Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 309 of 770
Found at i:94515270 original size:45 final size:46
Alignment explanation
Indices: 94515059--94515452 Score: 376
Period size: 46 Copynumber: 8.7 Consensus size: 46
94515049 ATGATTGAAG
* * * * *
94515059 GATGCCACA-TGTCTTTCAACCATGGTCTTATTTA-TTCTCGACT-T
1 GATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTTTGA-TAT
* * *
94515103 GAATGCCATAATATCTTTCAA-TCCTGGTCTTATTCACTTTTTGATAT
1 G-ATGCCATAGTGTCTTTCAACT-ATGGTCTTATTCACTTTTTGATAT
* * * *
94515150 GATGCCATAGTGTCTTTCAACCATAGTCTTATACAGTTTTTGATAT
1 GATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTTTGATAT
* * * * * * *
94515196 AATGCCATAGTGTCTTTTAAATATAGTCTTATCCA-TTTTCGATAG
1 GATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTTTGATAT
* *
94515241 GATGCAATAGTGTCTTTCAACTATGGTCTTATTCATTTTTTGATAT
1 GATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTTTGATAT
* * *
94515287 GATGCCATAGTGTCTTTCAACTATGGCCTTATCCA-TTTTTGATAG
1 GATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTTTGATAT
* ***
94515332 GATTCCATAGTGTCTTT-AACTATGGTCTTATTCACTTTCCAATAT
1 GATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTTTGATAT
* * *
94515377 GATGCCATAGTGTCTTTCAACTATGGTATTACTCA---TCTGAATCAT
1 GATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTTTG-AT-AT
**
94515422 GATGCCATAGCATCTTTCAACTATGGTCTTA
1 GATGCCATAGTGTCTTTCAACTATGGTCTTA
94515453 CTCGATTGAA
Statistics
Matches: 291, Mismatches: 48, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
43 2 0.01
44 18 0.06
45 121 0.42
46 143 0.49
47 7 0.02
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (46 bp):
GATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTTTGATAT
Found at i:94515281 original size:91 final size:91
Alignment explanation
Indices: 94515053--94515452 Score: 368
Period size: 91 Copynumber: 4.4 Consensus size: 91
94515043 ATAGTAATGA
* * * * * *
94515053 TTGA-AGGATGCCACA-TGTCTTTCAACCATGGTCTTATTTA-TTCTCGACT-TGAATGCCATAA
1 TTGATAGGATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTTTGA-TATG-ATGCCATAG
* * * *
94515114 TATCTTTC-AATCCTGGTCTTATTCACTTT
64 TGTCTTTCAAAT-ATAGTCTTATCCA-TTT
* * * * * *
94515143 TTGATATGATGCCATAGTGTCTTTCAACCATAGTCTTATACAGTTTTTGATATAATGCCATAGTG
1 TTGATAGGATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTTTGATATGATGCCATAGTG
*
94515208 TCTTTTAAATATAGTCTTATCCATTT
66 TCTTTCAAATATAGTCTTATCCATTT
* * *
94515234 TCGATAGGATGCAATAGTGTCTTTCAACTATGGTCTTATTCATTTTTTGATATGATGCCATAGTG
1 TTGATAGGATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTTTGATATGATGCCATAGTG
* * *
94515299 TCTTTCAACTATGGCCTTATCCATTT
66 TCTTTCAAATATAGTCTTATCCATTT
* ***
94515325 TTGATAGGATTCCATAGTGTCTTT-AACTATGGTCTTATTCACTTTCCAATATGATGCCATAGTG
1 TTGATAGGATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTTTGATATGATGCCATAGTG
* * *
94515389 TCTTTCAACTATGGTATTA-CTCA--T
66 TCTTTCAAATATAGTCTTATC-CATTT
* * **
94515413 CTGAATCATGATGCCATAGCATCTTTCAACTATGGTCTTA
1 TTG-AT-AGGATGCCATAGTGTCTTTCAACTATGGTCTTA
94515453 CTCGATTGAA
Statistics
Matches: 261, Mismatches: 40, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
88 3 0.01
89 3 0.01
90 74 0.28
91 125 0.48
92 47 0.18
93 9 0.03
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (91 bp):
TTGATAGGATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTTTGATATGATGCCATAGTG
TCTTTCAAATATAGTCTTATCCATTT
Found at i:94515469 original size:90 final size:88
Alignment explanation
Indices: 94515197--94515476 Score: 246
Period size: 90 Copynumber: 3.1 Consensus size: 88
94515187 TTTTGATATA
* * * * * **
94515197 ATGCCATAGTGTCTTTTAAATATAGTC-TTATCCATTTTCGATAGGATGCAATAGTGTCTTTCAA
1 ATGCCATAGTGTCTTTCAACTAT-GGCATTATCCATTCT-GATAGGATGCCATAGCATCTTTCAA
***
94515261 CTATGGTCTTATTCATTTTTTGATATG
64 CTATGGTCTTATTCATTCAAT-A-ATG
* * * **
94515288 ATGCCATAGTGTCTTTCAACTATGGCCTTATCCATTTTTGATAGGATTCCATAGTGTCTTT-AAC
1 ATGCCATAGTGTCTTTCAACTATGGCATTATCCA-TTCTGATAGGATGCCATAGCATCTTTCAAC
94515352 TATGGTCTTATTCACTTTCCAAT-ATG
65 TATGGTCTTATTCA--TT-CAATAATG
* *
94515378 ATGCCATAGTGTCTTTCAACTATGGTATTA-CTCA-TCTGAATCATGATGCCATAGCATCTTTCA
1 ATGCCATAGTGTCTTTCAACTATGGCATTATC-CATTCTG-AT-AGGATGCCATAGCATCTTTCA
* *
94515441 ACTATGGTCTTACTCGATTGAATAATG
63 ACTATGGTCTTATTC-ATTCAATAATG
94515468 ATGCCATAG
1 ATGCCATAG
94515477 CATGTAACAC
Statistics
Matches: 161, Mismatches: 17, Indels: 23
0.80 0.08 0.11
Matches are distributed among these distances:
88 3 0.02
89 6 0.04
90 81 0.50
91 63 0.39
92 7 0.04
93 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (88 bp):
ATGCCATAGTGTCTTTCAACTATGGCATTATCCATTCTGATAGGATGCCATAGCATCTTTCAACT
ATGGTCTTATTCATTCAATAATG
Found at i:94515477 original size:45 final size:45
Alignment explanation
Indices: 94515375--94515479 Score: 158
Period size: 45 Copynumber: 2.3 Consensus size: 45
94515365 ACTTTCCAAT
** *
94515375 ATGATGCCATAGTGTCTTTCAACTATGGTATTACTCATCTGAATC
1 ATGATGCCATAGCATCTTTCAACTATGGTATTACTCATCTGAATA
*
94515420 ATGATGCCATAGCATCTTTCAACTATGGTCTTACTCGAT-TGAATA
1 ATGATGCCATAGCATCTTTCAACTATGGTATTACTC-ATCTGAATA
94515465 ATGATGCCATAGCAT
1 ATGATGCCATAGCAT
94515480 GTAACACCCC
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
45 53 0.96
46 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (45 bp):
ATGATGCCATAGCATCTTTCAACTATGGTATTACTCATCTGAATA
Found at i:94517967 original size:51 final size:51
Alignment explanation
Indices: 94517912--94518019 Score: 182
Period size: 51 Copynumber: 2.1 Consensus size: 51
94517902 TGATACAAAT
94517912 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
* *
94517963 TGATAATGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
94518014 TGATAA
1 TGATAA
94518020 GAATTTCATG
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
50 24 0.44
51 30 0.56
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (51 bp):
TGATAATGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
Found at i:94518006 original size:26 final size:25
Alignment explanation
Indices: 94517912--94518019 Score: 180
Period size: 25 Copynumber: 4.2 Consensus size: 25
94517902 TGATACAAAT
94517912 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
94517938 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
*
94517963 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTCCA
*
94517988 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
94518014 TGATAA
1 TGATAA
94518020 GAATTTCATG
Statistics
Matches: 80, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
25 49 0.61
26 31 0.39
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:94520041 original size:136 final size:136
Alignment explanation
Indices: 94519797--94520081 Score: 536
Period size: 136 Copynumber: 2.1 Consensus size: 136
94519787 GAGTAGTCTC
94519797 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
94519862 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
94519927 CTGTTA
131 CTGTTA
94519933 CCCAAATGGGCTTGCATATGTT-TATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTAT-TGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
94519997 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
94520062 ACTGTTA
130 ACTGTTA
**
94520069 CCTGAATGGGCTT
1 CCCAAATGGGCTT
94520082 AGGCCCAATG
Statistics
Matches: 146, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
135 1 0.01
136 145 0.99
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:94520086 original size:64 final size:64
Alignment explanation
Indices: 94519876--94520088 Score: 159
Period size: 64 Copynumber: 3.2 Consensus size: 64
94519866 TCTGAATAAG
**
94519876 GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACCCAAAT
1 GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACCTGAAT
* ** * * * *
94519940 GGGCT--TGCATATGTTTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCA-T---ACTG
1 GGGCTAAGGCCCA-GTTTAT--TG-T--A---A-TCTGAAAAGGG-CTCTGGCCCAGTACCACTG
*
94519999 TTATCTGAAT
55 TTACCTGAAT
94520009 AAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACCTGA
1 ---GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACCTGA
94520074 AT
63 AT
*
94520076 GGGCTTAGGCCCA
1 GGGCTAAGGCCCA
94520089 ATGGGCTTGA
Statistics
Matches: 110, Mismatches: 19, Indels: 40
0.65 0.11 0.24
Matches are distributed among these distances:
62 3 0.03
63 14 0.13
64 27 0.25
65 3 0.03
66 1 0.01
67 13 0.12
68 2 0.02
69 11 0.10
70 1 0.01
71 3 0.03
72 15 0.14
73 14 0.13
74 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (64 bp):
GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTACCTGAAT
Found at i:94523842 original size:26 final size:26
Alignment explanation
Indices: 94523806--94523915 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
94523796 TGATACAAAT
94523806 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
94523832 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
94523858 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
94523884 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
94523910 TGATAA
1 TGATAA
94523916 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:94525978 original size:136 final size:135
Alignment explanation
Indices: 94525698--94525981 Score: 532
Period size: 136 Copynumber: 2.1 Consensus size: 135
94525688 GAGTAGTCTC
94525698 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
94525763 GTTATCGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
66 GTTATCGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
94525828 TGTTA
131 TGTTA
94525833 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
*
94525898 GTTATCTGAATAAGGGGTTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATC-GAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
94525963 CTGTTA
130 CTGTTA
**
94525969 CCTGAATGGGCTT
1 CCCAAATGGGCTT
94525982 AGGCCCAATG
Statistics
Matches: 145, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
135 71 0.49
136 74 0.51
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (135 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
TGTTA
Found at i:94527306 original size:14 final size:16
Alignment explanation
Indices: 94527268--94527299 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
94527258 ATAAAAAATA
94527268 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
94527283 ATATAAAAATTACATT
1 ATATAAAAATTACATT
94527299 A
1 A
94527300 AAAAAATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:94527453 original size:103 final size:103
Alignment explanation
Indices: 94527262--94527582 Score: 359
Period size: 103 Copynumber: 3.1 Consensus size: 103
94527252 AAATAAATAA
** *
94527262 AAAATAA-TATAAAATTACATTATATAAAAATTACATTAAAAAAATCACAAAACACTAAACTAAA
1 AAAATAACTATAAAATTATTTTTTATAAAAATTACATTAAAAAAATCACAAAACACTAAACTAAA
* * *
94527326 CTCTAACAATTTATATAACGTAATCATAGATTACTAAC
66 CACTAACAATTTATATAACCTAATCATAAATTACTAAC
* *
94527364 AAAATAACTATAAAATTATTTTTTTTACAAAA-TACATTATTAAAAATCA-AAAACAC-ATAACT
1 AAAATAACTATAAAATTATTTTTTATA-AAAATTACATTA-AAAAAATCACAAAACACTA-AACT
94527426 AAACACTAACAATTTATATAACCTAATCATAAATTACTAAC
63 AAACACTAACAATTTATATAACCTAATCATAAATTACTAAC
* * *
94527467 AAAATAACTATAAAATTA-TTTTTAAAAAAATTTGCATTACTAAAAAAATCACAAAACCCTAAAC
1 AAAATAACTATAAAATTATTTTTTATAAAAA-TTACA-T--TAAAAAAATCACAAAACACT-AA-
* * *
94527531 CACTAAACACTAACAA-AT-TGTAACCTAATCCCATAAATTATTAAC
60 -ACTAAACACTAACAATTTATATAACCTAAT--CATAAATTACTAAC
94527576 AAAATAA
1 AAAATAA
94527583 ATAACTATAA
Statistics
Matches: 187, Mismatches: 16, Indels: 25
0.82 0.07 0.11
Matches are distributed among these distances:
101 4 0.02
102 14 0.07
103 92 0.49
104 13 0.07
105 8 0.04
106 8 0.04
107 11 0.06
108 2 0.01
109 35 0.19
ACGTcount: A:0.55, C:0.15, G:0.01, T:0.29
Consensus pattern (103 bp):
AAAATAACTATAAAATTATTTTTTATAAAAATTACATTAAAAAAATCACAAAACACTAAACTAAA
CACTAACAATTTATATAACCTAATCATAAATTACTAAC
Found at i:94528025 original size:14 final size:14
Alignment explanation
Indices: 94527999--94528044 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
94527989 CCCTTTTTTT
94527999 TTCTTTC-TTCTTC
1 TTCTTTCTTTCTTC
94528012 TTC-TTCTTTTCTTC
1 TTCTTTC-TTTCTTC
*
94528026 TCCTTTCTTTCTTTC
1 TTCTTTCTTTC-TTC
94528041 TTCT
1 TTCT
94528045 GGTGGATGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 3 0.11
13 3 0.11
14 12 0.44
15 9 0.33
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (14 bp):
TTCTTTCTTTCTTC
Found at i:94528829 original size:21 final size:21
Alignment explanation
Indices: 94528817--94528857 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
94528807 CACGACCACA
*
94528817 GTTCCACAAGCCACAAACAAG
1 GTTCCACAAGCCACAACCAAG
94528838 GTTCCACAAGCCACAACCAA
1 GTTCCACAAGCCACAACCAA
94528858 TGTCAGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.37, G:0.12, T:0.10
Consensus pattern (21 bp):
GTTCCACAAGCCACAACCAAG
Found at i:94529235 original size:16 final size:16
Alignment explanation
Indices: 94529216--94529247 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
94529206 TACTAATCAA
*
94529216 AGTTTCTATGTTTCTG
1 AGTTTCCATGTTTCTG
94529232 AGTTTCCATGTTTCTG
1 AGTTTCCATGTTTCTG
94529248 CCTGTCTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.16, G:0.19, T:0.53
Consensus pattern (16 bp):
AGTTTCCATGTTTCTG
Found at i:94529476 original size:36 final size:36
Alignment explanation
Indices: 94529416--94529488 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
94529406 ATATATATAT
* * *
94529416 ATATTAATGCTTATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
*
94529452 ATATTAATGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
94529488 A
1 A
94529489 GTCATGCGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.32, C:0.10, G:0.10, T:0.49
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:94529526 original size:43 final size:42
Alignment explanation
Indices: 94529479--94529559 Score: 128
Period size: 42 Copynumber: 1.9 Consensus size: 42
94529469 TAATGTTTTG
*
94529479 CTTCATTTAAGTCATGCGCATAA-TGCATATATATTCCATTTAA
1 CTTCATTTAAGTCAT--GCATAATTGCATATATATACCATTTAA
94529522 CTTCATTTAAGTCATGCATAATTGCATATATATACCAT
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCAT
94529560 AATTTGCAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
41 6 0.17
42 15 0.42
43 15 0.42
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.40
Consensus pattern (42 bp):
CTTCATTTAAGTCATGCATAATTGCATATATATACCATTTAA
Found at i:94529614 original size:59 final size:59
Alignment explanation
Indices: 94529547--94529673 Score: 254
Period size: 59 Copynumber: 2.2 Consensus size: 59
94529537 GCATAATTGC
94529547 ATATATATACCATAATTTGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATAT
1 ATATATATACCATAATTTGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATAT
94529606 ATATATATACCATAATTTGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATAT
1 ATATATATACCATAATTTGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATAT
94529665 ATATATATA
1 ATATATATA
94529674 TATATATTAA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 68 1.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.38
Consensus pattern (59 bp):
ATATATATACCATAATTTGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATAT
Found at i:94529658 original size:2 final size:2
Alignment explanation
Indices: 94529651--94529680 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
94529641 TAAGCCAAGC
94529651 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94529681 TAATGCATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94529717 original size:36 final size:36
Alignment explanation
Indices: 94529677--94529749 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
94529667 ATATATATAT
* *
94529677 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
* *
94529713 ATATTAATGCATATATATAATGTTTTGCTTTATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
94529749 A
1 A
94529750 GTCATGCGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:94529807 original size:261 final size:261
Alignment explanation
Indices: 94529398--94529868 Score: 915
Period size: 261 Copynumber: 1.8 Consensus size: 261
94529388 TAAGTCAAGC
*
94529398 ATATATATATATATATATATATTAATGCTTATGTATACTGTTTAGCTTCATTTAATATTAATGCA
1 ATATATATATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCA
94529463 TATATATAATGTTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCAT
66 TATATATAATGTTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCAT
*
94529528 TTAAGTCATGCATAATTGCATATATATACCATAATTTGCAGGTTTAGCTTGAGTTAAGCCAAGCA
131 TTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCA
94529593 TATATATATATATATATATATACCATAATTTGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATA
196 TATATATATATATATATATATACCATAATTTGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATA
94529658 T
261 T
94529659 ATATATATATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCA
1 ATATATATATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCA
*
94529724 TATATATAATGTTTTGCTTTATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCAT
66 TATATATAATGTTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCAT
94529789 TTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCA
131 TTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCA
94529854 TATATATATATATAT
196 TATATATATATATAT
94529869 TAATGCATAT
Statistics
Matches: 207, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
261 207 1.00
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (261 bp):
ATATATATATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCA
TATATATAATGTTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCAT
TTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCA
TATATATATATATATATATATACCATAATTTGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATA
T
Found at i:94529913 original size:36 final size:36
Alignment explanation
Indices: 94529865--94529937 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
94529855 ATATATATAT
* * * *
94529865 ATATTAATGCATATGTATACTGTTTAGCTTTATTTA
1 ATATTAAGGCATATATATAATATTTAGCTTTATTTA
*
94529901 ATATTAAGGCATATATATAATATTTTGCTTTATTTA
1 ATATTAAGGCATATATATAATATTTAGCTTTATTTA
94529937 A
1 A
94529938 GTCATGCGCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.49
Consensus pattern (36 bp):
ATATTAAGGCATATATATAATATTTAGCTTTATTTA
Found at i:94530081 original size:200 final size:202
Alignment explanation
Indices: 94529606--94530355 Score: 1253
Period size: 188 Copynumber: 3.8 Consensus size: 202
94529596 ATATATATAT
*
94529606 ATATATATACCATAATTTGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATATATATAT
1 ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATATATATAT
*
94529671 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGT
66 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGT
*
94529736 TTTGCTTTATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
131 TTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
94529801 TAATTGC
196 TAATTGC
94529808 ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGC--------------ATATAT
1 ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATATATATAT
* *
94529859 ATATATATATTAATGCATATGTATACTGTTTAGCTTTATTTAATATTAAGGCATATATATAATAT
66 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGT
*
94529924 TTTGCTTTATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
131 TTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
*
94529989 AAATTGC
196 TAATTGC
*
94529996 ATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGCCAAGCATATATATATATAT-T-TAT
1 ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATATATATAT
94530059 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGT
66 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGT
*
94530124 TTTGCTTCATTTAAGTCATGTGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
131 TTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
94530189 TAATTGC
196 TAATTGC
*
94530196 ATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATATATATAT
1 ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGC----ATATATATATATATAT
*
94530261 ATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATA
62 ATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATA
94530326 ATGTTTTGCTTCATTTAAGTCATGCGCATA
127 ATGTTTTGCTTCATTTAAGTCATGCGCATA
94530356 TATATATATA
Statistics
Matches: 513, Mismatches: 15, Indels: 36
0.91 0.03 0.06
Matches are distributed among these distances:
188 183 0.36
200 178 0.35
201 1 0.00
202 44 0.09
204 14 0.03
205 1 0.00
206 92 0.18
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (202 bp):
ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATATATATAT
ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGT
TTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
TAATTGC
Found at i:94530104 original size:388 final size:391
Alignment explanation
Indices: 94529606--94530355 Score: 1236
Period size: 388 Copynumber: 1.9 Consensus size: 391
94529596 ATATATATAT
* *
94529606 ATATATATACCATAATTTGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATATATATAT
1 ATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGCCAAGCATATATATATATATATATAT
*
94529671 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGT
66 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGT
*
94529736 TTTGCTTTATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
131 TTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
94529801 TAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGC-ATATATATATAT
196 TAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCAATATATATATAT
*
94529865 ATATTAATGCATATGTATACTGTTTAGCTTTATTTAATATTAAGGCATATATATAATATTTTGCT
261 ATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATATTTTGCT
*
94529930 TTATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCAAAATTG
326 TCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCAAAATTG
94529995 C
391 C
94529996 ATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGCCAAGCATATATATATATAT-T-TAT
1 ATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGCCAAGCATATATATATATATATATAT
94530059 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGT
66 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGT
*
94530124 TTTGCTTCATTTAAGTCATGTGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
131 TTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
*
94530189 TAATTGCATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATA
196 TAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGC-------------
*
94530254 TATATATATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCAT
248 ---A-ATATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
*
94530319 ATATATAATGTTTTGCTTCATTTAAGTCATGCGCATA
309 ATATATAATATTTTGCTTCATTTAAGTCATGCGCATA
94530356 TATATATATA
Statistics
Matches: 332, Mismatches: 10, Indels: 20
0.92 0.03 0.06
Matches are distributed among these distances:
388 181 0.55
389 1 0.00
390 57 0.17
406 93 0.28
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (391 bp):
ATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGCCAAGCATATATATATATATATATAT
ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGT
TTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCA
TAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCAATATATATATAT
ATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATATTTTGCT
TCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCAAAATTG
C
Found at i:94530106 original size:36 final size:36
Alignment explanation
Indices: 94530065--94530137 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
94530055 TTATATATAT
* * *
94530065 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
*
94530101 ATATTAAGGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
94530137 A
1 A
94530138 GTCATGTGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.47
Consensus pattern (36 bp):
ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
Found at i:94530248 original size:2 final size:2
Alignment explanation
Indices: 94530241--94530274 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
94530231 TAAGCCAAGC
94530241 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94530275 TAATGCATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94530312 original size:36 final size:36
Alignment explanation
Indices: 94530271--94530343 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
94530261 ATATATATAT
* *
94530271 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
*
94530307 ATATTAATGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
94530343 A
1 A
94530344 GTCATGCGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:94530360 original size:2 final size:2
Alignment explanation
Indices: 94530353--94530390 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
94530343 AGTCATGCGC
94530353 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94530391 GTAACACCCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94531232 original size:46 final size:46
Alignment explanation
Indices: 94531065--94531283 Score: 242
Period size: 46 Copynumber: 5.0 Consensus size: 46
94531055 TTTGACGTGA
* * * * * *
94531065 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * **
94531111 TGCCATGGTATCTTTCAACCAT-GTCTTATTCTTTTCATGTCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
94531156 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
94531202 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
94531240 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
94531284 AGAGCACACT
Statistics
Matches: 149, Mismatches: 14, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
38 33 0.22
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 7 0.05
45 37 0.25
46 66 0.44
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:94531248 original size:38 final size:38
Alignment explanation
Indices: 94531197--94531272 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
94531187 CATCTCATAT
94531197 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
94531235 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
94531273 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:94533417 original size:11 final size:11
Alignment explanation
Indices: 94533401--94533448 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
94533391 CTTTATATAC
94533401 TAATAAAATAA
1 TAATAAAATAA
*
94533412 TAATAAAATATCT
1 TAATAAAATA--A
* *
94533425 TATTAAAATAT
1 TAATAAAATAA
94533436 TAATAAAATAA
1 TAATAAAATAA
94533447 TA
1 TA
94533449 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:94534003 original size:16 final size:17
Alignment explanation
Indices: 94533982--94534024 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
94533972 TTAAGTCATG
*
94533982 CATATATTATA-TTATA
1 CATATATTATAGATATA
94533998 CATATA-TATAGATATA
1 CATATATTATAGATATA
*
94534014 TATATATTATA
1 CATATATTATA
94534025 AAAGCCAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 4 0.17
16 15 0.65
17 4 0.17
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (17 bp):
CATATATTATAGATATA
Found at i:94534554 original size:36 final size:36
Alignment explanation
Indices: 94534507--94534580 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
94534497 TTTTATAAGT
94534507 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
1 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
94534543 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
1 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
94534579 AA
1 AA
94534581 CGCTTTAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.22, C:0.08, G:0.16, T:0.54
Consensus pattern (36 bp):
AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
Found at i:94537475 original size:21 final size:21
Alignment explanation
Indices: 94537449--94537490 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
94537439 ATTTTGCATA
94537449 CCTAAAATAGTTCTTTACATG
1 CCTAAAATAGTTCTTTACATG
94537470 CCTAAAATAGTTCTTTACATG
1 CCTAAAATAGTTCTTTACATG
94537491 TAATTATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (21 bp):
CCTAAAATAGTTCTTTACATG
Found at i:94537518 original size:21 final size:22
Alignment explanation
Indices: 94537494--94537536 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
94537484 TTACATGTAA
* *
94537494 TTATTTAG-TAAATTATATTGT
1 TTATGTAGTTAAATAATATTGT
94537515 TTATGTAGTTAAATAATATTGT
1 TTATGTAGTTAAATAATATTGT
94537537 AATTCGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TTATGTAGTTAAATAATATTGT
Found at i:94540244 original size:26 final size:26
Alignment explanation
Indices: 94540206--94540263 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
94540196 CATGAAATTC
94540206 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
94540232 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
94540258 TTATCA
1 TTATCA
94540264 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:94545994 original size:26 final size:26
Alignment explanation
Indices: 94545956--94546013 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
94545946 CATGAAATTC
94545956 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
94545982 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
94546008 TTATCA
1 TTATCA
94546014 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:94547536 original size:32 final size:33
Alignment explanation
Indices: 94547479--94547541 Score: 85
Period size: 32 Copynumber: 1.9 Consensus size: 33
94547469 ATGTCTCATA
* *
94547479 TTTGTTCAATTCTTTTAATTTAAATTGTTGATT
1 TTTGTTCAATTCTTTTAATATAAATTATTGATT
94547512 TTTGTT-AATT-TTTTACATATAAATTATTGA
1 TTTGTTCAATTCTTTTA-ATATAAATTATTGA
94547542 ATTGTTAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 5 0.19
32 16 0.59
33 6 0.22
ACGTcount: A:0.29, C:0.05, G:0.08, T:0.59
Consensus pattern (33 bp):
TTTGTTCAATTCTTTTAATATAAATTATTGATT
Found at i:94549631 original size:27 final size:27
Alignment explanation
Indices: 94549597--94549654 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
94549587 TCCTTCTTAC
94549597 TTTT-GAAAAT-ATTTTCTATTTTTCAT
1 TTTTAGAAAATAATTTT-TATTTTTCAT
* *
94549623 TTTTAGAAATTAATTTTTATTTTTTAT
1 TTTTAGAAAATAATTTTTATTTTTCAT
94549650 TTTTA
1 TTTTA
94549655 AAAGTTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 4 0.14
27 19 0.68
28 5 0.18
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (27 bp):
TTTTAGAAAATAATTTTTATTTTTCAT
Found at i:94549662 original size:27 final size:28
Alignment explanation
Indices: 94549607--94549662 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 28
94549597 TTTTGAAAAT
94549607 ATTTTCTATTTTTCATTTTTAGAAATTA
1 ATTTTCTATTTTTCATTTTTAGAAATTA
*
94549635 ATTTT-TATTTTTTATTTTTA-AAAGTTA
1 ATTTTCTATTTTTCATTTTTAGAAA-TTA
94549662 A
1 A
94549663 AAAATATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 3 0.12
27 18 0.69
28 5 0.19
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (28 bp):
ATTTTCTATTTTTCATTTTTAGAAATTA
Found at i:94550192 original size:5 final size:5
Alignment explanation
Indices: 94550182--94550207 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
94550172 AGTTTTTACC
94550182 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
94550208 CCCCATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:94550361 original size:2 final size:2
Alignment explanation
Indices: 94550356--94550384 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
94550346 ATATAAAAAT
94550356 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
94550385 TAGGTTATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:94550790 original size:26 final size:27
Alignment explanation
Indices: 94550740--94550790 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
94550730 TACCAATCCT
*
94550740 TTCTTTTAATTTTATAGTATAATATTC
1 TTCTTTTAATTTTATAATATAATATTC
* *
94550767 TTCTTTT-ATTTTTTAATATTATAT
1 TTCTTTTAATTTTATAATATAATAT
94550791 ATTACAACAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 14 0.67
27 7 0.33
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (27 bp):
TTCTTTTAATTTTATAATATAATATTC
Found at i:94552706 original size:23 final size:23
Alignment explanation
Indices: 94552656--94552725 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
94552646 GTATCGCACC
*
94552656 AAAGTGCCAATAACAGAAGCAC-
1 AAAGTGCCAATAACAGAAGTACT
*
94552678 AGAAGTGCCAGTAACAGAAGTACT
1 A-AAGTGCCAATAACAGAAGTACT
* * *
94552702 AAAGTACTAATAACAAAAGTACT
1 AAAGTGCCAATAACAGAAGTACT
94552725 A
1 A
94552726 TGCCCGAAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
22 1 0.03
23 38 0.95
24 1 0.03
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.16
Consensus pattern (23 bp):
AAAGTGCCAATAACAGAAGTACT
Found at i:94553632 original size:44 final size:42
Alignment explanation
Indices: 94553584--94553787 Score: 187
Period size: 44 Copynumber: 4.7 Consensus size: 42
94553574 GCCGCTAAAA
* * *
94553584 TTAGCAGCGCTTGTTTGAAAAAACGCCGCTAAAGACCAGGACTT
1 TTAGCGGCGCTT-TTT-AAAAAACGCTGCTAAAGACCAAGACTT
*
94553628 TTAGCGGCGCTTTTTTAAAAAAATGCTGCTAAAGACCAAGACTT
1 TTAGCGGCGC-TTTTT-AAAAAACGCTGCTAAAGACCAAGACTT
* * *
94553672 TTAGCGGCACTTTTTAAAAAACGCTGCTAAAGATCATGACTT
1 TTAGCGGCGCTTTTTAAAAAACGCTGCTAAAGACCAAGACTT
* * ** * *
94553714 TTAGCGGTG-TTTTTATAGAAAGCGCCACTAAAGA-CAGGGACCT
1 TTAGCGGCGCTTTTTA-A-AAAACGCTGCTAAAGACCA-AGACTT
* *
94553757 TTAGTGGCGCTTTTATAAAAAACGCCGCTAA
1 TTAGCGGCGCTTTT-TAAAAAACGCTGCTAA
94553788 TTTGCCCAGT
Statistics
Matches: 134, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
41 6 0.04
42 34 0.25
43 40 0.30
44 50 0.37
45 4 0.03
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (42 bp):
TTAGCGGCGCTTTTTAAAAAACGCTGCTAAAGACCAAGACTT
Found at i:94553776 original size:86 final size:86
Alignment explanation
Indices: 94553601--94553787 Score: 209
Period size: 86 Copynumber: 2.2 Consensus size: 86
94553591 CGCTTGTTTG
* **
94553601 AAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTTTAAAAAAATGCTGCTAAAGACCA
1 AAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTTTAAAAAAACGCCACTAAAGACCA
*
94553666 AGACTTTTAGCGGCACTTTTT
66 AGACCTTTAGCGGCACTTTTT
* * * * * *
94553687 AAAAAACGCTGCTAAAGATCATGACTTTTAGCGGTG--TTTTTATAGAAAGCGCCACTAAAGA-C
1 AAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTTTA-AAAAAACGCCACTAAAGACC
* * *
94553749 AGGGACCTTTAGTGGCGCTTTTAT
65 A-AGACCTTTAGCGGCACTTTT-T
94553773 AAAAAACGCCGCTAA
1 AAAAAACGCCGCTAA
94553788 TTTGCCCAGT
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
84 8 0.10
85 29 0.35
86 47 0.56
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (86 bp):
AAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTTTAAAAAAACGCCACTAAAGACCA
AGACCTTTAGCGGCACTTTTT
Found at i:94558509 original size:9 final size:9
Alignment explanation
Indices: 94558495--94558566 Score: 72
Period size: 9 Copynumber: 7.7 Consensus size: 9
94558485 ATGTATTAGT
94558495 TAAGTTATG
1 TAAGTTATG
94558504 TAAGTTGTTATG
1 TAA---GTTATG
*
94558516 TACGTTATG
1 TAAGTTATG
*
94558525 TGAGTTATG
1 TAAGTTATG
*
94558534 TAAATTATG
1 TAAGTTATG
*
94558543 TAAGTTTTG
1 TAAGTTATG
*
94558552 TGAGTTATG
1 TAAGTTATG
94558561 TAAGTT
1 TAAGTT
94558567 GTTATGTAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
9 42 0.84
12 8 0.16
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:94558542 original size:39 final size:38
Alignment explanation
Indices: 94558499--94558584 Score: 104
Period size: 39 Copynumber: 2.2 Consensus size: 38
94558489 ATTAGTTAAG
94558499 TTATGTAAGTTGTTATGTACGTTATGT-G-AGTTATGTAAA
1 TTATGTAAGTT-TTATG-A-GTTATGTAGTAGTTATGTAAA
* *
94558538 TTATGTAAGTTTTGTGAGTTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTTTTATGAGTTATGT-AGTAGTTATGTAAA
94558577 TTATGTAA
1 TTATGTAA
94558585 CTTTAAACTA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
36 7 0.17
37 1 0.02
38 5 0.12
39 29 0.69
ACGTcount: A:0.29, C:0.01, G:0.22, T:0.48
Consensus pattern (38 bp):
TTATGTAAGTTTTATGAGTTATGTAGTAGTTATGTAAA
Found at i:94558553 original size:27 final size:27
Alignment explanation
Indices: 94558511--94558563 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
94558501 ATGTAAGTTG
*
94558511 TTATGTACGTTATGTGAGTTATGTAAA
1 TTATGTAAGTTATGTGAGTTATGTAAA
*
94558538 TTATGTAAGTTTTGTGAGTTATGTAA
1 TTATGTAAGTTATGTGAGTTATGTAA
94558564 GTTGTTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.28, C:0.02, G:0.23, T:0.47
Consensus pattern (27 bp):
TTATGTAAGTTATGTGAGTTATGTAAA
Found at i:94559036 original size:241 final size:241
Alignment explanation
Indices: 94558606--94559059 Score: 881
Period size: 241 Copynumber: 1.9 Consensus size: 241
94558596 ATGATATATG
* *
94558606 CTTTTTCCAAGTCTTTTTGAATTTTTTAAGATTCATCATGCGTGGCGTTGTTACACCTAGGGAGG
1 CTTTTTCCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCATTGTTACACCTAGGGAGG
94558671 ATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAAT
66 ATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAAT
94558736 CTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
131 CTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
94558801 AAGCTACATGGTAATAAATATTCAATAGTAAATGAGCTCGATAGAA
196 AAGCTACATGGTAATAAATATTCAATAGTAAATGAGCTCGATAGAA
*
94558847 CTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCATTGTTACACCTAGGGAGG
1 CTTTTTCCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCATTGTTACACCTAGGGAGG
94558912 ATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAAT
66 ATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAAT
94558977 CTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
131 CTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
94559042 AAGCTACATGGTAATAAA
196 AAGCTACATGGTAATAAA
94559060 ATTAATTCAT
Statistics
Matches: 210, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
241 210 1.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (241 bp):
CTTTTTCCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCATTGTTACACCTAGGGAGG
ATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAAT
CTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGC
AAGCTACATGGTAATAAATATTCAATAGTAAATGAGCTCGATAGAA
Found at i:94559218 original size:23 final size:23
Alignment explanation
Indices: 94559192--94559241 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
94559182 GTTCAAGTTT
*
94559192 ATTTAAAGGGCTGTAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
94559215 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
94559238 ATTT
1 ATTT
94559242 GATTAATGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (23 bp):
ATTTAAAGGGCTGCAATTCATAC
Found at i:94559649 original size:2 final size:2
Alignment explanation
Indices: 94559642--94559674 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
94559632 ACATACAATA
94559642 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
94559675 ACAATTTGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:94560320 original size:14 final size:13
Alignment explanation
Indices: 94560301--94560330 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
94560291 CAATATAATT
94560301 TTACTTCATATATA
1 TTACTTCATATA-A
94560315 TTACTTCATATAA
1 TTACTTCATATAA
94560328 TTA
1 TTA
94560331 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:94566735 original size:19 final size:20
Alignment explanation
Indices: 94566696--94566747 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
94566686 TTTCGATTTT
*
94566696 GATTTGGGGAAATATTTAGG
1 GATTTGGGGAAATAGTTAGG
*
94566716 GATTAGGGGAAA-AGTTAGG
1 GATTTGGGGAAATAGTTAGG
94566735 GATTTGGGGAAAT
1 GATTTGGGGAAAT
94566748 TTGGGTGGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.33, C:0.00, G:0.38, T:0.29
Consensus pattern (20 bp):
GATTTGGGGAAATAGTTAGG
Found at i:94567865 original size:15 final size:15
Alignment explanation
Indices: 94567820--94567857 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
94567810 ATTTGTTTTA
94567820 AGGGTTTACAAATTT
1 AGGGTTTACAAATTT
94567835 AGGGTTTACAAATTT
1 AGGGTTTACAAATTT
94567850 AGGGTTTA
1 AGGGTTTA
94567858 TAATTTTACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (15 bp):
AGGGTTTACAAATTT
Found at i:94568074 original size:29 final size:30
Alignment explanation
Indices: 94568042--94568098 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
94568032 ATAGTTTAGA
* *
94568042 TCATGGG-TTATGATTTAGGGGTTAGGCGG
1 TCATGGGTTTATGATTTAAGGGCTAGGCGG
94568071 TCATGGGTTTATGATTTAAGGGCTAGGC
1 TCATGGGTTTATGATTTAAGGGCTAGGC
94568099 TTCATATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.19, C:0.09, G:0.37, T:0.35
Consensus pattern (30 bp):
TCATGGGTTTATGATTTAAGGGCTAGGCGG
Found at i:94568699 original size:41 final size:40
Alignment explanation
Indices: 94568631--94568766 Score: 128
Period size: 41 Copynumber: 3.4 Consensus size: 40
94568621 GCACTTTTAC
* * **
94568631 AAAACCGCCACTATAGCTCAACCTTTTGTGGCGTTTGGAA
1 AAAAACGCCACTATATCTCAATTTTTTGTGGCGTTTGGAA
** ** * *
94568671 CAAAAGTGCCACTATATCTCAATTTTTTGCAGCATTTTGAA
1 -AAAAACGCCACTATATCTCAATTTTTTGTGGCGTTTGGAA
* * * *
94568712 AAAAACGCCACTATTTCTCAGTTTTTAGTGGCGTTTTGGAT
1 AAAAACGCCACTATATCTCAATTTTTTGTGGCG-TTTGGAA
94568753 AAAAACGCCACTAT
1 AAAAACGCCACTAT
94568767 TGCTCAGTTT
Statistics
Matches: 75, Mismatches: 19, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
40 25 0.33
41 50 0.67
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (40 bp):
AAAAACGCCACTATATCTCAATTTTTTGTGGCGTTTGGAA
Found at i:94568731 original size:40 final size:41
Alignment explanation
Indices: 94568664--94568789 Score: 130
Period size: 40 Copynumber: 3.1 Consensus size: 41
94568654 TTTTGTGGCG
** * * *
94568664 TTTGGAACAAAAGTGCCACTATATCTCAATTTTTTGCAGCAT
1 TTTGGAA-AAAAACGCCACTATTTCTCAGTTTTTAGCAGCAT
** *
94568706 TTT-GAAAAAAACGCCACTATTTCTCAGTTTTTAGTGGCGT
1 TTTGGAAAAAAACGCCACTATTTCTCAGTTTTTAGCAGCAT
* * *
94568746 TTTGGATAAAAACGCCACTATTGCTCAGTTTTTAGC-GCGT
1 TTTGGAAAAAAACGCCACTATTTCTCAGTTTTTAGCAGCAT
94568786 TTTG
1 TTTG
94568790 TTTCAAACGC
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
40 37 0.51
41 32 0.44
42 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.37
Consensus pattern (41 bp):
TTTGGAAAAAAACGCCACTATTTCTCAGTTTTTAGCAGCAT
Found at i:94584732 original size:12 final size:12
Alignment explanation
Indices: 94584715--94584739 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
94584705 ACTTCTACGG
94584715 ATATTCACATCC
1 ATATTCACATCC
94584727 ATATTCACATCC
1 ATATTCACATCC
94584739 A
1 A
94584740 CTGTTTATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (12 bp):
ATATTCACATCC
Found at i:94584786 original size:22 final size:21
Alignment explanation
Indices: 94584752--94584796 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
94584742 GTTTATCTTT
* *
94584752 ATATTATATCTATAAATTCTAC
1 ATATCATACCTAT-AATTCTAC
*
94584774 ATATCATACCTATAGTTCTAC
1 ATATCATACCTATAATTCTAC
94584795 AT
1 AT
94584797 GCCTCACATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.38, C:0.18, G:0.02, T:0.42
Consensus pattern (21 bp):
ATATCATACCTATAATTCTAC
Found at i:94585155 original size:47 final size:49
Alignment explanation
Indices: 94585070--94585164 Score: 131
Period size: 47 Copynumber: 2.0 Consensus size: 49
94585060 CCTCTCTCAT
*
94585070 GCGTTTGGGAGCAGAGTAATCTTATTACCTTTCATAAGCCTCCCCCCAA
1 GCGTTTGGGAGCAGAGTAATCTTATTACCTTCCATAAGCCTCCCCCCAA
* * * *
94585119 GCGTTTGGGAG-A-AGTCATTTTATTATCTTCCTTAAGCCTCCCCCCA
1 GCGTTTGGGAGCAGAGTAATCTTATTACCTTCCATAAGCCTCCCCCCA
94585165 TGCATCTAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
47 29 0.71
48 1 0.02
49 11 0.27
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (49 bp):
GCGTTTGGGAGCAGAGTAATCTTATTACCTTCCATAAGCCTCCCCCCAA
Found at i:94585245 original size:49 final size:49
Alignment explanation
Indices: 94585048--94585292 Score: 146
Period size: 49 Copynumber: 5.1 Consensus size: 49
94585038 GCACCACCAT
* * * *
94585048 CTTTTCTGTAAGCCTCT-CTCATGCGTTTGGGAGCAGAGTAA-TCTTATTA
1 CTTTTC-GTAAGCCTCTCCCCATGCATCTGGAAGCAGAGTAACT-TTATTA
* * * * * * * * *
94585097 CCTTTCATAAGCCTCCCCCCAAGCGTTTGGGAG-A-AGTCATTTTATTA
1 CTTTTCGTAAGCCTCTCCCCATGCATCTGGAAGCAGAGTAACTTTATTA
* * * * * * ** * *
94585144 -TCTTCCTTAAGCCTCCCCCCATGCATCTAG-AGTAGGGCCATTTTATTT
1 CT-TTTCGTAAGCCTCTCCCCATGCATCTGGAAGCAGAGTAACTTTATTA
** *
94585192 CTTTTCGTAAGCCTC-CCCTCATGTGTCTTGG-AGCAGGGTAACTTTATTA
1 CTTTTCGTAAGCCTCTCCC-CATGCATC-TGGAAGCAGAGTAACTTTATTA
*
94585241 CTTTTCGTAAGCCTCTCCCCATGCATCTGGAAGCAGAGTCACTTTATTA
1 CTTTTCGTAAGCCTCTCCCCATGCATCTGGAAGCAGAGTAACTTTATTA
94585290 CTT
1 CTT
94585293 ATAGATTTTC
Statistics
Matches: 156, Mismatches: 30, Indels: 20
0.76 0.15 0.10
Matches are distributed among these distances:
46 2 0.01
47 36 0.23
48 40 0.26
49 75 0.48
50 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.36
Consensus pattern (49 bp):
CTTTTCGTAAGCCTCTCCCCATGCATCTGGAAGCAGAGTAACTTTATTA
Found at i:94588648 original size:6 final size:6
Alignment explanation
Indices: 94588639--94588667 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
94588629 TATTATTCAT
94588639 TTTTAA TTTTAA TTTTAA TTTTAA TTTTA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTA
94588668 TTCTTTTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTAA
Found at i:94591913 original size:22 final size:22
Alignment explanation
Indices: 94591888--94591929 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
94591878 TTAGTTAAAA
94591888 TAAC-ATTCTAATATTTTTATTT
1 TAACTATTCTAAT-TTTTTATTT
*
94591910 TAACTATTTTAATTTTTTAT
1 TAACTATTCTAATTTTTTAT
94591930 AATTACATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (22 bp):
TAACTATTCTAATTTTTTATTT
Found at i:94595089 original size:14 final size:14
Alignment explanation
Indices: 94595070--94595096 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
94595060 TTGGGATGTG
94595070 TTTTTCCTTTTCTT
1 TTTTTCCTTTTCTT
94595084 TTTTTCCTTTTCT
1 TTTTTCCTTTTCT
94595097 GGATTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTCCTTTTCTT
Found at i:94596455 original size:21 final size:20
Alignment explanation
Indices: 94596431--94596482 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
94596421 TTATGCCACA
**
94596431 TCAGTATTCTTATCTTGAATT
1 TCAGTATT-TTATCCAGAATT
*
94596452 TCAGGATTTTATCCAGAATT
1 TCAGTATTTTATCCAGAATT
*
94596472 TTAGTATTTTA
1 TCAGTATTTTA
94596483 ATTTGGATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.50
Consensus pattern (20 bp):
TCAGTATTTTATCCAGAATT
Found at i:94598569 original size:30 final size:32
Alignment explanation
Indices: 94598533--94598597 Score: 91
Period size: 30 Copynumber: 2.1 Consensus size: 32
94598523 ATAGACTATA
94598533 TTTTTATAATTTTTAAA-AAGTTAAA-T-TAAT
1 TTTTTAT-ATTTTTAAAGAAGTTAAAGTGTAAT
*
94598563 TTTTTATATTTTTAAAGGAGTTAAAGTGTAAT
1 TTTTTATATTTTTAAAGAAGTTAAAGTGTAAT
94598595 TTT
1 TTT
94598598 ACCTTTTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 9 0.29
30 14 0.45
31 1 0.03
32 7 0.23
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (32 bp):
TTTTTATATTTTTAAAGAAGTTAAAGTGTAAT
Found at i:94598598 original size:30 final size:29
Alignment explanation
Indices: 94598532--94598597 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
94598522 AATAGACTAT
94598532 ATTTTTATAATTTTTAAAAAGTTAAATTA
1 ATTTTTATAATTTTTAAAAAGTTAAATTA
*
94598561 ATTTTT-TATATTTTTAAAGGAGTTAAAGTGTA
1 ATTTTTATA-ATTTTTAAA-AAGTTAAA-T-TA
94598593 ATTTT
1 ATTTT
94598598 ACCTTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
28 2 0.06
29 15 0.47
30 7 0.22
31 1 0.03
32 7 0.22
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (29 bp):
ATTTTTATAATTTTTAAAAAGTTAAATTA
Found at i:94599934 original size:11 final size:11
Alignment explanation
Indices: 94599918--94599948 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
94599908 TTAGCATATT
94599918 AGTTCTAATCA
1 AGTTCTAATCA
94599929 AGTTCTAATCA
1 AGTTCTAATCA
*
94599940 AATTCTAAT
1 AGTTCTAAT
94599949 TAGCCCATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (11 bp):
AGTTCTAATCA
Found at i:94606918 original size:18 final size:18
Alignment explanation
Indices: 94606883--94606933 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
94606873 ATAATTTAAT
*
94606883 TTTAATTTTTATTA-CTTA
1 TTTAAATTTT-TTATCTTA
94606901 TTTAAATTTTTTATCTTA
1 TTTAAATTTTTTATCTTA
* *
94606919 CTAATAATTTTTTAT
1 TTTA-AATTTTTTAT
94606934 AATAATTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 3 0.11
18 15 0.54
19 10 0.36
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTAAATTTTTTATCTTA
Found at i:94609068 original size:89 final size:88
Alignment explanation
Indices: 94608874--94609183 Score: 305
Period size: 89 Copynumber: 3.6 Consensus size: 88
94608864 ACGTGAGCAA
* * * * * *
94608874 AGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTGAAAACA-GAATTTGCAAAACAGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTTGAAAAAAACATTTT
*
94608938 AAAAATACCTCGGCATGTGACCCG
66 AAAAATACCTCAG-ATGTGACCCG
*
94608962 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGCATAAATTT-AAAAAAACATTA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-CATAAATTTGAAAAAAACATT-
* * *
94609026 ATTGAAAATATCTCAG-TGTGCCCCG
64 -TTAAAAATACCTCAGATGTGACCCG
* * *
94609051 AGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTGAAAAACATAAA-TTGAACAGAA-A--T
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACATAAATTTGAAAAAAACATTT
* * * **
94609112 TGAAAATACCTCA-ACGTGTCTTG
65 TAAAAATACCTCAGATGTGACCCG
** * *
94609135 AGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTG-AAACAAAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATT
94609184 AACAATACCT
Statistics
Matches: 189, Mismatches: 25, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
82 8 0.04
83 1 0.01
84 52 0.28
88 42 0.22
89 65 0.34
90 9 0.05
91 12 0.06
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.30
Consensus pattern (88 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTTGAAAAAAACATTTT
AAAAATACCTCAGATGTGACCCG
Found at i:94609224 original size:71 final size:71
Alignment explanation
Indices: 94609103--94609242 Score: 201
Period size: 71 Copynumber: 2.0 Consensus size: 71
94609093 ACATAAATTG
* ** **
94609103 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAG
1 AACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAG
94609168 TTTTGA
66 TTTTGA
*
94609174 AACAAAAATT-AACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAAAAATTGAA-AATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
94609238 TTTTT
65 GTTTT
94609243 TTGAAAAGCA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
70 2 0.03
71 59 0.97
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (71 bp):
AACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAG
TTTTGA
Found at i:94609369 original size:90 final size:89
Alignment explanation
Indices: 94609206--94609423 Score: 294
Period size: 90 Copynumber: 2.4 Consensus size: 89
94609196 GCGTGTCCCG
* **
94609206 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATTAAAAAACATTAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACATAAATTAAAAAACAGAAA
94609271 TTGAAAATACCTC-AGCATGTGATCCTA
64 TTGAAAATACCTCGA-CATGTGA-CCTA
* * * * *
94609298 AGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAAACATAAATTGAAAAACGGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTAAAAAACAGAAATT
* *
94609363 GTAAATACCTCGACATGTGACCTG
66 GAAAATACCTCGACATGTGACCTA
*
94609387 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
94609424 TTGATGAACA
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
89 36 0.32
90 45 0.41
91 1 0.01
92 29 0.26
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (89 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTAAAAAACAGAAATT
GAAAATACCTCGACATGTGACCTA
Found at i:94609424 original size:90 final size:91
Alignment explanation
Indices: 94609173--94609443 Score: 313
Period size: 89 Copynumber: 3.0 Consensus size: 91
94609163 TTGAGTTTTG
* *
94609173 AAACAAAAATT-AACAATACCTCAGC--GTG-TCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAACAGAAATTGAA-AATACCTCAGCATGTGATCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
94609234 TTGATTTTTTTGAAAAGCATAAATTAAA
65 TTGA-TTTTTTGAAAAACATAAATTAAA
** * * * *
94609262 AAACATTAATTGAAAATACCTCAGCATGTGATCCTAAGGCTCAATTCACCTCTAGCAATATGAAT
1 AAACAGAAATTGAAAATACCTCAGCATGTGATCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
94609327 TGA-TTTTTGAAAAACATAAATTGAA
66 TGATTTTTTGAAAAACATAAATTAAA
* * *
94609352 AAACGGAAATTGTAAATACCTC-GACATGTGA-CCTGAGGTTCAACTCACCTCTCGCAATATGAG
1 AAACAGAAATTGAAAATACCTCAG-CATGTGATCCTGAGGCTCAACTCACCTCTCGCAATATGAG
** *
94609415 TTGATTTTTTTGATGAACAGAAATTAAA
65 TTGA-TTTTTTGAAAAACATAAATTAAA
94609443 A
1 A
94609444 CTACCTCTGC
Statistics
Matches: 153, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
89 52 0.34
90 47 0.31
91 22 0.14
92 32 0.21
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.29
Consensus pattern (91 bp):
AAACAGAAATTGAAAATACCTCAGCATGTGATCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACATAAATTAAA
Found at i:94609544 original size:74 final size:73
Alignment explanation
Indices: 94609359--94610037 Score: 549
Period size: 74 Copynumber: 8.9 Consensus size: 73
94609349 GAAAAACGGA
* * * *
94609359 AATTGTAAATACCTCGACATGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTC-A-ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
94609424 TTGATGAACAGA-
64 TTGA--AA-AAAT
** *
94609436 AATT-AAAACTACCTCTGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AATTGAAAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
94609500 TGAAAAAAT
65 TGAAAAAAT
*
94609509 AGATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 A-ATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
94609574 TGAAAAAAT
65 TGAAAAAAT
* *
94609583 AGATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--GTTT
1 A-ATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
94609646 TGAAACAAA-
65 TGAAA-AAAT
* * *
94609655 AATT-AACAATACCTCAGCGTGTCCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AATTGAA-AATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
94609719 TAAAAAACATT
65 TGAAAAA-A-T
* * * ** *
94609730 AATTGAAAATACCTCGGCATGTGATCCTGAGGCTCAATTCACCTCTAACAATATGAATTGA--TT
1 AATTGAAAATACCTC--AACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
94609793 TTTGAAAAACAT
63 TTTGAAAAA-AT
*** * * * ** * * *
94609805 AAATTGAAAA-ACGGAAATTGTAAATACCTCGACATGTGACCTGAGGTTCAACTCAC-C--TCTC
1 -AATTGAAAATACCTCAA-CGT--GT-CCT-G--A-G-G--CTCA-ACTCACCTCTCGCAATAT-
* * *
94609866 GCAATAGAGTTGATTTTTTGATGAACAAA-
52 G-AGTTGA-TT-TTTTT--GA--AA-AAAT
* *
94609895 AATT-AAAACTACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AATTGAAAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
94609959 TGAAAAAAT
65 TGAAAAAAT
* *
94609968 AGATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 A-ATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
94610033 TGAAA
65 TGAAA
94610038 CAGAAATAAA
Statistics
Matches: 495, Mismatches: 60, Indels: 97
0.76 0.09 0.15
Matches are distributed among these distances:
70 2 0.00
71 50 0.10
72 16 0.03
73 18 0.04
74 184 0.37
75 74 0.15
76 29 0.06
77 18 0.04
78 40 0.08
79 8 0.02
80 2 0.00
81 6 0.01
82 2 0.00
83 10 0.02
84 7 0.01
85 1 0.00
86 3 0.01
87 5 0.01
88 4 0.01
89 8 0.02
90 3 0.01
91 3 0.01
92 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (73 bp):
AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
GAAAAAAT
Found at i:94609898 original size:89 final size:89
Alignment explanation
Indices: 94609730--94609902 Score: 224
Period size: 89 Copynumber: 1.9 Consensus size: 89
94609720 AAAAAACATT
* *
94609730 AATTGAAAATACCTCGGCATGTGATCCTGAGGCTCAATTCACCTCTAACAATATGAATTGATTTT
1 AATTGAAAATACCTCGACATGTGATCCTGAGGCTCAACTCACCTCTAACAATATGAATTGATTTT
*
94609795 TGAAAAACATAAATTGAAAAACGGA
66 TGAAAAACAAAAATT-AAAAACGGA
* * ** *
94609820 AATTGTAAATACCTCGACATGTGA-CCTGAGGTTCAACTCACCTCTCGCAATA-GAGTTGATTTT
1 AATTGAAAATACCTCGACATGTGATCCTGAGGCTCAACTCACCTCTAACAATATGAATTGA-TTT
**
94609883 TTGATGAACAAAAATTAAAA
65 TTGAAAAACAAAAATTAAAA
94609903 CTACCTCAGC
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
88 10 0.14
89 40 0.56
90 22 0.31
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (89 bp):
AATTGAAAATACCTCGACATGTGATCCTGAGGCTCAACTCACCTCTAACAATATGAATTGATTTT
TGAAAAACAAAAATTAAAAACGGA
Found at i:94621978 original size:2 final size:2
Alignment explanation
Indices: 94621971--94622001 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
94621961 TGTACGTAAA
*
94621971 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
94622002 AATAGTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:94622060 original size:25 final size:23
Alignment explanation
Indices: 94622008--94622062 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
94621998 TATAAATAGT
94622008 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
94622031 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
94622056 AATAGTG
1 AATAGTG
94622063 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:94622278 original size:22 final size:21
Alignment explanation
Indices: 94622237--94622286 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
94622227 TATGAAAATA
94622237 ATACTATATATAAAGTATATAT
1 ATACTATATATAAAG-ATATAT
94622259 ATACTCATATAATAAA-ATATAT
1 ATACT-ATAT-ATAAAGATATAT
*
94622281 GTACTA
1 ATACTA
94622287 GTATTAACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.04
22 15 0.60
23 4 0.16
24 5 0.20
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (21 bp):
ATACTATATATAAAGATATAT
Found at i:94622594 original size:19 final size:19
Alignment explanation
Indices: 94622570--94622606 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
94622560 TATAAATAAT
*
94622570 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
94622589 AATGATATTAGAAATATA
1 AATGATATTAGAAATATA
94622607 TATAAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:94622703 original size:24 final size:24
Alignment explanation
Indices: 94622662--94622723 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 24
94622652 ACACAATAAT
*
94622662 ATATATAACATACAATAT-TGAAAA
1 ATATAT-ACATACAATATACGAAAA
94622686 CATATATACATA-ATATATACGAAAA
1 -ATATATACATACA-ATATACGAAAA
*
94622711 ATATATATATACA
1 ATATATACATACA
94622724 TAATATAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
23 1 0.03
24 19 0.59
25 12 0.38
ACGTcount: A:0.56, C:0.10, G:0.03, T:0.31
Consensus pattern (24 bp):
ATATATACATACAATATACGAAAA
Found at i:94622816 original size:23 final size:24
Alignment explanation
Indices: 94622789--94622835 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
94622779 ATAATAATGC
94622789 TACATAAATATAT-TAAAAATATA
1 TACATAAATATATATAAAAATATA
*
94622812 TACATATATATATATAAAAATATA
1 TACATAAATATATATAAAAATATA
94622836 AAAAATATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (24 bp):
TACATAAATATATATAAAAATATA
Found at i:94622844 original size:9 final size:10
Alignment explanation
Indices: 94622794--94622844 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 10
94622784 AATGCTACAT
94622794 AAATATATTAA
1 AAATATA-TAA
94622805 AAATATATACA
1 AAATATATA-A
94622816 TATATATATATAA
1 -A-A-ATATATAA
94622829 AAATATA-AA
1 AAATATATAA
94622838 AAATATA
1 AAATATA
94622845 CACTAATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
9 9 0.25
10 7 0.19
11 9 0.25
12 2 0.06
13 2 0.06
14 7 0.19
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (10 bp):
AAATATATAA
Found at i:94622854 original size:31 final size:33
Alignment explanation
Indices: 94622792--94622856 Score: 91
Period size: 31 Copynumber: 2.0 Consensus size: 33
94622782 ATAATGCTAC
*
94622792 ATAAATATATTAAAAATATATACATATATATAT
1 ATAAAAATATTAAAAATATATACATATATATAT
94622825 ATAAAAATA-TAAAAA-ATATACACTA-ATATAT
1 ATAAAAATATTAAAAATATATACA-TATATATAT
94622856 A
1 A
94622857 GTAATCATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 14 0.47
32 8 0.27
33 8 0.27
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.34
Consensus pattern (33 bp):
ATAAAAATATTAAAAATATATACATATATATAT
Found at i:94628886 original size:40 final size:40
Alignment explanation
Indices: 94628842--94628951 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
94628832 TTCACAATTT
* *
94628842 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
94628882 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
94628922 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
94628952 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:94632652 original size:27 final size:27
Alignment explanation
Indices: 94632576--94632685 Score: 134
Period size: 27 Copynumber: 4.1 Consensus size: 27
94632566 CATGGCTGCT
* * *
94632576 AGAATAGATAA-TGTGACAGAGTCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
*
94632602 AGATATAGATAATTGTGGCAGAGCCACC
1 AGA-ACAGATAATTGTGGCAGAGCCACC
94632630 AGAACAGA-AATATGTGGCAGAGCCACC
1 AGAACAGATAAT-TGTGGCAGAGCCACC
* *
94632657 AGATCAGATAATTGTGGCATAGCCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
94632684 AG
1 AG
94632686 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
26 6 0.08
27 50 0.67
28 19 0.25
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.18
Consensus pattern (27 bp):
AGAACAGATAATTGTGGCAGAGCCACC
Found at i:94635092 original size:47 final size:47
Alignment explanation
Indices: 94635029--94635276 Score: 397
Period size: 47 Copynumber: 5.3 Consensus size: 47
94635019 CCCTTCGGGA
* * *
94635029 CTTATCATATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
94635076 CTTATCACATATATACACCTTCACATCCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
94635123 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
94635170 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
94635217 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
94635264 CTTATCACATATA
1 CTTATCACATATA
94635277 CATATCTTGT
Statistics
Matches: 184, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 184 1.00
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:94637616 original size:5 final size:5
Alignment explanation
Indices: 94637606--94637637 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
94637596 TTGTGTGTTC
94637606 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
94637638 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:94637620 original size:9 final size:9
Alignment explanation
Indices: 94637606--94637636 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
94637596 TTGTGTGTTC
94637606 TTTATTTTA
1 TTTATTTTA
94637615 TTTATTTTA
1 TTTATTTTA
94637624 TTTTATTTTA
1 -TTTATTTTA
94637634 TTT
1 TTT
94637637 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:94642066 original size:5 final size:5
Alignment explanation
Indices: 94642056--94642087 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
94642046 TTGTGTGTTC
94642056 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
94642088 TCACAACATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:94642070 original size:9 final size:9
Alignment explanation
Indices: 94642056--94642086 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
94642046 TTGTGTGTTC
94642056 TTTATTTTA
1 TTTATTTTA
94642065 TTTATTTTA
1 TTTATTTTA
94642074 TTTTATTTTA
1 -TTTATTTTA
94642084 TTT
1 TTT
94642087 TTCACAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:94643153 original size:24 final size:24
Alignment explanation
Indices: 94643138--94643196 Score: 118
Period size: 24 Copynumber: 2.5 Consensus size: 24
94643128 CCTTATCTGT
94643138 TCCTAAATCCTATCCCTTATCAAC
1 TCCTAAATCCTATCCCTTATCAAC
94643162 TCCTAAATCCTATCCCTTATCAAC
1 TCCTAAATCCTATCCCTTATCAAC
94643186 TCCTAAATCCT
1 TCCTAAATCCT
94643197 CTCCTGACAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.29, C:0.37, G:0.00, T:0.34
Consensus pattern (24 bp):
TCCTAAATCCTATCCCTTATCAAC
Found at i:94646065 original size:40 final size:40
Alignment explanation
Indices: 94646020--94646186 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
94646010 CGGAATATAA
94646020 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** * *
94646060 CCGGATA-AATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
94646099 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
94646139 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
94646179 CCGGATAT
1 CCGGATAT
94646187 CATTCAATTT
Statistics
Matches: 103, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.32
40 68 0.66
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:94656799 original size:40 final size:40
Alignment explanation
Indices: 94656754--94656920 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
94656744 CGGAATATAA
94656754 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** * *
94656794 CCGGATA-AATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
94656833 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
94656873 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
94656913 CCGGATAT
1 CCGGATAT
94656921 CATTCAATTT
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.33
40 66 0.65
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:94663854 original size:19 final size:19
Alignment explanation
Indices: 94663830--94663869 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
94663820 CAAGGGTATC
94663830 GAGGGCTAGAAATGAGTAG
1 GAGGGCTAGAAATGAGTAG
94663849 GAGGGCTAGAAATGAGTAG
1 GAGGGCTAGAAATGAGTAG
94663868 GA
1 GA
94663870 CCTACAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.42, T:0.15
Consensus pattern (19 bp):
GAGGGCTAGAAATGAGTAG
Found at i:94671242 original size:40 final size:40
Alignment explanation
Indices: 94671189--94671371 Score: 316
Period size: 40 Copynumber: 4.6 Consensus size: 40
94671179 ACTACTTGCT
*
94671189 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
94671229 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
94671269 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
94671309 CAAATGCCTTCGGGAC-TAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
94671348 CAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
94671372 ATTATCATCC
Statistics
Matches: 138, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
38 1 0.01
39 35 0.25
40 102 0.74
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:94679278 original size:40 final size:40
Alignment explanation
Indices: 94679225--94679373 Score: 228
Period size: 40 Copynumber: 3.7 Consensus size: 40
94679215 ACTACTTGCT
94679225 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
**
94679265 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
94679305 CAAATGCCTTCGGTACTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
94679345 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
94679374 CATCCGAATA
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 96 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:94679325 original size:80 final size:80
Alignment explanation
Indices: 94679193--94679368 Score: 241
Period size: 80 Copynumber: 2.2 Consensus size: 80
94679183 ACCCAAGCAT
* * * *
94679193 CTTCGGGATTTAG-CCGAATATAACTACTTGCTCAAATGCCTTCGGGACTTAGCCCGG-TTATAG
1 CTTCGGGACTTAGCCCGAATATAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
*
94679256 TAACTCGCACAAATGC
65 TAACTAGCACAAATGC
* *
94679272 CTTCGGGACTTAGCCCGAATAT-AGTAACTCGCACAAATGCCTTCGGTACTTAGCCCGGAATTAG
1 CTTCGGGACTTAGCCCGAATATAACT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
94679336 TCACTAGCACAAATGC
65 TAACTAGCACAAATGC
94679352 CTTCGGGACTTAGCCCG
1 CTTCGGGACTTAGCCCG
94679369 GTTATCATCC
Statistics
Matches: 86, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
79 14 0.16
80 71 0.83
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGAATATAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
AACTAGCACAAATGC
Found at i:94682043 original size:40 final size:39
Alignment explanation
Indices: 94681960--94682151 Score: 154
Period size: 40 Copynumber: 4.8 Consensus size: 39
94681950 TCGAATGATG
* * * * *
94681960 TCCGGGCTAAGTCCCGAAGGCCTT-GTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
94682000 TCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
94682040 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
94682079 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
94682120 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
94682152 CGTTATATCC
Statistics
Matches: 125, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 33 0.26
40 85 0.68
41 7 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:94682099 original size:79 final size:82
Alignment explanation
Indices: 94681960--94682144 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
94681950 TCGAATGATG
* * * *
94681960 TCCGGGCTAAGTCCCGAAGGC-CTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
94682024 CGTGCGAGTTAATA-AA
66 CGTGCGAGTTAATATAA
* **
94682040 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
94682102 TCGTGCGAGTTACTATAA
65 TCGTGCGAGTTAATATAA
**
94682120 -CCGGGCTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
94682145 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTAATATAA
Found at i:94685134 original size:40 final size:40
Alignment explanation
Indices: 94685026--94685265 Score: 276
Period size: 40 Copynumber: 6.0 Consensus size: 40
94685016 ATGATAACCA
* **
94685026 GGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTCGTGAGAGTT-ACTATA-TCCG
* **
94685066 GGCTAAG-CCCGAAGGCAATT-GTGCGAGTTTTTATATCCG
1 GGCTAAGTCCCGAAGGC-ATTCGTGAGAGTTACTATATCCG
94685105 GGCTAAGTCCCGAAGGCATTCGTGAGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTCGTGAGAGTTACTATATCCG
*
94685145 GGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTCGTGAGAGTTACTATATCCG
*
94685185 GGCTAAGTCCCGAAGGCATTTGTGCA-AGTTACTATAAT-CG
1 GGCTAAGTCCCGAAGGCATTCGTG-AGAGTTACTAT-ATCCG
* * * **
94685225 GGCTATGTCCCGAAGGCATTCGAGCGAGTCGCTATATCCG
1 GGCTAAGTCCCGAAGGCATTCGTGAGAGTTACTATATCCG
94685265 G
1 G
94685266 TTAAATTCCG
Statistics
Matches: 176, Mismatches: 15, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
39 32 0.18
40 142 0.81
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTCGTGAGAGTTACTATATCCG
Found at i:94685188 original size:80 final size:79
Alignment explanation
Indices: 94685026--94685265 Score: 310
Period size: 80 Copynumber: 3.0 Consensus size: 79
94685016 ATGATAACCA
*
94685026 GGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACTA-ATTCCGGGCTAAG-CCCGAAGGCAATT-G
1 GGCTAAGTCCCGAAGGCATTTGTG-AAGTT-ACTATA-TCCGGGCTAAGTCCCGAAGGC-ATTCG
**
94685087 TGCGAGTTTTTATATCCG
62 TGCGAGTTACTATATCCG
*
94685105 GGCTAAGTCCCGAAGGCATTCGTGAGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGA-AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
94685170 GAGTTACTATATCCG
65 GAGTTACTATATCCG
* *
94685185 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTCGAG
1 GGCTAAGTCCCGAAGGCATTTGTG-AAGTTACTAT-ATCCGGGCTAAGTCCCGAAGGCATTCGTG
**
94685249 CGAGTCGCTATATCCG
64 CGAGTTACTATATCCG
94685265 G
1 G
94685266 TTAAATTCCG
Statistics
Matches: 145, Mismatches: 9, Indels: 13
0.87 0.05 0.08
Matches are distributed among these distances:
79 42 0.29
80 100 0.69
81 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGTGAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCG
AGTTACTATATCCG
Found at i:94685238 original size:120 final size:119
Alignment explanation
Indices: 94685026--94685265 Score: 324
Period size: 120 Copynumber: 2.0 Consensus size: 119
94685016 ATGATAACCA
* * *
94685026 GGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGTGCG
1 GGCTAAGTCCCGAAGGCATTCGTGCGATTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGTGCA
** * *
94685091 AGTTTTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGAGAGTTACTATATCCG
66 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGAGAGAGTCACTATATCCG
*
94685145 GGCTAAGTCCCGAAGGCATTCGTGCGAGTT-ACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTCGTGCGA-TTGACTAAT-TCCGGGCTAAG-CCCGAAGGCAATTGT
* * *
94685208 GCAAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTCGAGCGAGTCGCTATATCCG
63 GCAAGTTACTAT-ATCCGGGCTAAGTCCCGAAGGCATTCGAGAGAGTCACTATATCCG
94685265 G
1 G
94685266 TTAAATTCCG
Statistics
Matches: 106, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
118 2 0.02
119 39 0.37
120 63 0.59
121 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (119 bp):
GGCTAAGTCCCGAAGGCATTCGTGCGATTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGTGCA
AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGAGAGAGTCACTATATCCG
Found at i:94689509 original size:14 final size:15
Alignment explanation
Indices: 94689492--94689520 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
94689482 GCACGAAAAT
94689492 TTCACACAT-ATAAA
1 TTCACACATAATAAA
94689506 TTCACACATAATAAA
1 TTCACACATAATAAA
94689521 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:94694769 original size:68 final size:67
Alignment explanation
Indices: 94694697--94694854 Score: 167
Period size: 68 Copynumber: 2.3 Consensus size: 67
94694687 CATCATGTGT
** * * *
94694697 ACAAGAGAGCTACGAGATACTATGTAGTAGCTAGGTCACATGTGTGAT-ACGGGATGTATC-CCA
1 ACAAGAGAGCTACGAGATA-TA-AAAGTAGCTAGGTCACATGTGTGATCAAGGGAAGGA-CACCA
94694760 TGTAG
63 TGTAG
* * *
94694765 ACAAGAGAGCTACGGGAGAGATAAAAGTAGCTAGGTCGCATGTGTGATCCCAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGATATAAAAGTAGCTAGGTCACATGTGTGAT--CAAGGGAAGGACACC
94694830 ATGTAG
62 ATGTAG
94694836 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGAGATA
94694855 AATTGGTAAG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
68 35 0.47
69 7 0.09
70 6 0.08
71 27 0.36
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGATATAAAAGTAGCTAGGTCACATGTGTGATCAAGGGAAGGACACCATGT
AG
Found at i:94697045 original size:26 final size:26
Alignment explanation
Indices: 94697016--94697065 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
94697006 ACCAATATCA
*
94697016 GTATCGCAGCAAAGATACTAGTAACG
1 GTATCGCAGCAAAGATACCAGTAACG
*
94697042 GTATCGCAGCAAAGCTACCAGTAA
1 GTATCGCAGCAAAGATACCAGTAA
94697066 TCAATATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
GTATCGCAGCAAAGATACCAGTAACG
Found at i:94699015 original size:29 final size:28
Alignment explanation
Indices: 94698981--94699083 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
94698971 TACTCAATCA
*
94698981 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
94699010 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
94699039 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
94699068 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
94699084 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:94703537 original size:46 final size:46
Alignment explanation
Indices: 94703470--94703635 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 46
94703460 CCCATAAGCA
94703470 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTG
1 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTG
* *
94703516 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-CTC---TCG
1 AACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATCCACAAGT-G
* * * * *
94703563 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTG
*
94703609 AACTCGGACTCAACTCAACGAGTTCGG
1 AACTCGGACTCAACTCAACGAGCTCGG
94703636 ATGCCCGAAT
Statistics
Matches: 99, Mismatches: 10, Indels: 22
0.76 0.08 0.17
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
46 55 0.56
47 27 0.27
48 1 0.01
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.20
Consensus pattern (46 bp):
AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTG
Found at i:94703597 original size:93 final size:93
Alignment explanation
Indices: 94703470--94703640 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
94703460 CCCATAAGCA
* * *
94703470 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAAC
94703535 GAGCTCGGATGCCTAGTTACATCTCTCG
66 GAGCTCGGATGCCTAGTTACATCTCTCG
* *
94703563 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAAC
*
94703628 GAGTTCGGATGCC
66 GAGCTCGGATGCC
94703641 CGAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCG
Found at i:94703655 original size:46 final size:45
Alignment explanation
Indices: 94703470--94703655 Score: 128
Period size: 46 Copynumber: 4.0 Consensus size: 45
94703460 CCCATAAGCA
* ** ** *
94703470 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCG-CATCCACAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCCGACAT-C-CTAGTG
* * *
94703516 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT--CG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCC-CG--ACATC-CTAGTG
* ****
94703563 AACTCGGACTCAACTCAACGAGTTCAGACATTCG-CATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCCGACATCC-T-AGTG
*
94703609 AACTCGGACTCAACTCAACGAGTTCGGATGCCCGAATATCCTAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCCG-ACATCCTAGTG
94703655 A
1 A
94703656 CATGTCACTT
Statistics
Matches: 108, Mismatches: 22, Indels: 20
0.72 0.15 0.13
Matches are distributed among these distances:
42 1 0.01
43 5 0.05
46 64 0.59
47 29 0.27
48 4 0.04
49 2 0.02
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCCGACATCCTAGTG
Found at i:94709242 original size:27 final size:27
Alignment explanation
Indices: 94709207--94709318 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
94709197 AGCATGGCTG
* *
94709207 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
94709233 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
* *
94709261 CCAGA-ACAGAAATATGTGGCAAAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
94709288 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
94709315 CCAG
1 CCAG
94709319 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
26 5 0.07
27 52 0.71
28 16 0.22
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:94709298 original size:54 final size:54
Alignment explanation
Indices: 94709207--94709318 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
94709197 AGCATGGCTG
* * * *
94709207 CCAGAACAGATAATGTGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAAAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
94709261 CCAGAACAGAAATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAAAGCCACCAGATACAGATAATCGTGGCAGAGCCA
94709315 CCAG
1 CCAG
94709319 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 34 0.68
55 16 0.32
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAAAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:94712924 original size:18 final size:19
Alignment explanation
Indices: 94712903--94712938 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
94712893 AATAAAGAAA
*
94712903 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
94712921 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
94712939 AAAAAGGGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:94714216 original size:42 final size:42
Alignment explanation
Indices: 94714157--94714294 Score: 154
Period size: 42 Copynumber: 3.5 Consensus size: 42
94714147 TATTGGTCTC
94714157 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* **
94714199 GGCACTAAGTGTGCGGGTTTAAA---A-ATTGT-AC------
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
94714230 GGCACTAAGTGTGCGTGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
94714272 GGCACTAAGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
94714295 AATTGTACAG
Statistics
Matches: 76, Mismatches: 9, Indels: 22
0.71 0.08 0.21
Matches are distributed among these distances:
31 21 0.28
34 1 0.01
35 3 0.04
36 2 0.03
37 2 0.03
38 3 0.04
39 1 0.01
42 43 0.57
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.25
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:94714275 original size:73 final size:73
Alignment explanation
Indices: 94714156--94714317 Score: 306
Period size: 73 Copynumber: 2.2 Consensus size: 73
94714146 GTATTGGTCT
94714156 CGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATTGGCACTAAGTGTGCGGGTTTAA
1 CGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATTGGCACTAAGTGTGCGGGTTTAA
94714221 AAATTGTA
66 AAATTGTA
*
94714229 CGGCACTAAGTGTGCGTGTATAAATGGACACGGTGACAAGATTGGCACTAAGTGTGCGGGTTTAA
1 CGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATTGGCACTAAGTGTGCGGGTTTAA
94714294 AAATTGTA
66 AAATTGTA
*
94714302 CAGCACTAAGTGTGCG
1 CGGCACTAAGTGTGCG
94714318 AACTGAAAAT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 87 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.25
Consensus pattern (73 bp):
CGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATTGGCACTAAGTGTGCGGGTTTAA
AAATTGTA
Found at i:94714399 original size:59 final size:58
Alignment explanation
Indices: 94714303--94714434 Score: 246
Period size: 59 Copynumber: 2.3 Consensus size: 58
94714293 AAAATTGTAC
94714303 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
94714361 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
94714420 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
94714435 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 23 0.32
59 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:94714423 original size:88 final size:89
Alignment explanation
Indices: 94714273--94714434 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
94714263 GACAAGATTG
* * *
94714273 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
94714338 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * *
94714362 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
94714426 AAGTGTGCG
66 AAGTGTGCG
94714435 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:94714446 original size:29 final size:29
Alignment explanation
Indices: 94714303--94714434 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
94714293 AAAATTGTAC
*
94714303 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
94714332 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
94714361 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
94714391 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
94714420 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
94714435 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:94720676 original size:18 final size:19
Alignment explanation
Indices: 94720655--94720690 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
94720645 AATAAAGAAA
*
94720655 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
94720673 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
94720691 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:94722052 original size:56 final size:57
Alignment explanation
Indices: 94721985--94722113 Score: 217
Period size: 56 Copynumber: 2.3 Consensus size: 57
94721975 AAAATTGTAC
94721985 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGT-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATTATAT-GCACTAAGTGTCGAGCTGAAAATATAT
*
94722041 AGCACTAAGTGTGCGAGCTGAAAATTATATGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATTATATGCACTAAGTGT-CGAGCTGAAAATATAT
94722099 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
94722114 GATTCACTAT
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
56 34 0.49
57 5 0.07
58 30 0.43
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (57 bp):
AGCACTAAGTGTGCGAACTGAAAATTATATGCACTAAGTGTCGAGCTGAAAATATAT
Done.