
55 40 0.28
56 4 0.03
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (53 bp):
AATTGGTAAGTTTATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGG
Found at i:93344868 original size:49 final size:51
Alignment explanation
Indices: 93344679--93344878 Score: 174
Period size: 49 Copynumber: 3.8 Consensus size: 51
93344669 TTTCTAAGGC
* * * * *
93344679 AAGGATACCATGTAAGACCATGTCAATACATGGCATTGATAAGTTACTATAAGG
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGTT--TACAA-G
* * * * *
93344733 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGG-AATTGGTGAGTTTATAAGG
1 --AAGGATACCATGTAAGACCATGACAAGACATGGCAA-TGGTAAGTTTACAA-G
***
93344786 CAAGGATACCATGTAAGACCATGTTGAGACATGGCAATGGTAAGTTT-CAA-
1 -AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGTTTACAAG
*
93344836 AAGGATACCATGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAG
93344879 GTACCCGTGT
Statistics
Matches: 122, Mismatches: 19, Indels: 13
0.79 0.12 0.08
Matches are distributed among these distances:
49 39 0.32
52 6 0.05
53 39 0.32
54 3 0.02
55 31 0.25
56 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (51 bp):
AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGTTTACAAG
Found at i:93344947 original size:5 final size:5
Alignment explanation
Indices: 93344937--93344964 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
93344927 AGAGAATATC
93344937 AAGGT AAGGT AAGGT AAGGT AAGGT AAG
1 AAGGT AAGGT AAGGT AAGGT AAGGT AAG
93344965 ACGAGTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.39, T:0.18
Consensus pattern (5 bp):
AAGGT
Found at i:93349437 original size:33 final size:34
Alignment explanation
Indices: 93349400--93349474 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
93349390 AGTGACAGTC
*
93349400 CAGTATCAG-TATGGCCCTAACCCATTACAGTAA
1 CAGTATCAGTTAGGGCCCTAACCCATTACAGTAA
* * * *
93349433 CAGTATTAGTTAGGGCCTTATCCCATTATAGTAA
1 CAGTATCAGTTAGGGCCCTAACCCATTACAGTAA
93349467 CAGTATCA
1 CAGTATCA
93349475 TAAATGCAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
33 8 0.23
34 27 0.77
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (34 bp):
CAGTATCAGTTAGGGCCCTAACCCATTACAGTAA
Found at i:93360010 original size:46 final size:46
Alignment explanation
Indices: 93359866--93360027 Score: 148
Period size: 46 Copynumber: 3.5 Consensus size: 46
93359856 GTGCGCCAGT
* * * * *
93359866 GTAAGACATGTCTCGGACATGCTTCAGCCACACTAGGAGAGCCAGTA
1 GTAAGACATGTCTGGGACATGCTTCAGCCATATTACGAGAGCTAG-A
* * * * * *
93359913 -TAAGACCATGTCTGGGACATGGCATCAG-CATCTAGACAAGGGCTAGT
1 GTAAGA-CATGTCTGGGACAT-GCTTCAGCCATAT-TACGAGAGCTAGA
* * *
93359960 GTAAGACATGTTTGGGACATGCTTCAGCCATATTATGAGTGCTAGA
1 GTAAGACATGTCTGGGACATGCTTCAGCCATATTACGAGAGCTAGA
93360006 GTAAGACATGTCTGGGACATGC
1 GTAAGACATGTCTGGGACATGC
93360028 ATCGGCTTTG
Statistics
Matches: 90, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
46 40 0.44
47 32 0.36
48 18 0.20
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCTTCAGCCATATTACGAGAGCTAGA
Found at i:93366779 original size:28 final size:28
Alignment explanation
Indices: 93366745--93366808 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
93366735 GTGACTGAGT
* * *
93366745 CACCAGATACAGATAATTATGGCAGGGC
1 CACCAGAAACAAATAATTATGGCAGAGC
* *
93366773 CACCAGAAACAAATATTTGTGGCAGAGC
1 CACCAGAAACAAATAATTATGGCAGAGC
93366801 CACCAGAA
1 CACCAGAA
93366809 CGCTTCCTCC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (28 bp):
CACCAGAAACAAATAATTATGGCAGAGC
Found at i:93371025 original size:63 final size:64
Alignment explanation
Indices: 93370884--93371085 Score: 232
Period size: 63 Copynumber: 3.1 Consensus size: 64
93370874 CATCATGTGT
* * * *
93370884 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACATCATG
1 ACAAGAGAGCTAC--GAGA-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATG
93370949 TAG
62 TAG
* * *
93370952 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGT-TACACCATGTAG
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG
* * *
93371015 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATATA-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG
93371077 TACAAGAGA
1 -ACAAGAGA
93371086 ACCGAACTAT
Statistics
Matches: 118, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
62 23 0.19
63 48 0.41
64 28 0.24
65 3 0.03
66 3 0.03
68 13 0.11
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG
Found at i:93372181 original size:2 final size:2
Alignment explanation
Indices: 93372174--93372202 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
93372164 TCATGACATG
93372174 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
93372203 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:93378277 original size:28 final size:28
Alignment explanation
Indices: 93378200--93378304 Score: 97
Period size: 28 Copynumber: 3.8 Consensus size: 28
93378190 CTACCAGAAC
* * * * *
93378200 AGATA-TTGTGACTGAGTCACCAAATAC
1 AGATATTTGTGGCAGAGCCACCAAAAAT
* * *
93378227 AGATAATTGTGTCAGGGCCACCAAAAAT
1 AGATATTTGTGGCAGAGCCACCAAAAAT
* * *
93378255 AGATATTTGTGGCAGAGCTACC-AGATT
1 AGATATTTGTGGCAGAGCCACCAAAAAT
93378282 AGATATTTGTGGCAGAGCCACCA
1 AGATATTTGTGGCAGAGCCACCA
93378305 GAACGCTTCC
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
27 29 0.46
28 34 0.54
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (28 bp):
AGATATTTGTGGCAGAGCCACCAAAAAT
Found at i:93378289 original size:27 final size:27
Alignment explanation
Indices: 93378227--93378306 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
93378217 CACCAAATAC
* * * * *
93378227 AGATAATTGTGTCAGGGCCACCAAAAAT
1 AGATATTTGTGGCAGAGCCACC-AGATT
*
93378255 AGATATTTGTGGCAGAGCTACCAGATT
1 AGATATTTGTGGCAGAGCCACCAGATT
93378282 AGATATTTGTGGCAGAGCCACCAGA
1 AGATATTTGTGGCAGAGCCACCAGA
93378307 ACGCTTCCTC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 27 0.60
28 18 0.40
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (27 bp):
AGATATTTGTGGCAGAGCCACCAGATT
Found at i:93386138 original size:48 final size:48
Alignment explanation
Indices: 93386071--93386526 Score: 804
Period size: 48 Copynumber: 9.5 Consensus size: 48
93386061 TATATATGTG
* *
93386071 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
93386119 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
93386167 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATCTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
93386215 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATCTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
93386263 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
93386311 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
93386359 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
93386407 CGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
93386455 CGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
93386503 TGTGGTAAAGCCGAATGGCTAGTG
1 TGTGGTAAAGCCGAATGGCTAGTG
93386527 ATTCGGCTAG
Statistics
Matches: 399, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 399 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:93386746 original size:37 final size:37
Alignment explanation
Indices: 93386696--93386798 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
93386686 GGAAATATAT
93386696 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
93386733 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
93386770 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
93386799 GGACTATTTG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:93392218 original size:40 final size:40
Alignment explanation
Indices: 93391997--93392214 Score: 314
Period size: 40 Copynumber: 5.5 Consensus size: 40
93391987 AAACCAAGTA
* *
93391997 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
93392036 CCTTTGGGATTTAGCTCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
93392076 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
93392116 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
93392156 CCTTTGGGACTTAGCCCGGTTATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
93392196 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
93392215 TTATCATTCG
Statistics
Matches: 160, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.08
40 147 0.92
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:93394747 original size:40 final size:40
Alignment explanation
Indices: 93394702--93394791 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 40
93394692 CGGAATACAA
*
93394702 CCGGATATAACCACGT-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCAC-AATTGCCTTCGGGTCTTAAC
* * *
93394742 CCGGATGTAGCCGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
93394782 CCGGATATAA
1 CCGGATATAA
93394792 TTTCCAGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
39 3 0.07
40 39 0.93
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
Found at i:93426096 original size:21 final size:20
Alignment explanation
Indices: 93426068--93426106 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
93426058 CAAAACTTGT
93426068 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
93426088 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
93426107 CAAAACGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:93429758 original size:40 final size:40
Alignment explanation
Indices: 93429675--93429894 Score: 239
Period size: 40 Copynumber: 5.5 Consensus size: 40
93429665 ACCCAAGTAT
** * *
93429675 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
93429713 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * **
93429753 CTTCGGGACTTAGCCCGGATATAATTGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
** *
93429793 CTTCGGGTCTTAGCCCGGATATAGAAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
93429833 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
93429873 CTTCGGGACTTAGCCCTGATAT
1 CTTCGGGTCTTAGCCCGGATAT
93429895 CATTCGAATA
Statistics
Matches: 150, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 123 0.82
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:93437903 original size:40 final size:40
Alignment explanation
Indices: 93437795--93438011 Score: 214
Period size: 39 Copynumber: 5.5 Consensus size: 40
93437785 ACCCAAGTAT
* * * *
93437795 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* ** *
93437833 CTTCGGGTCTTAG-CCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
**
93437872 CTTCGGGACTTAGCCCGGATATAATTGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* *
93437912 CTTCGGGTCTTAGCCCGGATATAGA--ACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATA-ATCACTAGCACAAATGC
* * * * *
93437951 CTT-TGGATCTTAG-TCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAATCACTAGCACAAATGC
93437990 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
93438012 CATTCGAATA
Statistics
Matches: 145, Mismatches: 26, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
38 36 0.25
39 55 0.38
40 53 0.37
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:93438002 original size:118 final size:116
Alignment explanation
Indices: 93437795--93438011 Score: 321
Period size: 118 Copynumber: 1.8 Consensus size: 116
93437785 ACCCAAGTAT
* *
93437795 CTTCGGGATTTAGCCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAGCCGGATATGGTCAC
1 CTTCGGGATTTAGCCGGATATAA-CACTCGCACAAGGCCTTCGGATCTTAGCCGGATATAGTCAC
*
93437860 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAATTGCTAGCACAAATGC
65 TAGCATAAAAGCCTTCGGGACTTAGCCCGGATATAATTGCTAGCACAAATGC
* * *
93437912 CTTCGGG-TCTTAGCCCGGATATAGA-ACTCGCACAAATGCCTTTGGATCTTAGTCGGATATAGT
1 CTTCGGGAT-TTAG-CCGGATATA-ACACTCGCAC-AAGGCCTTCGGATCTTAGCCGGATATAGT
93437975 CACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
62 CACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
93438012 CATTCGAATA
Statistics
Matches: 90, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
116 1 0.01
117 19 0.21
118 69 0.77
119 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (116 bp):
CTTCGGGATTTAGCCGGATATAACACTCGCACAAGGCCTTCGGATCTTAGCCGGATATAGTCACT
AGCATAAAAGCCTTCGGGACTTAGCCCGGATATAATTGCTAGCACAAATGC
Found at i:93442912 original size:2 final size:2
Alignment explanation
Indices: 93442905--93442931 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
93442895 GAGACTAGTC
93442905 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
93442932 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:93444199 original size:63 final size:62
Alignment explanation
Indices: 93444017--93444199 Score: 172
Period size: 63 Copynumber: 2.8 Consensus size: 62
93444007 ATATAGTTCG
* * * * * *
93444017 GCTCTCTTGTAC-ACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGTA
1 GCTCTCTTGT-CTACATGGTGTACACT-AGTACCA-CCATGCGACCTAGCTACATATATCCCATA
* * * *
93444080 GCTCTCTTGTCTACATAGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCCA
1 GCTCTCTTGTCTACAT-G-GT-GTACA-CTAGTACCAC-CATGCGACCTAGCTACATATATCCCA
93444145 TA
61 TA
*
93444147 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACAC-TAGTACCACCATGCGACCTAGCTACAT
93444200 CATAATGTCT
Statistics
Matches: 97, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 33 0.34
64 10 0.10
65 5 0.05
66 21 0.22
67 27 0.28
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.29
Consensus pattern (62 bp):
GCTCTCTTGTCTACATGGTGTACACTAGTACCACCATGCGACCTAGCTACATATATCCCATA
Found at i:93446064 original size:6 final size:6
Alignment explanation
Indices: 93446034--93446158 Score: 78
Period size: 6 Copynumber: 20.3 Consensus size: 6
93446024 AAGAAACATT
* * *
93446034 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
93446083 ATCAGA ATCAAA ATCAGA ATTAGA ATTAGGTG AT-AGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
*
93446132 ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
93446159 GTGAATGCAA
Statistics
Matches: 93, Mismatches: 15, Indels: 22
0.72 0.12 0.17
Matches are distributed among these distances:
5 6 0.06
6 74 0.80
7 9 0.10
8 4 0.04
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:93446136 original size:37 final size:37
Alignment explanation
Indices: 93446042--93446136 Score: 127
Period size: 37 Copynumber: 2.6 Consensus size: 37
93446032 TTATCAGAAC
* *
93446042 TAGAATCAAAATGAGAATCAGAATCAGAATCAGGTGA
1 TAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGA
* * * *
93446079 CAGAATCAGAATCAAAATCAGAATTAGAATTAGGTGA
1 TAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGA
*
93446116 TAGAATCAGAATCAGTATCAG
1 TAGAATCAGAATCAGAATCAG
93446137 GTAACAGAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.21
Consensus pattern (37 bp):
TAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGA
Found at i:93446138 original size:25 final size:25
Alignment explanation
Indices: 93446094--93446158 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
93446084 TCAGAATCAA
* * * *
93446094 AATCAGAATTAGAATTAGGTGATAG
1 AATCAGAATCAGAATCAGGTAACAG
*
93446119 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
93446144 AATCAAAATCAGAAT
1 AATCAGAATCAGAAT
93446159 GTGAATGCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.48, C:0.11, G:0.18, T:0.23
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:93446376 original size:28 final size:27
Alignment explanation
Indices: 93446299--93446410 Score: 118
Period size: 27 Copynumber: 4.1 Consensus size: 27
93446289 GTAACAAAGT
*
93446299 CACCAGATACAGATAATGTGGCAGAGC
1 CACCAGAAACAGATAATGTGGCAGAGC
* * *
93446326 CACCA-AAATAGATATTTGTGGCATAGC
1 CACCAGAAACAGATA-ATGTGGCAGAGC
*
93446353 CACCAGAAACAGAATATTGTGGCAGAGC
1 CACCAGAAACAG-ATAATGTGGCAGAGC
* * * *
93446381 CACCAGAATCAAAAAATGTGGCAAAGC
1 CACCAGAAACAGATAATGTGGCAGAGC
93446408 CAC
1 CAC
93446411 TTAACAGAAT
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
26 7 0.10
27 35 0.49
28 26 0.37
29 3 0.04
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGAAACAGATAATGTGGCAGAGC
Found at i:93446401 original size:55 final size:54
Alignment explanation
Indices: 93446293--93446410 Score: 139
Period size: 55 Copynumber: 2.2 Consensus size: 54
93446283 GACATTGTAA
* * * **
93446293 CAAAGTCACCAGATACAGATAATGTGGCAGAGCCACCAAAATAGATATTTGTGG
1 CAAAGCCACCAGAAACAGATAATGTGGCAGAGCCACCAAAATAGAAAAATGTGG
* * *
93446347 CATAGCCACCAGAAACAGAATATTGTGGCAGAGCCACCAGAATCA-AAAAATGTGG
1 CAAAGCCACCAGAAACAG-ATAATGTGGCAGAGCCACCAAAAT-AGAAAAATGTGG
93446402 CAAAGCCAC
1 CAAAGCCAC
93446411 TTAACAGAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
54 15 0.28
55 37 0.70
56 1 0.02
ACGTcount: A:0.41, C:0.22, G:0.21, T:0.16
Consensus pattern (54 bp):
CAAAGCCACCAGAAACAGATAATGTGGCAGAGCCACCAAAATAGAAAAATGTGG
Found at i:93446616 original size:22 final size:22
Alignment explanation
Indices: 93446568--93446626 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
93446558 GTAAATACGT
*
93446568 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
93446590 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
93446612 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
93446627 CGATACGGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:93447068 original size:27 final size:27
Alignment explanation
Indices: 93446973--93447301 Score: 412
Period size: 27 Copynumber: 12.3 Consensus size: 27
93446963 GGGGCAAAAT
* * *
93446973 GGTAATTTTACCCCAC-GAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
*
93447000 GGTAATTCTA-CCTACATGGGTATTT-
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
93447025 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93447052 GGTAATTCTACCTTACAGGGGTATTTA
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93447079 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
93447106 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93447133 GGTAACTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
93447160 GGTAATTCTACCTTACAAGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
93447187 AGTAATTTTACCCTACAGGGGAATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93447214 GGTAATTCTACCTTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
93447241 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93447268 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
93447295 GGTAATT
1 GGTAATT
93447302 TTACAAATCA
Statistics
Matches: 259, Mismatches: 40, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
25 8 0.03
26 25 0.10
27 226 0.87
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:93447104 original size:54 final size:54
Alignment explanation
Indices: 93446974--93447301 Score: 455
Period size: 54 Copynumber: 6.1 Consensus size: 54
93446964 GGGCAAAATG
* * * *
93446974 GTAATTTTACCCCAC-GAGGGTATCTCGGTAATTCTACC-TACATGGGTATTT-A
1 GTAATTCTACCCTACAG-GGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * *
93447026 GTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTAA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * *
93447080 GTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * * *
93447134 GTAACTCTACCCTATAGGGGTATTTCGGTAATTCTACCTTACAAGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * *
93447188 GTAATTTTACCCTACAGGGGAATTTCGGTAATTCTACCTTACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* *
93447242 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
93447296 GTAATT
1 GTAATT
93447302 TTACAAATCA
Statistics
Matches: 244, Mismatches: 29, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
52 32 0.13
53 12 0.05
54 200 0.82
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
Found at i:93447316 original size:27 final size:27
Alignment explanation
Indices: 93447259--93447410 Score: 153
Period size: 27 Copynumber: 5.6 Consensus size: 27
93447249 TACCCTACAG
* * * *
93447259 GGGTATTTCGGTAATTCTACCTTAT-AG
1 GGGTATTTTGGTAATTTTA-CTAATCAA
* *
93447286 GGGTATTTCGGTAATTTTACAAATCAA
1 GGGTATTTTGGTAATTTTACTAATCAA
* * * *
93447313 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACTAATCAA
* * *
93447340 GGGTATTTTAGTAATTTTGCTAATCGA
1 GGGTATTTTGGTAATTTTACTAATCAA
* *
93447367 GGGTATTTTGGTAATTTTTCTAATCGA
1 GGGTATTTTGGTAATTTTACTAATCAA
93447394 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
93447411 GGTAAACTAA
Statistics
Matches: 107, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 3 0.03
27 104 0.97
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACTAATCAA
Found at i:93447317 original size:54 final size:54
Alignment explanation
Indices: 93446974--93447357 Score: 391
Period size: 54 Copynumber: 7.1 Consensus size: 54
93446964 GGGCAAAATG
** * * *
93446974 GTAATTTTACCCCACGAGGGTATCTCGGTAATTCTACC-TACATGGGTATTT-A
1 GTAATTTTACCATACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* *
93447026 GT-ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTAA
1 GTAATTT-TACCATACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * * * *
93447080 GTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTTTACCATACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * * * * * *
93447134 GTAACTCTACCCTATAGGGGTATTTCGGTAATTCTACCTTACAAGAGTATTTCA
1 GTAATTTTACCATACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * * *
93447188 GTAATTTTACCCTACAGGGGAATTTCGGTAATTCTACCTTACAGGAGTATTTCA
1 GTAATTTTACCATACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * * * *
93447242 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCG
1 GTAATTTTACCATACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * * * ** *
93447296 GTAATTTTA-CAAATCAAGGGTATTTTGATAATTTTA-CAAACCAGGGGTATTTTA
1 GTAATTTTACCATA-CAAGGGTATTTCGGTAATTCTACCTTA-CAGGGGTATTTCA
93447350 GTAATTTT
1 GTAATTTT
93447358 GCTAATCGAG
Statistics
Matches: 287, Mismatches: 39, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
51 4 0.01
52 30 0.10
53 16 0.06
54 234 0.82
55 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.37
Consensus pattern (54 bp):
GTAATTTTACCATACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
Found at i:93447328 original size:81 final size:80
Alignment explanation
Indices: 93447002--93447355 Score: 308
Period size: 81 Copynumber: 4.4 Consensus size: 80
93446992 GGTATCTCGG
* * * **
93447002 TAATTCTA-CCTACATGGGTATTT-AGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCT
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACAA
* *
93447065 TACAGGGGTA-TTTAA
66 T-CAAGGGTATTTTGA
* * *
93447080 GTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAACTCTACC
1 -TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA--
* * * *
93447145 CTAT-AGGGGTATTTCGG
63 CAATCAAGGGTATTTTGA
* * * * * *
93447162 TAATTCTACCTTACAAGAGTATTTCAGTAATTTTACCCTACAGGGGAATTTCGGTAATTCTAC-C
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACAA
* *
93447226 TTACAGGAGTA-TTTCA
66 TCA-AGG-GTATTTTGA
* * * *
93447242 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCGGTAATTTTACA
1 -TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC-
93447307 AATCAAGGGTATTTTGA
64 AATCAAGGGTATTTTGA
* ** *
93447324 TAATTTTA-CAAACCAGGGGTATTTTAGTAATT
1 TAATTCTACCCTA-CAGGGGTATTTCAGTAATT
93447356 TTGCTAATCG
Statistics
Matches: 223, Mismatches: 39, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
78 1 0.00
79 10 0.04
80 19 0.09
81 180 0.81
82 9 0.04
83 4 0.02
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (80 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACAA
TCAAGGGTATTTTGA
Found at i:93451342 original size:50 final size:49
Alignment explanation
Indices: 93451229--93451460 Score: 250
Period size: 49 Copynumber: 4.7 Consensus size: 49
93451219 CTGGTAAGCA
* * *
93451229 TAGTAGCCTGCACTTAGTACTACACATGTAACCAATTATC-CAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGA-TACACG
* * **
93451278 TAGTAGCCTACACTTAGTACTACACACGTGGCCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGATACACG
* * * * *
93451328 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGATACACG
*** * * *
93451379 TAGTAGCCTGCACTTAGTACTACACATACGACCAATAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACG
*
93451428 TAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
93451461 TCACAATAGA
Statistics
Matches: 152, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
49 69 0.45
50 45 0.30
51 38 0.25
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACG
Found at i:93451451 original size:100 final size:100
Alignment explanation
Indices: 93451229--93451458 Score: 293
Period size: 100 Copynumber: 2.3 Consensus size: 100
93451219 CTGGTAAGCA
*
93451229 TAGTAGCCTGCACTTAGTACTACACATGT-AACCAATTATCCAGTACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGAACCAATTATCCAGTACACATAGTAGCCTACACTT
** * *
93451293 AGTACTACACACGTGGCCTAACCATCTGATACACG
66 AGTACTACACACACGACCTAACAATCTGATACACG
* * * ** * *
93451328 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGAACCAA-TTATCCAGTACACATAGTAGCCTACACT
* * * *
93451393 TAGTACTACACATACGACC-AATAATCTGGTACATG
65 TAGTACTACACACACGACCTAACAATCTGATACACG
93451428 TAGTAGCCTGCACTTAGTACTACACATGTGA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA
93451459 CCTCACAATA
Statistics
Matches: 112, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
99 28 0.25
100 46 0.41
101 38 0.34
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGAACCAATTATCCAGTACACATAGTAGCCTACACTT
AGTACTACACACACGACCTAACAATCTGATACACG
Found at i:93454239 original size:20 final size:20
Alignment explanation
Indices: 93454204--93454255 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
93454194 AAATGTGGTG
*
93454204 TTTTGAAAA-GCATTTATCT
1 TTTTGAAAACCCATTTATCT
93454223 TTTTGAAAACCCATTTATCT
1 TTTTGAAAACCCATTTATCT
93454243 TTTTGAAAACCCA
1 TTTTGAAAACCCA
93454256 CGTCCTACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 9 0.29
20 22 0.71
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (20 bp):
TTTTGAAAACCCATTTATCT
Found at i:93459571 original size:11 final size:11
Alignment explanation
Indices: 93459557--93459602 Score: 65
Period size: 11 Copynumber: 4.0 Consensus size: 11
93459547 GATATGTTAA
93459557 TGAAGAGAAAG
1 TGAAGAGAAAG
93459568 TGAAGAGAAAG
1 TGAAGAGAAAG
93459579 TGAAGAGAAATAG
1 TGAAGAG-AA-AG
*
93459592 TGTAGAGAAAG
1 TGAAGAGAAAG
93459603 AAAATAAGGG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 20 0.62
12 4 0.12
13 8 0.25
ACGTcount: A:0.52, C:0.00, G:0.35, T:0.13
Consensus pattern (11 bp):
TGAAGAGAAAG
Found at i:93459598 original size:24 final size:22
Alignment explanation
Indices: 93459557--93459602 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 22
93459547 GATATGTTAA
93459557 TGAAGAGAAAGTGAAGAGAAAG
1 TGAAGAGAAAGTGAAGAGAAAG
*
93459579 TGAAGAGAAATAGTGTAGAGAAAG
1 TGAAGAG-AA-AGTGAAGAGAAAG
93459603 AAAATAAGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.33
23 2 0.10
24 12 0.57
ACGTcount: A:0.52, C:0.00, G:0.35, T:0.13
Consensus pattern (22 bp):
TGAAGAGAAAGTGAAGAGAAAG
Found at i:93461363 original size:46 final size:46
Alignment explanation
Indices: 93461300--93461512 Score: 302
Period size: 46 Copynumber: 4.6 Consensus size: 46
93461290 GCTCTCTGAT
* * *
93461300 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
93461346 ATGAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
93461392 GGGAAATGAATAAGACCATGGTTAAAAGATACAATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
93461438 ATGAAAAGAATAAGACCATAGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
93461484 A-GAAAATGAATAAGACCATAGCTGAAAGA
1 ATG-AAATGAATAAGACCATGGTTGAAAGA
93461513 CACTATGACA
Statistics
Matches: 149, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.01
46 148 0.99
ACGTcount: A:0.46, C:0.14, G:0.22, T:0.18
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:93465042 original size:11 final size:11
Alignment explanation
Indices: 93465012--93465044 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
93465002 CTTGATATGT
93465012 AATGAAGAGAA
1 AATGAAGAGAA
93465023 AAT-AAGAGAA
1 AATGAAGAGAA
*
93465033 AGTGAAGAGAA
1 AATGAAGAGAA
93465044 A
1 A
93465045 TAGTGTTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (11 bp):
AATGAAGAGAA
Found at i:93466852 original size:46 final size:46
Alignment explanation
Indices: 93466743--93466959 Score: 283
Period size: 46 Copynumber: 4.7 Consensus size: 46
93466733 ATGAAATGTG
** * * *
93466743 TAAGACCATGGTTGAAAGATACCATGGC-ATGTGATATGAAACGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
*
93466788 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* * * *
93466834 TAAGACCATGGTTGAAAGATACCGTGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* *
93466880 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* * * *
93466926 TAAGACCATAGTTGAAAGACACTATGGCATCATG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATG
93466960 TCAAAGATAA
Statistics
Matches: 150, Mismatches: 21, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
45 28 0.19
46 122 0.81
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.19
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
Found at i:93466904 original size:92 final size:91
Alignment explanation
Indices: 93466743--93466954 Score: 325
Period size: 92 Copynumber: 2.3 Consensus size: 91
93466733 ATGAAATGTG
* * *
93466743 TAAGACCATGGTTGAAAGATACCATGGCATGTGATATGAAACGAATAAGACCATGGTTGAAAGAT
1 TAAGACCATGGTTGAAAGATACCATGGCACGTGACATGAAAAGAATAAGACCATGGTTGAAAGAT
* *
93466808 ACCATGGCAACATGACGGGAAATGAA
66 ACCATGGCAACATGACAGAAAATGAA
*
93466834 TAAGACCATGGTTGAAAGATACCGTGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGC-ACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
*
93466899 TACCATGGCAACATGACAGAAAATGAG
65 TACCATGGCAACATGACAGAAAATGAA
* * *
93466926 TAAGACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
93466955 TCATGTCAAA
Statistics
Matches: 109, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
91 28 0.26
92 81 0.74
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.19
Consensus pattern (91 bp):
TAAGACCATGGTTGAAAGATACCATGGCACGTGACATGAAAAGAATAAGACCATGGTTGAAAGAT
ACCATGGCAACATGACAGAAAATGAA
Found at i:93469509 original size:39 final size:39
Alignment explanation
Indices: 93469466--93469552 Score: 131
Period size: 39 Copynumber: 2.2 Consensus size: 39
93469456 CCGGCAATTA
93469466 GCCTGCTAGGTA-ATAACCTGAACTTATCACCGACACGAG
1 GCCTGCTAGGTATA-AACCTGAACTTATCACCGACACGAG
* * *
93469505 GCCTGTTAGGTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGACACGAG
93469544 GCCTGCTAG
1 GCCTGCTAG
93469553 ACATTAAGTC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 42 0.98
40 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTATCACCGACACGAG
Found at i:93475437 original size:28 final size:27
Alignment explanation
Indices: 93475374--93475443 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
93475364 ATAGTGAGTC
93475374 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
93475401 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
93475429 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
93475444 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:93478908 original size:49 final size:47
Alignment explanation
Indices: 93478757--93478979 Score: 322
Period size: 47 Copynumber: 4.7 Consensus size: 47
93478747 ATGATATACA
* *
93478757 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
93478804 CATATGTGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCC-TAATGGCCAATGTGATGAATGTGAAAGTG
*
93478851 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
93478898 TATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
1 TA--TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
93478947 TATATATATGTGATAAGGCCTAATGGCTAATGT
1 --TATATATGTGATAAGGCCTAATGGCCAATGT
93478980 AAAATATATG
Statistics
Matches: 162, Mismatches: 8, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
46 1 0.01
47 88 0.54
49 71 0.44
51 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:93479019 original size:96 final size:96
Alignment explanation
Indices: 93478757--93479028 Score: 277
Period size: 96 Copynumber: 2.9 Consensus size: 96
93478747 ATGATATACA
* * * * * * *
93478757 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCAT--ATGTGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATAAATATGAAAGTGTATGCATATGTGATAAAG
*
93478820 CCGTATGGCCAATGTGATGAATGTGAAAGTG
66 CCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * * *
93478851 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATAAATATGAAAGTGTATGCATATGTGATAAAG
* * *
93478916 CCTAATGGCCGATGTGGTGAATGTGAAAGTG
66 CCGAATGGCCAATGTGATGAATGTGAAAGTG
* ** *
93478947 TATATATATGTGATAAGGCCTAATGGCTAATGT-A-AAATAT-ATGTGTGATATGCATATGTGGT
1 --TATATATGTGATAAGGCCTAATGGCCAATGTGATAAATATGA-AAGTG-TATGCATATGTGAT
*
93479009 AAAG-CGAATGGCTAATGTGA
62 AAAGCCGAATGGCCAATGTGA
93479029 ATGTTGTAAC
Statistics
Matches: 150, Mismatches: 22, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
94 46 0.31
95 1 0.01
96 58 0.39
97 16 0.11
98 29 0.19
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATAAATATGAAAGTGTATGCATATGTGATAAAG
CCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:93479124 original size:37 final size:36
Alignment explanation
Indices: 93479074--93479157 Score: 150
Period size: 37 Copynumber: 2.3 Consensus size: 36
93479064 GGAATATGTT
*
93479074 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
93479110 ACCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 -CCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
93479147 CCGGGTAAGAC
1 CCGGGTAAGAC
93479158 TTCGTAATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
36 11 0.24
37 35 0.76
ACGTcount: A:0.25, C:0.20, G:0.35, T:0.20
Consensus pattern (36 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:93487756 original size:40 final size:40
Alignment explanation
Indices: 93487629--93487758 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
93487619 ATGCTGGAAA
* *
93487629 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * * *
93487669 CTACATCCGGACTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
93487709 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
93487749 TTATATCCGG
1 TTATATCCGG
93487759 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:93491727 original size:40 final size:40
Alignment explanation
Indices: 93491682--93491811 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
93491672 CGGAATACAA
93491682 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
93491722 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
93491762 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
93491802 CCGGATATAA
1 CCGGATATAA
93491812 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:93498964 original size:40 final size:40
Alignment explanation
Indices: 93498919--93499086 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
93498909 CGGAATACAA
93498919 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
93498959 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
93498999 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
93499039 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
93499079 CCGGATAT
1 CCGGATAT
93499087 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:93500422 original size:28 final size:27
Alignment explanation
Indices: 93500359--93500428 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
93500349 ATAGTGAGTC
93500359 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
93500386 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
93500414 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
93500429 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:93503584 original size:28 final size:29
Alignment explanation
Indices: 93503515--93503644 Score: 122
Period size: 28 Copynumber: 4.6 Consensus size: 29
93503505 ATACTCGATT
** *
93503515 TCGCACACTTAGTGCCACGTATTT-AAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
* ** *** *
93503543 CCGCACACACAGTGCCATA-CCCTCGAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
* *
93503571 TCGCACACTTAGTGCCGTATTTTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
93503600 T-GCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
*
93503628 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
93503645 ATCTCGTCAC
Statistics
Matches: 79, Mismatches: 20, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
27 1 0.01
28 57 0.72
29 21 0.27
ACGTcount: A:0.24, C:0.34, G:0.17, T:0.25
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATATTTCCAGC
Found at i:93521755 original size:30 final size:28
Alignment explanation
Indices: 93521715--93521815 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
93521705 GACAAGATTG
* * *
93521715 GCACTGAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
93521745 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
93521773 GCACTAAGTGTGCGAGCTGAATATATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
93521802 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
93521816 GATTCACTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 25 0.40
29 20 0.32
30 17 0.27
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:93521779 original size:28 final size:29
Alignment explanation
Indices: 93521744--93521815 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
93521734 AAAATTGTAC
*
93521744 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-CTGAATATATAT
93521772 AGCACTAAGTGTGCGAGCTGAATATATAT
1 AGCACTAAGTGTGCGAGCTGAATATATAT
93521801 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
93521816 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAATATATAT
Found at i:93526256 original size:50 final size:48
Alignment explanation
Indices: 93526052--93526284 Score: 183
Period size: 50 Copynumber: 4.8 Consensus size: 48
93526042 GGTGTCGACA
** * * *
93526052 CCATGTCCTGGACATGGTCTTACACTAGCT-TACACATC-AAAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTA-CTCT-CATATCTCAAGCCGATG
* * * * ***
93526100 CCATGTCCTAGACATGGTCTTACATTGGCTTTCATTTAT-TGGTGCCGATG
1 CCATGTCCCAGACATGGTCTTACACT-ACTCTCA--TATCTCAAGCCGATG
* * *
93526150 CCATATCCCAGACATGGTCTTACACTGA--CACATA--TCAAGCCAATG
1 CCATGTCCCAGACATGGTCTTACACT-ACTCTCATATCTCAAGCCGATG
* *
93526195 CCATGTCCCAGACATGGCCTTACACTATCTCTCATATCTCGAGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTA-CTCTCATATCTC-AAGCCGATG
93526245 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
1 CCATGTCCCAGACATGGTCTTACACTA-CTCTCATATCTC
93526285 CCTAGCATCA
Statistics
Matches: 149, Mismatches: 25, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
44 1 0.01
45 31 0.21
46 2 0.01
47 5 0.03
48 30 0.20
49 3 0.02
50 77 0.52
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTACTCTCATATCTCAAGCCGATG
Found at i:93529495 original size:26 final size:26
Alignment explanation
Indices: 93529466--93529547 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
93529456 TGATAAAAAT
*
93529466 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93529492 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93529518 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93529544 TGAT
1 TGAT
93529548 GGGCATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:93536554 original size:26 final size:26
Alignment explanation
Indices: 93536525--93536606 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
93536515 TGATAAAAAT
*
93536525 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93536551 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93536577 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93536603 TGAT
1 TGAT
93536607 GGGCATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:93539464 original size:28 final size:29
Alignment explanation
Indices: 93539428--93539492 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
93539418 AAAGTGAATT
* *
93539428 TTGACAAAAATGTCAATT-AGGGATTAAA
1 TTGAGAAAAATGTAAATTAAGGGATTAAA
* *
93539456 TTGAGAAAAGTGTAAATTAAGGGGTTAAA
1 TTGAGAAAAATGTAAATTAAGGGATTAAA
*
93539485 TTGTGAAA
1 TTGAGAAA
93539493 TAAATGTGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 15 0.48
29 16 0.52
ACGTcount: A:0.45, C:0.03, G:0.23, T:0.29
Consensus pattern (29 bp):
TTGAGAAAAATGTAAATTAAGGGATTAAA
Found at i:93542460 original size:47 final size:46
Alignment explanation
Indices: 93542353--93542568 Score: 168
Period size: 46 Copynumber: 4.6 Consensus size: 46
93542343 TGTGTAGGCT
* ** *
93542353 AGTGTAAGACATGTCTGGGTCATGCATCAGCCA-CAATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CATTGAGATGAGAGCC
* * * * *
93542399 AGTGCAAGACCATGTCTGGGACATGACATCAGCATTGAGACGGGTGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCAGCATTGAGATGAGAGCC
* * *
93542447 AGTGTAAGACATGTCTGAGACATGCATCGGCCTTGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGATG-AGAGCC
* * * * * * *
93542493 AGTATAAGTCATGTCTGGGACATGCGTCGGC-TATAACATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCAT-TGAGATGAGAGCC
*
93542539 AATGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
93542569 GACACATTAC
Statistics
Matches: 135, Mismatches: 27, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
45 2 0.01
46 65 0.48
47 44 0.33
48 24 0.18
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGATGAGAGCC
Found at i:93546438 original size:50 final size:50
Alignment explanation
Indices: 93546360--93546459 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
93546350 AAGACCTAAC
*
93546360 CTTCTTAACATCTTCCACATAGGTTTGTCATCATGGATTGAGATTTTAAG
1 CTTCTTAACATCTTCCACATAGGCTTGTCATCATGGATTGAGATTTTAAG
93546410 CTTCTTAACATCTTCCACATAGGCTTGTCATCATGGATTGAGATTTTAAG
1 CTTCTTAACATCTTCCACATAGGCTTGTCATCATGGATTGAGATTTTAAG
93546460 TCCACGAACA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (50 bp):
CTTCTTAACATCTTCCACATAGGCTTGTCATCATGGATTGAGATTTTAAG
Found at i:93550624 original size:12 final size:12
Alignment explanation
Indices: 93550607--93550634 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
93550597 AGCAAAATAG
93550607 GTTTTTAGTGGC
1 GTTTTTAGTGGC
93550619 GTTTTTAGTGGC
1 GTTTTTAGTGGC
93550631 GTTT
1 GTTT
93550635 GAATGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.32, T:0.54
Consensus pattern (12 bp):
GTTTTTAGTGGC
Found at i:93550731 original size:40 final size:39
Alignment explanation
Indices: 93550640--93550731 Score: 107
Period size: 39 Copynumber: 2.3 Consensus size: 39
93550630 CGTTTGAATG
*
93550640 AAAAATGCCGCTAAAGAACGAGCATTAACGTCGCTTTTT
1 AAAAACGCCGCTAAAGAACGAGCATTAACGTCGCTTTTT
* * *
93550679 AAAAACAG-CGCTAAAGATCGAGTATTAGCGGT-GCTTTTTT
1 AAAAAC-GCCGCTAAAGAACGAGCATTAAC-GTCGC-TTTTT
93550719 AAAAACGCCGCTA
1 AAAAACGCCGCTA
93550732 TATGTACACC
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
39 26 0.58
40 19 0.42
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (39 bp):
AAAAACGCCGCTAAAGAACGAGCATTAACGTCGCTTTTT
Found at i:93551454 original size:15 final size:15
Alignment explanation
Indices: 93551434--93551481 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
93551424 ACTATTTTAA
93551434 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
93551449 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
* *
93551463 GGTTTATGGTTTAAG
1 GGTTTATGGATTATG
93551478 GGTT
1 GGTT
93551482 GGGGTTTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:93551454 original size:22 final size:21
Alignment explanation
Indices: 93551429--93551478 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
93551419 GAGTTACTAT
*
93551429 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
* *
93551451 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
93551472 TTTAAGG
1 TTTAAGG
93551479 GTTGGGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:93551702 original size:7 final size:7
Alignment explanation
Indices: 93551686--93551725 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
93551676 TATCATTATA
93551686 GTTTAGG
1 GTTTAGG
*
93551693 GTTTATG
1 GTTTAGG
93551700 GTTTAGG
1 GTTTAGG
* *
93551707 GTATATG
1 GTTTAGG
93551714 GTTTAGG
1 GTTTAGG
93551721 GTTTA
1 GTTTA
93551726 AAATGTATGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.47
Consensus pattern (7 bp):
GTTTAGG
Found at i:93551703 original size:14 final size:14
Alignment explanation
Indices: 93551681--93551725 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
93551671 TTAATTATCA
*
93551681 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
93551695 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
*
93551709 ATATGGTTTAGGGT
1 TTATGGTTTAGGGT
93551723 TTA
1 TTA
93551726 AAATGTATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:93551769 original size:15 final size:15
Alignment explanation
Indices: 93551749--93551796 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
93551739 ACTATATTAA
93551749 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
93551764 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
* *
93551778 GGTTTATGGTTTAAG
1 GGTTTATGGATTATG
93551793 GGTT
1 GGTT
93551797 GGGGTTTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:93551783 original size:14 final size:14
Alignment explanation
Indices: 93551744--93551783 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
93551734 GAGCTACTAT
* *
93551744 ATTAAGGTTTATGG
1 ATTATGGTTTAGGG
93551758 ATTATGGGTTTAGGG
1 ATTAT-GGTTTAGGG
93551773 ATTATGGTTTA
1 ATTATGGTTTA
93551784 TGGTTTAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (14 bp):
ATTATGGTTTAGGG
Found at i:93551802 original size:14 final size:15
Alignment explanation
Indices: 93551785--93551817 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
93551775 TATGGTTTAT
*
93551785 GGTTTAAGGGTT-GG
1 GGTTTAAGGCTTAGG
93551799 GGTTTAAGGCTTAGG
1 GGTTTAAGGCTTAGG
93551814 GGTT
1 GGTT
93551818 AGGGGTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.15, C:0.03, G:0.45, T:0.36
Consensus pattern (15 bp):
GGTTTAAGGCTTAGG
Done.