Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 315 of 770
Found at i:96340571 original size:29 final size:29
Alignment explanation
Indices: 96340538--96340669 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
96340528 GTGACGAGAT
* *
96340538 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
96340567 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
96340596 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* * *
96340625 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* **
96340654 CGGCACTGGGTGTGCA
1 TGGCACTAAGTGTGCA
96340670 AGCTCGGAGG
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:96346065 original size:40 final size:40
Alignment explanation
Indices: 96346020--96346181 Score: 256
Period size: 40 Copynumber: 4.1 Consensus size: 40
96346010 CTAAGATCCA
* *
96346020 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
96346060 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
96346100 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
* ** *
96346140 AAGGCATTTGTGTGAGTTGTTATATCC-GGCTAAAT-CCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
96346178 AAGG
1 AAGG
96346182 TACTTGGGTT
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
38 7 0.06
39 7 0.06
40 102 0.88
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
Found at i:96356266 original size:26 final size:26
Alignment explanation
Indices: 96356237--96356287 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96356227 AAATTAATGC
96356237 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96356263 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96356288 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96357813 original size:47 final size:47
Alignment explanation
Indices: 96357761--96358003 Score: 364
Period size: 47 Copynumber: 5.2 Consensus size: 47
96357751 TTCCACGTTT
* *
96357761 ATCACATTGGCCATTCTACCTTATCACACATATGCATGTTCACATTT
1 ATCACATTGGCCATTCTGCCTTATCACACATATGCATGTTCACATTC
* *
96357808 GTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCTGCCTTATCACACATATGCATGTTCACATTC
* *
96357855 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCTGCCTTATCACACATATGCATGTTCACATTC
* *
96357902 ATCACATTGGCCATT-TGGCCTTATCACCCATATGCATGTTCACACTC
1 ATCACATTGGCCATTCT-GCCTTATCACACATATGCATGTTCACATTC
* *
96357949 ATCACATTGGCCATT-TGGCCTTATCACATATATGCATGTCCACATTC
1 ATCACATTGGCCATTCT-GCCTTATCACACATATGCATGTTCACATTC
96357996 ATCACATT
1 ATCACATT
96358004 AAGTCCTAAA
Statistics
Matches: 181, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 181 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.34
Consensus pattern (47 bp):
ATCACATTGGCCATTCTGCCTTATCACACATATGCATGTTCACATTC
Found at i:96357887 original size:141 final size:141
Alignment explanation
Indices: 96357715--96358004 Score: 397
Period size: 141 Copynumber: 2.1 Consensus size: 141
96357705 CATACATATC
* * *
96357715 TCACATTAGCCATTCGGCTTCGCCACATATATACACT-TCCACGTTTATCACATTGGCCATTCT-
1 TCACATTAGCCATTCGGCTTCACCACATATATACA-TGTCCACATTCATCACATTGGCCATT-TG
* **
96357778 ACCTTATCACACATATGCATGTTCACATTTGTCACATTGGCCATTCGGCCTTATCACACATATGC
64 ACCTTATCACACATATGCATGTTCACACTCATCACATTGGCCATTCGGCCTTATCACACATATGC
*
96357843 ATGTTCACATTCA
129 ATGTCCACATTCA
* * * * *
96357856 TCACATTGGCCATTCGGCCTT-ATCACATATATGCATGTTCACATTCATCACATTGGCCATTTGG
1 TCACATTAGCCATTCGG-CTTCACCACATATATACATGTCCACATTCATCACATTGGCCATTTGA
* * *
96357920 CCTTATCACCCATATGCATGTTCACACTCATCACATTGGCCATTTGGCCTTATCACATATATGCA
65 CCTTATCACACATATGCATGTTCACACTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
96357985 TGTCCACATTCA
130 TGTCCACATTCA
96357997 TCACATTA
1 TCACATTA
96358005 AGTCCTAAAT
Statistics
Matches: 130, Mismatches: 16, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
140 2 0.02
141 125 0.96
142 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (141 bp):
TCACATTAGCCATTCGGCTTCACCACATATATACATGTCCACATTCATCACATTGGCCATTTGAC
CTTATCACACATATGCATGTTCACACTCATCACATTGGCCATTCGGCCTTATCACACATATGCAT
GTCCACATTCA
Found at i:96357975 original size:22 final size:22
Alignment explanation
Indices: 96357855--96357977 Score: 72
Period size: 22 Copynumber: 5.3 Consensus size: 22
96357845 GTTCACATTC
*
96357855 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
96357877 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
96357901 CATCACATTGGCCATTTGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
** *
96357924 ATCACCCATAT-G-CATGTTCACACTC
1 ATCA--CAT-TGGCCAT-TTGGC-CTT
96357949 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
96357971 ATCACAT
1 ATCACAT
96357978 ATATGCATGT
Statistics
Matches: 74, Mismatches: 15, Indels: 24
0.65 0.13 0.21
Matches are distributed among these distances:
22 21 0.28
23 20 0.27
24 19 0.26
25 14 0.19
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:96362176 original size:14 final size:15
Alignment explanation
Indices: 96362155--96362191 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
96362145 GTGTACTATA
96362155 TCCCATATTGCTTTT
1 TCCCATATTGCTTTT
*
96362170 T-CCATA-TGTTTTT
1 TCCCATATTGCTTTT
96362183 TCCCATATT
1 TCCCATATT
96362192 ACCTCTAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
13 7 0.37
14 10 0.53
15 2 0.11
ACGTcount: A:0.16, C:0.24, G:0.05, T:0.54
Consensus pattern (15 bp):
TCCCATATTGCTTTT
Found at i:96362416 original size:26 final size:26
Alignment explanation
Indices: 96362387--96362437 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96362377 AAATTAATGC
96362387 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96362413 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96362438 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96364527 original size:26 final size:26
Alignment explanation
Indices: 96364498--96364548 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96364488 AAATTAATGC
96364498 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96364524 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96364549 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96366586 original size:26 final size:26
Alignment explanation
Indices: 96366557--96366607 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96366547 AAATTAATGC
96366557 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96366583 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96366608 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96368827 original size:25 final size:26
Alignment explanation
Indices: 96368790--96368841 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
96368780 TCAAACATGC
96368790 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTT-ACTCCTAGGGGT
*
96368816 ATTTCGGT-AATTTACTCCTAGGGGT
1 ATTTAGGTCAATTTACTCCTAGGGGT
96368841 A
1 A
96368842 AAATTAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 2 0.08
25 15 0.62
26 7 0.29
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (26 bp):
ATTTAGGTCAATTTACTCCTAGGGGT
Found at i:96370356 original size:26 final size:26
Alignment explanation
Indices: 96370320--96370403 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
96370310 CATGAAATTC
96370320 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
96370346 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
96370372 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
96370398 TTATCA
1 TTATCA
96370404 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:96375206 original size:12 final size:12
Alignment explanation
Indices: 96375189--96375231 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
96375179 AGTACTACGT
96375189 CGGCCTCGACCA
1 CGGCCTCGACCA
96375201 CGGCCTCGACCA
1 CGGCCTCGACCA
*
96375213 CGGCCTTGACCA
1 CGGCCTCGACCA
96375225 CGGCCTC
1 CGGCCTC
96375232 TTCCCCGAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.14, C:0.49, G:0.26, T:0.12
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:96376906 original size:25 final size:27
Alignment explanation
Indices: 96376869--96376921 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
96376859 TCAAACATGC
96376869 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
96376895 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
96376921 A
1 A
96376922 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:96378439 original size:26 final size:26
Alignment explanation
Indices: 96378403--96378486 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
96378393 CATGAAATTC
96378403 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
96378429 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
96378455 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
96378481 TTATCA
1 TTATCA
96378487 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:96378497 original size:10 final size:10
Alignment explanation
Indices: 96378482--96378506 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
96378472 CCTAACCTAT
96378482 TATCAATTTG
1 TATCAATTTG
96378492 TATCAATTTG
1 TATCAATTTG
96378502 TATCA
1 TATCA
96378507 TAAATTATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (10 bp):
TATCAATTTG
Found at i:96379742 original size:26 final size:26
Alignment explanation
Indices: 96379713--96379763 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96379703 AAATTAATGC
96379713 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96379739 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96379764 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96381819 original size:26 final size:26
Alignment explanation
Indices: 96381790--96381840 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
96381780 AAATTAATGC
*
96381790 TAATTAAACTGAAATATTGATTGTTA
1 TAATTAAACTGAAATATTGAATGTTA
*
96381816 TAATTAAATTGAAATATTGAATGTT
1 TAATTAAACTGAAATATTGAATGTT
96381841 TTCTTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (26 bp):
TAATTAAACTGAAATATTGAATGTTA
Found at i:96383488 original size:27 final size:28
Alignment explanation
Indices: 96383448--96383515 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
96383438 TTTAAAACCC
*
96383448 TAGGGGT-ATATCGGTAA-TTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
96383474 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
96383502 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
96383516 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 7 0.18
27 9 0.23
28 23 0.59
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:96385338 original size:19 final size:18
Alignment explanation
Indices: 96385301--96385344 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
96385291 ATACATACAG
96385301 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
96385318 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
96385337 TACTAATT
1 TAATAATT
96385345 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:96387741 original size:27 final size:28
Alignment explanation
Indices: 96387701--96387768 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
96387691 TTTAAAACCC
*
96387701 TAGGGGT-ATATCGGTAA-TTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
96387727 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
96387755 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
96387769 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 7 0.18
27 9 0.23
28 23 0.59
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:96391379 original size:26 final size:26
Alignment explanation
Indices: 96391350--96391400 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96391340 AAATTAATGC
96391350 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96391376 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96391401 TTTTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96398272 original size:26 final size:26
Alignment explanation
Indices: 96398243--96398293 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96398233 AAATTAATGC
96398243 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96398269 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96398294 TTTTTTATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96400349 original size:26 final size:26
Alignment explanation
Indices: 96400320--96400370 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96400310 AAATTAATGC
96400320 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96400346 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96400371 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96402433 original size:26 final size:26
Alignment explanation
Indices: 96402404--96402454 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96402394 AAATTAATGC
96402404 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96402430 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96402455 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96404509 original size:26 final size:26
Alignment explanation
Indices: 96404480--96404530 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96404470 AAATTAATGC
96404480 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96404506 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96404531 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96406588 original size:26 final size:26
Alignment explanation
Indices: 96406559--96406609 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96406549 AAATTAATGC
96406559 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96406585 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96406610 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96408664 original size:26 final size:26
Alignment explanation
Indices: 96408635--96408685 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96408625 AAATTAATGC
96408635 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96408661 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96408686 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96410744 original size:26 final size:26
Alignment explanation
Indices: 96410715--96410765 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96410705 AAATTAATGC
96410715 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96410741 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96410766 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96412161 original size:130 final size:129
Alignment explanation
Indices: 96411989--96412244 Score: 485
Period size: 130 Copynumber: 2.0 Consensus size: 129
96411979 GTAACAGTGG
*
96411989 TACTAGGCCAGAGCCCTTTTCAGATTATAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGT
1 TACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGT
96412054 ATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCCATTTGGGTAA
66 ATGG-CCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCCATTTGGGTAA
*
96412119 TACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGT
1 TACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGT
96412184 ATGGCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCCATTTGGG
66 ATGGCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCCATTTGGG
96412245 GAGACTACTC
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
129 57 0.46
130 67 0.54
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (129 bp):
TACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGT
ATGGCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCCATTTGGGTAA
Found at i:96412280 original size:21 final size:21
Alignment explanation
Indices: 96412251--96412298 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
96412241 TGGGGAGACT
*
96412251 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACCA-TAC
*
96412272 ACTCCACCCTACCAGCCATAC
1 ACTCCACCCTACCAACCATAC
96412293 ACTCCA
1 ACTCCA
96412299 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCATAC
Found at i:96414045 original size:26 final size:26
Alignment explanation
Indices: 96414009--96414118 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
96413999 ACATGAATTC
*
96414009 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGAAACATTTACCTAACCCA
96414035 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
96414061 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
*
96414087 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
96414113 TTATCA
1 TTATCA
96414119 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:96416060 original size:26 final size:26
Alignment explanation
Indices: 96416031--96416081 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96416021 AAATTAATGC
96416031 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96416057 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96416082 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96420946 original size:27 final size:27
Alignment explanation
Indices: 96420909--96421021 Score: 124
Period size: 27 Copynumber: 4.2 Consensus size: 27
96420899 AGCATGGCTG
* *
96420909 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
96420935 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
* *
96420963 CCA-AAACAAATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
* *
96420990 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
96421017 CCAGA
1 CCAGA
96421022 ACGCTTCCTC
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 5 0.07
27 54 0.72
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:96421017 original size:54 final size:54
Alignment explanation
Indices: 96420913--96421019 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
96420903 TGGCTGCCAG
* *
96420913 AACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACCAA
1 AACAAATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAA
* * * *
96420967 AACAAATATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCATAGCCACCA
1 AACAAATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCA
96421020 GAACGCTTCC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 28 0.61
55 18 0.39
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.18
Consensus pattern (54 bp):
AACAAATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAA
Found at i:96422670 original size:26 final size:26
Alignment explanation
Indices: 96422632--96422715 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
96422622 CATGAAATTC
* *
96422632 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
96422658 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
96422684 TTATCATTGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
96422710 TTATCA
1 TTATCA
96422716 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:96428965 original size:27 final size:26
Alignment explanation
Indices: 96428928--96429042 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
96428918 AGCATGGCTG
* *
96428928 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
96428954 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
96428982 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
96429009 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
96429036 CCAGAAC
1 CCAGAAC
96429043 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:96428992 original size:54 final size:54
Alignment explanation
Indices: 96428928--96429042 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
96428918 AGCATGGCTG
*
96428928 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
96428982 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
96429036 CCAGAAC
1 CCAGAAC
96429043 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:96430701 original size:26 final size:26
Alignment explanation
Indices: 96430663--96430746 Score: 123
Period size: 26 Copynumber: 3.2 Consensus size: 26
96430653 CATGAAATTC
* * *
96430663 TTATCATGAAACATTTACCGAACCCA
1 TTATCATGGAACATTTACCTAACCTA
96430689 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
* *
96430715 TTATCATTGAACATTTGCCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
96430741 TTATCA
1 TTATCA
96430747 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:96431231 original size:26 final size:26
Alignment explanation
Indices: 96431202--96431252 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
96431192 AAATTAATGC
*
96431202 TAATTAAACT-GAAATTTTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96431228 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96431253 TTCTTTTGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.45, C:0.02, G:0.12, T:0.41
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96434007 original size:40 final size:40
Alignment explanation
Indices: 96433948--96434116 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
96433938 CGGGACTTTA
* * *
96433948 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
96433988 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
96434028 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
96434068 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
96434108 CCCGGATAT
1 CCCGGATAT
96434117 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:96441788 original size:40 final size:40
Alignment explanation
Indices: 96441729--96441897 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
96441719 CGGGACTTTA
* * *
96441729 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
96441769 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
96441809 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
96441849 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
96441889 CCCGGATAT
1 CCCGGATAT
96441898 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:96444397 original size:26 final size:26
Alignment explanation
Indices: 96444368--96444418 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96444358 AAATTAATGC
96444368 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96444394 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96444419 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96446479 original size:26 final size:26
Alignment explanation
Indices: 96446450--96446500 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96446440 AAATTAATGC
96446450 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96446476 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96446501 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96448346 original size:14 final size:15
Alignment explanation
Indices: 96448325--96448361 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
96448315 GTGTACTATA
96448325 TCCCATATTGCTTTT
1 TCCCATATTGCTTTT
*
96448340 T-CCATA-TGTTTTT
1 TCCCATATTGCTTTT
96448353 TCCCATATT
1 TCCCATATT
96448362 ACCTTCTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
13 7 0.37
14 10 0.53
15 2 0.11
ACGTcount: A:0.16, C:0.24, G:0.05, T:0.54
Consensus pattern (15 bp):
TCCCATATTGCTTTT
Found at i:96448587 original size:26 final size:26
Alignment explanation
Indices: 96448558--96448608 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96448548 AAATTAATGC
96448558 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96448584 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96448609 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96450454 original size:14 final size:15
Alignment explanation
Indices: 96450433--96450469 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
96450423 GTGTACTATA
96450433 TCCCATATTGCTTTT
1 TCCCATATTGCTTTT
*
96450448 T-CCATA-TGTTTTT
1 TCCCATATTGCTTTT
96450461 TCCCATATT
1 TCCCATATT
96450470 ACCTTCTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
13 7 0.37
14 10 0.53
15 2 0.11
ACGTcount: A:0.16, C:0.24, G:0.05, T:0.54
Consensus pattern (15 bp):
TCCCATATTGCTTTT
Found at i:96450695 original size:26 final size:26
Alignment explanation
Indices: 96450666--96450716 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96450656 AAATTAATGC
96450666 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96450692 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96450717 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96452666 original size:26 final size:26
Alignment explanation
Indices: 96452637--96452687 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96452627 AAATTAATGC
96452637 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96452663 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96452688 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96454959 original size:19 final size:19
Alignment explanation
Indices: 96454935--96455040 Score: 189
Period size: 19 Copynumber: 5.7 Consensus size: 19
96454925 TAATATCTTC
*
96454935 AAGATTGCATATCATATCA
1 AAGATTGCATATCATATCT
96454954 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
96454973 AAGATTG--TATCATATCT
1 AAGATTGCATATCATATCT
96454990 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
96455009 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
96455028 AAGATTGCATATC
1 AAGATTGCATATC
96455041 CTTAAAGATT
Statistics
Matches: 84, Mismatches: 1, Indels: 4
0.94 0.01 0.04
Matches are distributed among these distances:
17 17 0.20
19 67 0.80
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:96455049 original size:55 final size:54
Alignment explanation
Indices: 96454927--96455050 Score: 180
Period size: 55 Copynumber: 2.2 Consensus size: 54
96454917 TTACAAGATA
96454927 ATATCTTCAAGATTGCATATCATATCAAAGATTGCATATCATATCTAAGATTGTATC
1 ATATCTT-AAGATTGCATATCATATCAAAGATTGCATATCATATCTAAGATTG--TC
*
96454984 ATATC-TAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTG-C
1 ATATCTTAAGATTGCATATCATATCAAAGATTGCATATCATATCTAAGATTGTC
96455036 ATATCCTTAAAGATT
1 ATAT-CTT-AAGATT
96455051 ATATTTCCAT
Statistics
Matches: 63, Mismatches: 1, Indels: 8
0.88 0.01 0.11
Matches are distributed among these distances:
52 5 0.08
53 1 0.02
54 1 0.02
55 50 0.79
56 1 0.02
57 5 0.08
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (54 bp):
ATATCTTAAGATTGCATATCATATCAAAGATTGCATATCATATCTAAGATTGTC
Found at i:96455050 original size:36 final size:38
Alignment explanation
Indices: 96454935--96455040 Score: 189
Period size: 36 Copynumber: 2.8 Consensus size: 38
96454925 TAATATCTTC
*
96454935 AAGATTGCATATCATATCAAAGATTGCATATCATATCT
1 AAGATTGCATATCATATCTAAGATTGCATATCATATCT
96454973 AAGATTG--TATCATATCTAAGATTGCATATCATATCT
1 AAGATTGCATATCATATCTAAGATTGCATATCATATCT
96455009 AAGATTGCATATCATATCTAAGATTGCATATC
1 AAGATTGCATATCATATCTAAGATTGCATATC
96455041 CTTAAAGATT
Statistics
Matches: 65, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
36 35 0.54
38 30 0.46
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (38 bp):
AAGATTGCATATCATATCTAAGATTGCATATCATATCT
Found at i:96456507 original size:26 final size:26
Alignment explanation
Indices: 96456478--96456528 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96456468 AAATTAATGC
96456478 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96456504 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96456529 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96458593 original size:26 final size:26
Alignment explanation
Indices: 96458564--96458614 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96458554 AAATTAATGC
96458564 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
96458590 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
96458615 TTCTTTATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:96460688 original size:17 final size:18
Alignment explanation
Indices: 96460646--96460694 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
96460636 AGTTGAAAAG
96460646 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
96460665 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
96460682 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
96460695 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:96461594 original size:39 final size:40
Alignment explanation
Indices: 96461512--96461676 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
96461502 AATTGAATGA
* * ** *
96461512 TATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATTC
* * *
96461551 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTC
* *
96461590 TATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATTC
* *
96461630 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATTC
96461670 TATCCGG
1 TATCCGG
96461677 TTATATTCCG
Statistics
Matches: 104, Mismatches: 16, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
38 3 0.03
39 43 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTC
Found at i:96468667 original size:17 final size:18
Alignment explanation
Indices: 96468625--96468673 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
96468615 AGTTGAAAAG
96468625 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
96468644 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
96468661 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
96468674 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:96469561 original size:40 final size:40
Alignment explanation
Indices: 96469495--96469661 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
96469485 AAATTGAATG
* * *
96469495 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
96469534 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
96469574 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
96469614 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
96469654 ATATCCGG
1 ATATCCGG
96469662 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:96486905 original size:13 final size:13
Alignment explanation
Indices: 96486887--96486911 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
96486877 ACAAACGATA
96486887 AAATTTTCACACT
1 AAATTTTCACACT
96486900 AAATTTTCACAC
1 AAATTTTCACAC
96486912 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (13 bp):
AAATTTTCACACT
Found at i:96488505 original size:27 final size:26
Alignment explanation
Indices: 96488460--96488518 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 26
96488450 AATACATAGT
96488460 TTTAATATGTCTAGTTTA-GGACATTAA
1 TTTAATATGTCTAGTTTAGGGACA--AA
*
96488487 TTTAATGTGTCTA-TCTTAGGGACAAA
1 TTTAATATGTCTAGT-TTAGGGACAAA
96488513 TTTAAT
1 TTTAAT
96488519 TAGCTGTTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 9 0.31
27 15 0.52
28 5 0.17
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.44
Consensus pattern (26 bp):
TTTAATATGTCTAGTTTAGGGACAAA
Found at i:96492923 original size:43 final size:43
Alignment explanation
Indices: 96492876--96493027 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 43
96492866 AGATATGATT
*
96492876 TCGTGTAAGACCACGTCTGGGACATTGGCATCAATTTGAGATA
1 TCGTGTAAGACCACGTCTGGGACACTGGCATCAATTTGAGATA
** * * *
96492919 TCGTGTAAGACCGTGTCTGGGACACTGGCATCGATTAGAGATT
1 TCGTGTAAGACCACGTCTGGGACACTGGCATCAATTTGAGATA
** * * * * *
96492962 TCGTGTAAGACCTTGTCTGGGATAGTAGCATCAATATGTGATTA
1 TCGTGTAAGACCACGTCTGGGACACTGGCATCAATTTGAGA-TA
*
96493006 T-ATGTAAGACCACGTCTGGGAC
1 TCGTGTAAGACCACGTCTGGGAC
96493028 GTTGTCATTG
Statistics
Matches: 89, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
43 87 0.98
44 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGGGACACTGGCATCAATTTGAGATA
Found at i:96497699 original size:22 final size:21
Alignment explanation
Indices: 96497666--96497706 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
96497656 TTATTGTTAT
*
96497666 TTTAAAAAATTATATATAATA
1 TTTAAAAAATTAAATATAATA
*
96497687 TTTATAAATATTAAATATAA
1 TTTA-AAAAATTAAATATAA
96497707 AATATTAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTAAAAAATTAAATATAATA
Found at i:96501438 original size:7 final size:7
Alignment explanation
Indices: 96501426--96501545 Score: 66
Period size: 7 Copynumber: 17.0 Consensus size: 7
96501416 ATTAATTAAT
96501426 CTAAACC
1 CTAAACC
*
96501433 CTAAACTT
1 CTAAAC-C
*
96501441 CTAATCC
1 CTAAACC
*
96501448 CTAATCC
1 CTAAACC
*
96501455 CTAATCC
1 CTAAACC
96501462 CTAAACC
1 CTAAACC
*
96501469 ATAAACC
1 CTAAACC
* *
96501476 TTAAATC
1 CTAAACC
*
96501483 CTAAAAC
1 CTAAACC
*
96501490 ATAAACC
1 CTAAACC
* *
96501497 CT-TACA
1 CTAAACC
*
96501503 CTGAACCC
1 CT-AAACC
*
96501511 CTAACCC
1 CTAAACC
96501518 CT-AACC
1 CTAAACC
96501524 CTTAAACC
1 C-TAAACC
96501532 CT-AACC
1 CTAAACC
96501538 CTTAAACC
1 C-TAAACC
96501546 ATAATCATAA
Statistics
Matches: 88, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
6 13 0.15
7 58 0.66
8 17 0.19
ACGTcount: A:0.38, C:0.38, G:0.01, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:96501558 original size:21 final size:23
Alignment explanation
Indices: 96501534--96501587 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 23
96501524 CTTAAACCCT
96501534 AACCCTTAAACCA-TAA-TCATA
1 AACCCTTAAACCAGTAACTCATA
* *
96501555 AACCTTTAAA-TAGTAACTCATA
1 AACCCTTAAACCAGTAACTCATA
96501577 AA-CCTTAAACC
1 AACCCTTAAACC
96501588 CTTAACCATA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
20 1 0.04
21 18 0.69
22 7 0.27
ACGTcount: A:0.46, C:0.26, G:0.02, T:0.26
Consensus pattern (23 bp):
AACCCTTAAACCAGTAACTCATA
Found at i:96501597 original size:21 final size:21
Alignment explanation
Indices: 96501460--96501597 Score: 52
Period size: 21 Copynumber: 6.6 Consensus size: 21
96501450 AATCCCTAAT
*
96501460 CCCTAAACCATAAACCTTAAA
1 CCCTTAACCATAAACCTTAAA
* * *
96501481 TCCTAAAACATAAACCCTT--A
1 CCCTTAACCATAAA-CCTTAAA
* * * * *
96501501 CACTGAACCCCTAACCCCT-AA
1 CCCTTAA-CCATAAACCTTAAA
* *
96501522 CCCTTAAACCCTAACCCTTAAA
1 CCCTT-AACCATAAACCTTAAA
* *
96501544 -CCATAATCATAAACCTTTAAA
1 CCCTTAACCATAAACC-TTAAA
***
96501565 -TAGTAACTCATAAACCTTAAA
1 CCCTTAAC-CATAAACCTTAAA
96501586 CCCTTAACCATA
1 CCCTTAACCATA
96501598 TGCCCTAAAT
Statistics
Matches: 86, Mismatches: 23, Indels: 16
0.69 0.18 0.13
Matches are distributed among these distances:
20 16 0.19
21 50 0.58
22 20 0.23
ACGTcount: A:0.42, C:0.33, G:0.01, T:0.23
Consensus pattern (21 bp):
CCCTTAACCATAAACCTTAAA
Found at i:96503349 original size:36 final size:36
Alignment explanation
Indices: 96503302--96503374 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
96503292 CTCTTAACAT
96503302 ACTGTTCATATGATCGTTTCGTTACTCTCCTACGAA
1 ACTGTTCATATGATCGTTTCGTTACTCTCCTACGAA
*
96503338 ACTGTTCATATGATCGTTTCGTTACTCTCCTATGAA
1 ACTGTTCATATGATCGTTTCGTTACTCTCCTACGAA
96503374 A
1 A
96503375 ATAGACTCTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (36 bp):
ACTGTTCATATGATCGTTTCGTTACTCTCCTACGAA
Found at i:96504262 original size:40 final size:40
Alignment explanation
Indices: 96504192--96504398 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
96504182 CGGGATTTAA
** * *
96504192 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
96504231 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
96504271 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
96504311 CCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAG-
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
96504350 TCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
96504391 CCGGATAT
1 CCGGATAT
96504399 CATTCGAATA
Statistics
Matches: 138, Mismatches: 25, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
39 27 0.20
40 103 0.75
41 8 0.06
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:96504313 original size:80 final size:79
Alignment explanation
Indices: 96504178--96504398 Score: 259
Period size: 80 Copynumber: 2.8 Consensus size: 79
96504168 GAATCACGTA
* * ** * *
96504178 CCTTCGGGATTTAACCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATAT-GA
1 CCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-
*
96504241 TCACTAGCATAAATG
65 TAACTAGCATAAATG
* * *
96504256 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTTTTGGCCCGGATATAG
1 CCTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
*
96504321 TAACTCGCATAAATG
65 TAACTAGCATAAATG
* * *
96504336 CCTTC-GGATCTTAGTCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGA-CTTAGCCGGATATAGTCAC-TAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
96504399 CATTCGAATA
Statistics
Matches: 122, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
78 12 0.10
79 33 0.27
80 76 0.62
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGT
AACTAGCATAAATG
Found at i:96512383 original size:40 final size:40
Alignment explanation
Indices: 96512313--96512520 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
96512303 CGGGATTTAA
** * *
96512313 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
96512352 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGACTTATC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
96512392 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
96512432 CCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
96512472 CCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
96512513 CCGGATAT
1 CCGGATAT
96512521 CATTCGAATA
Statistics
Matches: 136, Mismatches: 29, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
39 15 0.11
40 93 0.68
41 28 0.21
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:96518702 original size:27 final size:27
Alignment explanation
Indices: 96518661--96518832 Score: 193
Period size: 27 Copynumber: 6.4 Consensus size: 27
96518651 TGGATAAGTT
*
96518661 GTAGAATTACCGAAATTCCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
96518688 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
96518715 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* ** *
96518742 ATAGAATTATTGAAATA-CCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
96518768 GTAGAAATACCAAAATAACCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
96518795 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
96518822 GTAAAATTACC
1 GTAGAATTACC
96518833 ATTTTGCCCC
Statistics
Matches: 120, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
26 19 0.16
27 101 0.84
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:96524037 original size:40 final size:40
Alignment explanation
Indices: 96523972--96524179 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
96523962 TCTTCGGAAT
* ** *
96523972 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
96524011 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
96524051 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
96524091 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
96524131 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
96524171 TTAGCCCGG
1 TTAGCCCGG
96524180 GTATCATTCA
Statistics
Matches: 152, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 3 0.02
40 148 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:96527469 original size:29 final size:31
Alignment explanation
Indices: 96527423--96527535 Score: 146
Period size: 31 Copynumber: 3.7 Consensus size: 31
96527413 TCAGTCTCAA
* *
96527423 CATAT-ACTAGGCCGAAGCC-TTTCATTAAA
1 CATATCACTGGGCCGAAGCCTTTTCATTAAT
96527452 CGAT-T-ACTGGGCCGAAGCCTTTTCA-TAATT
1 C-ATATCACTGGGCCGAAGCCTTTTCATTAA-T
*
96527482 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTAAT
96527513 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
96527536 ACTGTAAACG
Statistics
Matches: 75, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
29 20 0.27
30 9 0.12
31 44 0.59
32 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATTAAT
Found at i:96527495 original size:31 final size:31
Alignment explanation
Indices: 96527457--96527535 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
96527447 TTAAACGATT
96527457 ACTGGGCCGAAGCCTTTTCATAATTCATATC
1 ACTGGGCCGAAGCCTTTTCATAATTCATATC
*
96527488 ACTGGGCCGAAGCCTTTTCATTATTCATATC
1 ACTGGGCCGAAGCCTTTTCATAATTCATATC
96527519 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
96527536 ACTGTAAACG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAATTCATATC
Found at i:96527880 original size:11 final size:11
Alignment explanation
Indices: 96527850--96527894 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
96527840 TGAATACATT
96527850 ATGTGCATATC
1 ATGTGCATATC
*
96527861 A--TACATATC
1 ATGTGCATATC
96527870 ATGTGCATATC
1 ATGTGCATATC
*
96527881 ATGT-CAAATC
1 ATGTGCATATC
96527891 ATGT
1 ATGT
96527895 ACATCAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
9 8 0.28
10 9 0.31
11 12 0.41
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (11 bp):
ATGTGCATATC
Found at i:96527958 original size:25 final size:25
Alignment explanation
Indices: 96527930--96527977 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
96527920 CATAATTAAC
* *
96527930 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAATAGTCATTTTTA
96527955 CCTAGGGGTAAAATAGTCATTTT
1 CCTAGGGGTAAAATAGTCATTTT
96527978 CCATATTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (25 bp):
CCTAGGGGTAAAATAGTCATTTTTA
Found at i:96531364 original size:47 final size:49
Alignment explanation
Indices: 96531147--96531402 Score: 439
Period size: 49 Copynumber: 5.3 Consensus size: 49
96531137 GTATGAGGTA
96531147 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
96531196 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
96531245 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
96531294 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
96531341 TATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
96531388 TATAAATGTGATAAG
1 TATATATGTGATAAG
96531403 TCCCGAAGGG
Statistics
Matches: 199, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 56 0.28
48 5 0.03
49 138 0.69
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:96533763 original size:40 final size:40
Alignment explanation
Indices: 96533699--96533819 Score: 199
Period size: 40 Copynumber: 3.0 Consensus size: 40
96533689 AAGTCTCGAC
*
96533699 GATG-ATCCGGGCTAAGTCCTGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
96533738 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
96533778 GATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
96533818 GA
1 GA
96533820 CGTGTATTCG
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:96537572 original size:47 final size:49
Alignment explanation
Indices: 96537355--96537610 Score: 439
Period size: 49 Copynumber: 5.3 Consensus size: 49
96537345 GTATGAGGTA
96537355 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
96537404 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
96537453 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
96537502 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
96537549 TATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
96537596 TATAAATGTGATAAG
1 TATATATGTGATAAG
96537611 TCCCGAAGGG
Statistics
Matches: 199, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 56 0.28
48 5 0.03
49 138 0.69
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:96540787 original size:2 final size:2
Alignment explanation
Indices: 96540780--96540815 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
96540770 TTGGCTGTCT
96540780 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
96540816 CCTTCGAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:96541597 original size:49 final size:49
Alignment explanation
Indices: 96541470--96541735 Score: 450
Period size: 49 Copynumber: 5.5 Consensus size: 49
96541460 CCCTTCGGGA
* *
96541470 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96541517 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96541564 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96541613 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96541662 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96541711 CTTATCACATATATATACACTTTCA
1 CTTATCACATATATATACACTTTCA
96541736 TGTACAGACT
Statistics
Matches: 207, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 49 0.24
49 157 0.76
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:96543388 original size:2 final size:2
Alignment explanation
Indices: 96543381--96543410 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
96543371 TGCCGAATAC
96543381 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96543411 CATCATCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96543596 original size:2 final size:2
Alignment explanation
Indices: 96543591--96543620 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
96543581 ATATTCGGCA
96543591 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96543621 GACTAAAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96545128 original size:29 final size:29
Alignment explanation
Indices: 96545090--96545192 Score: 93
Period size: 29 Copynumber: 3.6 Consensus size: 29
96545080 GGTTGGAGAA
96545090 CTCGCACACACAGTGCCTCATTTACCGAT
1 CTCGCACACACAGTGCCTCATTTACCGAT
* * * * **
96545119 CTCGCTCACATAGTG-CTCGGTTAAGGGAAT
1 CTCGCACACACAGTGCCTC-ATTTACCG-AT
* *
96545149 -TCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCATTTACCGAT
*
96545177 CTCGCACACATAGTGC
1 CTCGCACACACAGTGC
96545193 TCGGTTAAAG
Statistics
Matches: 56, Mismatches: 14, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
28 5 0.09
29 46 0.82
30 5 0.09
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.24
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCATTTACCGAT
Found at i:96545180 original size:58 final size:58
Alignment explanation
Indices: 96545056--96545208 Score: 238
Period size: 58 Copynumber: 2.7 Consensus size: 58
96545046 GTGCCCACTG
* *
96545056 ACCGATCTCGCACACATAGTGCTCGGTT--GGAGAACTCGCACACACAGTGCCTCATTT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAGG-GAATTCGCACACACAGTGCCTCAATT
*
96545113 ACCGATCTCGCTCACATAGTGCTCGGTTAAGGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAGGGAATTCGCACACACAGTGCCTCAATT
* *
96545171 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAGGGAATTC
96545209 ATACGGTAAT
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
57 27 0.31
58 59 0.67
59 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAGGGAATTCGCACACACAGTGCCTCAATT
Found at i:96545306 original size:43 final size:43
Alignment explanation
Indices: 96545252--96545507 Score: 485
Period size: 43 Copynumber: 6.0 Consensus size: 43
96545242 CATCGGCATT
*
96545252 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
*
96545295 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
*
96545338 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
96545381 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
96545424 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
96545467 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCA
96545508 TAACTGCTCT
Statistics
Matches: 210, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 210 1.00
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.12
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
Found at i:96545593 original size:40 final size:42
Alignment explanation
Indices: 96545486--96545659 Score: 133
Period size: 40 Copynumber: 4.2 Consensus size: 42
96545476 AGGCACGAAG
* * * * * *
96545486 GCCCGAATACATATCACCGGCA-TAACTGCTCTTCGGGACCTG
1 GCCCGGATATATATCACCAGCACGAA-TGCTCTTCGGGACTTA
* * * * * *
96545528 GTCCGG--ATACATCACTAGCATGAATGCTCTTCGAGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
96545568 GCCCGGATGTA-A-CACCAGCACGAATGCTCTACGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * *
96545608 ACCTGGATATATATATCGCCAGCACGAATGCTCTTCGGGACTTA
1 GCCCGG--ATATATATCACCAGCACGAATGCTCTTCGGGACTTA
96545652 GCCCGGAT
1 GCCCGGAT
96545660 CATCGTCGAG
Statistics
Matches: 100, Mismatches: 25, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
40 54 0.54
41 3 0.03
42 12 0.12
43 1 0.01
44 30 0.30
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (42 bp):
GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
Found at i:96546842 original size:2 final size:2
Alignment explanation
Indices: 96546835--96546864 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
96546825 TTGGCTGTCT
96546835 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
96546865 CCTTCGAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:96547646 original size:49 final size:49
Alignment explanation
Indices: 96547519--96547784 Score: 450
Period size: 49 Copynumber: 5.5 Consensus size: 49
96547509 CCCTTCGGGA
* *
96547519 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96547566 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96547613 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96547662 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96547711 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96547760 CTTATCACATATATATACACTTTCA
1 CTTATCACATATATATACACTTTCA
96547785 TGTACAGACT
Statistics
Matches: 207, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 49 0.24
49 157 0.76
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:96555902 original size:42 final size:43
Alignment explanation
Indices: 96555794--96555913 Score: 120
Period size: 42 Copynumber: 2.8 Consensus size: 43
96555784 AACAAGTACA
* * *
96555794 ATGCCGATG-CCCTTAACGTGGTCTTACATGTAATTCAATATCG
1 ATGCCGATGTCCC-AAACATGGTCTTACATGTAAATCAATATCG
** * *
96555837 ATGCCTCTGTCCCAAATAGGGTCTTACATG-AAATCAGATAT-G
1 ATGCCGATGTCCCAAACATGGTCTTACATGTAAATCA-ATATCG
* *
96555879 ATGCCGATGTCCCAGACATGGTCTTATATGTAAAT
1 ATGCCGATGTCCCAAACATGGTCTTACATGTAAAT
96555914 ATCAATCGAG
Statistics
Matches: 61, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
42 30 0.49
43 28 0.46
44 3 0.05
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (43 bp):
ATGCCGATGTCCCAAACATGGTCTTACATGTAAATCAATATCG
Found at i:96558101 original size:39 final size:40
Alignment explanation
Indices: 96558011--96558229 Score: 274
Period size: 39 Copynumber: 5.5 Consensus size: 40
96558001 ACCCAAGTAT
* *
96558011 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
96558050 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
96558090 CTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
96558129 CTTCGGGACTTAGCCCGG-TATAG-CAACTACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
96558171 CTTC-GGACTTAGCCC-GATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
96558209 CTTCGGGACTTAG-CCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
96558230 CATCCGAATA
Statistics
Matches: 159, Mismatches: 10, Indels: 22
0.83 0.05 0.12
Matches are distributed among these distances:
38 17 0.11
39 69 0.43
40 39 0.25
41 20 0.13
42 14 0.09
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:96558142 original size:79 final size:80
Alignment explanation
Indices: 96558011--96558229 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 80
96558001 ACCCAAGTAT
* * *
96558011 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTC-GGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
96558074 TC-ACTA-GCATGAATGC
64 -CAACTATGCACAAATGC
96558090 CTTCGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG-TATAGCA
1 CTTCGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCA
96558154 ACTACTTGCACAAATGC
66 ACTA--TGCACAAATGC
* *
96558171 CTTCGGACTTAGCCC-GATATAGTAACTTGCACAAATGCCTTCGGGACTTAG-CCGGATAT
1 CTTCGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
96558230 CATCCGAATA
Statistics
Matches: 126, Mismatches: 7, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
77 1 0.01
78 16 0.13
79 48 0.38
80 38 0.30
81 23 0.18
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCA
ACTATGCACAAATGC
Found at i:96572167 original size:48 final size:48
Alignment explanation
Indices: 96572102--96572573 Score: 822
Period size: 48 Copynumber: 9.9 Consensus size: 48
96572092 TATATATGTG
*
96572102 TGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96572150 TGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96572198 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96572246 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
96572294 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
96572342 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA-A
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96572389 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
96572437 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96572485 TGTGGTAAAGCCGAATGGC-AAGTGTGAAATTTGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAA-TGTGAAATATGTATGAGATATGTATA
* * *
96572533 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATTTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
96572574 GTGTGTATAT
Statistics
Matches: 404, Mismatches: 17, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
47 48 0.12
48 355 0.88
49 1 0.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:96572816 original size:37 final size:37
Alignment explanation
Indices: 96572714--96572804 Score: 173
Period size: 37 Copynumber: 2.5 Consensus size: 37
96572704 GGAAATATAT
96572714 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96572751 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
96572788 TCCGGGTAAGACCCGAT
1 TCCGGGTAAGACCCGAT
96572805 AGCTACTTGT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:96574145 original size:40 final size:40
Alignment explanation
Indices: 96574099--96574384 Score: 414
Period size: 40 Copynumber: 7.2 Consensus size: 40
96574089 TATATAGCCA
* * *
96574099 GGCTAAGTCCCGAAGAGCATTCGTGCT-GATGTTATATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAG-TGATGTATCCG
* * *
96574139 GGCTAAGTCCCGAAGAGCATTCGTGCT-GATGTTATATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAG-TGATGTATCCG
* *
96574179 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATTCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
96574219 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
*
96574259 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCTG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
* *
96574299 AGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
* * *
96574339 GGTTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
96574379 GGCTAA
1 GGCTAA
96574385 ACCTTGAAGG
Statistics
Matches: 230, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 229 1.00
41 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
Found at i:96574483 original size:29 final size:29
Alignment explanation
Indices: 96574444--96574545 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
96574434 CTTCAACTGA
* * *
96574444 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
** *
96574473 GCACTATGTGTGCGAG-TTTTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
*
96574501 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
96574530 GCACTATGTGTGCGAG
1 GCACTATGTGTGCGAG
96574546 TTCTTTAATC
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 23 0.38
29 38 0.62
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:96574503 original size:57 final size:57
Alignment explanation
Indices: 96574412--96574600 Score: 215
Period size: 57 Copynumber: 3.3 Consensus size: 57
96574402 GCTGGAGTTA
* * *
96574412 TGAGGCACTGTGTGTGCAAGTTCTTCAA-CTGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTTTTCAATC-GAGCACTATGTGTGCCAGATCAGTAGT
* ** *
96574469 TGAGGCACTATGTGTGCGAGTTTTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTTTTCAATCGAGCACTATGTGTGCCAGATCAGTAGT
* * *
96574526 TGAGGCACTATGTGTGCGAGTTCTTT-AATCGAGCGCTATGTGTGCTAAATCAGTTAG-
1 TGAGGCACTATGTGTGCGAGTT-TTTCAATCGAGCACTATGTGTGCCAGATCAG-TAGT
* *
96574583 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
96574601 AGTGTGTTTC
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
56 14 0.12
57 94 0.82
58 6 0.05
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTTTTCAATCGAGCACTATGTGTGCCAGATCAGTAGT
Found at i:96574554 original size:29 final size:28
Alignment explanation
Indices: 96574416--96574570 Score: 134
Period size: 28 Copynumber: 5.5 Consensus size: 28
96574406 GAGTTATGAG
* * * *
96574416 GCACTGTGTGTGCAAGTTCTTCAACTGA
1 GCACTATGTGTGCGAGTTCTTTAATTGA
* * ** *
96574444 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTCTTTAATTGA
*
96574472 GGCACTATGTGTGCGAGTT-TTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTTT-AATTGA
**
96574501 GCACTATGTGTGCGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATTGA
*
96574529 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATTGA
*
96574558 GCGCTATGTGTGC
1 GCACTATGTGTGC
96574571 TAAATCAGTT
Statistics
Matches: 101, Mismatches: 21, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
28 56 0.55
29 45 0.45
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATTGA
Found at i:96576610 original size:2 final size:2
Alignment explanation
Indices: 96576603--96576628 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
96576593 AAATGGCATA
96576603 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
96576629 GTGTGTGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96577799 original size:48 final size:48
Alignment explanation
Indices: 96577734--96578205 Score: 822
Period size: 48 Copynumber: 9.9 Consensus size: 48
96577724 TATATATGTG
*
96577734 TGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96577782 TGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96577830 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96577878 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
96577926 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
96577974 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA-A
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96578021 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
96578069 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96578117 TGTGGTAAAGCCGAATGGC-AAGTGTGAAATTTGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAA-TGTGAAATATGTATGAGATATGTATA
* * *
96578165 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATTTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
96578206 GTGTGTATAT
Statistics
Matches: 404, Mismatches: 17, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
47 48 0.12
48 355 0.88
49 1 0.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:96578448 original size:37 final size:37
Alignment explanation
Indices: 96578346--96578436 Score: 173
Period size: 37 Copynumber: 2.5 Consensus size: 37
96578336 GGAAATATAT
96578346 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96578383 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
96578420 TCCGGGTAAGACCCGAT
1 TCCGGGTAAGACCCGAT
96578437 AGCTACTTGT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:96579824 original size:40 final size:40
Alignment explanation
Indices: 96579730--96580014 Score: 405
Period size: 40 Copynumber: 7.2 Consensus size: 40
96579720 TATATAGCCA
* * *
96579730 GGCTAAGTCCCGAAGAGCATTCGTGCT-GATGTTATATCC-
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAG-TGATGTATCCG
* * *
96579769 GGCTAAGTCCCGAAGAGCATTCGTGCT-GATGTTATATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAG-TGATGTATCCG
* *
96579809 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATTCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
96579849 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
*
96579889 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCTG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
* *
96579929 AGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
* * *
96579969 GGTTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
96580009 GGCTAA
1 GGCTAA
96580015 ACCTTGAAGG
Statistics
Matches: 229, Mismatches: 15, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 39 0.17
40 189 0.83
41 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
Found at i:96580113 original size:29 final size:29
Alignment explanation
Indices: 96580074--96580175 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
96580064 CTTCAACTGA
* * *
96580074 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
** *
96580103 GCACTATGTGTGCGAG-TTTTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
*
96580131 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
96580160 GCACTATGTGTGCGAG
1 GCACTATGTGTGCGAG
96580176 TTCTTTAATC
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 23 0.38
29 38 0.62
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:96580133 original size:57 final size:57
Alignment explanation
Indices: 96580042--96580230 Score: 215
Period size: 57 Copynumber: 3.3 Consensus size: 57
96580032 GCTGGAGTTA
* * *
96580042 TGAGGCACTGTGTGTGCAAGTTCTTCAA-CTGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTTTTCAATC-GAGCACTATGTGTGCCAGATCAGTAGT
* ** *
96580099 TGAGGCACTATGTGTGCGAGTTTTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTTTTCAATCGAGCACTATGTGTGCCAGATCAGTAGT
* * *
96580156 TGAGGCACTATGTGTGCGAGTTCTTT-AATCGAGCGCTATGTGTGCTAAATCAGTTAG-
1 TGAGGCACTATGTGTGCGAGTT-TTTCAATCGAGCACTATGTGTGCCAGATCAG-TAGT
* *
96580213 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
96580231 AGTGTGTTTC
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
56 14 0.12
57 94 0.82
58 6 0.05
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTTTTCAATCGAGCACTATGTGTGCCAGATCAGTAGT
Found at i:96580184 original size:29 final size:28
Alignment explanation
Indices: 96580046--96580200 Score: 134
Period size: 28 Copynumber: 5.5 Consensus size: 28
96580036 GAGTTATGAG
* * * *
96580046 GCACTGTGTGTGCAAGTTCTTCAACTGA
1 GCACTATGTGTGCGAGTTCTTTAATTGA
* * ** *
96580074 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTCTTTAATTGA
*
96580102 GGCACTATGTGTGCGAGTT-TTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTTT-AATTGA
**
96580131 GCACTATGTGTGCGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATTGA
*
96580159 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATTGA
*
96580188 GCGCTATGTGTGC
1 GCACTATGTGTGC
96580201 TAAATCAGTT
Statistics
Matches: 101, Mismatches: 21, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
28 56 0.55
29 45 0.45
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATTGA
Found at i:96582240 original size:2 final size:2
Alignment explanation
Indices: 96582233--96582272 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
96582223 AAATGGCATA
96582233 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96582273 GTGTGTGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96584084 original size:29 final size:29
Alignment explanation
Indices: 96584051--96584115 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
96584041 GTGACGAGAT
96584051 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
96584080 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
96584109 CGGCACT
1 TGGCACT
96584116 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:96592017 original size:29 final size:29
Alignment explanation
Indices: 96591984--96592048 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
96591974 GTGACGAGAT
96591984 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
96592013 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
96592042 CGGCACT
1 TGGCACT
96592049 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:96594542 original size:48 final size:48
Alignment explanation
Indices: 96594477--96594948 Score: 829
Period size: 48 Copynumber: 9.9 Consensus size: 48
96594467 TATATATGTG
*
96594477 TGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96594525 TGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96594573 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96594621 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
96594669 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
96594717 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA-A
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96594764 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
96594812 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
96594860 TGTGGTAAAGCCGAATGGCTAGTGTGAAATTTGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
96594908 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATTTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
96594949 GTGTGTATAT
Statistics
Matches: 406, Mismatches: 17, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 0.11
48 360 0.89
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:96595143 original size:37 final size:37
Alignment explanation
Indices: 96595089--96595191 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
96595079 GGAAATATAT
*
96595089 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96595126 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
96595163 TCCAGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
96595192 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:96596520 original size:40 final size:40
Alignment explanation
Indices: 96596474--96596759 Score: 423
Period size: 40 Copynumber: 7.2 Consensus size: 40
96596464 TATATAGCCA
* * *
96596474 GGCTAAGTCCCGAAGAGCATTCGTGCT-GATGTTATATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAG-TGATGTATCCG
* * *
96596514 GGCTAAGTCCCGAAGAGCATTCGTGCT-GATGTTATATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAG-TGATGTATCCG
* *
96596554 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATTCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
*
96596594 GGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATGTATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
96596634 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
* *
96596674 AGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
* *
96596714 GGTTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCG
1 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
96596754 GGCTAA
1 GGCTAA
96596760 ACCTTGAAGG
Statistics
Matches: 231, Mismatches: 14, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
40 230 1.00
41 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
Found at i:96596858 original size:29 final size:29
Alignment explanation
Indices: 96596819--96596920 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
96596809 CTTCAACTGA
* * *
96596819 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
** *
96596848 GCACTATGTGTGCGAG-TTTTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
*
96596876 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
96596905 GCACTATGTGTGCGAG
1 GCACTATGTGTGCGAG
96596921 TTCTTTAATC
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 23 0.38
29 38 0.62
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:96596878 original size:57 final size:57
Alignment explanation
Indices: 96596787--96596975 Score: 215
Period size: 57 Copynumber: 3.3 Consensus size: 57
96596777 GCTGGAGTTA
* * *
96596787 TGAGGCACTGTGTGTGCAAGTTCTTCAA-CTGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTTTTCAATC-GAGCACTATGTGTGCCAGATCAGTAGT
* ** *
96596844 TGAGGCACTATGTGTGCGAGTTTTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTTTTCAATCGAGCACTATGTGTGCCAGATCAGTAGT
* * *
96596901 TGAGGCACTATGTGTGCGAGTTCTTT-AATCGAGCGCTATGTGTGCTAAATCAGTTAG-
1 TGAGGCACTATGTGTGCGAGTT-TTTCAATCGAGCACTATGTGTGCCAGATCAG-TAGT
* *
96596958 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
96596976 AGTGTGTTTC
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
56 14 0.12
57 94 0.82
58 6 0.05
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTTTTCAATCGAGCACTATGTGTGCCAGATCAGTAGT
Found at i:96596929 original size:29 final size:28
Alignment explanation
Indices: 96596791--96596945 Score: 134
Period size: 28 Copynumber: 5.5 Consensus size: 28
96596781 GAGTTATGAG
* * * *
96596791 GCACTGTGTGTGCAAGTTCTTCAACTGA
1 GCACTATGTGTGCGAGTTCTTTAATTGA
* * ** *
96596819 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTCTTTAATTGA
*
96596847 GGCACTATGTGTGCGAGTT-TTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTTT-AATTGA
**
96596876 GCACTATGTGTGCGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATTGA
*
96596904 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATTGA
*
96596933 GCGCTATGTGTGC
1 GCACTATGTGTGC
96596946 TAAATCAGTT
Statistics
Matches: 101, Mismatches: 21, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
28 56 0.55
29 45 0.45
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATTGA
Found at i:96598987 original size:2 final size:2
Alignment explanation
Indices: 96598980--96599005 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
96598970 AAATGGCATA
96598980 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
96599006 GTGTGTGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96600178 original size:48 final size:48
Alignment explanation
Indices: 96600113--96600729 Score: 1072
Period size: 48 Copynumber: 12.9 Consensus size: 48
96600103 TATATATGTG
96600113 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
96600161 TGTGGTAAAGCCAAATGGCTACTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96600209 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
96600257 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96600305 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
96600353 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
96600401 TGTGGTAAAGCCAAATGGCTAGTATGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
96600449 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* **
96600497 TGTGGTAAAGACTTATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96600545 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
96600593 TGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
96600641 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
96600689 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
96600730 GTGTGTATAT
Statistics
Matches: 542, Mismatches: 27, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 542 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:96600920 original size:37 final size:37
Alignment explanation
Indices: 96600870--96600972 Score: 152
Period size: 37 Copynumber: 2.8 Consensus size: 37
96600860 GGAAATATAT
* *
96600870 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGACATTATG
* *
96600907 TCCGGGTAAGACCCGATGACTACTTGTGGACATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGACATTATG
* *
96600944 TCCAGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
96600973 GGACTATTCG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGACATTATG
Found at i:96607906 original size:6 final size:6
Alignment explanation
Indices: 96607896--96607925 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
96607886 CACCGTAAGG
*
96607896 GTAACA CTAACA GTAACA GTAACA GTAACA
1 GTAACA GTAACA GTAACA GTAACA GTAACA
96607926 ATACTGGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.20, G:0.13, T:0.17
Consensus pattern (6 bp):
GTAACA
Found at i:96608741 original size:15 final size:15
Alignment explanation
Indices: 96608717--96608754 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
96608707 CTAATTTTCC
*
96608717 CTTTTCTTTTTCTTT
1 CTTTTCTTTTTCCTT
*
96608732 CTTTTTTTTTTCCTT
1 CTTTTCTTTTTCCTT
96608747 C-TTTCTTT
1 CTTTTCTTT
96608755 CCCTGCTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
CTTTTCTTTTTCCTT
Found at i:96608885 original size:16 final size:17
Alignment explanation
Indices: 96608832--96608885 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 17
96608822 ATTAATATAT
* *
96608832 TATAATTATATAATTTA
1 TATAATTATTTACTTTA
* *
96608849 -AT-ATAATTTACTTTT
1 TATAATTATTTACTTTA
96608864 TATAATTATTTAC-TTA
1 TATAATTATTTACTTTA
96608880 TATAAT
1 TATAAT
96608886 AAGTAAATAC
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
15 9 0.31
16 12 0.41
17 8 0.28
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.56
Consensus pattern (17 bp):
TATAATTATTTACTTTA
Found at i:96613943 original size:40 final size:41
Alignment explanation
Indices: 96613899--96614000 Score: 156
Period size: 40 Copynumber: 2.6 Consensus size: 41
96613889 GCTCAACTGC
96613899 CTTCGGGACTTAGCCCGGA-TATAGTAACTCGCACAAATGA
1 CTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGA
* *
96613939 CTTCGGGACTTAGCCC-GATTATAGTAGCTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGA
*
96613979 CTTTGGGACTTAGCCCGG-TTAT
1 CTTCGGGACTTAGCCCGGATTAT
96614001 CATCCGAATA
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
39 2 0.04
40 54 0.95
41 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (41 bp):
CTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGA
Done.