Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 311 of 770
Found at i:95014705 original size:43 final size:43
Alignment explanation
Indices: 95014636--95014868 Score: 222
Period size: 43 Copynumber: 5.4 Consensus size: 43
95014626 TAATTTTTTA
* * *
95014636 AAAGGTCATG-ATTTTAGTGGCGTTTGTGGGAAAAGCGCCGCT
1 AAAGGTCATGTTTTTTAGCGGCATTTGTGGGAAAAGCGCCGCT
* * *
95014678 AAAGGTCATGTTTTTTAGCAGCATTTGTGGGAAAAGTGTCGCT
1 AAAGGTCATGTTTTTTAGCGGCATTTGTGGGAAAAGCGCCGCT
* ** * *
95014721 AAAGTTGGTGTTTTTTTAGCGGCATTTGTGGGAAAAGTGCCGTT
1 AAAGGTCATG-TTTTTTAGCGGCATTTGTGGGAAAAGCGCCGCT
* * * *
95014765 AAAGGTCGTGTTTTTTAACGGCGTTTTTGGG-AAAGCGCCGCT
1 AAAGGTCATGTTTTTTAGCGGCATTTGTGGGAAAAGCGCCGCT
* * *
95014807 AAAAGG-CATGATCTTTAGCGGCAGTTT-TGGTAAAAGCGCCGCT
1 -AAAGGTCATGTTTTTTAGCGGCA-TTTGTGGGAAAAGCGCCGCT
* **
95014850 AAAGATCATGACTTTTAGC
1 AAAGGTCATGTTTTTTAGC
95014869 AACGTTTTTT
Statistics
Matches: 157, Mismatches: 28, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
42 38 0.24
43 81 0.52
44 38 0.24
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.32
Consensus pattern (43 bp):
AAAGGTCATGTTTTTTAGCGGCATTTGTGGGAAAAGCGCCGCT
Found at i:95017755 original size:24 final size:24
Alignment explanation
Indices: 95017719--95017770 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
95017709 CATGTACTCA
95017719 ATTTGACACATCTCCAATTAGTTT
1 ATTTGACACATCTCCAATTAGTTT
* *
95017743 ATTTTACATATCTCCAATTAGTTT
1 ATTTGACACATCTCCAATTAGTTT
95017767 ATTT
1 ATTT
95017771 CTCCTTACTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.48
Consensus pattern (24 bp):
ATTTGACACATCTCCAATTAGTTT
Found at i:95018362 original size:22 final size:21
Alignment explanation
Indices: 95018335--95018394 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
95018325 TATCACAATT
*
95018335 ATTTTTAATTATTTTTAAGTAA
1 ATTTTTAATTATTTTTAA-AAA
*
95018357 ATTTTTAA-TATTAATTAAAAA
1 ATTTTTAATTATT-TTTAAAAA
95018378 ATTCTTTAATT-TTTTTA
1 ATT-TTTAATTATTTTTA
95018395 TTTGACTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 12 0.38
22 19 0.59
23 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTTTTAATTATTTTTAAAAA
Found at i:95024141 original size:26 final size:26
Alignment explanation
Indices: 95024105--95024240 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
95024095 CATGAAATTC
95024105 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
95024131 TTATCATGAAACATTTACCTAACCAA
1 TTATCATGAAACATTTACCTAACCCA
* *
95024157 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
95024183 TTATCATGAAACATTTACCTAACACA
1 TTATCATGAAACATTTACCTAACCCA
*
95024209 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
95024235 TTATCA
1 TTATCA
95024241 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:95025652 original size:19 final size:19
Alignment explanation
Indices: 95025628--95025725 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
95025618 AATCTTTAAG
95025628 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95025647 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95025666 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95025683 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
95025702 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
95025723 GAT
1 GAT
95025726 CTTGTAATCT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
21 9 0.12
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:95025658 original size:36 final size:35
Alignment explanation
Indices: 95025618--95025725 Score: 112
Period size: 36 Copynumber: 2.9 Consensus size: 35
95025608 ATGGAAATAT
95025618 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
95025654 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
95025690 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
95025726 CTTGTAATCT
Statistics
Matches: 61, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 28 0.46
37 1 0.02
38 7 0.11
40 10 0.16
41 6 0.10
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:95028310 original size:26 final size:26
Alignment explanation
Indices: 95028281--95028390 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
95028271 TGATACAAAT
95028281 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
95028307 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
95028333 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
95028359 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95028385 TGATAA
1 TGATAA
95028391 GAAATTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:95030409 original size:136 final size:136
Alignment explanation
Indices: 95030165--95030449 Score: 543
Period size: 136 Copynumber: 2.1 Consensus size: 136
95030155 GAGTAGTCTC
*
95030165 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
95030230 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
95030295 CTGTTA
131 CTGTTA
95030301 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
95030366 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
95030431 CTGTTA
131 CTGTTA
**
95030437 CCTGAATGGGCTT
1 CCCAAATGGGCTT
95030450 AGGCCCAATA
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 146 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:95034233 original size:26 final size:26
Alignment explanation
Indices: 95034196--95034331 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
95034186 TGATACAAAT
*
95034196 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95034222 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
95034248 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
95034274 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
95034300 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95034326 TGATAA
1 TGATAA
95034332 GAATTCATGT
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 106 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:95036348 original size:134 final size:137
Alignment explanation
Indices: 95036107--95036390 Score: 520
Period size: 134 Copynumber: 2.1 Consensus size: 137
95036097 GAGTAGTCTC
95036107 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
95036172 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCT-TGGCCCAGTA-C
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
95036235 ACTGTTA
131 ACTGTTA
*
95036242 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
95036306 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
95036371 ACTGTTA
131 ACTGTTA
**
95036378 CCTGAATGGGCTT
1 CCCAAATGGGCTT
95036391 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
134 95 0.66
135 30 0.21
136 19 0.13
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:95040424 original size:16 final size:18
Alignment explanation
Indices: 95040405--95040443 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
95040395 AAAGAAAAAG
*
95040405 AAAAACCT-A-CCCTAAA
1 AAAAACCTAACCCCCAAA
95040421 AAAAACCTAACCCCCAAA
1 AAAAACCTAACCCCCAAA
95040439 AAAAA
1 AAAAA
95040444 AAGAAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 8 0.40
17 1 0.05
18 11 0.55
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (18 bp):
AAAAACCTAACCCCCAAA
Found at i:95040471 original size:28 final size:26
Alignment explanation
Indices: 95040438--95040490 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 26
95040428 TAACCCCCAA
95040438 AAAAAAAAGAAGAAAAAGAAAAACCTAAC
1 AAAAAAAA-AAG-AAAA-AAAAACCTAAC
*
95040467 AAAAAAAAAAGATAAAAAAACCTA
1 AAAAAAAAAAGAAAAAAAAACCTA
95040491 GCCACCTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 9 0.39
27 3 0.13
28 3 0.13
29 8 0.35
ACGTcount: A:0.77, C:0.09, G:0.08, T:0.06
Consensus pattern (26 bp):
AAAAAAAAAAGAAAAAAAAACCTAAC
Found at i:95040473 original size:51 final size:49
Alignment explanation
Indices: 95040371--95040476 Score: 151
Period size: 51 Copynumber: 2.1 Consensus size: 49
95040361 TAAGCCCCCC
* **
95040371 AAAAAACCTAACCCAAGAAAAAAAAAAGAAAAAGAAAAACCTACCCTAA
1 AAAAAACCTAACCCAAGAAAAAAAAAAGAAAAAGAAAAACCTAACAAAA
95040420 AAAAAACCTAACCCCCAA-AAAAAAAAGAAGAAAAAGAAAAACCTAACAAAA
1 AAAAAACCTAA--CCCAAGAAAAAAAA-AAGAAAAAGAAAAACCTAACAAAA
95040471 AAAAAA
1 AAAAAA
95040477 GATAAAAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
49 11 0.22
50 8 0.16
51 32 0.63
ACGTcount: A:0.71, C:0.19, G:0.06, T:0.05
Consensus pattern (49 bp):
AAAAAACCTAACCCAAGAAAAAAAAAAGAAAAAGAAAAACCTAACAAAA
Found at i:95041036 original size:2 final size:2
Alignment explanation
Indices: 95041031--95041067 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
95041021 TAAATACTAT
*
95041031 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
95041068 TTTAAATACC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:95045431 original size:33 final size:30
Alignment explanation
Indices: 95045384--95045456 Score: 83
Period size: 33 Copynumber: 2.3 Consensus size: 30
95045374 GGTACTAAGA
* *
95045384 AAAAAATATATATATATAAATAATAGTATT
1 AAAATATATATATATATAAATAATAATATT
* *
95045414 AGAAATCATATAGTATATATAACTGATAATATT
1 A-AAAT-ATATA-TATATATAAATAATAATATT
95045447 AAAATATATA
1 AAAATATATA
95045457 CATAATATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
30 1 0.03
31 8 0.22
32 9 0.25
33 18 0.50
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (30 bp):
AAAATATATATATATATAAATAATAATATT
Found at i:95045631 original size:14 final size:16
Alignment explanation
Indices: 95045602--95045633 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
95045592 AGGTAAATAT
95045602 AATAAAATGATATTAA
1 AATAAAATGATATTAA
95045618 AATAAAA-G-TATTAA
1 AATAAAATGATATTAA
95045632 AA
1 AA
95045634 ACAGTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 1 0.06
16 7 0.44
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (16 bp):
AATAAAATGATATTAA
Found at i:95045679 original size:3 final size:3
Alignment explanation
Indices: 95045671--95045915 Score: 162
Period size: 3 Copynumber: 79.0 Consensus size: 3
95045661 ACAAGGATAT
95045671 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * ** * * *
95045719 ATA ATA ATA ATA TTGA A-A CACA A-A AGCC ATT ATA ATA AAA ATA TTA
1 ATA ATA ATA ATA AT-A ATA -ATA ATA A-TA ATA ATA ATA ATA ATA ATA
* * * *
95045765 A-A ATA A-A GTA ATA GA-A ACA TTA CTA CAT- ATA TATA TATA CATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA ATA -ATA -ATA -ATA
* * * * *
95045808 CATGA AGA TATA CACTA AT- GTA TTTCA ATA ACA ACA ATA ATA ATA ATA
1 -AT-A ATA -ATA -A-TA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA
95045856 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
95045904 ATA ATA ATA ATA
1 ATA ATA ATA ATA
95045916 TTGAAATGCA
Statistics
Matches: 199, Mismatches: 25, Indels: 36
0.77 0.10 0.14
Matches are distributed among these distances:
2 10 0.05
3 160 0.80
4 25 0.13
5 4 0.02
ACGTcount: A:0.60, C:0.06, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:95046533 original size:12 final size:12
Alignment explanation
Indices: 95046516--95046558 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
95046506 AGGTAAATTT
95046516 TTTTTTTGTATA
1 TTTTTTTGTATA
95046528 TTTTTTTGTATA
1 TTTTTTTGTATA
95046540 TTTTTTTGTATA
1 TTTTTTTGTATA
95046552 TTTTTTT
1 TTTTTTT
95046559 TATGTTTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (12 bp):
TTTTTTTGTATA
Found at i:95046547 original size:24 final size:23
Alignment explanation
Indices: 95046516--95046566 Score: 84
Period size: 24 Copynumber: 2.2 Consensus size: 23
95046506 AGGTAAATTT
95046516 TTTTTTTGTATATTTTTTTGTATA
1 TTTTTTTGTATATTTTTTT-TATA
*
95046540 TTTTTTTGTATATTTTTTTTATG
1 TTTTTTTGTATATTTTTTTTATA
95046563 TTTT
1 TTTT
95046567 AATATATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 7 0.27
24 19 0.73
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (23 bp):
TTTTTTTGTATATTTTTTTTATA
Found at i:95046574 original size:23 final size:24
Alignment explanation
Indices: 95046524--95046575 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
95046514 TTTTTTTTTG
** *
95046524 TATATTTTTTTGTATATTTTTTTG
1 TATATTTTTTTGTATATTTTAATA
*
95046548 TATATTTTTTT-TATGTTTTAATA
1 TATATTTTTTTGTATATTTTAATA
95046571 TATAT
1 TATAT
95046576 AGGTTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (24 bp):
TATATTTTTTTGTATATTTTAATA
Found at i:95046977 original size:35 final size:35
Alignment explanation
Indices: 95046932--95047000 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
95046922 GAGTGTGTGA
*
95046932 TGGTGTTGGTGGCAGACAGCATGGGAGAATGGGAG
1 TGGTGCTGGTGGCAGACAGCATGGGAGAATGGGAG
*
95046967 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
95047001 AGAGGCAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.22, C:0.10, G:0.49, T:0.19
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATGGGAGAATGGGAG
Found at i:95047811 original size:53 final size:53
Alignment explanation
Indices: 95047731--95047927 Score: 184
Period size: 53 Copynumber: 3.5 Consensus size: 53
95047721 GCGTGCCCCG
* *
95047731 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAGAAATAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAA
* * * **
95047784 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AA-AACTAAAAATACCTCAGCGTGCCCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAACAAC-AAAAATA----A-------AA
*
95047846 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAA
*
95047899 AGGCTTAACTCACCTCTCGCAATATGAGT
1 AGGCTCAACTCACCTCTCGCAATATGAGT
95047928 CAATTTAAAA
Statistics
Matches: 114, Mismatches: 15, Indels: 30
0.72 0.09 0.19
Matches are distributed among these distances:
50 3 0.03
51 8 0.07
52 5 0.04
53 53 0.46
55 1 0.01
60 1 0.01
62 26 0.23
63 5 0.04
64 9 0.08
65 3 0.03
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (53 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAA
Found at i:95047903 original size:115 final size:116
Alignment explanation
Indices: 95047617--95047997 Score: 674
Period size: 116 Copynumber: 3.3 Consensus size: 116
95047607 GTGTCCTGAA
**
95047617 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAAAGGCAGAACTCACC
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAAAGGCTTAACTCACC
*
95047682 TTTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAG
66 TCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAG
*
95047733 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAGAAATAAAAAGGCTTAACTCACC
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAAAGGCTTAACTCACC
95047798 TCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTG-CCCGAG
66 TCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAG
95047848 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAAAGGCTTAACTCACC
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAAAGGCTTAACTCACC
* **
95047913 TCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGTCTTGAG
66 TCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAG
* *
95047964 GCTCAACTCACCTCTCGCAATATGAGTTAATTTT
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTT
95047998 TTTTTGATGA
Statistics
Matches: 255, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
115 114 0.45
116 141 0.55
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (116 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAAAGGCTTAACTCACC
TCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAG
Found at i:95048096 original size:14 final size:14
Alignment explanation
Indices: 95048079--95048107 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
95048069 GATTTTGACG
95048079 AACAGAAATTGAAA
1 AACAGAAATTGAAA
95048093 AACAGAAATTGAAA
1 AACAGAAATTGAAA
95048107 A
1 A
95048108 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:95048983 original size:24 final size:24
Alignment explanation
Indices: 95048938--95048984 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
95048928 TGTGTTAATC
***
95048938 AAGACGCCCTTTTTTTTTTTTTTT
1 AAGACGCCCTTTTTTGGGTTTTTT
*
95048962 AAGATGCCCTTTTTTGGGTTTTT
1 AAGACGCCCTTTTTTGGGTTTTT
95048985 ATCTTGATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.13, C:0.15, G:0.15, T:0.57
Consensus pattern (24 bp):
AAGACGCCCTTTTTTGGGTTTTTT
Found at i:95060078 original size:21 final size:22
Alignment explanation
Indices: 95060032--95060078 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
95060022 ATAAACAAAT
* *
95060032 ATAAAGTACATTTAGTAATAAT
1 ATAAAGTACATATAGTAATAAG
95060054 ATAAAGTA-ATATA-TACATAAG
1 ATAAAGTACATATAGTA-ATAAG
95060075 ATAA
1 ATAA
95060079 TATGCAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 2 0.09
21 12 0.55
22 8 0.36
ACGTcount: A:0.55, C:0.04, G:0.09, T:0.32
Consensus pattern (22 bp):
ATAAAGTACATATAGTAATAAG
Found at i:95060528 original size:33 final size:30
Alignment explanation
Indices: 95060466--95060537 Score: 83
Period size: 33 Copynumber: 2.3 Consensus size: 30
95060456 TGGTACTAAG
*
95060466 AAAA-ATATATATATATAAATAATAGTATT
1 AAAATATATATATATATAAATAATAATATT
* *
95060495 AGAAATCATATAGTATATATAACTGATAATATT
1 A-AAAT-ATATA-TATATATAAATAATAATATT
95060528 AAAATATATA
1 AAAATATATA
95060538 CATAATATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
29 1 0.03
30 3 0.08
31 5 0.14
32 9 0.25
33 18 0.50
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.36
Consensus pattern (30 bp):
AAAATATATATATATATAAATAATAATATT
Found at i:95060756 original size:3 final size:3
Alignment explanation
Indices: 95060748--95060811 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
95060738 ACAAGGATAT
95060748 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
95060796 ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
95060812 ATATTGAAAN
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:95063232 original size:93 final size:93
Alignment explanation
Indices: 95063120--95063291 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
95063110 CGCCCATAAG
* *
95063120 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95063185 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
95063213 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95063278 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
95063292 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:95063288 original size:46 final size:46
Alignment explanation
Indices: 95063113--95063288 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
95063103 TGTAACCCGC
* * *
95063113 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
95063159 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
95063209 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
95063252 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
95063289 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:95070809 original size:93 final size:93
Alignment explanation
Indices: 95070697--95070868 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
95070687 CGCCCATAAG
* *
95070697 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95070762 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
95070790 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95070855 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
95070869 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:95070865 original size:46 final size:46
Alignment explanation
Indices: 95070690--95070865 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
95070680 TGTAACCCGC
* * *
95070690 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
95070736 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
95070786 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
95070829 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
95070866 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:95074379 original size:40 final size:38
Alignment explanation
Indices: 95074322--95074472 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 38
95074312 TCGAATGATG
* * *
95074322 TCCGGGCTAACTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGACTAA-TCCCGAAGGCTTTGTGC-AAGTTACTAAA
* * *
95074362 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGACTA--ATCCCGAAGGC-TTTGTGCAAGTTACTAAA
*
95074402 TCCGGGCTAATCCCGAAGGCTTTGTGCAAGTTACTAAA
1 TCCGGACTAATCCCGAAGGCTTTGTGCAAGTTACTAAA
* ** *
95074440 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGT
1 TCCGGACTAA-TCCCGAAGGC-TTTGTGCAAGT
95074473 CGCTATAACC
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 25 0.27
39 18 0.20
40 41 0.45
41 7 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (38 bp):
TCCGGACTAATCCCGAAGGCTTTGTGCAAGTTACTAAA
Found at i:95074485 original size:40 final size:40
Alignment explanation
Indices: 95074375--95074503 Score: 140
Period size: 40 Copynumber: 3.3 Consensus size: 40
95074365 GGACTAGGAT
* * * *
95074375 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAA-TC
1 CCGAAGGCATTCGTGCAAGTTACTAAACCCGGGTTAAGTC
*
95074414 CCGAAGGC-TTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCAAGTTACTAAACCCGGGTTAAGTC
** *
95074453 CCGAAGGCATTCGTGCAAGTCGCTATAA-CCGGGCTT-CGTC
1 CCGAAGGCATTCGTGCAAGTTACTA-AACCCGGG-TTAAGTC
95074493 CCGAAGGCATT
1 CCGAAGGCATT
95074504 TGAGCGAGTT
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 23 0.30
39 18 0.23
40 32 0.42
41 4 0.05
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCAAGTTACTAAACCCGGGTTAAGTC
Found at i:95074487 original size:78 final size:78
Alignment explanation
Indices: 95074322--95074473 Score: 198
Period size: 78 Copynumber: 1.9 Consensus size: 78
95074312 TCGAATGATG
* * * *
95074322 TCCGGGCTAACTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
95074387 GTGCGAGTTAATAAA
64 GTGCAAGTCAATAAA
**
95074402 TCCGGGCTAATCCCGAAGGCTTTGTGCAAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTCG
1 TCCGGGCTAATCCCGAAGGCTTTGTGCAAGTTACTAAACCCGGACTAAGAT-CCGAAGGCATTCG
95074466 TGCAAGTC
65 TGCAAGTC
95074474 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (78 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCAAGTTACTAAACCCGGACTAAGATCCGAAGGCATTCGT
GCAAGTCAATAAA
Found at i:95077887 original size:29 final size:29
Alignment explanation
Indices: 95077855--95078043 Score: 274
Period size: 29 Copynumber: 6.5 Consensus size: 29
95077845 ATAGTGAATC
95077855 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
95077884 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
95077914 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
95077943 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* *
95077972 CGCACACTTAGTGCTATATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AGCT
* * * * *
95078000 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAGCT
95078030 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95078044 CAATCTTGTC
Statistics
Matches: 148, Mismatches: 7, Indels: 9
0.90 0.04 0.05
Matches are distributed among these distances:
27 2 0.01
28 20 0.14
29 79 0.53
30 46 0.31
31 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:95085674 original size:40 final size:40
Alignment explanation
Indices: 95085512--95085713 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
95085502 CGAATGATGT
*
95085512 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
95085552 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
95085591 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
95085629 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
95085670 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
95085710 CCGG
1 CCGG
95085714 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:95085676 original size:78 final size:79
Alignment explanation
Indices: 95085511--95085662 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
95085501 TCGAATGATG
* * *
95085511 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
95085576 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
95085591 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
95085654 GTGCAAGTC
65 GTGCAAGTC
95085663 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:95087682 original size:9 final size:9
Alignment explanation
Indices: 95087670--95087726 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
95087660 TTTGATAAAC
95087670 ATGATATGT
1 ATGATATGT
*
95087679 ATGATATGCAC
1 ATGATATG--T
*
95087690 ATGACATGT
1 ATGATATGT
*
95087699 ATGATATGCAC
1 ATGATATG--T
95087710 ATGATATGT
1 ATGATATGT
95087719 ATGATATG
1 ATGATATG
95087727 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:95087693 original size:20 final size:20
Alignment explanation
Indices: 95087668--95087730 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
95087658 ATTTTGATAA
95087668 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
95087688 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
95087708 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
95087728 ACA
1 ACA
95087731 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:95087840 original size:24 final size:23
Alignment explanation
Indices: 95087784--95087949 Score: 235
Period size: 23 Copynumber: 7.0 Consensus size: 23
95087774 GAGGAAGTGA
95087784 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
95087807 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
95087830 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
95087854 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
95087878 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
95087901 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
95087925 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
95087949 A
1 A
95087950 TGATAAAGCA
Statistics
Matches: 130, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 63 0.48
24 57 0.44
25 10 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:95087900 original size:71 final size:70
Alignment explanation
Indices: 95087784--95087948 Score: 260
Period size: 71 Copynumber: 2.3 Consensus size: 70
95087774 GAGGAAGTGA
*
95087784 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCA
95087849 GTTATC
65 GTTATC
*
95087855 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTTTGCCCCAG
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAG
*
95087920 TTATT
66 TTATC
*
95087925 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
95087949 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
70 32 0.36
71 56 0.64
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (70 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAG
TTATC
Found at i:95088177 original size:31 final size:31
Alignment explanation
Indices: 95088142--95088205 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
95088132 CGTTTACCGT
*
95088142 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
95088173 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
95088204 AA
1 AA
95088206 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:95089061 original size:27 final size:27
Alignment explanation
Indices: 95089031--95089121 Score: 137
Period size: 27 Copynumber: 3.4 Consensus size: 27
95089021 GAATACTTTA
95089031 GTTTTACCCTTGATTTATACAATTGCT
1 GTTTTACCCTTGATTTATACAATTGCT
95089058 GTTTTACCCTTGATTTATACAATTGCT
1 GTTTTACCCTTGATTTATACAATTGCT
* * * * *
95089085 GTTTTACCCTCGATTTACAAAATTACC
1 GTTTTACCCTTGATTTATACAATTGCT
95089112 GTTTTACCCT
1 GTTTTACCCT
95089122 CGACTGAGAA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.23, C:0.22, G:0.10, T:0.45
Consensus pattern (27 bp):
GTTTTACCCTTGATTTATACAATTGCT
Found at i:95089259 original size:27 final size:27
Alignment explanation
Indices: 95089158--95089280 Score: 135
Period size: 27 Copynumber: 4.6 Consensus size: 27
95089148 TGTAGGGTAG
*
95089158 AATTACCAAAATACCCCT-AGTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* ** *
95089184 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
*
95089211 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
**
95089238 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
95089265 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
95089281 TTGACTTTCT
Statistics
Matches: 81, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
26 22 0.27
27 55 0.68
28 4 0.05
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:95089268 original size:54 final size:54
Alignment explanation
Indices: 95089158--95089281 Score: 151
Period size: 54 Copynumber: 2.3 Consensus size: 54
95089148 TGTAGGGTAG
* * ** ***
95089158 AATTACCAAAATACCC-CTAGTTGTAAAATTACCAAAATACCACTGGTTTGTGA
1 AATTACCGAAATACCCTCAAGTTGTAAAATTACCAAAATACCACTAATTTACAA
* *
95089211 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAA
1 AATTACCGAAATACCCTCAAGTTGTAAAATTACCAAAATACCACTAATTTACAA
*
95089265 AATTACAGAAATACCCT
1 AATTACCGAAATACCCT
95089282 TGACTTTCTA
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
53 15 0.25
54 45 0.75
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.27
Consensus pattern (54 bp):
AATTACCGAAATACCCTCAAGTTGTAAAATTACCAAAATACCACTAATTTACAA
Found at i:95089302 original size:28 final size:27
Alignment explanation
Indices: 95089258--95089338 Score: 85
Period size: 28 Copynumber: 3.0 Consensus size: 27
95089248 ATACCCCTAA
*
95089258 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCCTTG-C
* * *
95089286 TTT-CTAAAATTATAGAAATAACATTGG
1 TTTAC-AAAATTATAGAAATACCCTTGC
95089313 TTTACAAAATTACT-GAAATACCCTTG
1 TTTACAAAATTA-TAGAAATACCCTTG
95089339 GTTTGTAGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
27 21 0.48
28 23 0.52
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCCTTGC
Found at i:95089330 original size:27 final size:27
Alignment explanation
Indices: 95089258--95089342 Score: 93
Period size: 27 Copynumber: 3.1 Consensus size: 27
95089248 ATACCCCTAA
* *
95089258 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCCTTG-G
* *
95089286 TTT-CTAAAATTA-TAGAAATAACATTGG
1 TTTAC-AAAATTACT-GAAATACCCTTGG
95089313 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCCTTGG
95089340 TTT
1 TTT
95089343 GTAGATTTAC
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
27 25 0.53
28 22 0.47
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTTGG
Found at i:95089427 original size:27 final size:27
Alignment explanation
Indices: 95089397--95089456 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
95089387 CCTCTAATAA
95089397 GTAAAAAGACCATAA-AGCCCCTGTATG
1 GTAAAAAGACCATAATA-CCCCTGTATG
** *
95089424 GTAAAGTGACCGTAATACCCCTGTATG
1 GTAAAAAGACCATAATACCCCTGTATG
95089451 GTAAAA
1 GTAAAA
95089457 TGTCGAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
GTAAAAAGACCATAATACCCCTGTATG
Found at i:95090301 original size:25 final size:25
Alignment explanation
Indices: 95090267--95090361 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
95090257 AGGAAGTGCT
95090267 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
95090292 AAAAGGGCTTTGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
95090317 AAAAGGGCTTTGCCCCAGATTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
95090342 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
95090362 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:95090374 original size:24 final size:23
Alignment explanation
Indices: 95090267--95090388 Score: 109
Period size: 25 Copynumber: 5.0 Consensus size: 23
95090257 AGGAAGTGCT
*
95090267 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAG-TTA-TG
* *
95090292 AAAAGGGCTTTGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCC-AGTTA-TG
*
95090317 AAAAGGGCTTTGCCCCAGATTATCA
1 AAAAGGGCTTTGCCCCAG-TTAT-G
*
95090342 AAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTTTGCCCCAGTTATG
**
95090365 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
95090389 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
23 5 0.06
24 12 0.14
25 67 0.79
26 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATG
Found at i:95090573 original size:42 final size:42
Alignment explanation
Indices: 95090509--95090600 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
95090499 TTGTCTCCCC
*
95090509 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
* *
95090551 AAATTGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
95090593 AAATGGGC
1 AAATGGGC
95090601 CTATGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:95097231 original size:46 final size:44
Alignment explanation
Indices: 95097173--95097265 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
95097163 CCGATATATT
*
95097173 AGCTCGAGAGAGCTCACTAT-TTTCAGCTCGTATGAGCTTACTGTTC
1 AGCTCGAGAGAGCT-ACT-TGTTTCAGCTCG-ATAAGCTTACTGTTC
* *
95097219 AGCTCGATAGAGCTTCTTGTTTCAGCTCGATAAGCTTACTGTTC
1 AGCTCGAGAGAGCTACTTGTTTCAGCTCGATAAGCTTACTGTTC
95097263 AGC
1 AGC
95097266 AGCTTAGGAG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 18 0.42
45 12 0.28
46 13 0.30
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (44 bp):
AGCTCGAGAGAGCTACTTGTTTCAGCTCGATAAGCTTACTGTTC
Found at i:95097246 original size:23 final size:23
Alignment explanation
Indices: 95097173--95097265 Score: 97
Period size: 22 Copynumber: 4.1 Consensus size: 23
95097163 CCGATATATT
* * *
95097173 AGCTCGAGAGAGCTCACTATTTTC
1 AGCTCGATAGAGCTTACT-GTTTC
95097197 AGCTCG-TATGAGCTTACTG-TTC
1 AGCTCGATA-GAGCTTACTGTTTC
95097219 AGCTCGATAGAGCTT-CTTGTTTC
1 AGCTCGATAGAGCTTAC-TGTTTC
95097242 AGCTCGATA-AGCTTACTG-TTC
1 AGCTCGATAGAGCTTACTGTTTC
95097263 AGC
1 AGC
95097266 AGCTTAGGAG
Statistics
Matches: 61, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
21 7 0.11
22 24 0.39
23 16 0.26
24 14 0.23
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (23 bp):
AGCTCGATAGAGCTTACTGTTTC
Found at i:95097802 original size:14 final size:14
Alignment explanation
Indices: 95097783--95097812 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
95097773 TAAAGAATGA
95097783 TAGTTATATTACTT
1 TAGTTATATTACTT
95097797 TAGTTATATTACTT
1 TAGTTATATTACTT
95097811 TA
1 TA
95097813 TATCATGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (14 bp):
TAGTTATATTACTT
Found at i:95105828 original size:45 final size:45
Alignment explanation
Indices: 95105778--95105864 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
95105768 CCAAAACAGG
* * *
95105778 TGTCACATATATCACGAACTCAGACCATAACTCAATGAGTTCGGA
1 TGTCACATATATCACGAAATCAAACCACAACTCAATGAGTTCGGA
* *
95105823 TGTCACATATATCATGAAATCAAACCACAACTGAATGAGTTC
1 TGTCACATATATCACGAAATCAAACCACAACTCAATGAGTTC
95105865 AGATTACATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCACGAAATCAAACCACAACTCAATGAGTTCGGA
Found at i:95110487 original size:46 final size:46
Alignment explanation
Indices: 95110420--95110594 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
95110410 TGTAACCCGC
*
95110420 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* * *
95110466 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * * * *
95110516 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* *
95110559 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
95110595 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 63 0.59
47 27 0.25
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:95110535 original size:93 final size:93
Alignment explanation
Indices: 95110427--95110598 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
95110417 CGCCCATAAG
* * *
95110427 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95110492 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
*
95110520 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
95110585 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
95110599 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:95119722 original size:53 final size:53
Alignment explanation
Indices: 95119562--95119765 Score: 140
Period size: 53 Copynumber: 3.8 Consensus size: 53
95119552 AGGGTTTAAG
** * * * *
95119562 GATACCAAATAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGG-AAA
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAA
* * * * * * * * * * *
95119615 GGAAATCATGTAAGAACATGTCAATACATGACATTGATAAACTACGATAAGGCAAA
1 -GATACCACGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAA
* * * * * * *
95119671 GATCCCATGTAATACCATGCCAAGGCGTGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
*
95119724 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
95119766 TAAAAAGGAA
Statistics
Matches: 110, Mismatches: 37, Indels: 7
0.71 0.24 0.05
Matches are distributed among these distances:
53 44 0.40
54 31 0.28
55 32 0.29
56 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (53 bp):
GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:95122481 original size:20 final size:20
Alignment explanation
Indices: 95122456--95122502 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
95122446 GATTTGATAT
95122456 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
95122476 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
95122496 ACATGAT
1 ACATGAT
95122503 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:95122621 original size:25 final size:25
Alignment explanation
Indices: 95122548--95122655 Score: 109
Period size: 25 Copynumber: 4.4 Consensus size: 25
95122538 GGAGGAAGTA
* *
95122548 TAAAAGGGC-TATGCCCCAGTTTACC
1 TAAAAGGGCTTTTGCCCCAGTTTA-T
*
95122573 GAAAAGGGCTTTTG-CCCAGTTTAT
1 TAAAAGGGCTTTTGCCCCAGTTTAT
95122597 TAAAAGGGCTTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTTGCCCCAGTTTAT
* *
95122622 CAAAAGAGG--TTTGCCCCA-ATTAT
1 TAAAAG-GGCTTTTGCCCCAGTTTAT
95122645 TAAAAGAGGCT
1 TAAAAG-GGCT
95122656 AGGCCTCCAG
Statistics
Matches: 71, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
23 12 0.17
24 22 0.31
25 32 0.45
26 5 0.07
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (25 bp):
TAAAAGGGCTTTTGCCCCAGTTTAT
Found at i:95122898 original size:31 final size:31
Alignment explanation
Indices: 95122863--95122926 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
95122853 CGTTTATAGT
*
95122863 AAAGGCTTCGGCCCAGTCATATGATATATGA
1 AAAGGCTTCGGCCCAGTCATATGAAATATGA
**
95122894 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTCATATGAAATATGA
95122925 AA
1 AA
95122927 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTCATATGAAATATGA
Found at i:95130592 original size:20 final size:20
Alignment explanation
Indices: 95130567--95130633 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
95130557 GATTTGATAT
95130567 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
95130587 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
95130607 ACATGATATGTATGATACGC
1 ACATGATATGTATGATATGC
95130627 ACATGAT
1 ACATGAT
95130634 GCATTCATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:95130594 original size:11 final size:11
Alignment explanation
Indices: 95130578--95130633 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
95130568 CATGATTGAT
95130578 ATGATATGCAC
1 ATGATATGCAC
*
95130589 ATGATATG--T
1 ATGATATGCAC
95130598 ATGATATGCAC
1 ATGATATGCAC
*
95130609 ATGATATG--T
1 ATGATATGCAC
*
95130618 ATGATACGCAC
1 ATGATATGCAC
95130629 ATGAT
1 ATGAT
95130634 GCATTCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:95130738 original size:24 final size:25
Alignment explanation
Indices: 95130681--95130773 Score: 113
Period size: 25 Copynumber: 3.8 Consensus size: 25
95130671 AGGAAGTGCA
* *
95130681 AAAAGGGC-TATGCCCCAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTATC
*
95130705 GAAAAGGGCTTTTG-CCCAGTTTATT
1 -AAAAGGGCTTTTGCCCCAGTTTATC
95130730 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAGTTTATC
*
95130755 AAAAAGG--TTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
95130774 ATTGAAAGAG
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
23 12 0.20
24 13 0.21
25 33 0.54
26 3 0.05
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATC
Found at i:95131041 original size:31 final size:31
Alignment explanation
Indices: 95130998--95131058 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
95130988 TTACAGTAAG
95130998 GGCTTCGACCCAGTCATATGAAATATGAAAA
1 GGCTTCGACCCAGTCATATGAAATATGAAAA
* **
95131029 GGCTTCGGCCCAGTGTTATGAAATATGAAA
1 GGCTTCGACCCAGTCATATGAAATATGAAA
95131059 TATGAAAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (31 bp):
GGCTTCGACCCAGTCATATGAAATATGAAAA
Found at i:95134809 original size:24 final size:23
Alignment explanation
Indices: 95134778--95134830 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 23
95134768 TATCGATATA
95134778 TCAGCTTGAGAGAGCTTACTGGTT
1 TCAGCTTGAGAGAGCTTACT-GTT
*
95134802 TCAGCTTGATAGAGCTTACTGTT
1 TCAGCTTGAGAGAGCTTACTGTT
*
95134825 TAAGCT
1 TCAGCT
95134831 CGTATGAGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 8 0.30
24 19 0.70
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.36
Consensus pattern (23 bp):
TCAGCTTGAGAGAGCTTACTGTT
Found at i:95134830 original size:23 final size:23
Alignment explanation
Indices: 95134780--95134894 Score: 92
Period size: 23 Copynumber: 5.0 Consensus size: 23
95134770 TCGATATATC
* *
95134780 AGCTTGAGAGAGCTTACTGGTTTC
1 AGCTTGATAGAGCTTACT-GTTTA
95134804 AGCTTGATAGAGCTTACTGTTTA
1 AGCTTGATAGAGCTTACTGTTTA
* *
95134827 AGCTCG-TATGAGCTTA-TTTTTCA
1 AGCTTGATA-GAGCTTACTGTTT-A
* * *
95134850 A-CTCGATAAAGCTTACTGTTTT
1 AGCTTGATAGAGCTTACTGTTTA
* * *
95134872 AGCTTAATAGAGTTTACTATTTA
1 AGCTTGATAGAGCTTACTGTTTA
95134895 GTAGCTCAGG
Statistics
Matches: 73, Mismatches: 13, Indels: 11
0.75 0.13 0.11
Matches are distributed among these distances:
22 17 0.23
23 39 0.53
24 17 0.23
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (23 bp):
AGCTTGATAGAGCTTACTGTTTA
Found at i:95137846 original size:17 final size:18
Alignment explanation
Indices: 95137824--95137857 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
95137814 TGATTTAGGT
*
95137824 AAAGTG-ATGTATGAAGG
1 AAAGTGCATATATGAAGG
95137841 AAAGTGCATATATGAAG
1 AAAGTGCATATATGAAG
95137858 TTAACTAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.29, T:0.24
Consensus pattern (18 bp):
AAAGTGCATATATGAAGG
Found at i:95141067 original size:48 final size:48
Alignment explanation
Indices: 95141003--95141099 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
95140993 TCTATTGATA
*
95141003 TTAAATATTTTTAAGCATAACCTAATGGTTTTTGATTATTCATTGAGT
1 TTAAATATTTTTAAGCATAACCTAATGGTTTTTGATTATTCATTAAGT
95141051 TTAAATATTTTTAAGCATAACCTAATGGTTTTTGATTATTCATTAAGT
1 TTAAATATTTTTAAGCATAACCTAATGGTTTTTGATTATTCATTAAGT
95141099 T
1 T
95141100 CTCCCCAAAC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.48
Consensus pattern (48 bp):
TTAAATATTTTTAAGCATAACCTAATGGTTTTTGATTATTCATTAAGT
Found at i:95144731 original size:29 final size:29
Alignment explanation
Indices: 95144551--95144710 Score: 302
Period size: 29 Copynumber: 5.5 Consensus size: 29
95144541 GTGACGAGAT
95144551 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
95144580 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
95144609 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
95144638 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
95144667 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
95144696 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
95144711 GAGCTCGAAG
Statistics
Matches: 127, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 127 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:95144739 original size:87 final size:87
Alignment explanation
Indices: 95144547--95144731 Score: 293
Period size: 87 Copynumber: 2.1 Consensus size: 87
95144537 TACGGTGACG
*
95144547 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATG
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAATATATG
*
95144611 GCACTAAGTGTGCATGCTGGAA
66 GCACTAAGTGTGCATGCTCGAA
* *
95144633 ATATATGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGGAAATATATG
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAATATATG
95144698 GCACTAAGTGTGCGA-GCTCGAA
66 GCACTAAGTGTGC-ATGCTCGAA
* *
95144720 GGGTATGGCACT
1 AGATATGGCACT
95144732 GTGTGTGCGG
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
86 3 0.03
87 86 0.96
88 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.26
Consensus pattern (87 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAATATATG
GCACTAAGTGTGCATGCTCGAA
Found at i:95144757 original size:87 final size:87
Alignment explanation
Indices: 95144547--95144768 Score: 261
Period size: 87 Copynumber: 2.6 Consensus size: 87
95144537 TACGGTGACG
* * *
95144547 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATG
1 AGATATGGCACTAAGTGTGCAGGCTGGAAAAACATGGCACTAAGTGTGCATGCTGGAAATATATG
*
95144611 GCACTAAGTGTGCATGCTGGAA
66 GCACTAAGTGTGCATGCTCGAA
* * * *
95144633 ATATATGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGGAAATATATG
1 AGATATGGCACTAAGTGTGCAGGCTGGAAAAACATGGCACTAAGTGTGCATGCTGGAAATATATG
95144698 GCACTAAGTGTGCGA-GCTCGAA
66 GCACTAAGTGTGC-ATGCTCGAA
* * ** * * **
95144720 GGGTATGGCACTGTGTGTGCGGGCT-TAAATCGCATGGCACTAAGTGTGC
1 AGATATGGCACTAAGTGTGCAGGCTGGAAA-AACATGGCACTAAGTGTGC
95144769 GAAATCGAGT
Statistics
Matches: 117, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
86 6 0.05
87 110 0.94
88 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (87 bp):
AGATATGGCACTAAGTGTGCAGGCTGGAAAAACATGGCACTAAGTGTGCATGCTGGAAATATATG
GCACTAAGTGTGCATGCTCGAA
Found at i:95152527 original size:29 final size:29
Alignment explanation
Indices: 95152376--95152506 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
95152366 GTGACGAGAT
95152376 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
95152405 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
95152434 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
95152463 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
95152492 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
95152507 GAGCTCGAAG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:95152553 original size:87 final size:87
Alignment explanation
Indices: 95152376--95152564 Score: 229
Period size: 87 Copynumber: 2.2 Consensus size: 87
95152366 GTGACGAGAT
* *
95152376 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
* *
95152441 AAGTGTGCATGCTGGAAAAATA
66 AAGTGTGCAGGCTGGAAAAACA
* * *
95152463 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
** * * **
95152527 TGTGTGTGCGGGCT-TAAATCGCA
65 TAAGTGTGCAGGCTGGAAA-AACA
95152550 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
95152565 GAAATCGAGT
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
86 3 0.03
87 82 0.95
88 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGGAAAAACA
Found at i:95154657 original size:40 final size:40
Alignment explanation
Indices: 95154594--95154707 Score: 158
Period size: 39 Copynumber: 2.9 Consensus size: 40
95154584 GCACACTAAT
* * *
95154594 CCGAAGCTATCTCAAATCACACACTAAGTGCCGTACATAG
1 CCGAAGCTATCTCGAATCGCACACTAAGTGCCATACATAG
* *
95154634 CCGAAGCTATCTTGAATCGCACACT-AGTGCCATATATAG
1 CCGAAGCTATCTCGAATCGCACACTAAGTGCCATACATAG
* *
95154673 CTGAACCTATCTCGAATCGCACACTAAGTGCCATA
1 CCGAAGCTATCTCGAATCGCACACTAAGTGCCATA
95154708 TATAACCAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
39 34 0.52
40 31 0.48
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (40 bp):
CCGAAGCTATCTCGAATCGCACACTAAGTGCCATACATAG
Found at i:95154683 original size:39 final size:40
Alignment explanation
Indices: 95154594--95154711 Score: 157
Period size: 40 Copynumber: 3.0 Consensus size: 40
95154584 GCACACTAAT
* * * * *
95154594 CCGAAGCTATCTCAAATCACACACTAAGTGCCGTACATAG
1 CCGAACCTATCTCGAATCGCACACTAAGTGCCATATATAG
* *
95154634 CCGAAGCTATCTTGAATCGCACACT-AGTGCCATATATAG
1 CCGAACCTATCTCGAATCGCACACTAAGTGCCATATATAG
*
95154673 CTGAACCTATCTCGAATCGCACACTAAGTGCCATATATA
1 CCGAACCTATCTCGAATCGCACACTAAGTGCCATATATA
95154712 ACCAAATTGT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.49
40 35 0.51
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (40 bp):
CCGAACCTATCTCGAATCGCACACTAAGTGCCATATATAG
Found at i:95155087 original size:21 final size:20
Alignment explanation
Indices: 95155063--95155101 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
95155053 AAACTTGTAT
95155063 ATCTATCAACAAACATTCATA
1 ATCTATCAACAAA-ATTCATA
*
95155084 ATCTATCAAGAAAATTCA
1 ATCTATCAACAAAATTCA
95155102 AAATACACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.49, C:0.21, G:0.03, T:0.28
Consensus pattern (20 bp):
ATCTATCAACAAAATTCATA
Found at i:95163563 original size:46 final size:46
Alignment explanation
Indices: 95163510--95163692 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
95163500 TATATATACA
* * * *
95163510 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
95163556 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
95163602 CATCTCATACACGTTTCGCATTATCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
95163648 CATCTCATACACATTTCGCATTCGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
95163693 ATACACTTCC
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 126 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:95163737 original size:47 final size:47
Alignment explanation
Indices: 95163666--95164043 Score: 535
Period size: 47 Copynumber: 8.1 Consensus size: 47
95163656 ACACATTTCG
* * * * * * *
95163666 CATTCGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATTA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* *
95163713 CGTTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
95163760 C-TTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
95163806 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCCTCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
95163853 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
95163900 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
95163947 CATTGGCCATTCGGCCTTGTCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * * **
95163994 CATTTGTCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
95164041 CAT
1 CAT
95164044 AAAATCCTAA
Statistics
Matches: 305, Mismatches: 24, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
46 45 0.15
47 260 0.85
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:95163902 original size:23 final size:23
Alignment explanation
Indices: 95163875--95163949 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
95163865 GGCCTTATCA
95163875 CACATATGCATGTTCACATTCAT
1 CACATATGCATGTTCACATTCAT
* *
95163898 CACAT-TGGCCA--TTCGGCCTT-AT
1 CACATAT-G-CATGTTC-ACATTCAT
95163920 CACACATATGCATGTTCACATTCAT
1 --CACATATGCATGTTCACATTCAT
95163945 CACAT
1 CACAT
95163950 TGGCCATTCG
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
22 6 0.15
23 16 0.41
24 11 0.28
25 6 0.15
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (23 bp):
CACATATGCATGTTCACATTCAT
Found at i:95165853 original size:39 final size:39
Alignment explanation
Indices: 95165772--95165926 Score: 229
Period size: 39 Copynumber: 3.9 Consensus size: 39
95165762 TATGGTAACC
* * * *
95165772 CGCACAAATGCCTTCAAGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTC-GGGCTTAGCCCGGATATCACAACT
* *
95165812 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
95165851 CGCACCATTGCGTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
95165890 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
95165927 TTCATACACA
Statistics
Matches: 103, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 89 0.86
40 14 0.14
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:95175808 original size:70 final size:71
Alignment explanation
Indices: 95175725--95175887 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
95175715 CGATTTGTCT
95175725 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
95175789 CTTTCA
66 CTTTCA
95175795 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
95175860 CTTTCA
66 CTTTCA
95175866 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
95175888 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:95175925 original size:71 final size:70
Alignment explanation
Indices: 95175725--95175921 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
95175715 CGATTTGTCT
* * * *
95175725 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
95175789 CTTTCA
65 CTTTCA
* * * *
95175795 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
95175860 CTTTCA
65 CTTTCA
* *
95175866 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
95175922 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 53 0.45
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:95183342 original size:71 final size:71
Alignment explanation
Indices: 95183258--95183421 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
95183248 CGATTTGTCT
95183258 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
95183323 CTTTCA
66 CTTTCA
95183329 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
95183394 CTTTCA
66 CTTTCA
95183400 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
95183422 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:95183459 original size:71 final size:70
Alignment explanation
Indices: 95183258--95183455 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
95183248 CGATTTGTCT
* * * *
95183258 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
95183323 CTTTCA
65 CTTTCA
* * * *
95183329 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
95183394 CTTTCA
65 CTTTCA
* *
95183400 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
95183456 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:95190964 original size:23 final size:23
Alignment explanation
Indices: 95190918--95190976 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
95190908 GATGAGATAC
* *
95190918 TGACCTTTTCGTTGATATCATTT
1 TGACCTTTTCATTGACATCATTT
* *
95190941 TGACCTTTTCATTTACATCCTTT
1 TGACCTTTTCATTGACATCATTT
95190964 TCGACCTTCTTCA
1 T-GACCTT-TTCA
95190977 ATGGATCTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 20 0.67
24 6 0.20
25 4 0.13
ACGTcount: A:0.17, C:0.25, G:0.08, T:0.49
Consensus pattern (23 bp):
TGACCTTTTCATTGACATCATTT
Found at i:95192272 original size:46 final size:46
Alignment explanation
Indices: 95192142--95192358 Score: 169
Period size: 46 Copynumber: 4.6 Consensus size: 46
95192132 GTGTGATAGC
* *
95192142 GTAAGA-CATGTCTGGGAC-ATGCATCGGCCTTGAGATGTAAGCCAGT
1 GTAAGACCATGTCTGGGACTA-GCATCGGCCTAGAGATGT-AGTCAGT
* *
95192188 GTAAGA-CATGTTTGGGACTCGCATCGG-CTACGAGATGT-GTCAGT
1 GTAAGACCATGTCTGGGACTAGCATCGGCCTA-GAGATGTAGTCAGT
* *
95192232 GTAAGACCATGTCTGGGACGTAGCATCGGCAC-AGATATGTGAGAGCTAGT
1 GTAAGACCATGTCTGGGAC-TAGCATCGGC-CTAGAGATGT-AG-TC-AGT
* * **
95192282 GTAAGACCATGTCTAGGAC-ACGACGTCGGCCTAGATTTCGATAGTCAGT
1 GTAAGACCATGTCTGGGACTA-G-CATCGGCCTAGAGAT-G-TAGTCAGT
*
95192331 GTAAGACCATGTCTGGGACATGGCATCG
1 GTAAGACCATGTCTGGGAC-TAGCATCG
95192359 ATATTACACC
Statistics
Matches: 139, Mismatches: 15, Indels: 31
0.75 0.08 0.17
Matches are distributed among these distances:
44 11 0.08
45 13 0.09
46 45 0.32
47 1 0.01
48 3 0.02
49 28 0.20
50 34 0.24
51 3 0.02
52 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
GTAAGACCATGTCTGGGACTAGCATCGGCCTAGAGATGTAGTCAGT
Found at i:95192311 original size:50 final size:50
Alignment explanation
Indices: 95192226--95192346 Score: 128
Period size: 50 Copynumber: 2.4 Consensus size: 50
95192216 TACGAGATGT
*
95192226 GTCAGTGTAAGACCATGTCTGG-GACGTAGCATCGGCAC-AGATATGT-GAGA
1 GTCAGTGTAAGACCATGTCTGGACACGTAGCATCGGC-CTAGAT-T-TCGAGA
* *
95192276 G-CTAGTGTAAGACCATGTCTAGGACACG-A-CGTCGGCCTAGATTTCGATA
1 GTC-AGTGTAAGACCATGTCT-GGACACGTAGCATCGGCCTAGATTTCGAGA
95192325 GTCAGTGTAAGACCATGTCTGG
1 GTCAGTGTAAGACCATGTCTGG
95192347 GACATGGCAT
Statistics
Matches: 62, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
48 3 0.05
49 24 0.39
50 29 0.47
51 3 0.05
52 3 0.05
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGACACGTAGCATCGGCCTAGATTTCGAGA
Found at i:95199489 original size:28 final size:28
Alignment explanation
Indices: 95199449--95199518 Score: 131
Period size: 28 Copynumber: 2.5 Consensus size: 28
95199439 GTGTAGAGTT
*
95199449 CGCACACATAGTGCTTAATACTCAATCA
1 CGCACACTTAGTGCTTAATACTCAATCA
95199477 CGCACACTTAGTGCTTAATACTCAATCA
1 CGCACACTTAGTGCTTAATACTCAATCA
95199505 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95199519 CCTGTGATTC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATACTCAATCA
Found at i:95199566 original size:29 final size:28
Alignment explanation
Indices: 95199534--95199607 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 28
95199524 GATTCAAGCC
* *
95199534 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACAC-TAGTGCCATACAGTACAAACT
* *
95199563 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACAC-TAGTGCCATACAGTACAAACT
95199592 CGCACACTCAGTGCCA
1 CGCACACT-AGTGCCA
95199608 ATCTCGTCCC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 1 0.03
29 38 0.97
ACGTcount: A:0.31, C:0.34, G:0.15, T:0.20
Consensus pattern (28 bp):
CGCACACTAGTGCCATACAGTACAAACT
Found at i:95201975 original size:47 final size:48
Alignment explanation
Indices: 95201862--95201980 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
95201852 AGGGCTAGTT
* * *
95201862 TAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTTGATAGTCAATG
1 TAAGACCATGTCTGGGACATGGCATCGGACTCGA-TTGGATAGCCAATG
*
95201911 TAAGACCATGTCTGGGACATGGCATC-GACTTGA-TGGATAAGCCAATG
1 TAAGACCATGTCTGGGACATGGCATCGGACTCGATTGGAT-AGCCAATG
95201958 TAAGACCATGTCTGGGACATGGC
1 TAAGACCATGTCTGGGACATGGC
95201981 GTCTGCATTA
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
46 4 0.06
47 30 0.46
48 5 0.08
49 26 0.40
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGACTCGATTGGATAGCCAATG
Found at i:95203142 original size:21 final size:20
Alignment explanation
Indices: 95203118--95203157 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
95203108 ATGTTCAAAT
*
95203118 TCCACACGGGCGTGCTGCCCA
1 TCCACACAGGCGTG-TGCCCA
95203139 TCCACACAGGCGTGTGCCC
1 TCCACACAGGCGTGTGCCC
95203158 TATTTCGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.15, C:0.42, G:0.28, T:0.15
Consensus pattern (20 bp):
TCCACACAGGCGTGTGCCCA
Found at i:95203545 original size:36 final size:36
Alignment explanation
Indices: 95203498--95203566 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
95203488 ATATCAAATG
* * *
95203498 TGTGCCCAGCACTAGTCGGATAAATCGACAATGTTT
1 TGTGCACAGCACTAGTCGAAGAAATCGACAATGTTT
*
95203534 TGTGCACAGCACTAGTCGAAGAAATTGACAATG
1 TGTGCACAGCACTAGTCGAAGAAATCGACAATG
95203567 AGTTGCGTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (36 bp):
TGTGCACAGCACTAGTCGAAGAAATCGACAATGTTT
Found at i:95206750 original size:40 final size:40
Alignment explanation
Indices: 95206706--95206884 Score: 195
Period size: 40 Copynumber: 4.5 Consensus size: 40
95206696 GCTCGATTGT
* *
95206706 CTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGATT-TAGTAACTCGCACAAATGC
95206746 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
95206786 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
* * * * *
95206826 CTTC-GGA-ATTGACCCGGATTTAGTCATTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGGATTTAGTAACTCGCACAAATGC
*
95206865 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACATAGCCCGGAT
95206885 ACCATTCGAA
Statistics
Matches: 116, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 82 0.71
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:95206870 original size:79 final size:80
Alignment explanation
Indices: 95206706--95206882 Score: 241
Period size: 79 Copynumber: 2.2 Consensus size: 80
95206696 GCTCGATTGT
* * *
95206706 CTTCGGGACATAGCCCGGTTATAGTAATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGT
* *
95206771 AACTCGCACAAATGC
66 AACTAGCACAAAAGC
* * *
95206786 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTC-GGAATT-GACCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAG-CCCGGATTTAG
* *
95206849 TCATTAGCACAAAAGC
65 TAACTAGCACAAAAGC
95206865 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
95206883 ATACCATTCG
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
78 1 0.01
79 46 0.54
80 38 0.45
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGT
AACTAGCACAAAAGC
Found at i:95214052 original size:40 final size:40
Alignment explanation
Indices: 95214008--95214187 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
95213998 GCTCGATTGT
* *
95214008 CTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGATT-TAGTAACTCGCACAAATGC
95214048 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
95214088 CTTC-GGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
95214127 CTTCGGGA-ATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGGATTTAGTAAC-TCGCACAAATGC
*
95214168 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACATAGCCCGGAT
95214188 ACCATTCGAA
Statistics
Matches: 117, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
39 36 0.31
40 52 0.44
41 27 0.23
42 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:95214128 original size:79 final size:81
Alignment explanation
Indices: 95214008--95214185 Score: 236
Period size: 79 Copynumber: 2.2 Consensus size: 81
95213998 GCTCGATTGT
* * * *
95214008 CTTCGGGACATAGCCCGGTTATAGTAATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* *
95214072 TAAC-TCGCACAAATGC
65 TAACTTAGCACAAAAGC
* *
95214088 CTTC-GGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
95214152 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
*
95214168 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAACCCGG
95214186 ATACCATTCG
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 54 0.64
80 19 0.22
81 12 0.14
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:95218383 original size:26 final size:26
Alignment explanation
Indices: 95218311--95218373 Score: 117
Period size: 26 Copynumber: 2.4 Consensus size: 26
95218301 TATGACTATT
95218311 ATACCCCTATGAGGTAAATGACGAAA
1 ATACCCCTATGAGGTAAATGACGAAA
*
95218337 ATACCCCTATAAGGTAAATGACGAAA
1 ATACCCCTATGAGGTAAATGACGAAA
95218363 ATACCCCTATG
1 ATACCCCTATG
95218374 TGATATATGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.21
Consensus pattern (26 bp):
ATACCCCTATGAGGTAAATGACGAAA
Found at i:95218702 original size:34 final size:34
Alignment explanation
Indices: 95218655--95218743 Score: 108
Period size: 34 Copynumber: 2.6 Consensus size: 34
95218645 TGGATACCGT
* * **
95218655 ACTGAAATCGGCTAAGGCCCACACTGATATTGTT
1 ACTGATATGGGCTAAGGCCCACACTGATATTGCG
*
95218689 ACTG-TATTGGGCTAAGGCCCACATTGATATTGCG
1 ACTGATA-TGGGCTAAGGCCCACACTGATATTGCG
*
95218723 ACTGATATGGGCTTAGGCCCA
1 ACTGATATGGGCTAAGGCCCA
95218744 AACTATTCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
33 1 0.02
34 44 0.94
35 2 0.04
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (34 bp):
ACTGATATGGGCTAAGGCCCACACTGATATTGCG
Found at i:95223491 original size:18 final size:20
Alignment explanation
Indices: 95223454--95223491 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
95223444 TTTATTCGAT
95223454 ATAGTTTCATGCCTATCTCAC
1 ATAGTTTCA-GCCTATCTCAC
95223475 ATAGTTTCA-CC-ATCTCA
1 ATAGTTTCAGCCTATCTCA
95223492 ATGGAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
21 9 0.53
ACGTcount: A:0.26, C:0.29, G:0.08, T:0.37
Consensus pattern (20 bp):
ATAGTTTCAGCCTATCTCAC
Found at i:95226334 original size:40 final size:40
Alignment explanation
Indices: 95226273--95226474 Score: 214
Period size: 40 Copynumber: 5.0 Consensus size: 40
95226263 CTAACGGGGT
* * *
95226273 TAAGTCCCGAAGACATGTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGC
* * * *
95226313 TAAGACCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGC
* * *
95226353 TAAGTCCTGAAGGCATTGGTG-TGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCT-AGTGACTAATTCCGGGC
*
95226393 TAAGTCCCGAAGGCATTTGTGCGAGTTG-CT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAG-TGACTAAT-TCCGGGC
* * *
95226433 TAAGACCCGAAGGCATTTATGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGC
95226473 TA
1 TA
95226475 CCCGAAGGCC
Statistics
Matches: 137, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
39 4 0.03
40 132 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGC
Found at i:95226470 original size:80 final size:79
Alignment explanation
Indices: 95226303--95226519 Score: 225
Period size: 80 Copynumber: 2.8 Consensus size: 79
95226293 GCTAGTGATT
* * * *
95226303 AATTCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTAC-AAATTCCGGGCTAAGTCCTGAAGGC
1 AATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTGCTATA-TCCGGGCTAAGACCCGAAGGC
* * *
95226367 ATTGGTGTGAGTTACT
64 ATTGATGTGAGTGACC
95226383 AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCA
1 AATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCA
*
95226448 TTTATGCT-AGTGACC
65 TTGATG-TGAGTGACC
* * *
95226463 -ATATCCGGGCT-A-CCCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 AAT-TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGA-CCCGAAG
95226520 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
74 1 0.01
75 13 0.11
76 18 0.15
77 9 0.07
79 3 0.02
80 74 0.61
81 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
AATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCAT
TGATGTGAGTGACC
Found at i:95234582 original size:40 final size:40
Alignment explanation
Indices: 95234521--95234746 Score: 244
Period size: 40 Copynumber: 5.7 Consensus size: 40
95234511 CTAACGGGGT
* * * *
95234521 TAAGTCCCGAAGACATGTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* * *
95234561 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
95234601 TAAGTCCCGAAGGCATTGGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
95234641 TAAGTCCCGAAGGCATTTGTGCGAGTTG-CT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAG-TGACTAAT-TCCGGGC
* * * *
95234681 TAAGACCCGAAGGCATTTATGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGC
* ** *
95234721 TAAGACCTAAAGGC-CTTGTGCGAGTG
1 TAAGTCCCGAAGGCATTTGTGCGAGTG
95234747 GTTATATCCA
Statistics
Matches: 162, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 13 0.08
40 148 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
Found at i:95240372 original size:20 final size:20
Alignment explanation
Indices: 95240343--95240387 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
95240333 AGCACATGTA
* *
95240343 TTCATAAAATTTTATAATTT
1 TTCATAAAATTTTACAACTT
*
95240363 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
95240383 TTCAT
1 TTCAT
95240388 TTTATTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.00, T:0.51
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:95248983 original size:28 final size:27
Alignment explanation
Indices: 95248920--95248989 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
95248910 ATAGTGAGTC
95248920 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
95248947 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
95248975 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
95248990 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:95258442 original size:40 final size:40
Alignment explanation
Indices: 95258315--95258444 Score: 129
Period size: 40 Copynumber: 3.2 Consensus size: 40
95258305 ATGCTGGAAA
* * * *
95258315 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
95258355 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
* *
95258395 TTCTATCCGGGCTAAGACCCAAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
95258435 TTATATCCGG
1 TTATATCCGG
95258445 TTATATTCCG
Statistics
Matches: 70, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
39 2 0.03
40 68 0.97
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:95259971 original size:28 final size:27
Alignment explanation
Indices: 95259908--95259977 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
95259898 ATAGTGAGTC
95259908 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
95259935 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
95259963 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
95259978 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:95270678 original size:27 final size:28
Alignment explanation
Indices: 95270622--95270691 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
95270612 AAATTTGTAC
95270622 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
95270650 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
95270677 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
95270692 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:95270702 original size:27 final size:27
Alignment explanation
Indices: 95270622--95270703 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
95270612 AAATTTGTAC
* *
95270622 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
95270650 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
95270677 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
95270704 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:95285497 original size:44 final size:43
Alignment explanation
Indices: 95285388--95285626 Score: 220
Period size: 44 Copynumber: 5.5 Consensus size: 43
95285378 ATTCATAAGC
* * *
95285388 CTTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA-AGAT
* *
95285433 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAA-GAT
* * * * * * *
95285477 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* *
95285519 CTTATCTCCCTAAGCAGTA-GGAAACAGATCGAAGATGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
*
95285561 CTTAACCCCCTAAACAGTAGGGAAACAGATC-AAG--GAAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
*
95285601 GGGCCTTAACCCTCTAAGCAGTAGGG
1 ----CTTAACCCCCTAAGCAGTAGGG
95285627 TAATAGCCTG
Statistics
Matches: 158, Mismatches: 28, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
40 6 0.04
41 12 0.08
42 41 0.26
43 14 0.09
44 52 0.33
45 32 0.20
46 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
Found at i:95285539 original size:42 final size:43
Alignment explanation
Indices: 95285388--95285589 Score: 210
Period size: 42 Copynumber: 4.7 Consensus size: 43
95285378 ATTCATAAGC
* * * *
95285388 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACCGAAGA-TGA-AGAT
* * *
95285433 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACCGAAGATGAA-GAT
* * * * * *
95285477 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACCGAAGATGAAGAT
* * *
95285519 CTTATCTCCCTAAGCAGTA-GGAAACAGATCGAAGATGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGACCGAAGATGAAGAT
*
95285561 CTTAACCCCCTAAACAGTAGGGAAACAGA
1 CTTAACCCCCTAAGCAGTAGGGAAACAGA
95285590 TCAAGGAAGA
Statistics
Matches: 126, Mismatches: 28, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
41 12 0.10
42 38 0.30
43 12 0.10
44 32 0.25
45 32 0.25
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGAAACAGACCGAAGATGAAGAT
Found at i:95287091 original size:47 final size:47
Alignment explanation
Indices: 95286934--95287066 Score: 248
Period size: 47 Copynumber: 2.8 Consensus size: 47
95286924 CCGGGATAAG
* *
95286934 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
95286981 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
95287028 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACA
1 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACA
95287067 GTAGTCGACA
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 84 1.00
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.25
Consensus pattern (47 bp):
CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
Found at i:95288461 original size:86 final size:87
Alignment explanation
Indices: 95288313--95288496 Score: 255
Period size: 86 Copynumber: 2.1 Consensus size: 87
95288303 GTTCATTACA
*
95288313 TAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA
1 TAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTACTGGAGCAGATCGA
95288378 AGA-CGA-AGAACCTTAAACCCC
66 AGATCGACA-AACCTTAAACCCC
* *** * *
95288399 TAAGCAGTAGGGCAACAGGTTAAATTGCAGATCTTATCTCCCTGAGCAGTACTGGAGTAGATCGA
1 TAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTACTGGAGCAGATCGA
* *
95288464 AGATTGACAAACCTTAACCCCC
66 AGATCGACAAACCTTAAACCCC
*
95288486 TAAACAGTAGG
1 TAAGCAGTAGG
95288497 ATAACTAGTT
Statistics
Matches: 86, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
86 61 0.71
87 24 0.28
88 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.20
Consensus pattern (87 bp):
TAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTACTGGAGCAGATCGA
AGATCGACAAACCTTAAACCCC
Found at i:95289109 original size:31 final size:31
Alignment explanation
Indices: 95289071--95289140 Score: 140
Period size: 31 Copynumber: 2.3 Consensus size: 31
95289061 CTCCCCACCC
95289071 CTCCACCACCGACGCCTGCAAGTGGCCTCTG
1 CTCCACCACCGACGCCTGCAAGTGGCCTCTG
95289102 CTCCACCACCGACGCCTGCAAGTGGCCTCTG
1 CTCCACCACCGACGCCTGCAAGTGGCCTCTG
95289133 CTCCACCA
1 CTCCACCA
95289141 TCCATTTTCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.17, C:0.47, G:0.20, T:0.16
Consensus pattern (31 bp):
CTCCACCACCGACGCCTGCAAGTGGCCTCTG
Found at i:95290059 original size:3 final size:3
Alignment explanation
Indices: 95290051--95290217 Score: 108
Period size: 3 Copynumber: 56.3 Consensus size: 3
95290041 TCCCATTTCT
* * * * * *
95290051 TTA TTA TTA CTA TTA TCA TTA TTA TTTG TTGC TTA ATA -TA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TT-A TTA TTA TTA TTA TTA
** * *
95290097 TTA TTA TT- TTA TCC TCA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
95290144 TTA TTA TTA TTA TTA TTA CTA TTA TT- TGA -TA CTA TCA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * ** *
95290190 TTA TTC TAA TTA CCA TTA TTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
95290218 ATATATACAT
Statistics
Matches: 125, Mismatches: 33, Indels: 12
0.74 0.19 0.07
Matches are distributed among these distances:
2 6 0.05
3 115 0.92
4 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:95290303 original size:87 final size:87
Alignment explanation
Indices: 95290212--95290391 Score: 351
Period size: 87 Copynumber: 2.1 Consensus size: 87
95290202 CCATTATTAC
*
95290212 TATTATATATATACATACCTTTTATTATTATTCATGTACATATATTTTAAATATTATTACCATTA
1 TATTATATATATACATACCTTTTACTATTATTCATGTACATATATTTTAAATATTATTACCATTA
95290277 TTATTTTTATCACTTACATGGT
66 TTATTTTTATCACTTACATGGT
95290299 TATTATATATATACATACCTTTTACTATTATTCATGTACATATATTTTAAATATTATTACCATTA
1 TATTATATATATACATACCTTTTACTATTATTCATGTACATATATTTTAAATATTATTACCATTA
95290364 TTATTTTTATCACTTACATGGT
66 TTATTTTTATCACTTACATGGT
95290386 TATTAT
1 TATTAT
95290392 TATTCTATTA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 92 1.00
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.52
Consensus pattern (87 bp):
TATTATATATATACATACCTTTTACTATTATTCATGTACATATATTTTAAATATTATTACCATTA
TTATTTTTATCACTTACATGGT
Found at i:95298799 original size:12 final size:13
Alignment explanation
Indices: 95298775--95298805 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
95298765 TGACACATGT
95298775 CCGTGTCCCTAGC
1 CCGTGTCCCTAGC
95298788 CCGTGT-CCTAGC
1 CCGTGTCCCTAGC
95298800 CCGTGT
1 CCGTGT
95298806 GCAAAAACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.06, C:0.42, G:0.26, T:0.26
Consensus pattern (13 bp):
CCGTGTCCCTAGC
Found at i:95299835 original size:46 final size:47
Alignment explanation
Indices: 95299782--95299907 Score: 166
Period size: 46 Copynumber: 2.7 Consensus size: 47
95299772 GTAGCCGATA
* *
95299782 CATGTCCCAGACATGTCTTAGACTAGCTTACATCTTAAGGCCAATG-
1 CATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAGGCCAATGC
* * * *
95299828 CATGTCCCATACATGTCTTACACTAGCTCT-CGTCTCAATGCCGATGC
1 CATGTCCCAGACATGTCTTACACTAGCT-TACATCTCAAGGCCAATGC
95299875 CATGTCCCAGACATGGTCTTACACTAGCTTACA
1 CATGTCCCAGACAT-GTCTTACACTAGCTTACA
95299908 ATAACCCATA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 38 0.56
47 15 0.22
48 15 0.22
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAGGCCAATGC
Found at i:95306061 original size:22 final size:22
Alignment explanation
Indices: 95306020--95306082 Score: 101
Period size: 22 Copynumber: 2.9 Consensus size: 22
95306010 TACTAGACAT
* *
95306020 AGGGGC-ACATGCGCATGTGGG
1 AGGGGCAACACGCCCATGTGGG
95306041 AGGGGCAACACGCCCATGTGGG
1 AGGGGCAACACGCCCATGTGGG
95306063 AGGGGCAACACGCCCATGTG
1 AGGGGCAACACGCCCATGTG
95306083 ACCGATTCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
21 6 0.15
22 33 0.85
ACGTcount: A:0.22, C:0.25, G:0.41, T:0.11
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGTGGG
Done.