Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 314 of 770
Found at i:95964058 original size:19 final size:19
Alignment explanation
Indices: 95964036--95964074 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
95964026 TTTAATTATT
* *
95964036 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
95964055 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
95964074 T
1 T
95964075 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:95969812 original size:15 final size:15
Alignment explanation
Indices: 95969792--95969822 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
95969782 AAATATTAAA
95969792 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
95969807 GATATGTTTTGTATT
1 GATATGTTTTGGATT
95969822 G
1 G
95969823 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:95970768 original size:19 final size:18
Alignment explanation
Indices: 95970744--95970787 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
95970734 GATACAAATT
95970744 ATATATGATGCAAATGAAA
1 ATATATG-TGCAAATGAAA
* *
95970763 ATATATGTGTATATGAAA
1 ATATATGTGCAAATGAAA
95970781 AGTATAT
1 A-TATAT
95970788 TCGGCAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.48, C:0.02, G:0.16, T:0.34
Consensus pattern (18 bp):
ATATATGTGCAAATGAAA
Found at i:95985571 original size:28 final size:28
Alignment explanation
Indices: 95985539--95985599 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
95985529 ACGGGTGACG
* *
95985539 CACGGATGTGTCTAGACCGTGTAAATGA
1 CACGGACGTGTCTAGACCATGTAAATGA
*
95985567 CACGGACGTGTCTAGACCATGTAAATGT
1 CACGGACGTGTCTAGACCATGTAAATGA
95985595 CACGG
1 CACGG
95985600 GCTAGGGACA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (28 bp):
CACGGACGTGTCTAGACCATGTAAATGA
Found at i:95994551 original size:19 final size:19
Alignment explanation
Indices: 95994527--95994567 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
95994517 ATGATTAATG
95994527 TATGATTAATGCTGCTTAT
1 TATGATTAATGCTGCTTAT
*
95994546 TATGATTAATGTTGCTTAT
1 TATGATTAATGCTGCTTAT
95994565 TAT
1 TAT
95994568 TTGCATGCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.27, C:0.07, G:0.15, T:0.51
Consensus pattern (19 bp):
TATGATTAATGCTGCTTAT
Found at i:95999013 original size:40 final size:40
Alignment explanation
Indices: 95998855--95999015 Score: 178
Period size: 40 Copynumber: 4.0 Consensus size: 40
95998845 CGGAATTTAA
* * * **
95998855 CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * * *
95998895 CCGGTTATAGTGACTCGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
* ** *
95998935 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
* *
95998975 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
95999015 C
1 C
95999016 TGGAGCACAA
Statistics
Matches: 100, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 100 1.00
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:96001687 original size:18 final size:18
Alignment explanation
Indices: 96001659--96001695 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
96001649 TAGTTGACAA
96001659 AGCTTGCAAAGA-AAAAG
1 AGCTTGCAAAGAGAAAAG
96001676 AGCTTAGCAAAGAGAAAAG
1 AGCTT-GCAAAGAGAAAAG
96001695 A
1 A
96001696 AAGTTGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 7 0.39
19 6 0.33
ACGTcount: A:0.54, C:0.11, G:0.24, T:0.11
Consensus pattern (18 bp):
AGCTTGCAAAGAGAAAAG
Found at i:96004532 original size:30 final size:30
Alignment explanation
Indices: 96004498--96004558 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
96004488 TCCTTAACTC
96004498 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
96004528 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
96004558 A
1 A
96004559 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:96016258 original size:6 final size:6
Alignment explanation
Indices: 96016249--96016307 Score: 75
Period size: 6 Copynumber: 9.7 Consensus size: 6
96016239 AAGAAAGATT
*
96016249 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
96016298 ATCAAA ATCA
1 ATCAGA ATCA
96016308 AAATGGGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
5 2 0.04
6 41 0.87
7 3 0.06
8 1 0.02
ACGTcount: A:0.49, C:0.17, G:0.15, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:96016743 original size:27 final size:27
Alignment explanation
Indices: 96016713--96016881 Score: 214
Period size: 27 Copynumber: 6.3 Consensus size: 27
96016703 GGGGCAAAAT
* * * *
96016713 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
96016740 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
96016767 AGTAATTCTACCCTACAGGGGTATTT-
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
96016793 GATAATTCTAACCATACAGGGGTATTTC
1 GGTAATTCT-ACCCTACAGGGGTATTTC
*
96016821 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
96016848 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
96016875 GGTAATT
1 GGTAATT
96016882 TCACAAATTA
Statistics
Matches: 122, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.06
27 107 0.88
28 8 0.07
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:96016897 original size:54 final size:53
Alignment explanation
Indices: 96016731--96016900 Score: 159
Period size: 54 Copynumber: 3.2 Consensus size: 53
96016721 TACCCCACAA
* * * * * *
96016731 GGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAA-TTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAATTTC-ACAC-ATAG
* * *
96016785 GGGTATTT-GATAATTCTAACCATACAGGGGTATTTCGGTAATTCTACCCTACA-A-
1 GGGTATTTCGATAATTCT-ACCCTACAGGGGTATTTTGGTAATT-T-CAC-ACATAG
*
96016839 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAATTTCACAAATTAG
1 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAATTTCACACA-TAG
96016893 GGGTATTT
1 GGGTATTT
96016901 TGGTAAATTT
Statistics
Matches: 95, Mismatches: 12, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
51 2 0.02
52 2 0.02
53 9 0.09
54 66 0.69
55 11 0.12
56 3 0.03
57 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (53 bp):
GGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAATTTCACACATAG
Found at i:96016935 original size:81 final size:80
Alignment explanation
Indices: 96016754--96016935 Score: 190
Period size: 81 Copynumber: 2.2 Consensus size: 80
96016744 ATTCCACCCT
* *
96016754 ACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTGATAATTCTAACCATACAGGGGTATT
1 ACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTGATAATTCTAACAATACAGGGGTATT
* **
96016819 TCGGTAATTCTACCC
66 TCGGTAATTATAAAC
* * * * * *
96016834 TACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAATT-TCACAA-ATTAGGGGT
1 -ACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTA-TTTGATAATTCTAACAATA-CAGGGGT
*
96016897 ATTTTGGTAAATTTATAAAC
63 ATTTCGGT-AA-TTATAAAC
96016917 -CAGGGGTATTTTGGTAATT
1 ACAGGGGTATTTTGGTAATT
96016936 TTGTAAACCA
Statistics
Matches: 82, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
80 1 0.01
81 65 0.79
82 11 0.13
83 5 0.06
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (80 bp):
ACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTGATAATTCTAACAATACAGGGGTATT
TCGGTAATTATAAAC
Found at i:96016942 original size:27 final size:27
Alignment explanation
Indices: 96016863--96016969 Score: 115
Period size: 27 Copynumber: 4.0 Consensus size: 27
96016853 TTCTACCCTA
* * *
96016863 CAGGGGTATTTTGGTAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTATAAAC
* *
96016890 TAGGGGTATTTTGGTAAATTTATAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
*
96016917 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
** ** *
96016944 CAATGGTATTTCAGTAATTTTGTAAA
1 CAGGGGTATTTTGGTAATTTTATAAA
96016970 TCGAGGGTCA
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTATAAAC
Found at i:96016987 original size:27 final size:27
Alignment explanation
Indices: 96016957--96017045 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
96016947 TGGTATTTCA
* *
96016957 GTAATTTTGTAAATCGAGGGTCAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
96016984 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
96017011 ATAATTCTATAAATCGAGAGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
96017038 GTAATTCT
1 GTAATTCT
96017046 ATCTTTTTCG
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:96017130 original size:27 final size:26
Alignment explanation
Indices: 96017055--96017134 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 26
96017045 TATCTTTTTC
*
96017055 GGTAATTTTACAAATCGAGGATATTTG
1 GGTAATTTTAC-AATCGAGGGTATTTG
* *
96017082 GGTAATTTTATTAATCGGGGGTACTTT-
1 GGTAATTTTA-CAATCGAGGGTA-TTTG
96017109 GGTAATTTTACAAGTCGAGGGTATTT
1 GGTAATTTTACAA-TCGAGGGTATTT
96017135 CAATAATTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
26 5 0.11
27 37 0.82
28 3 0.07
ACGTcount: A:0.28, C:0.07, G:0.25, T:0.40
Consensus pattern (26 bp):
GGTAATTTTACAATCGAGGGTATTTG
Found at i:96018436 original size:28 final size:29
Alignment explanation
Indices: 96018389--96018460 Score: 71
Period size: 28 Copynumber: 2.6 Consensus size: 29
96018379 CCTACTCTAG
* *
96018389 TATT-TTTCCTCATTTC-TTTTC-ACTTTT
1 TATTCTTTCCT-ACTTCTTTTTCTACATTT
*
96018416 TATTCTTTCCTACTTCTTTTTCTCCATTT
1 TATTCTTTCCTACTTCTTTTTCTACATTT
*
96018445 T-TTCTTTCCTCCTTCT
1 TATTCTTTCCTACTTCT
96018461 CCATTTCCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
27 8 0.21
28 25 0.66
29 5 0.13
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (29 bp):
TATTCTTTCCTACTTCTTTTTCTACATTT
Found at i:96026110 original size:25 final size:25
Alignment explanation
Indices: 96026082--96026129 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
96026072 TTATACTATG
* * *
96026082 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
96026107 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
96026130 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:96026197 original size:19 final size:19
Alignment explanation
Indices: 96026173--96026234 Score: 99
Period size: 19 Copynumber: 3.3 Consensus size: 19
96026163 TAAATATGGT
*
96026173 ATGTATGAGATGCACATGA
1 ATGTATGATATGCACATGA
96026192 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
96026211 TATGTATGATATGCACATG-
1 -ATGTATGATATGCACATGA
96026230 ATGTA
1 ATGTA
96026235 ATCATAACTG
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
18 5 0.12
19 18 0.44
20 18 0.44
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.32
Consensus pattern (19 bp):
ATGTATGATATGCACATGA
Found at i:96026217 original size:20 final size:20
Alignment explanation
Indices: 96026172--96026231 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
96026162 ATAAATATGG
*
96026172 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
96026192 -ATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
96026211 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
96026231 T
1 T
96026232 GTAATCATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 18 0.47
20 20 0.53
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:96026396 original size:25 final size:24
Alignment explanation
Indices: 96026281--96026400 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
96026271 GAGGAAGTGA
96026281 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
96026305 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
96026329 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
96026353 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
96026377 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
96026401 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
24 77 0.88
25 11 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:96026626 original size:31 final size:31
Alignment explanation
Indices: 96026591--96026654 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
96026581 CGTTTACAGT
96026591 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
96026622 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
96026653 AA
1 AA
96026655 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:96036241 original size:27 final size:28
Alignment explanation
Indices: 96036184--96036253 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
96036174 AAATTTGTAC
**
96036184 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
96036212 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
96036239 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
96036254 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:96036262 original size:27 final size:27
Alignment explanation
Indices: 96036184--96036265 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
96036174 AAATTTGTAC
* *
96036184 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
96036212 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
96036239 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
96036266 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:96044166 original size:27 final size:28
Alignment explanation
Indices: 96044109--96044178 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
96044099 AAATTTGTAC
**
96044109 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
96044137 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
96044164 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
96044179 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:96044187 original size:27 final size:27
Alignment explanation
Indices: 96044109--96044190 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
96044099 AAATTTGTAC
* *
96044109 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
96044137 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
96044164 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
96044191 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:96048563 original size:49 final size:50
Alignment explanation
Indices: 96048380--96048577 Score: 184
Period size: 50 Copynumber: 4.0 Consensus size: 50
96048370 TGATCTATTG
* * * * * * **
96048380 TGAGGTCGCATGTGTAGTACTAAGTGAAGGCTAATATGCGTACCCGAAAA
1 TGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGA
* * * ** *
96048430 CTGTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGG
1 -TGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGA
*
96048481 TGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-A
1 TGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGA
* * * * *
96048531 T-TGGTCGCATGTGTACTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
96048578 AGCTTCGGCT
Statistics
Matches: 121, Mismatches: 25, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
48 1 0.01
49 39 0.32
50 44 0.36
51 37 0.31
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (50 bp):
TGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGA
Found at i:96051591 original size:15 final size:15
Alignment explanation
Indices: 96051571--96051626 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
96051561 GTATCTTGGG
96051571 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
96051586 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
96051601 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
96051616 TTTCTTTATTC
1 TTTCTTTATTC
96051627 AGTTTTCTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
14 4 0.11
15 27 0.77
16 4 0.11
ACGTcount: A:0.11, C:0.14, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:96056605 original size:50 final size:49
Alignment explanation
Indices: 96056484--96056670 Score: 225
Period size: 50 Copynumber: 3.8 Consensus size: 49
96056474 TGAGGTCGCA
* * * *
96056484 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
**
96056535 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
96056585 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
*
96056634 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
96056671 TAGCTTCGGC
Statistics
Matches: 120, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 41 0.34
50 43 0.36
51 31 0.26
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:96070814 original size:40 final size:40
Alignment explanation
Indices: 96070769--96071052 Score: 394
Period size: 40 Copynumber: 7.1 Consensus size: 40
96070759 CGAGATTTAA
* * *
96070769 CCGGATATAGCT-CCTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
96070809 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
96070849 CCAGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
96070889 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
96070929 CCGGATATAGTAACTCACACAATTGCCTTTGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
96070969 CCGGATACAGTAACTCGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
96071009 CCGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGC
96071050 CCG
1 CCG
96071053 ATTATCATCC
Statistics
Matches: 224, Mismatches: 16, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
39 2 0.01
40 196 0.88
41 22 0.10
42 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:96073588 original size:30 final size:29
Alignment explanation
Indices: 96073494--96073595 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
96073484 TATAGTGAAT
* * *
96073494 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
96073523 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
96073551 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
96073581 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
96073596 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:96081117 original size:30 final size:29
Alignment explanation
Indices: 96081023--96081124 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
96081013 TATAGTGAAT
* * *
96081023 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
96081052 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
96081080 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
96081110 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
96081125 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:96089220 original size:40 final size:40
Alignment explanation
Indices: 96089158--96089416 Score: 355
Period size: 40 Copynumber: 6.5 Consensus size: 40
96089148 AGGCCAAGTA
* * *
96089158 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
96089197 CCTTCGGGACATAGCCCGGATATAGTAACTCACACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
96089237 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
96089277 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
96089317 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
96089357 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
96089398 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
96089417 TTATCATCCA
Statistics
Matches: 200, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
39 13 0.06
40 161 0.81
41 23 0.12
42 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:96092713 original size:2 final size:2
Alignment explanation
Indices: 96092706--96092737 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
96092696 CTAGTCTTAT
96092706 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
96092738 CATGTCATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:96094766 original size:30 final size:30
Alignment explanation
Indices: 96094732--96094792 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
96094722 TCCTTAACTC
96094732 AAACTTTGGCAAAATTAAAATTTTGCCCCT
1 AAACTTTGGCAAAATTAAAATTTTGCCCCT
* * * * *
96094762 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTAAAATTTTGCCCCT
96094792 A
1 A
96094793 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTAAAATTTTGCCCCT
Found at i:96097611 original size:50 final size:50
Alignment explanation
Indices: 96097494--96097770 Score: 222
Period size: 50 Copynumber: 5.5 Consensus size: 50
96097484 CTGGTATGCA
* * * * * * *
96097494 TAGTAGCTTGCACTTAGTACTACACATGCGACC-AACAATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
*
96097543 TAGTAGCCTGGACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
* * *** * *
96097593 TAATAGCCTGCACTTAGTAC-ACACACGTGA-TTGAAGTTGTCGGGCATGCA--
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CCATC-TG-ATACACG
* * * * *
96097643 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
* * * * *
96097693 TAGTAGCCTACACTTAGTACTACACACGTGACCTAAAACCATTTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATCTGATACACG
* *
96097745 TAGTAGCCTGTACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
96097771 TGTGTTCTAA
Statistics
Matches: 179, Mismatches: 38, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
48 4 0.02
49 42 0.23
50 85 0.47
51 11 0.06
52 37 0.21
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
Found at i:96097660 original size:100 final size:101
Alignment explanation
Indices: 96097543--96097723 Score: 283
Period size: 100 Copynumber: 1.8 Consensus size: 101
96097533 CCGGTACATG
* * *
96097543 TAGTAGCCTGGACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAATAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACGTAATAGCCTACACTT
96097608 AGTAC-ACACACGTGATTGAAGTTGTCGGGCATGCA
66 AGTACTACACACGTGATTGAAGTTGTCGGGCATGCA
* * * * *
96097643 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACATGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACGTAATAGCCTACACTT
96097708 AGTACTACACACGTGA
66 AGTACTACACACGTGA
96097724 CCTAAAACCA
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 62 0.86
101 10 0.14
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACGTAATAGCCTACACTT
AGTACTACACACGTGATTGAAGTTGTCGGGCATGCA
Found at i:96100865 original size:37 final size:37
Alignment explanation
Indices: 96100812--96100933 Score: 208
Period size: 37 Copynumber: 3.3 Consensus size: 37
96100802 TATAAAAGAA
* *
96100812 GTCTTACTCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
96100849 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
96100886 GTCTTACCCGGTCATAATCTCCACACATAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
96100923 GTCTCACCCGG
1 GTCTTACCCGG
96100934 AACATATTCC
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 81 1.00
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:96101090 original size:49 final size:49
Alignment explanation
Indices: 96101035--96101419 Score: 601
Period size: 49 Copynumber: 8.1 Consensus size: 49
96101025 TTTTACATTA
*
96101035 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
* *
96101084 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
*
96101133 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
*
96101182 GCCATTAGGCCTCAT--CATAT--AT--A----CACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
* *
96101221 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
*
96101270 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
* *
96101319 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
*
96101368 GCCATTAGGCCTTATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
96101417 GCC
1 GCC
96101420 TAATCACATT
Statistics
Matches: 317, Mismatches: 9, Indels: 20
0.92 0.03 0.06
Matches are distributed among these distances:
39 31 0.10
41 5 0.02
43 3 0.01
45 3 0.01
47 5 0.02
49 270 0.85
ACGTcount: A:0.30, C:0.34, G:0.09, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
Found at i:96101151 original size:98 final size:98
Alignment explanation
Indices: 96101035--96101654 Score: 629
Period size: 98 Copynumber: 6.2 Consensus size: 98
96101025 TTTTACATTA
* *
96101035 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATC
96101100 ACATATACATACACTTTCACATTCACCACATCG
66 ACATATACATACACTTTCACATTCACCACATCG
96101133 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCAT-
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATC
*
96101197 -CATAT--AT--A----CACATTCATCACATCG
66 ACATATACATACACTTTCACATTCACCACATCG
* *
96101221 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATC
96101286 ACATATACATACACTTTCACATTCACCACATCG
66 ACATATACATACACTTTCACATTCACCACATCG
* *
96101319 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATC
* *
96101384 ACATATACATCCACTTTCACATTCATCACATCG
66 ACATATACATACACTTTCACATTCACCACATCG
* * * * *
96101417 GCCTAATCA--CATTCATCACATCGGCCATTAGGCCTTATCACATAT-ACATACACTTTCACATT
1 GCC--ATTAGGC-CTCATCACAT-----A-TA---CATA-CAC-TTTCACATTCA---TCACA-T
* * * * * * * * *
96101479 C-ACCACATCGGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
48 CGGCCA-TTAGGCC-TCA--TCACAT-ATACATACA----CTTTCACATTCACCACATCG
* *
96101538 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATC
* * *
96101603 ACATATACATACACTTTCACATTCATCGCATTG
66 ACATATACATACACTTTCACATTCACCACATCG
* *
96101636 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
96101655 CATATATGTA
Statistics
Matches: 442, Mismatches: 39, Indels: 82
0.79 0.07 0.15
Matches are distributed among these distances:
88 77 0.17
90 5 0.01
92 3 0.01
94 3 0.01
96 5 0.01
98 212 0.48
99 9 0.02
100 3 0.01
102 7 0.02
103 4 0.01
104 1 0.00
105 5 0.01
106 7 0.02
107 8 0.02
108 2 0.00
109 11 0.02
110 11 0.02
111 2 0.00
112 8 0.02
113 7 0.02
114 5 0.01
115 1 0.00
116 4 0.01
117 6 0.01
119 3 0.01
120 9 0.02
121 24 0.05
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (98 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATC
ACATATACATACACTTTCACATTCACCACATCG
Found at i:96101292 original size:186 final size:186
Alignment explanation
Indices: 96101035--96101654 Score: 796
Period size: 186 Copynumber: 3.4 Consensus size: 186
96101025 TTTTACATTA
*
96101035 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
96101100 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
*
96101165 TCACATTCATCACATCGGCCATTAGGCCTCATCATATATACACATTCATCACATCG
131 TCACATTCATCACATCGGCCATTAGGCCTCATCACATATACACATTCATCACATCG
* * *
96101221 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
*
96101286 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATCCACTT
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
* *
96101351 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATCCACTT--TCACATTCA
131 TCACATTCATCACATCGGCCATTAGGCCTCATCACATATACA--CA-TTCATCACA-TCG
* * *
96101409 TCACA-TCGG-C-C-T---A-AT-C--ACA--TT--CA-T---CACATCGGCCATTAGGCCTTAT
1 GC-CATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
*
96101455 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATCCACT
65 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACT
96101520 TTCACATTCATCACATCGGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACAT
130 TTCACATTCATCACATCGGCCATTAGGCCTCATCAC--AT--AT--A----CACATTCATCACAT
96101585 CG
185 CG
* * * * * *
96101587 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTGGCCATTCGGCCTTATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
96101652 ACA
66 ACA
96101655 CATATATGTA
Statistics
Matches: 379, Mismatches: 19, Indels: 62
0.82 0.04 0.13
Matches are distributed among these distances:
170 122 0.32
172 2 0.01
173 1 0.00
174 4 0.01
176 3 0.01
177 4 0.01
178 10 0.03
179 6 0.02
180 3 0.01
181 3 0.01
182 1 0.00
184 1 0.00
185 3 0.01
186 167 0.44
187 6 0.02
188 11 0.03
189 4 0.01
190 2 0.01
192 2 0.01
193 1 0.00
196 23 0.06
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (186 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
TCACATTCATCACATCGGCCATTAGGCCTCATCACATATACACATTCATCACATCG
Found at i:96101431 original size:72 final size:72
Alignment explanation
Indices: 96101351--96101491 Score: 264
Period size: 72 Copynumber: 2.0 Consensus size: 72
96101341 ACATCCACTT
* *
96101351 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATCCACTTTCACATTCATCACATC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATC
96101416 GGCCTAA
66 GGCCTAA
96101423 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATC
96101488 GGCC
66 GGCC
96101492 ATTAGGCCTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.28
Consensus pattern (72 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATC
GGCCTAA
Found at i:96101439 original size:121 final size:121
Alignment explanation
Indices: 96101302--96101540 Score: 433
Period size: 121 Copynumber: 2.0 Consensus size: 121
96101292 ACATACACTT
* *
96101302 TCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATC
1 TCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATC
*
96101367 GGCCATTAGGCCTTATCACATATACATCCACTTTCACATTCATCACATCGGCCTAA
66 GGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCTAA
* *
96101423 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATC
1 TCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATC
96101488 GGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCC
66 GGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCC
96101541 ATTAGGCCTC
Statistics
Matches: 113, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
121 113 1.00
ACGTcount: A:0.29, C:0.35, G:0.08, T:0.28
Consensus pattern (121 bp):
TCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATC
GGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCTAA
Found at i:96101459 original size:219 final size:222
Alignment explanation
Indices: 96101197--96101640 Score: 786
Period size: 219 Copynumber: 2.0 Consensus size: 222
96101187 TAGGCCTCAT
*
96101197 CATATATACACATTCATCACATCGGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCA
1 CATATATACACATTCATCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCA
*
96101262 TCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAG
66 CCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAG
96101327 GCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
131 GCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
*
96101392 ATCCACTTTCACATTCATCACATCGGC
196 ATACACTTTCACATTCATCACATCGGC
*
96101419 C-TA-AT-CACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCA
1 CATATATACACATTCATCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCA
* * *
96101481 CCACATCGGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAG
66 CCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAG
96101546 GCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
131 GCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
* *
96101611 ATACACTTTCACATTCATCGCATTGGC
196 ATACACTTTCACATTCATCACATCGGC
96101638 CAT
1 CAT
96101641 TCGGCCTTAT
Statistics
Matches: 212, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
219 206 0.97
220 3 0.01
221 2 0.01
222 1 0.00
ACGTcount: A:0.30, C:0.33, G:0.08, T:0.29
Consensus pattern (222 bp):
CATATATACACATTCATCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCA
CCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAG
GCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
ATACACTTTCACATTCATCACATCGGC
Found at i:96101478 original size:49 final size:49
Alignment explanation
Indices: 96101423--96101654 Score: 392
Period size: 49 Copynumber: 4.7 Consensus size: 49
96101413 ATCGGCCTAA
96101423 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
* * *
96101472 TCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATCCACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
* *
96101521 TCACATTCATCACATCGGCCATTAGGCCTCATCACATATACATCCACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
96101570 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
* * *
96101619 TCACATTCATCGCATTGGCCATTCGGCCTTATCACA
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACA
96101655 CATATATGTA
Statistics
Matches: 174, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 174 1.00
ACGTcount: A:0.28, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
Found at i:96101531 original size:27 final size:27
Alignment explanation
Indices: 96101500--96101584 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
96101490 CCATTAGGCC
96101500 TCATCACATATACATCCACTTTCACAT
1 TCATCACATATACATCCACTTTCACAT
** *** *
96101527 TCATCAC--AT-CGGCCA-TTAGGC-C
1 TCATCACATATACATCCACTTTCACAT
96101549 TCATCACATATACATCCACTTTCACAT
1 TCATCACATATACATCCACTTTCACAT
96101576 TCATCACAT
1 TCATCACAT
96101585 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 12, Indels: 10
0.65 0.19 0.16
Matches are distributed among these distances:
22 7 0.17
23 3 0.07
24 6 0.15
25 6 0.15
26 3 0.07
27 16 0.39
ACGTcount: A:0.31, C:0.34, G:0.05, T:0.31
Consensus pattern (27 bp):
TCATCACATATACATCCACTTTCACAT
Found at i:96101535 original size:170 final size:170
Alignment explanation
Indices: 96101253--96101589 Score: 665
Period size: 170 Copynumber: 2.0 Consensus size: 170
96101243 ACATCCACTT
96101253 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATC
*
96101318 GGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
66 GGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
96101383 CACATATACATCCACTTTCACATTCATCACATCGGCCTAA
131 CACATATACATCCACTTTCACATTCATCACATCGGCCTAA
96101423 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATC
96101488 GGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
66 GGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
96101553 CACATATACATCCACTTTCACATTCATCACATCGGCC
131 CACATATACATCCACTTTCACATTCATCACATCGGCC
96101590 ATTAGGCCTT
Statistics
Matches: 166, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
170 166 1.00
ACGTcount: A:0.29, C:0.34, G:0.08, T:0.28
Consensus pattern (170 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATC
GGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
CACATATACATCCACTTTCACATTCATCACATCGGCCTAA
Found at i:96104894 original size:23 final size:23
Alignment explanation
Indices: 96104821--96104894 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
96104811 GGTCTTATCA
96104821 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
** * *
96104844 CACATTTGCCA--TTCGGCCTTAGCA-
1 CACAAATG-CATGTTC-ACATT--CAT
96104868 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
96104891 CACA
1 CACA
96104895 TTTGCCATTC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 15 0.42
24 11 0.31
25 5 0.14
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (23 bp):
CACAAATGCATGTTCACATTCAT
Found at i:96104913 original size:47 final size:47
Alignment explanation
Indices: 96104698--96104911 Score: 302
Period size: 47 Copynumber: 4.6 Consensus size: 47
96104688 CACATCCACG
* ****
96104698 TTCATCACATTGGCCATTCTGCCTTATCACGTGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
* * * * *
96104745 TTTATCACATTGGCCATTCGTCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
*
96104792 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
* *
96104839 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
*
96104886 TTCATCACATTTGCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
96104912 GCTCTTGTAT
Statistics
Matches: 152, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 152 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
Found at i:96108715 original size:40 final size:41
Alignment explanation
Indices: 96108666--96109142 Score: 627
Period size: 40 Copynumber: 11.9 Consensus size: 41
96108656 ATACACATCA
*
96108666 CCAGCATGAATGCTCTTCGGA-ACTTAGCCCGGATATAACT
1 CCAGCACGAATGCTCTTCGGAGACTTAGCCCGGATATAACT
* * * * *
96108706 CCAGTATGAATGCTCTTC-GAGACTTAGCCCGAATATGACA
1 CCAGCACGAATGCTCTTCGGAGACTTAGCCCGGATATAACT
* *
96108746 CCAGCACGTATGCTCTTCGG-GACTTAGCCCTGATATAACT
1 CCAGCACGAATGCTCTTCGGAGACTTAGCCCGGATATAACT
96108786 CCAGCACGAATGCTCTTC-GAGACTTAGCCCGGATATAACT
1 CCAGCACGAATGCTCTTCGGAGACTTAGCCCGGATATAACT
* * * *
96108826 CTAGCACAAATGCTCTTC-GAGACTTAGCCCGGATATGACA
1 CCAGCACGAATGCTCTTCGGAGACTTAGCCCGGATATAACT
* *
96108866 CCAGCACGTATGCTCTTCGG-GACTTAGCCCTGATATAACT
1 CCAGCACGAATGCTCTTCGGAGACTTAGCCCGGATATAACT
*
96108906 CCAGCACGAATGCTCTT-TGAGACTTAGCCCGGATATAACT
1 CCAGCACGAATGCTCTTCGGAGACTTAGCCCGGATATAACT
*
96108946 CTAGCACGAATGCTCTTC-GAGACTTAGCCCGGATATAACT
1 CCAGCACGAATGCTCTTCGGAGACTTAGCCCGGATATAACT
* * *
96108986 CTAGCACGAATGCTCTTC-GAGACTTAGCCCGGATATGACA
1 CCAGCACGAATGCTCTTCGGAGACTTAGCCCGGATATAACT
* * * *
96109026 CCAGCACGTATGCTCTTCGG-GACTTAACCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGAGACTTAGCCCGGATATAACT
* * *
96109066 CTAGCGCGAATGCTCTTCGGA-ACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGAGACTTAGCCCGGATATAACT
*
96109106 CCAGCACGTATGCTCTTCGG-GACTTAGCCCGGATATA
1 CCAGCACGAATGCTCTTCGGAGACTTAGCCCGGATATA
96109143 TCATACTGAA
Statistics
Matches: 386, Mismatches: 42, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
39 4 0.01
40 379 0.98
41 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (41 bp):
CCAGCACGAATGCTCTTCGGAGACTTAGCCCGGATATAACT
Found at i:96108879 original size:120 final size:120
Alignment explanation
Indices: 96108666--96109142 Score: 715
Period size: 120 Copynumber: 4.0 Consensus size: 120
96108656 ATACACATCA
* * * *
96108666 CCAGCATGAATGCTCTTCG-GAACTTAGCCCGGATATAACTCCAGTATGAATGCTCTTCGAGACT
1 CCAGCACGAATGCTCTTCGAG-ACTTAGCCCGGATATAACTCTAGCACGAATGCTCTTCGAGACT
* * *
96108730 TAGCCCGAATATGACACCAGCACGTATGCTCTTCGGGACTTAGCCCTGATATAACT
65 TAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAACT
*
96108786 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACAAATGCTCTTCGAGACTT
1 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAATGCTCTTCGAGACTT
* *
96108851 AGCCCGGATATGACACCAGCACGTATGCTCTTCGGGACTTAGCCCTGATATAACT
66 AGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAACT
*
96108906 CCAGCACGAATGCTCTTTGAGACTTAGCCCGGATATAACTCTAGCACGAATGCTCTTCGAGACTT
1 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAATGCTCTTCGAGACTT
* * * * * *
96108971 AGCCCGGATATAACTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATGACA
66 AGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAACT
* * * * * *
96109026 CCAGCACGTATGCTCTTCGGGACTTAACCCGGATATATCACTAGCGCGAATGCTCTTCG-GAACT
1 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAATGCTCTTCGAG-ACT
96109090 TAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATA
65 TAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATA
96109143 TCATACTGAA
Statistics
Matches: 327, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
119 1 0.00
120 325 0.99
121 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAATGCTCTTCGAGACTT
AGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAACT
Found at i:96110722 original size:22 final size:22
Alignment explanation
Indices: 96110694--96110769 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
96110684 ATCCACGTTC
96110694 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
96110716 ATCACATGTATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
96110741 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
96110763 ATCACAT
1 ATCACAT
96110770 ATATACATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 7 0.17
25 10 0.24
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:96110747 original size:47 final size:47
Alignment explanation
Indices: 96110691--96110953 Score: 391
Period size: 47 Copynumber: 5.6 Consensus size: 47
96110681 CACATCCACG
* * ***
96110691 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
* * * * *
96110738 TTTATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
* *
96110785 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
*
96110832 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
*
96110879 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
*
96110926 TTCATCACATTTGCCATTCGGCCTTAGC
1 TTCATCACATTGGCCATTCGGCCTTAGC
96110954 TCATGTATAC
Statistics
Matches: 204, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 204 1.00
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
Found at i:96110911 original size:24 final size:24
Alignment explanation
Indices: 96110837--96110911 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
96110827 TCACATTCAT
96110837 CACATTTGCCATTCGGCCTTAGCA
1 CACATTTGCCATTCGGCCTTAGCA
** * *
96110861 CACAAATG-CATGTTC-ACATT--CA
1 CACATTTGCCA--TTCGGCCTTAGCA
96110883 TCACATTTGCCATTCGGCCTTAGCA
1 -CACATTTGCCATTCGGCCTTAGCA
96110908 CACA
1 CACA
96110912 AATGCATGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 11 0.31
24 15 0.42
25 5 0.14
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (24 bp):
CACATTTGCCATTCGGCCTTAGCA
Found at i:96110971 original size:141 final size:141
Alignment explanation
Indices: 96110676--96110981 Score: 387
Period size: 141 Copynumber: 2.2 Consensus size: 141
96110666 TTTCCCACGT
* * * * *** *
96110676 ATATACACATCCACGTTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACATTT
1 ATATACACATTCACATTCATCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTTCACATTC
* * *
96110741 ATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGG
66 ATCACATTGGCCATTCGGCCTTAGCACACAAATACATGTTCACATTCATCACATTGGCCATTCGG
* *
96110806 TCTTATCACAC
131 CCTTAGCACAC
* * ** *
96110817 AAATGCATGTTCACATTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACATTC
1 ATATACACATTCACATTCATCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTTCACATTC
* * *
96110882 ATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACATTCATCACATTTGCCATTCGG
66 ATCACATTGGCCATTCGGCCTTAGCACACAAATACATGTTCACATTCATCACATTGGCCATTCGG
* *
96110947 CCTTAGCTCAT
131 CCTTAGCACAC
* *
96110958 GTATACACATTCACATCCATCACA
1 ATATACACATTCACATTCATCACA
96110982 AAAAATCCTA
Statistics
Matches: 136, Mismatches: 29, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
141 136 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (141 bp):
ATATACACATTCACATTCATCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTTCACATTC
ATCACATTGGCCATTCGGCCTTAGCACACAAATACATGTTCACATTCATCACATTGGCCATTCGG
CCTTAGCACAC
Found at i:96116373 original size:42 final size:42
Alignment explanation
Indices: 96116308--96116676 Score: 497
Period size: 42 Copynumber: 8.8 Consensus size: 42
96116298 CGTTGACATT
*
96116308 GTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGGCATC
1 GTATCTGATTTTGTGTAAGACCATGTCTGGGACATCGGCATC
* *
96116350 ATATCTGATTTTGTGTAACACCATGTCTGGGACATCGGCATC
1 GTATCTGATTTTGTGTAAGACCATGTCTGGGACATCGGCATC
96116392 GTATCTGATTTTGTGTAAGACCATGTCTGGGACATCGGCATC
1 GTATCTGATTTTGTGTAAGACCATGTCTGGGACATCGGCATC
* * * *
96116434 GTATCTGATTTTGTGTAAGACCGTGCCTGGGACATCGGTAAC
1 GTATCTGATTTTGTGTAAGACCATGTCTGGGACATCGGCATC
* * *
96116476 GTATTTGATTTTGTGTAAGACCGTGTCTGAGACATCGGCATC
1 GTATCTGATTTTGTGTAAGACCATGTCTGGGACATCGGCATC
* * *
96116518 GTATCTAATTTTGTGTAAGACCATGTCTGAGACATCGACATC
1 GTATCTGATTTTGTGTAAGACCATGTCTGGGACATCGGCATC
* * **
96116560 CTATCTGATTTTGTGTAAGGCCATGTCTACGACATCGGCATC
1 GTATCTGATTTTGTGTAAGACCATGTCTGGGACATCGGCATC
* **
96116602 GTATCTGATTTTGTGTAAGACCCTGTCTGGGACAGAGGCATC
1 GTATCTGATTTTGTGTAAGACCATGTCTGGGACATCGGCATC
*** *
96116644 G-ATACTGAATTACATGTAAGACCACGTCTGGGA
1 GTAT-CTG-ATTTTGTGTAAGACCATGTCTGGGA
96116677 TGTCGACATT
Statistics
Matches: 289, Mismatches: 36, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
41 2 0.01
42 267 0.92
43 20 0.07
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (42 bp):
GTATCTGATTTTGTGTAAGACCATGTCTGGGACATCGGCATC
Found at i:96124044 original size:40 final size:40
Alignment explanation
Indices: 96123977--96124180 Score: 243
Period size: 40 Copynumber: 5.1 Consensus size: 40
96123967 CGGAATTTAG
* * *
96123977 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * **
96124017 CCGGGTAT-AGCAACTCCCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* *
96124057 CCAGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* *
96124097 CCAGATATAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
96124137 CCGGATATAATCACTAGCATAAATGCCTTCAGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTC-GGGTCTTAAC
96124177 CCGG
1 CCGG
96124181 GTATCATTCA
Statistics
Matches: 147, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
39 2 0.01
40 140 0.95
41 5 0.03
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:96127432 original size:28 final size:29
Alignment explanation
Indices: 96127400--96127495 Score: 108
Period size: 28 Copynumber: 3.4 Consensus size: 29
96127390 ATAAGCCCGT
*
96127400 ACACTTAGTGCTTA-ATAGTCGAACTCGC
1 ACACTTAGTGCTTACATAATCGAACTCGC
* *
96127428 ACACTTAGTGC-TATATAATCAAACTCGC
1 ACACTTAGTGCTTACATAATCGAACTCGC
* * *
96127456 ACACTTAGTGCTATACA-ATTTGAACCCGC
1 ACACTTAGTGCT-TACATAATCGAACTCGC
96127485 ACACTTAGTGC
1 ACACTTAGTGC
96127496 CAATCTCATG
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 34 0.59
29 19 0.33
30 3 0.05
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
ACACTTAGTGCTTACATAATCGAACTCGC
Found at i:96129469 original size:8 final size:8
Alignment explanation
Indices: 96129456--96129488 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
96129446 AATGACACAT
96129456 ATAACAAA
1 ATAACAAA
96129464 ATAACAAA
1 ATAACAAA
96129472 ATAACAAA
1 ATAACAAA
96129480 ATAACAAA
1 ATAACAAA
96129488 A
1 A
96129489 GCCTTATACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (8 bp):
ATAACAAA
Found at i:96132672 original size:40 final size:39
Alignment explanation
Indices: 96132504--96132674 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
96132494 AGAAATTGAA
* *
96132504 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
96132544 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
96132584 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
96132624 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
96132664 TGATATCCGGG
1 TGATATCCGGG
96132675 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:96146409 original size:28 final size:29
Alignment explanation
Indices: 96146311--96146409 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
96146301 TCACAAATTG
* *
96146311 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
96146340 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
96146368 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
96146396 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
96146410 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:96154038 original size:28 final size:29
Alignment explanation
Indices: 96153940--96154038 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
96153930 TCACAAATTG
* *
96153940 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
96153969 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
96153997 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
96154025 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
96154039 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:96157623 original size:40 final size:40
Alignment explanation
Indices: 96157435--96157659 Score: 235
Period size: 40 Copynumber: 5.7 Consensus size: 40
96157425 TCGAATGATG
* * * *
96157435 TCCGGGCTAAGTCCCGAAGGC-TTTATGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * *
96157475 TCTGGACTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
96157515 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
96157555 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
96157594 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
96157635 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
96157660 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:96157681 original size:79 final size:77
Alignment explanation
Indices: 96157509--96157692 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 77
96157499 GTGCTAAGTG
* *
96157509 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
**
96157574 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* * * *
96157588 ATTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCTGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAA
*
96157652 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
96157667 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
96157693 TACATGATTC
Statistics
Matches: 87, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 27 0.31
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:96160746 original size:28 final size:28
Alignment explanation
Indices: 96160665--96160750 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
96160655 GTGAGCATGA
* **
96160665 ATATGAATGTGACTGGGCCTAACAGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
96160693 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
96160722 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
96160750 A
1 A
96160751 GATACAGGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 27 0.54
29 23 0.46
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:96165336 original size:13 final size:13
Alignment explanation
Indices: 96165318--96165346 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
96165308 CACATGGCTA
96165318 TGTTATGCGCCCG
1 TGTTATGCGCCCG
96165331 TGTTATGCGCCCG
1 TGTTATGCGCCCG
96165344 TGT
1 TGT
96165347 CCTGGCTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.28, G:0.31, T:0.34
Consensus pattern (13 bp):
TGTTATGCGCCCG
Found at i:96172999 original size:25 final size:25
Alignment explanation
Indices: 96172971--96173124 Score: 227
Period size: 25 Copynumber: 6.2 Consensus size: 25
96172961 TTAGCTCTTT
* *
96172971 TGAGCTTACTGTTATTCAACTCGTA
1 TGAGCTTACCGTTATTCAGCTCGTA
* ** * *
96172996 TGAGTTTATTGTTATTCAGCTTGAA
1 TGAGCTTACCGTTATTCAGCTCGTA
*
96173021 TGATCTTACCGTTATTCAGCTCGTA
1 TGAGCTTACCGTTATTCAGCTCGTA
96173046 TGAGCTTACCGTTATTCAGCTCGTA
1 TGAGCTTACCGTTATTCAGCTCGTA
96173071 TGAGCTTACCGTTATTCAGCTCGTA
1 TGAGCTTACCGTTATTCAGCTCGTA
*
96173096 TGAGCTTACCGTTATTCAACTCGTA
1 TGAGCTTACCGTTATTCAGCTCGTA
96173121 TGAG
1 TGAG
96173125 AATAAATGTA
Statistics
Matches: 116, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 116 1.00
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (25 bp):
TGAGCTTACCGTTATTCAGCTCGTA
Found at i:96180215 original size:30 final size:30
Alignment explanation
Indices: 96180180--96180240 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
96180170 TCCTGAACTC
96180180 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
96180210 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
96180240 A
1 A
96180241 GGCTCAGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:96194231 original size:40 final size:40
Alignment explanation
Indices: 96194041--96194224 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
96194031 TCGAATGATG
* * *
96194041 TCCGGGCTAAGTCCCGAAGGC--TT-TGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
96194079 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
96194119 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
96194159 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
96194200 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
96194225 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
38 18 0.14
39 2 0.02
40 103 0.80
41 5 0.04
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:96194231 original size:80 final size:78
Alignment explanation
Indices: 96194041--96194257 Score: 216
Period size: 80 Copynumber: 2.7 Consensus size: 78
96194031 TCGAATGATG
* * **
96194041 TCCGGGCTAAGTCCCGAAGGC-TTTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCG
1 TCCGGGCTAAGTCCCGAAGGCATTTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATTCG
96194105 TGCGAGTTACTAAA
65 TGCGAGTTACTAAA
* *
96194119 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCA-TT-TGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
96194181 TCTGTGCGAGTTACTATAA
62 TC-GTGCGAGTTACTA-AA
*
96194200 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTG--CGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
96194258 TACGTGATTC
Statistics
Matches: 117, Mismatches: 9, Indels: 25
0.77 0.06 0.17
Matches are distributed among these distances:
78 20 0.17
79 22 0.19
80 70 0.60
81 5 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTCGT
GCGAGTTACTAAA
Found at i:96202218 original size:40 final size:40
Alignment explanation
Indices: 96202026--96202211 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
96202016 TCGAATGATG
* * *
96202026 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
96202066 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
96202106 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
96202146 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
96202187 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
96202212 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:96202218 original size:80 final size:80
Alignment explanation
Indices: 96202026--96202244 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 80
96202016 TCGAATGATG
* * **
96202026 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
96202090 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
96202106 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
96202168 TCTGTGCGAGTTACTATAA
64 TC-GTGCGAGTTACTA-AA
* **
96202187 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
96202245 TACGTGATTC
Statistics
Matches: 119, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
79 19 0.16
80 90 0.76
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:96204327 original size:70 final size:70
Alignment explanation
Indices: 96204214--96204349 Score: 263
Period size: 70 Copynumber: 1.9 Consensus size: 70
96204204 TTAAATTGAA
*
96204214 ATGTGAAAATGGTGAGGTTATTCGGGTTGAAACCAATGAATCAAGTGAATTGCCTATTGTGATTT
1 ATGTGAAAATGGTGAGGTTATTCAGGTTGAAACCAATGAATCAAGTGAATTGCCTATTGTGATTT
96204279 CGTTT
66 CGTTT
96204284 ATGTGAAAATGGTGAGGTTATTCAGGTTGAAACCAATGAATCAAGTGAATTGCCTATTGTGATTT
1 ATGTGAAAATGGTGAGGTTATTCAGGTTGAAACCAATGAATCAAGTGAATTGCCTATTGTGATTT
96204349 C
66 C
96204350 ATCTATGTCT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (70 bp):
ATGTGAAAATGGTGAGGTTATTCAGGTTGAAACCAATGAATCAAGTGAATTGCCTATTGTGATTT
CGTTT
Found at i:96207087 original size:38 final size:38
Alignment explanation
Indices: 96207044--96207119 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
96207034 ACACAGCTCA
96207044 GTACATTCATATAATACATTACATGTACAAAGGTATAT
1 GTACATTCATATAATACATTACATGTACAAAGGTATAT
96207082 GTACATTCATATAATACATTACATGTACAAAGGTATAT
1 GTACATTCATATAATACATTACATGTACAAAGGTATAT
96207120 CAACTTCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (38 bp):
GTACATTCATATAATACATTACATGTACAAAGGTATAT
Found at i:96209010 original size:43 final size:43
Alignment explanation
Indices: 96208951--96209053 Score: 154
Period size: 43 Copynumber: 2.4 Consensus size: 43
96208941 ATATCGTACA
* **
96208951 ATGCAAACGTCCCAGACATGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACATAATCACATATCG
*
96208994 ATGCC-ACTGTCCCAGACATGGTCTTACACATAATCACTTATCG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACATAATCACATATCG
96209037 ATGCCAACGTCCCAGAC
1 ATGCCAACGTCCCAGAC
96209054 GTGACGTGGT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
42 2 0.04
43 50 0.93
44 2 0.04
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACATAATCACATATCG
Found at i:96211348 original size:37 final size:37
Alignment explanation
Indices: 96211298--96211380 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 37
96211288 AACCTTTAGT
* * * *
96211298 TCGGGGCTTACCCGGACA-AATTCTCCACCCGTGGTCA
1 TCGGGTCTTACCCGGACATAA-TCTCCACACATAGTCA
96211335 TCGGGTCTTACCCGGACATAATCTCCACACATAGTCA
1 TCGGGTCTTACCCGGACATAATCTCCACACATAGTCA
96211372 TCGGGTCTT
1 TCGGGTCTT
96211381 TAGAGCTCGG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
37 39 0.95
38 2 0.05
ACGTcount: A:0.20, C:0.33, G:0.22, T:0.25
Consensus pattern (37 bp):
TCGGGTCTTACCCGGACATAATCTCCACACATAGTCA
Found at i:96211576 original size:47 final size:47
Alignment explanation
Indices: 96211498--96212035 Score: 833
Period size: 47 Copynumber: 11.3 Consensus size: 47
96211488 CCCTTCGGGA
* * * * * *
96211498 CTTAGCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
96211545 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
96211592 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
96211639 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96211686 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA------GGC
*
96211739 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96211786 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96211833 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96211880 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
96211927 CTTGTCACTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96211974 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96212021 CTTATCACATATATA
1 CTTATCACATATATA
96212036 TATCTCATAC
Statistics
Matches: 464, Mismatches: 21, Indels: 12
0.93 0.04 0.02
Matches are distributed among these distances:
47 419 0.90
53 45 0.10
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:96211601 original size:22 final size:22
Alignment explanation
Indices: 96211573--96211648 Score: 73
Period size: 22 Copynumber: 3.3 Consensus size: 22
96211563 TTTCACATTC
96211573 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * *
96211595 ATCACATATATGCACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
96211619 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
96211642 ATCACAT
1 ATCACAT
96211649 ATATGCACTT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 18 0.44
23 6 0.15
24 6 0.15
25 11 0.27
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:96215919 original size:43 final size:42
Alignment explanation
Indices: 96215871--96215969 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
96215861 GTCCAAACGT
* *
96215871 GGTCTTACATGTAATCAAATATCGATGC-CACTGTCCTAGACAG
1 GGTCTTACATGTAATCAAATA-CAATGCTCA-TGTCCCAGACAG
* * * *
96215914 GGTCTTACACGAAATCAAATACAATGCTGATGTCCCAGACAT
1 GGTCTTACATGTAATCAAATACAATGCTCATGTCCCAGACAG
96215956 GGTCTTACATGTAA
1 GGTCTTACATGTAA
96215970 ATCATAACTC
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 27 0.57
43 20 0.43
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.27
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATACAATGCTCATGTCCCAGACAG
Found at i:96215972 original size:43 final size:44
Alignment explanation
Indices: 96215870--96215986 Score: 127
Period size: 43 Copynumber: 2.7 Consensus size: 44
96215860 CGTCCAAACG
* *
96215870 TGGTCTTACATGT-AATCAAATATCGATGCCACTGTCCTAGACA
1 TGGTCTTACATGTAAATCAAATATCAATGCCACTGTCCCAGACA
* * *
96215913 GGGTCTTACACG-AAATCAAATA-CAATGCTGA-TGTCCCAGACA
1 TGGTCTTACATGTAAATCAAATATCAATGC-CACTGTCCCAGACA
*
96215955 TGGTCTTACATGTAAATCATAA-CTCAATGCCA
1 TGGTCTTACATGTAAATCA-AATATCAATGCCA
96215987 ACATCCTAGA
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
42 25 0.42
43 27 0.45
44 8 0.13
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (44 bp):
TGGTCTTACATGTAAATCAAATATCAATGCCACTGTCCCAGACA
Found at i:96218936 original size:53 final size:54
Alignment explanation
Indices: 96218856--96219062 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
96218846 TTCCTTTTTA
* * *
96218856 AACTTACCATTGCGATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * * *
96218909 AACTCACCATTGCCATGCCTTGGCATGGTTTTACAAGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * *
96218963 TAGTTTATCAATGCCTTGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
96219018 AACTTACCAATGTCATGTCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
96219063 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 33, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 43 0.36
54 37 0.31
55 39 0.33
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:96225094 original size:29 final size:29
Alignment explanation
Indices: 96225007--96225196 Score: 163
Period size: 29 Copynumber: 6.6 Consensus size: 29
96224997 CTACTCGATT
*
96225007 TCGCACACTTAGTGCCACGTA-ATTT-AAGC
1 TCGCACACTTAGTGCCA--TATATTTCCAGC
** ***
96225036 TCGCACACACAGTGCCATA-CCCTCCGAGC
1 TCGCACACTTAGTGCCATATATTTCC-AGC
** * *
96225065 TCGCACACCCAGTGCCGTATTTTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
* * * *
96225094 TTGCACACATAGTGTCATATTTTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
*
96225123 AT-GCACACTTAGTGCCTTATATTTCCAGC
1 -TCGCACACTTAGTGCCATATATTTCCAGC
*
96225152 ACGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
*
96225181 ACGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
96225197 GATCTCGTCA
Statistics
Matches: 134, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
27 3 0.02
29 127 0.95
30 4 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATATTTCCAGC
Found at i:96227011 original size:40 final size:40
Alignment explanation
Indices: 96226966--96227132 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
96226956 CGGAATATAA
96226966 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
96227006 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
96227046 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
96227086 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
96227125 CCGGATAT
1 CCGGATAT
96227133 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:96227116 original size:80 final size:79
Alignment explanation
Indices: 96226982--96227132 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
96226972 ATAATCACGT
*
96226982 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
96227047 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
96227062 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
96227125 CCGGATAT
64 CCGGATAT
96227133 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:96235940 original size:28 final size:28
Alignment explanation
Indices: 96235879--96235943 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
96235869 TCAGTGTACG
* **
96235879 AAATATTGAGAATGGCACTTAATGTGTG
1 AAATATTGAGAATGACACTTAATGTGCA
* *
96235907 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAATGTGCA
96235935 AAATATTGA
1 AAATATTGA
96235944 ATGATTAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATGTGCA
Found at i:96236060 original size:39 final size:39
Alignment explanation
Indices: 96236016--96236135 Score: 179
Period size: 39 Copynumber: 3.1 Consensus size: 39
96236006 GACTTTATAA
96236016 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
96236055 TGGTGTTATATCCGGGTTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
96236094 TGGTGTTATATCCAGGCTAAAGTCCCGCAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
96236133 TGG
1 TGG
96236136 AATTGTATCC
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 62 0.85
40 11 0.15
ACGTcount: A:0.17, C:0.23, G:0.31, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:96236145 original size:39 final size:39
Alignment explanation
Indices: 96236111--96236312 Score: 246
Period size: 39 Copynumber: 5.1 Consensus size: 39
96236101 ATATCCAGGC
**
96236111 TAAAGTCCCGCAGGCTTTGTGCTGGAATTGTATCCGGACT
1 TAAAGT-CCGCAGGCTTCATGCTGGAATTGTATCCGGACT
* *
96236151 TAAGGTCCGCAGGCTTCATGCTAGAATTGTATCCGGACT
1 TAAAGTCCGCAGGCTTCATGCTGGAATTGTATCCGGACT
* *
96236190 TAAGGTCCGCAGGCTTCATGCTAGAATTGTATCCGGACT
1 TAAAGTCCGCAGGCTTCATGCTGGAATTGTATCCGGACT
* *
96236229 TAAGGTCCGCAAGCTTCATGCTGGAATTGTATCCAGG-CT
1 TAAAGTCCGCAGGCTTCATGCTGGAATTGTATCC-GGACT
* * * *
96236268 TAAAGACTCGTAGGCTAT-ATGCTGGAATTATATCCGGGCT
1 TAAAGTC-CGCAGGCT-TCATGCTGGAATTGTATCCGGACT
96236308 TAAAG
1 TAAAG
96236313 ACCCGTAGGC
Statistics
Matches: 147, Mismatches: 11, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
39 110 0.75
40 36 0.24
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (39 bp):
TAAAGTCCGCAGGCTTCATGCTGGAATTGTATCCGGACT
Found at i:96236184 original size:78 final size:79
Alignment explanation
Indices: 96236102--96236310 Score: 280
Period size: 78 Copynumber: 2.7 Consensus size: 79
96236092 GCTGGTGTTA
* *
96236102 TATCCAGGC-TAAAGTCCCGCAGGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCT
1 TATCCAGGCTTAAAGTCCCGCAGGCTTTATGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCT
96236166 TCATGCTAGAATTG
66 TCATGCTAGAATTG
* * *
96236180 TATCC-GGACTTAAGGT-CCGCAGGCTTCATGCTAGAATTGTATCCGGACTTAAGGTCCGCAAGC
1 TATCCAGG-CTTAAAGTCCCGCAGGCTTTATGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGC
*
96236243 TTCATGCTGGAATTG
65 TTCATGCTAGAATTG
* * * * * *
96236258 TATCCAGGCTTAAAGACTCGTAGGCTATATGCTGGAATTATATCCGGGCTTAA
1 TATCCAGGCTTAAAGTCCCGCAGGCTTTATGCTGGAATTGTATCCGGACTTAA
96236311 AGACCCGTAG
Statistics
Matches: 112, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
77 2 0.02
78 74 0.66
79 36 0.32
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (79 bp):
TATCCAGGCTTAAAGTCCCGCAGGCTTTATGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCT
TCATGCTAGAATTG
Found at i:96236302 original size:40 final size:40
Alignment explanation
Indices: 96236246--96236323 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
96236236 CGCAAGCTTC
* *
96236246 ATGCTGGAATTGTATCCAGGCTTAAAGACTCGTAGGCTAT
1 ATGCTGGAATTATATCCAGGCTTAAAGACCCGTAGGCTAT
*
96236286 ATGCTGGAATTATATCCGGGCTTAAAGACCCGTAGGCT
1 ATGCTGGAATTATATCCAGGCTTAAAGACCCGTAGGCT
96236324 TTTTGTTGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (40 bp):
ATGCTGGAATTATATCCAGGCTTAAAGACCCGTAGGCTAT
Found at i:96239884 original size:29 final size:29
Alignment explanation
Indices: 96239850--96239981 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
96239840 TACTCGATTT
* * *
96239850 CGCACACTTAGTGCCATGTGATTT-AAGCC
1 CGCACACTTAGTGCCATAT-ATTTCCAGCA
** *** * *
96239879 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
96239908 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
96239937 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
96239966 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
96239982 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:96249243 original size:29 final size:29
Alignment explanation
Indices: 96249181--96249283 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
96249171 GTGACGAGAT
* * *
96249181 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
96249210 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
96249239 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
96249268 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
96249284 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:96263927 original size:40 final size:40
Alignment explanation
Indices: 96263878--96264205 Score: 394
Period size: 40 Copynumber: 8.2 Consensus size: 40
96263868 TCTTCGGAAT
* **
96263878 TTAG-CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTC
* * *** * *
96263917 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
96263957 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
* ** *
96263997 TTAGCCCGGATATAAGC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
* *
96264037 TTAGCCCGGGTTTAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
*
96264077 TTAGCCCGGGTATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
* *
96264117 TTAGCCCGGGTATAACAACTCGCACGAAAGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
* ** *
96264157 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
96264197 TTAGCCCGG
1 TTAGCCCGG
96264206 GTATCATTCA
Statistics
Matches: 251, Mismatches: 33, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
39 4 0.02
40 243 0.97
41 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
Found at i:96264095 original size:120 final size:119
Alignment explanation
Indices: 96263878--96264209 Score: 436
Period size: 120 Copynumber: 2.8 Consensus size: 119
96263868 TCTTCGGAAT
* * * *** *
96263878 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTAGCAC
*
96263942 AAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
65 AAATGCCTTCGGGTCTTAGCCCGGGTATAACAACTCGCACGAATGCCTTCGGGTC
* * * *
96263997 TTAGCCCGGATATAAGCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTTTAACAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTAGCAC
*
96264062 GAATGCCTTCGGGTCTTAGCCCGGGTATAACAACTCGCACGAATGCCTTCGGGTC
65 AAATGCCTTCGGGTCTTAGCCCGGGTATAACAACTCGCACGAATGCCTTCGGGTC
* * *
96264117 TTAGCCCGGGTATAACAACTCGCACGAAA-GCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGC
1 TTAGCCCGGATATAAC-ACTAGCAC-AAATGCCTTCGGGTCTTAGCCCGGATTTAA-CAACTAGC
* *
96264180 ATAAATGCCTTCGGGACTTAGCCCGGGTAT
63 ACAAATGCCTTCGGGTCTTAGCCCGGGTAT
96264210 CATTCAAATG
Statistics
Matches: 186, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
119 5 0.03
120 177 0.95
121 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (119 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTAGCACA
AATGCCTTCGGGTCTTAGCCCGGGTATAACAACTCGCACGAATGCCTTCGGGTC
Found at i:96264206 original size:80 final size:80
Alignment explanation
Indices: 96263905--96264209 Score: 441
Period size: 80 Copynumber: 3.8 Consensus size: 80
96263895 CAAGCACAAT
* * ** * * * *
96263905 TGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTAT
96263970 AACAACTCGCACGAA
66 AACAACTCGCACGAA
* * *
96263985 TGCCTTCGGGTCTTAGCCCGGATATAAGCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTTT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTAT
96264050 AACAACTCGCACGAA
66 AACAACTCGCACGAA
* * * *
96264065 TGCCTTCGGGTCTTAGCCCGGGTATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGGTA
1 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTA
96264129 TAACAACTCGCACGAA
65 TAACAACTCGCACGAA
* *
96264145 AGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTAT
96264210 CATTCAAATG
Statistics
Matches: 200, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
79 1 0.00
80 198 0.99
81 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTAT
AACAACTCGCACGAA
Found at i:96275574 original size:29 final size:29
Alignment explanation
Indices: 96275546--96275677 Score: 210
Period size: 29 Copynumber: 4.6 Consensus size: 29
96275536 CCTCCGAGCT
** * * *
96275546 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
96275575 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
96275604 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
96275633 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
96275662 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
96275678 ATCTTGTCAC
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:96275588 original size:87 final size:87
Alignment explanation
Indices: 96275488--96275677 Score: 206
Period size: 87 Copynumber: 2.2 Consensus size: 87
96275478 TACTCGATTT
* * *
96275488 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCTCGCA
1 CGCACACTTAGTGCCA--TATATTTCAAGCACGCACACACAGTGCCATATACCTCC-AGCACGCA
* * *
96275550 CACCCAGTGCCGTATTTTTCCAGCT
63 CACCCAGTGCCATATATTTCCAGCA
* * ** **
96275575 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCATATATTTCAAGCACGCACACACAGTGCCATATACCTCCAGCACGCACAC
**
96275640 TTAGTGCCATATATTTCCAGCA
66 CCAGTGCCATATATTTCCAGCA
96275662 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
96275678 ATCTTGTCAC
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
85 2 0.02
86 4 0.05
87 76 0.89
88 3 0.04
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (87 bp):
CGCACACTTAGTGCCATATATTTCAAGCACGCACACACAGTGCCATATACCTCCAGCACGCACAC
CCAGTGCCATATATTTCCAGCA
Found at i:96283668 original size:29 final size:29
Alignment explanation
Indices: 96283640--96283771 Score: 210
Period size: 29 Copynumber: 4.6 Consensus size: 29
96283630 CCTCCGAGCT
** * * *
96283640 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
96283669 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
96283698 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
96283727 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
96283756 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
96283772 ATCTCGTCAC
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:96283682 original size:87 final size:87
Alignment explanation
Indices: 96283582--96283771 Score: 206
Period size: 87 Copynumber: 2.2 Consensus size: 87
96283572 TACTCGATTT
* * *
96283582 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCTCGCA
1 CGCACACTTAGTGCCA--TATATTTCAAGCACGCACACACAGTGCCATATACCTCC-AGCACGCA
* * *
96283644 CACCCAGTGCCGTATTTTTCCAGCT
63 CACCCAGTGCCATATATTTCCAGCA
* * ** **
96283669 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCATATATTTCAAGCACGCACACACAGTGCCATATACCTCCAGCACGCACAC
**
96283734 TTAGTGCCATATATTTCCAGCA
66 CCAGTGCCATATATTTCCAGCA
96283756 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
96283772 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
85 2 0.02
86 4 0.05
87 76 0.89
88 3 0.04
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (87 bp):
CGCACACTTAGTGCCATATATTTCAAGCACGCACACACAGTGCCATATACCTCCAGCACGCACAC
CCAGTGCCATATATTTCCAGCA
Found at i:96286295 original size:42 final size:42
Alignment explanation
Indices: 96286176--96286306 Score: 129
Period size: 42 Copynumber: 3.1 Consensus size: 42
96286166 CACATAGTAC
* * *
96286176 CATACCAATGCCATATCCCAGATATGGTCTTACATGTAATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
* *** * * *
96286218 CATGTCGGCGCCAATAGCACA-ACTATGGTCTTACACGAAATGT
1 CATATCAATGCC-ATATCCCAGA-TATGGTCTTACACGAAATCT
* *
96286261 CATATCAATGCCATATCCCAGATATGGTCATACACAAAATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
96286303 CATA
1 CATA
96286307 ATTGTAACAC
Statistics
Matches: 67, Mismatches: 19, Indels: 6
0.73 0.21 0.07
Matches are distributed among these distances:
42 35 0.52
43 32 0.48
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.27
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
Found at i:96291675 original size:18 final size:19
Alignment explanation
Indices: 96291654--96291689 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
96291644 AATAAAGAAA
*
96291654 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
96291672 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
96291690 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:96293170 original size:29 final size:29
Alignment explanation
Indices: 96293028--96293158 Score: 226
Period size: 29 Copynumber: 4.5 Consensus size: 29
96293018 AAAATTGTAC
*
96293028 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
* * *
96293057 ATCACTAAGTGTGCTAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
96293086 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
96293115 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
96293144 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
96293159 GATTCACTAT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 97 1.00
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:96293969 original size:18 final size:16
Alignment explanation
Indices: 96293946--96293980 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
96293936 AAATCACTAA
96293946 AAATAGTAGAATAGAATT
1 AAATAGT-GAATA-AATT
96293964 AAATAGTGAATAAATT
1 AAATAGTGAATAAATT
96293980 A
1 A
96293981 TGAAATTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 5 0.29
18 7 0.41
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (16 bp):
AAATAGTGAATAAATT
Found at i:96298234 original size:18 final size:19
Alignment explanation
Indices: 96298213--96298248 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
96298203 AATAAAGAAA
*
96298213 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
96298231 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
96298249 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:96299102 original size:2 final size:2
Alignment explanation
Indices: 96299095--96299119 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
96299085 CGTGATGCCC
96299095 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
96299120 CATAAGTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:96299638 original size:29 final size:29
Alignment explanation
Indices: 96299596--96299726 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
96299586 AAAATTGTAC
96299596 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
96299625 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
96299654 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
96299683 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
96299712 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
96299727 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 101 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:96301231 original size:48 final size:49
Alignment explanation
Indices: 96301156--96301671 Score: 407
Period size: 48 Copynumber: 10.7 Consensus size: 49
96301146 TGATATGTGT
* * * *
96301156 GCTAGTGTAAGACTATGTTTGGGACATGGCGTCAGCCA-CGATACAAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCATTGATACGAGA
* * * *
96301204 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCGATGTGGT--GAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCAT-TGATACGAGA
* * * * * * *
96301252 GCTAGTGGAAGACCATGTTTGGGACCTGGCATC-GACATTGACATGTGT
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCATTGATACGAGA
*
96301300 GCTAGTGTAAGACCATGTTTGGGACATGACATCAGCCACATT-AT--GAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAG-C-CATTGATACGAGA
* * * * * * * * *
96301348 GCCAGTGTAAGACCATGTCTAGGACATGGCCTC-GGCATTGACATGTGT
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCATTGATACGAGA
* * *
96301396 GCTAGTGTAAGACCATGTTTGGGACATGGCATC-GGCATTGAGACAAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCATTGATACGAGA
* * * * *
96301444 GCTAGTGTATGACCATGTCTGGGACATAGCATCGGTGACA-T--TACGAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATC--AGCCATTGATACGAGA
* * * * * * * *
96301492 GCCAGTGTAAGACCATGTCTGTGACATGGCATC-GGCATTGACATGTGT
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCATTGATACGAGA
** *
96301540 GCTAGTGTAAGACTGTGTTTGGGACATGGCATCAG-CATTGAGACGAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCATTGATACGAGA
* * * * *
96301588 GCTAGTGTAAGACCATGTCTGGGACATGGCATCA-CCCTCGACATGTA-A
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCATTGATACG-AGA
* *
96301636 GCTGGTGTAAGACCATGTTTGGAACATGGCATCAGC
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGC
96301672 AATTCACTAC
Statistics
Matches: 372, Mismatches: 76, Indels: 39
0.76 0.16 0.08
Matches are distributed among these distances:
45 7 0.02
46 4 0.01
47 4 0.01
48 342 0.92
49 4 0.01
50 4 0.01
51 7 0.02
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCATTGATACGAGA
Found at i:96301410 original size:144 final size:143
Alignment explanation
Indices: 96301156--96301621 Score: 573
Period size: 144 Copynumber: 3.2 Consensus size: 143
96301146 TGATATGTGT
* * * * * *
96301156 GCTAGTGTAAGACTATGTTTGGGACATGGCGTCAGCCACGA-TACAAGAGCTAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCAC-ATTACGAGAGCCAGTGTAAGACCAT
* * * * * *
96301220 GTTTGGAACATGGCATCGGCGATGTG--GTGAGAGCTAGTGGAAGACCATGTTTGGGACCTGGCA
65 GTCTGG-ACATGGCATCGGC-AT-TGACATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCA
* * * *
96301283 TCGACATTGACATGTGT
127 TCGACATTGAGACGAGA
* *
96301300 GCTAGTGTAAGACCATGTTTGGGACATGACATCAGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCACATTACGAGAGCCAGTGTAAGACCATG
*
96301365 TCTAGGACATGGCCTCGGCATTGACATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCG
66 TCT-GGACATGGCATCGGCATTGACATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCG
* *
96301430 GCATTGAGACAAGA
130 ACATTGAGACGAGA
* * **
96301444 GCTAGTGTATGACCATGTCTGGGACAT-AGCATCGGTGACATTACGAGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGA-CATCAGCCACATTACGAGAGCCAGTGTAAGACCAT
**
96301508 GTCTGTGACATGGCATCGGCATTGACATGTGTGCTAGTGTAAGACTGTGTTTGGGACATGGCATC
65 GTCTG-GACATGGCATCGGCATTGACATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATC
96301573 -AGCATTGAGACGAGA
129 GA-CATTGAGACGAGA
*
96301588 GCTAGTGTAAGACCATGTCTGGGACATGGCATCA
1 GCTAGTGTAAGACCATGTCTGGGACATGACATCA
96301622 CCCTCGACAT
Statistics
Matches: 281, Mismatches: 33, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
142 2 0.01
143 5 0.02
144 272 0.97
145 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (143 bp):
GCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCACATTACGAGAGCCAGTGTAAGACCATG
TCTGGACATGGCATCGGCATTGACATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGA
CATTGAGACGAGA
Found at i:96306699 original size:48 final size:48
Alignment explanation
Indices: 96306640--96307002 Score: 222
Period size: 48 Copynumber: 7.6 Consensus size: 48
96306630 GTGTGCTAGC
**
96306640 GTAAGACCATGTCTGGGACATGGTGTCGGCCATAATATGAGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCATAATATGAGAGCCAGT
* ** *** *
96306688 GTAAGATCATGT-TGAAACATGGCATCGAAAAT-ATGGTGAGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCATAAT-ATGAGAGCCAGT
* * * * * * *
96306735 GTAAGACCATGTATGGGACATGGAATCGG-CATTGACATGTGTGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCA-TAATATGAGAGCCAGT
* * * * *
96306783 GTAAGACCATGTCTGGGACATGGCATCAGCGACATTATGAGAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCATAATATGAGAGCCAGT
* * * * * *
96306831 GTAAGACCATGTCTGGGACATGGTATC-GACATTGACATGTG-TCCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCA-TAATATGAGAGCC-AGT
* * * ** *
96306879 CTAAGACCATGTCTGGGATATGGCATCAG-CATTGAA-ACAAGAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCA-T-AATATGAGAGCCAGT
* * ** * *
96306927 GGAAGACCATGTTTGGGACATGGCATCAACC-TCGACATGTA-AGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCAT-AATATG-AGAGCCAGT
* *
96306975 GTAAGACCATGTTTGGAACATGGCATCG
1 GTAAGACCATGTCTGGGACATGGCATCG
96307003 ACAATTCACC
Statistics
Matches: 240, Mismatches: 62, Indels: 26
0.73 0.19 0.08
Matches are distributed among these distances:
46 2 0.01
47 41 0.17
48 190 0.79
49 7 0.03
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCCATAATATGAGAGCCAGT
Found at i:96306841 original size:96 final size:94
Alignment explanation
Indices: 96306724--96307001 Score: 324
Period size: 96 Copynumber: 2.9 Consensus size: 94
96306714 GAAAATATGG
* *
96306724 TGAGAGCCAGTGTAAGACCATGTATGGGACATGGAATCGGCATTGACATGTGTGCTAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTATGGGACATGGAATCGACATTGACATGTGTGCTAGTGTAAGA
96306789 CCATGTCTGGGACATGGCATCAGCGACATT-A
66 CCATGTCTGGGACATGGCATCA--G-CATTAA
* * * *
96306820 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGTATCGACATTGACATGTGTCCTAGTCTAAGA
1 TGAGAGCTAGTGTAAGACCATGTATGGGACATGGAATCGACATTGACATGTGTGCTAGTGTAAGA
*
96306885 CCATGTCTGGGATATGGCATCAGCATTGAAA
66 CCATGTCTGGGACATGGCATCAGCATT--AA
** * * * * * * ** *
96306916 CAAGAGCTAGTGGAAGACCATGTTTGGGACATGGCATCAACCTCGACATGTAAGCCAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTATGGGACATGGAATCGACATTGACATGTGTGCTAGTGTAAGA
* *
96306981 CCATGTTTGGAACATGGCATC
66 CCATGTCTGGGACATGGCATC
96307002 GACAATTCAC
Statistics
Matches: 156, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
93 4 0.03
94 1 0.01
96 151 0.97
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (94 bp):
TGAGAGCTAGTGTAAGACCATGTATGGGACATGGAATCGACATTGACATGTGTGCTAGTGTAAGA
CCATGTCTGGGACATGGCATCAGCATTAA
Found at i:96306933 original size:144 final size:143
Alignment explanation
Indices: 96306736--96307005 Score: 337
Period size: 144 Copynumber: 1.9 Consensus size: 143
96306726 AGAGCCAGTG
* * *** * *
96306736 TAAGACCATGTATGGGACATGGAATCGGCATTGACATGTGTGCTAGTGTAAGACCATGTCTGGGA
1 TAAGACCATGTATGGGACATGGAATCAGCATTGAAACAAGAGCTAGTGGAAGACCATGTCTGGGA
* * *
96306801 CATGGCATC-A-GCGACATTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGTATCGACATT
66 CATGGCATCAACGCGACA-TAT-A-AGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACATT
96306864 GACATGTGTCCTAGTC
128 GACATGTGTCCTAGTC
* * * *
96306880 TAAGACCATGTCTGGGATATGGCATCAGCATTGAAACAAGAGCTAGTGGAAGACCATGTTTGGGA
1 TAAGACCATGTATGGGACATGGAATCAGCATTGAAACAAGAGCTAGTGGAAGACCATGTCTGGGA
* * *
96306945 CATGGCATCAACCTCGACATGTAAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACA
66 CATGGCATCAA-CGCGACATATAAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACA
96307006 ATTCACCGCT
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
144 97 0.92
145 2 0.02
146 2 0.02
147 5 0.05
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (143 bp):
TAAGACCATGTATGGGACATGGAATCAGCATTGAAACAAGAGCTAGTGGAAGACCATGTCTGGGA
CATGGCATCAACGCGACATATAAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGAC
ATGTGTCCTAGTC
Found at i:96311665 original size:13 final size:13
Alignment explanation
Indices: 96311647--96311685 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
96311637 ATAGGAATCA
*
96311647 AACACGGGCGTGT
1 AACACGGGTGTGT
*
96311660 AACACGAGTGTGT
1 AACACGGGTGTGT
*
96311673 CACACGGGTGTGT
1 AACACGGGTGTGT
96311686 TCCTGGCGAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.23, C:0.21, G:0.36, T:0.21
Consensus pattern (13 bp):
AACACGGGTGTGT
Found at i:96312064 original size:14 final size:13
Alignment explanation
Indices: 96312043--96312075 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
96312033 AAATATTTAA
96312043 CTTGTTCTTAATT
1 CTTGTTCTTAATT
96312056 CTGTGTTCTTAATT
1 CT-TGTTCTTAATT
96312070 CTTGTT
1 CTTGTT
96312076 TTGTTATCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.61
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:96314504 original size:48 final size:48
Alignment explanation
Indices: 96314132--96314506 Score: 206
Period size: 48 Copynumber: 7.8 Consensus size: 48
96314122 AATTGTCGAT
* * * * * *
96314132 GCCATGTTCCA-ATCATGGTCTTACACTGGCTCACATGTTAAGGTCGAG
1 GCCATGTCCCAGA-CATGGTCTTACACTGGCTCACATATCATGGCCGAC
* * * * * * *
96314180 GCGATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAAT-GTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATATC-ATGGCCGAC
* ** ** * * ** *
96314228 GCTATGTCCTGGACATGGTCTTACACTCACTCACATGTC-CGAGTTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCATG-GCCGAC
* * * * * ** *
96314276 GCCATGTCCCATACATCGTCTTACACTGGCTCTCATGT-GTGGCTAAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCATGGCCGAC
* * * * **
96314323 GCCATGCCCCAGACATAGTCATACACTAGCAAACATATCAAT-GCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATATC-ATGGCCGAC
* * * *
96314371 ACCATGTCCCAGATATGGTCTTACACTGGCTTTCACA-A-CATCGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGC--TCACATATCATGGCCGAC
* * * * *
96314419 GCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCATGGCCGAC
* * *
96314467 GCCATGTCCTAGACATTGTCTTACACTGGCACACATATCA
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCA
96314507 CCCAAATGTC
Statistics
Matches: 247, Mismatches: 68, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
46 4 0.02
47 36 0.15
48 200 0.81
49 4 0.02
50 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCATGGCCGAC
Found at i:96321938 original size:48 final size:48
Alignment explanation
Indices: 96321861--96322137 Score: 209
Period size: 48 Copynumber: 5.8 Consensus size: 48
96321851 AGGGTGAATT
* * * * *
96321861 GCCGATGCCATGTTCCAAACTTGGTCTTACA-TGGTCTCACATGTCGAG
1 GCCGATGCCATATCCCAAACATGGTCTTACACTAG-CTCACATGTCAAG
* * * ** *
96321909 GCCGATGCCATATCCCAGACATGGCCTTACACTAGCTCTCATCCCAAT
1 GCCGATGCCATATCCCAAACATGGTCTTACACTAGCTCACATGTCAAG
* *
96321957 GCCGATGCCATATGCCAAATATGGTCTTACACTAGCTCACATGTCAAG
1 GCCGATGCCATATCCCAAACATGGTCTTACACTAGCTCACATGTCAAG
* * * * * * * * **
96322005 GCTGATGTCATGTCCTAGACATGGTCTTACAATGGCTCTCATGTTGTA-
1 GCCGATGCCATATCCCAAACATGGTCTTACACTAGCTCACATG-TCAAG
* * * * * * * *
96322053 GCCG-TGCCTTGTCTCAAACATGGTTTTACAGTAGCACACATATCAAT
1 GCCGATGCCATATCCCAAACATGGTCTTACACTAGCTCACATGTCAAG
* * *
96322100 GTCGATGCCATGTCCCAAACATGGTCTTAGACTAGCTC
1 GCCGATGCCATATCCCAAACATGGTCTTACACTAGCTC
96322138 TCACAACATC
Statistics
Matches: 173, Mismatches: 52, Indels: 8
0.74 0.22 0.03
Matches are distributed among these distances:
46 2 0.01
47 30 0.17
48 137 0.79
49 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATATCCCAAACATGGTCTTACACTAGCTCACATGTCAAG
Found at i:96321986 original size:96 final size:96
Alignment explanation
Indices: 96321860--96322046 Score: 243
Period size: 96 Copynumber: 1.9 Consensus size: 96
96321850 GAGGGTGAAT
* * * *
96321860 TGCCGATGCCATGTTCCAAACTTGGTCTTACA-TGGTCTCACATGTCGAGGCCGATGCCATATCC
1 TGCCGATGCCATATGCCAAACTTGGTCTTACACTAG-CTCACATGTCAAGGCCGATGCCATATCC
*
96321924 CAGACATGGCCTTACACTAGCTCTCATCCCAA
65 CAGACATGGCCTTACAATAGCTCTCATCCCAA
* * *
96321956 TGCCGATGCCATATGCCAAA-TATGGTCTTACACTAGCTCACATGTCAAGGCTGATGTCATGTCC
1 TGCCGATGCCATATGCCAAACT-TGGTCTTACACTAGCTCACATGTCAAGGCCGATGCCATATCC
* * *
96322020 TAGACATGGTCTTACAATGGCTCTCAT
65 CAGACATGGCCTTACAATAGCTCTCAT
96322047 GTTGTAGCCG
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
95 1 0.01
96 75 0.96
97 2 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (96 bp):
TGCCGATGCCATATGCCAAACTTGGTCTTACACTAGCTCACATGTCAAGGCCGATGCCATATCCC
AGACATGGCCTTACAATAGCTCTCATCCCAA
Found at i:96322447 original size:14 final size:14
Alignment explanation
Indices: 96322428--96322455 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
96322418 CGATGTAGGA
96322428 CTGGATTTCATCTT
1 CTGGATTTCATCTT
96322442 CTGGATTTCATCTT
1 CTGGATTTCATCTT
96322456 TCTTGATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.50
Consensus pattern (14 bp):
CTGGATTTCATCTT
Found at i:96325913 original size:43 final size:43
Alignment explanation
Indices: 96325866--96325970 Score: 113
Period size: 43 Copynumber: 2.4 Consensus size: 43
96325856 TCCCAGATAT
* * **
96325866 GGTCTTACATGTTAA-CACATATCTATGCCTCTGTCCCAAACAG
1 GGTCTTACACG-TAATCACATATCGATGCCAATGTCCCAAACAG
* * *
96325909 GGTCTTACACGTAATCTCATATCGATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATCACATATCGATGCCAATGTCCCAAACAG
**
96325952 GGTCTTACACAAAATCACA
1 GGTCTTACACGTAATCACA
96325971 CCTTGAAAGT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 3 0.06
43 48 0.94
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAATCACATATCGATGCCAATGTCCCAAACAG
Found at i:96327264 original size:28 final size:28
Alignment explanation
Indices: 96327224--96327277 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
96327214 ATAGTCTCGG
*
96327224 TAACCCTAATGCCATGACATTTGTATGC
1 TAACCCTAATGCCATGACAATTGTATGC
96327252 TAACCCTAATGCCATGACAATTGTAT
1 TAACCCTAATGCCATGACAATTGTAT
96327278 CCTATCTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31
Consensus pattern (28 bp):
TAACCCTAATGCCATGACAATTGTATGC
Found at i:96332736 original size:143 final size:143
Alignment explanation
Indices: 96332478--96332771 Score: 579
Period size: 143 Copynumber: 2.1 Consensus size: 143
96332468 GTTAAAATTT
*
96332478 GGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATGAG
1 GGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATGAG
96332543 TGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTGTG
66 TGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTGTG
96332608 TGCATGAGTATTC
131 TGCATGAGTATTC
96332621 GGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATGAG
1 GGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATGAG
96332686 TGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTGTG
66 TGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTGTG
96332751 TGCATGAGTATTC
131 TGCATGAGTATTC
96332764 GGCCATGC
1 GGCCATGC
96332772 TATAGAATTT
Statistics
Matches: 150, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 150 1.00
ACGTcount: A:0.21, C:0.10, G:0.30, T:0.39
Consensus pattern (143 bp):
GGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATGAG
TGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTGTG
TGCATGAGTATTC
Found at i:96333448 original size:29 final size:29
Alignment explanation
Indices: 96333415--96333546 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
96333405 GTGACGAGAT
* *
96333415 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
96333444 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
96333473 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* * *
96333502 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* **
96333531 CGGCACTGGGTGTGCA
1 TGGCACTAAGTGTGCA
96333547 GCTCGGAGGG
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:96339806 original size:143 final size:143
Alignment explanation
Indices: 96339597--96339894 Score: 587
Period size: 143 Copynumber: 2.1 Consensus size: 143
96339587 GTGAGTTAAA
*
96339597 ATTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
96339662 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
96339727 TGTGTGCATGAGT
131 TGTGTGCATGAGT
96339740 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
96339805 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
96339870 TGTGTGCATGAGT
131 TGTGTGCATGAGT
96339883 ATTCGGCCATGC
1 ATTCGGCCATGC
96339895 TATAGAATTT
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 154 1.00
ACGTcount: A:0.21, C:0.10, G:0.29, T:0.39
Consensus pattern (143 bp):
ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
TGTGTGCATGAGT
Done.