Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 318 of 770
Found at i:97265855 original size:31 final size:33
Alignment explanation
Indices: 97265813--97265886 Score: 100
Period size: 31 Copynumber: 2.3 Consensus size: 33
97265803 TTATTATTAT
*
97265813 TTAAT-ATTTAATTTAAGT-TAAATAGAA-AAA
1 TTAATAATTTAATTTAAGTATAAATAAAATAAA
*
97265843 TTAATAATTTAATTTAAGTATAATTAAAATAAA
1 TTAATAATTTAATTTAAGTATAAATAAAATAAA
*
97265876 TTATTAATTTA
1 TTAATAATTTA
97265887 TTTTCATTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.13
31 13 0.34
32 7 0.18
33 13 0.34
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (33 bp):
TTAATAATTTAATTTAAGTATAAATAAAATAAA
Found at i:97271547 original size:25 final size:25
Alignment explanation
Indices: 97271513--97271562 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
97271503 ATCTAGTTTC
97271513 TTTTTATAATATCTATTTATTTCTA
1 TTTTTATAATATCTATTTATTTCTA
97271538 TTTTTATAATATCTATTTATTTCTA
1 TTTTTATAATATCTATTTATTTCTA
97271563 ATAAATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTTTATAATATCTATTTATTTCTA
Found at i:97271554 original size:15 final size:15
Alignment explanation
Indices: 97271513--97271555 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
97271503 ATCTAGTTTC
97271513 TTTTTATAATATCTA
1 TTTTTATAATATCTA
97271528 --TTTAT--T-TCTA
1 TTTTTATAATATCTA
97271538 TTTTTATAATATCTA
1 TTTTTATAATATCTA
97271553 TTT
1 TTT
97271556 ATTTCTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 4 0.17
11 1 0.04
12 5 0.22
13 5 0.22
14 1 0.04
15 7 0.30
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTTATAATATCTA
Found at i:97271569 original size:21 final size:23
Alignment explanation
Indices: 97271517--97271570 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 23
97271507 AGTTTCTTTT
*
97271517 TATAATATCTATTTATTTCTATTTT
1 TATAATATCTATTTATTTCTA--TA
97271542 TATAATATCTATTTATTTCTA-A
1 TATAATATCTATTTATTTCTATA
97271564 TA-AATAT
1 TATAATAT
97271571 TTATATAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 5 0.18
22 2 0.07
25 21 0.75
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (23 bp):
TATAATATCTATTTATTTCTATA
Found at i:97287649 original size:29 final size:29
Alignment explanation
Indices: 97287607--97287664 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
97287597 TAAATAAATT
97287607 CTTTTTTGGAACTACATAGATCTATGGAA
1 CTTTTTTGGAACTACATAGATCTATGGAA
97287636 CTTTTTTGGAACTACATAGATCTATGGAA
1 CTTTTTTGGAACTACATAGATCTATGGAA
97287665 TCGGTTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (29 bp):
CTTTTTTGGAACTACATAGATCTATGGAA
Found at i:97288842 original size:14 final size:14
Alignment explanation
Indices: 97288823--97288850 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97288813 TATTTACCTT
97288823 CGATCAATATTATC
1 CGATCAATATTATC
97288837 CGATCAATATTATC
1 CGATCAATATTATC
97288851 TTTATCTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
CGATCAATATTATC
Found at i:97289417 original size:23 final size:23
Alignment explanation
Indices: 97289391--97289436 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
97289381 GGGATATTAG
97289391 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
97289414 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
97289437 TCAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (23 bp):
ATATTGACTAGTTATATACGAAC
Found at i:97294109 original size:13 final size:15
Alignment explanation
Indices: 97294091--97294129 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
97294081 GAAGATGGAT
97294091 AAATAAA-AAAA-AG
1 AAATAAATAAAATAG
97294104 AAATAAATAAAATAG
1 AAATAAATAAAATAG
97294119 AATATAAATAA
1 AA-ATAAATAA
97294130 GATAAAGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.30
14 4 0.17
15 4 0.17
16 8 0.35
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (15 bp):
AAATAAATAAAATAG
Found at i:97294809 original size:11 final size:11
Alignment explanation
Indices: 97294793--97294817 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
97294783 GCGATTATTG
97294793 TATTTATTGTA
1 TATTTATTGTA
97294804 TATTTATTGTA
1 TATTTATTGTA
97294815 TAT
1 TAT
97294818 AAATATAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (11 bp):
TATTTATTGTA
Found at i:97295440 original size:21 final size:21
Alignment explanation
Indices: 97295401--97295440 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
97295391 TTTATTTAAA
*
97295401 AATATAAATGATATAGAATAT
1 AATATAAATGAAATAGAATAT
*
97295422 AATATAAATGAAATGGAAT
1 AATATAAATGAAATAGAAT
97295441 TACTGATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30
Consensus pattern (21 bp):
AATATAAATGAAATAGAATAT
Found at i:97295584 original size:14 final size:14
Alignment explanation
Indices: 97295565--97295593 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
97295555 TAGATAAATA
97295565 ATAATCTATATAAC
1 ATAATCTATATAAC
97295579 ATAATCTATATAAC
1 ATAATCTATATAAC
97295593 A
1 A
97295594 AAGTAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTATATAAC
Found at i:97297304 original size:19 final size:19
Alignment explanation
Indices: 97297280--97297319 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
97297270 ATTTTTTTTT
* *
97297280 ATTAGAATCGAAAAGTTTA
1 ATTAGAATAGAAAAGTATA
97297299 ATTAGAATAGAAAAGTATA
1 ATTAGAATAGAAAAGTATA
97297318 AT
1 AT
97297320 AAAAGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.30
Consensus pattern (19 bp):
ATTAGAATAGAAAAGTATA
Found at i:97298839 original size:16 final size:16
Alignment explanation
Indices: 97298818--97298850 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
97298808 TCTTATTCCT
*
97298818 TTGCTACTATAGAATA
1 TTGCTACTATAAAATA
97298834 TTGCTACTATAAAATA
1 TTGCTACTATAAAATA
97298850 T
1 T
97298851 AGAATACCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (16 bp):
TTGCTACTATAAAATA
Found at i:97311618 original size:21 final size:20
Alignment explanation
Indices: 97311578--97311615 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
97311568 TCTTGAGTAA
97311578 GACATTGAGTTTTCTTTTGT
1 GACATTGAGTTTTCTTTTGT
97311598 GACATTGAGTTTTCTTTT
1 GACATTGAGTTTTCTTTT
97311616 TGTTTAACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.11, G:0.18, T:0.55
Consensus pattern (20 bp):
GACATTGAGTTTTCTTTTGT
Found at i:97312615 original size:40 final size:40
Alignment explanation
Indices: 97312488--97312617 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
97312478 ATGCTGGAAA
* *
97312488 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
97312528 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
97312568 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
97312608 TTATATCCGG
1 TTATATCCGG
97312618 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:97314239 original size:15 final size:15
Alignment explanation
Indices: 97314219--97314255 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
97314209 TATAAAATTG
97314219 GTGTCTAGCATGAAC
1 GTGTCTAGCATGAAC
*
97314234 GTGTCTGGCATGAAC
1 GTGTCTAGCATGAAC
*
97314249 ATGTCTA
1 GTGTCTA
97314256 TAGAACCTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (15 bp):
GTGTCTAGCATGAAC
Found at i:97318272 original size:49 final size:49
Alignment explanation
Indices: 97318198--97318443 Score: 276
Period size: 49 Copynumber: 5.0 Consensus size: 49
97318188 GTAGCCGAAG
* * * *
97318198 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * **
97318247 TTATCTGATACACGTAGTAGACTGCACTTAGTACTACACACATGACCTAA
1 CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * *
97318297 CCATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAA
1 CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * * * *
97318347 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * *
97318397 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
97318444 TCACAATAGC
Statistics
Matches: 163, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 79 0.48
50 47 0.29
51 37 0.23
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:97319122 original size:29 final size:30
Alignment explanation
Indices: 97319089--97319148 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
97319079 CCTTTAATAC
97319089 AAACTTTGGCA-AATTACCA-TTTTGCCCCT
1 AAACTTTGGCATAATT-CCACTTTTGCCCCT
* *
97319118 AAACTTTTGCATAATTTCACTTTTGCCCCT
1 AAACTTTGGCATAATTCCACTTTTGCCCCT
97319148 A
1 A
97319149 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCATAATTCCACTTTTGCCCCT
Found at i:97324148 original size:40 final size:40
Alignment explanation
Indices: 97324093--97324237 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
97324083 TGAATGGTAT
*
97324093 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
97324133 CCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTCCCAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * ** *
97324173 CCGGGATT-AGTCCCGAAGGCATTTATGCGAGCTATTATAA
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
97324213 CCGGGCTATGTCCCGAAGGCTTTTG
1 CCGGGTTAAGTCCCGAAGGCATTTG
97324238 AACGAGTCGC
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 84 0.97
41 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:97324244 original size:80 final size:80
Alignment explanation
Indices: 97324091--97324244 Score: 193
Period size: 80 Copynumber: 1.9 Consensus size: 80
97324081 TTTGAATGGT
* * * *
97324091 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAATTCCCGAAGGCATT
1 ATCCGGGATAAGTCCCGAAGGCATTTATGCGAGCTACCAAAACCGGGCTAATTCCCGAAGGCATT
**
97324156 TGTGCGAGTTCCCAA
66 TGAACGAGTTCCCAA
* ** * *
97324171 ATCCGGGATTAGTCCCGAAGGCATTTATGCGAGCTATTATAACCGGGCT-ATGTCCCGAAGGCTT
1 ATCCGGGATAAGTCCCGAAGGCATTTATGCGAGCTACCAAAACCGGGCTAAT-TCCCGAAGGCAT
97324235 TTGAACGAGT
65 TTGAACGAGT
97324245 CGCTATATCC
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
79 2 0.03
80 60 0.97
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGATAAGTCCCGAAGGCATTTATGCGAGCTACCAAAACCGGGCTAATTCCCGAAGGCATT
TGAACGAGTTCCCAA
Found at i:97327256 original size:50 final size:49
Alignment explanation
Indices: 97327159--97327389 Score: 293
Period size: 49 Copynumber: 4.7 Consensus size: 49
97327149 TTGGTACGCA
* * *
97327159 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC-GATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACTATCTGATACACG
* *
97327207 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACTATCTGATACACG
* * * * * *
97327257 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CTATCTGATACACG
* * * *
97327308 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACTATCTGATACACG
97327357 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
97327390 TCACAATAGC
Statistics
Matches: 156, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
48 30 0.19
49 45 0.29
50 43 0.28
51 38 0.24
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACTATCTGATACACG
Found at i:97327366 original size:100 final size:98
Alignment explanation
Indices: 97327150--97327389 Score: 329
Period size: 100 Copynumber: 2.4 Consensus size: 98
97327140 CGAAGCTATT
* * * * *
97327150 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGATACACGTAGTAGCC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGATACACATAGTAGCC
* *
97327215 TGCACTTAGTACTACACACATGACCTAACCATC
66 TGCACTTAGTACTACACACACGACCTAACAATC
* * * *
97327248 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTA
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATC-GATACACATAGTA
**
97327313 GCCTGCACTTAGTACTACACATGCGACC-AACAATC
63 GCCTGCACTTAGTACTACACACACGACCTAACAATC
97327348 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
97327390 TCACAATAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
98 35 0.28
99 4 0.03
100 50 0.40
101 35 0.28
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (98 bp):
TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGATACACATAGTAGCC
TGCACTTAGTACTACACACACGACCTAACAATC
Found at i:97332560 original size:45 final size:45
Alignment explanation
Indices: 97332496--97332669 Score: 217
Period size: 45 Copynumber: 3.8 Consensus size: 45
97332486 TGTAACCCGC
*
97332496 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
*
97332541 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
97332587 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
97332634 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
97332670 ATCTCAACCA
Statistics
Matches: 110, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 36 0.33
46 33 0.30
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:97332662 original size:93 final size:92
Alignment explanation
Indices: 97332504--97332671 Score: 300
Period size: 93 Copynumber: 1.8 Consensus size: 92
97332494 GCCCATAAGT
*
97332504 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
97332569 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
*
97332596 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
97332661 CGAGTTCGGAT
65 CGAGCTCGGAT
97332672 CTCAACCATC
Statistics
Matches: 72, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 27 0.38
93 45 0.62
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:97339076 original size:30 final size:30
Alignment explanation
Indices: 97339018--97339078 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97339008 TTCCCGAGCC
*
97339018 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATACAAAAGTT
* * * *
97339048 TAGGGGCAAAATTGTAATTTTACCAAAGTT
1 TAGGGGCAAAAGTGTAAATATACAAAAGTT
97339078 T
1 T
97339079 GAGTTAATGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATACAAAAGTT
Found at i:97339893 original size:64 final size:64
Alignment explanation
Indices: 97339813--97339984 Score: 170
Period size: 67 Copynumber: 2.7 Consensus size: 64
97339803 AGACATTATG
* *
97339813 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAAAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAAAGAGCTACGAGATAA
* * * * * *
97339877 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAAAGAGCTACGAGA
97339941 TAA
62 TAA
* * * *
97339944 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGT
97339985 GTACAAGAGA
Statistics
Matches: 86, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
63 9 0.10
64 23 0.27
65 4 0.05
66 18 0.21
67 32 0.37
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAAAGAGCTACGAGATAA
Found at i:97351770 original size:31 final size:32
Alignment explanation
Indices: 97351710--97351774 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
97351700 TGTTGGTTTT
97351710 AAACTCTGGTGATGGAGGGATCCCACATCGGG
1 AAACTCTGGTGATGGAGGGATCCCACATCGGG
97351742 AAACTCTGGTGATGGAGGGAT-CCACATCGGG
1 AAACTCTGGTGATGGAGGGATCCCACATCGGG
97351773 AA
1 AA
97351775 GCTAATAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 12 0.36
32 21 0.64
ACGTcount: A:0.28, C:0.20, G:0.34, T:0.18
Consensus pattern (32 bp):
AAACTCTGGTGATGGAGGGATCCCACATCGGG
Found at i:97352765 original size:27 final size:26
Alignment explanation
Indices: 97352721--97352772 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
97352711 CTCGCTGCAA
*
97352721 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
97352748 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
97352773 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:97352842 original size:26 final size:27
Alignment explanation
Indices: 97352812--97352871 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
97352802 CACATTATAT
*
97352812 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
97352838 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
97352865 ATATCTG
1 ATATCTG
97352872 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:97352849 original size:32 final size:32
Alignment explanation
Indices: 97352788--97352850 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
97352778 CTCGCTGCAA
* * *
97352788 TCTGGTGGCTTCGCCACATTATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
* *
97352820 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
97352851 GTGACTTCGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.37
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:97359711 original size:43 final size:43
Alignment explanation
Indices: 97359641--97359818 Score: 284
Period size: 43 Copynumber: 4.1 Consensus size: 43
97359631 GTTAAATCCC
*
97359641 GCAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCATGCCTA
* * *
97359684 GCAAGCTTCTTGCCGGTGATGTGTATTCGGGCCTTCATGCCTA
1 GCAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCATGCCTA
*
97359727 GCAGGCTTCGTACCGGTGATGTATATTCGGGCCTTCATGCCTA
1 GCAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCATGCCTA
* * *
97359770 GTAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCATGCCTA
97359813 GCAGGC
1 GCAGGC
97359819 GTAATACCGG
Statistics
Matches: 122, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 122 1.00
ACGTcount: A:0.13, C:0.25, G:0.31, T:0.30
Consensus pattern (43 bp):
GCAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCATGCCTA
Found at i:97366533 original size:22 final size:23
Alignment explanation
Indices: 97366490--97366543 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 23
97366480 TCCACTTGTA
97366490 AGAGCTTACTGTTCTCAACTCG-T
1 AGAGCTTACTG-TCTCAACTCGTT
*
97366513 ATGAGCTTACTG-CTCAGCTCGTT
1 A-GAGCTTACTGTCTCAACTCGTT
97366536 AGAGCTTA
1 AGAGCTTA
97366544 TCGTTTTAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 15 0.54
23 3 0.11
24 10 0.36
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (23 bp):
AGAGCTTACTGTCTCAACTCGTT
Found at i:97366603 original size:25 final size:26
Alignment explanation
Indices: 97366549--97366610 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 26
97366539 GCTTATCGTT
*
97366549 TTAGCTCAATAA--AGCTTAGTGTCCA
1 TTAGCTCAA-AAGGAGCTTACTGTCCA
*
97366574 TTAGCTCAAAAGGAGCTTACTGTTCA
1 TTAGCTCAAAAGGAGCTTACTGTCCA
*
97366600 -TAGCTCGAAAG
1 TTAGCTCAAAAG
97366611 AGCAAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 2 0.06
25 19 0.59
26 11 0.34
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (26 bp):
TTAGCTCAAAAGGAGCTTACTGTCCA
Found at i:97372620 original size:29 final size:28
Alignment explanation
Indices: 97372586--97372687 Score: 109
Period size: 29 Copynumber: 3.5 Consensus size: 28
97372576 AATCGATCAC
*
97372586 GCACACTTAGTGCCATGTGATTTAAGCTT
1 GCACACTTAGTGCCATAT-ATTTAAGCTT
* * *
97372615 GCACACATAGTGCCGTATAATTTAA-ATT
1 GCACACTTAGTGCCATAT-ATTTAAGCTT
97372643 CGCACACTTAGTGCCATACT-TTTCAAGCTT
1 -GCACACTTAGTGCCATA-TATTT-AAGCTT
97372673 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
97372688 ATCTTGTCAC
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
28 5 0.08
29 53 0.87
30 3 0.05
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (28 bp):
GCACACTTAGTGCCATATATTTAAGCTT
Found at i:97375674 original size:25 final size:24
Alignment explanation
Indices: 97375646--97375692 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
97375636 ATAATCTATT
*
97375646 TCATGTCACAAAACAAACCATAACA
1 TCATCTCA-AAAACAAACCATAACA
* *
97375671 TCATCTCAAAATCACACCATAA
1 TCATCTCAAAAACAAACCATAA
97375693 TATGCCAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.49, C:0.30, G:0.02, T:0.19
Consensus pattern (24 bp):
TCATCTCAAAAACAAACCATAACA
Found at i:97376510 original size:43 final size:43
Alignment explanation
Indices: 97376438--97376520 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
97376428 AATCATAAGA
*
97376438 CAATGCCAATGTCCCAGAAATGGTATTACATGTAATCACAATG
1 CAATGCCAATGTCCCAGAAATAGTATTACATGTAATCACAATG
* *
97376481 CAATGCCAATGTCCCAGACATAGTCTTACATGTAATCACA
1 CAATGCCAATGTCCCAGAAATAGTATTACATGTAATCACA
97376521 TCTCGATAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.25
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGAAATAGTATTACATGTAATCACAATG
Found at i:97390022 original size:40 final size:40
Alignment explanation
Indices: 97389967--97390108 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 40
97389957 TATTCGAATG
*
97389967 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
97390007 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
** * *
97390047 ATATTTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
97390087 ATATCC-GGCTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
97390109 TACTTGGGTT
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 13 0.14
40 76 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:97391943 original size:29 final size:28
Alignment explanation
Indices: 97391902--97391981 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 28
97391892 GACTGTAAGA
97391902 GTGATTGGGCCTAGTGGGCCATAT-AGAT
1 GTGATTGGGCCTAGTGGGCCATATGA-AT
*
97391930 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAGTGGGCCATATGAAT
*
97391959 GAGATTGGGCCTAGTGGGCCATA
1 GTGATTGGGCCTAGTGGGCCATA
97391982 ATCGTGTATG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
28 22 0.47
29 24 0.51
30 1 0.02
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.28
Consensus pattern (28 bp):
GTGATTGGGCCTAGTGGGCCATATGAAT
Found at i:97395703 original size:16 final size:15
Alignment explanation
Indices: 97395684--97395722 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
97395674 CGGCAAATCC
*
97395684 CGAAAAGTCGAAATGT
1 CGAAAAGT-AAAATGT
97395700 CGAAAAGGTAAAATGT
1 CGAAAA-GTAAAATGT
97395716 CGAAAAG
1 CGAAAAG
97395723 ATGAAAGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 18 0.86
17 2 0.10
ACGTcount: A:0.49, C:0.10, G:0.26, T:0.15
Consensus pattern (15 bp):
CGAAAAGTAAAATGT
Found at i:97395981 original size:28 final size:28
Alignment explanation
Indices: 97395948--97396034 Score: 104
Period size: 28 Copynumber: 3.1 Consensus size: 28
97395938 GACTATAAAA
*
97395948 GTGATTGGGCCTAGTGGGTCATAT-AGAT
1 GTGATTGGGCCTAGTGGGCCATATGA-AT
* *
97395976 GTGATTTGGGCGTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAGTGGGCCATATGAAT
* *
97396005 GAGATTGGGCCTAGTGGGCCATAAGAAT
1 GTGATTGGGCCTAGTGGGCCATATGAAT
97396033 GT
1 GT
97396035 ATGTGGACTT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
28 26 0.53
29 22 0.45
30 1 0.02
ACGTcount: A:0.24, C:0.11, G:0.36, T:0.29
Consensus pattern (28 bp):
GTGATTGGGCCTAGTGGGCCATATGAAT
Found at i:97396719 original size:11 final size:11
Alignment explanation
Indices: 97396703--97396728 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
97396693 ATTGCATGTA
97396703 TGATATTATTG
1 TGATATTATTG
97396714 TGATATTATTG
1 TGATATTATTG
97396725 TGAT
1 TGAT
97396729 GTGGGCTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:97399633 original size:43 final size:44
Alignment explanation
Indices: 97399586--97399688 Score: 124
Period size: 42 Copynumber: 2.4 Consensus size: 44
97399576 ATCGATTCGA
* *
97399586 GATTTACGTGTAAGACCATGCCTGGGATA-TCAGCATC-ATATTT
1 GATTTACATGTAAGACCATGCCTGGGACAGT-AGCATCGATATTT
* * *
97399629 GATTT-CATGTAAGACCCTGTCTGGGACAGTGGCATCGATATTT
1 GATTTACATGTAAGACCATGCCTGGGACAGTAGCATCGATATTT
97399672 GA-TTACATGTAAGACCA
1 GATTTACATGTAAGACCA
97399689 CGTCAGGGAC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
42 26 0.51
43 25 0.49
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (44 bp):
GATTTACATGTAAGACCATGCCTGGGACAGTAGCATCGATATTT
Found at i:97399698 original size:43 final size:42
Alignment explanation
Indices: 97399618--97399706 Score: 119
Period size: 43 Copynumber: 2.1 Consensus size: 42
97399608 TGGGATATCA
* *
97399618 GCATCATATTTGATTTCATGTAAGACCCTGTCTGGGACAG-TG
1 GCATCATATTTGATTACATGTAAGACCCTGTCAGGGAC-GTTG
97399660 GCATCGATATTTGATTACATGTAAGACCAC-GTCAGGGACGTTG
1 GCATC-ATATTTGATTACATGTAAGACC-CTGTCAGGGACGTTG
97399703 GCAT
1 GCAT
97399707 TGTACAAGCT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
42 6 0.14
43 35 0.83
44 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
GCATCATATTTGATTACATGTAAGACCCTGTCAGGGACGTTG
Found at i:97405098 original size:78 final size:80
Alignment explanation
Indices: 97404999--97405181 Score: 214
Period size: 78 Copynumber: 2.3 Consensus size: 80
97404989 ACGACTCGCT
* ** * *
97404999 CAAATGCCTTCGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGCTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCCG
*
97405062 G-TTTAGTAACTT-GCA
64 GATATAGTAACTTAGCA
* **
97405077 CAAATGCCTTCGGGCTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
*
97405142 TATAGTCACTTAGCA
66 TATAGTAACTTAGCA
97405157 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
97405182 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.54
79 20 0.22
80 18 0.20
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
TATAGTAACTTAGCA
Found at i:97405181 original size:40 final size:39
Alignment explanation
Indices: 97404992--97405181 Score: 154
Period size: 39 Copynumber: 4.8 Consensus size: 39
97404982 GGATATAACG
* ** * *
97404992 ACTCGCTCAAATGCCTTC-GGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
97405031 ACTCGCACGAATGCCTTCGGGACTTAACCCGG-TTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
97405070 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
97405109 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
97405149 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
97405182 CATCATTCGA
Statistics
Matches: 120, Mismatches: 22, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
38 13 0.11
39 53 0.44
40 46 0.38
41 8 0.07
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:97411474 original size:30 final size:30
Alignment explanation
Indices: 97411438--97411538 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
97411428 GACAAGATTG
* * *
97411438 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
97411468 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
97411496 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
97411525 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
97411539 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:97411550 original size:29 final size:28
Alignment explanation
Indices: 97411467--97411542 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
97411457 AAAATTGTAC
* *
97411467 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
97411495 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
97411524 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
97411543 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:97419361 original size:30 final size:30
Alignment explanation
Indices: 97419325--97419425 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
97419315 GACAAGATTG
* * *
97419325 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
97419355 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
97419383 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
97419412 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
97419426 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:97419437 original size:29 final size:28
Alignment explanation
Indices: 97419354--97419429 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
97419344 AAAATTGTAC
* *
97419354 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
97419382 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
97419411 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
97419430 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:97423469 original size:45 final size:44
Alignment explanation
Indices: 97423310--97423479 Score: 166
Period size: 45 Copynumber: 3.7 Consensus size: 44
97423300 TGAGCATCCG
* ***
97423310 AACTTGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAA-CCCCA
* * *
97423356 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGCATCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAAC----C--CCA
97423403 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACCCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAACCCCA
*
97423448 AGCTCGTTGAGTTGAGTCCGAGTTCACTTAGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
97423480 GGCGGGTTAC
Statistics
Matches: 103, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 34 0.33
46 24 0.23
47 28 0.27
48 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (44 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAACCCCA
Found at i:97427503 original size:44 final size:43
Alignment explanation
Indices: 97427379--97427527 Score: 176
Period size: 43 Copynumber: 3.5 Consensus size: 43
97427369 CTAGATGTGT
* * * * *
97427379 TCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGG
1 TCTTACACGAAATCACATATCGATGCGAATGTCCCAGACATGG
* * *
97427422 TCTTACACGAACTCATATA-CAATGCCG-ATGTCCCAGACATGG
1 TCTTACACGAAATCACATATCGATG-CGAATGTCCCAGACATGG
* *
97427464 TCTTACACGTAAATCACAAATCGATGCGAATGTCCCAGACGTGG
1 TCTTACACG-AAATCACATATCGATGCGAATGTCCCAGACATGG
97427508 TCTTACACGAAATCACATAT
1 TCTTACACGAAATCACATAT
97427528 TAGAATCCTA
Statistics
Matches: 88, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
42 26 0.30
43 35 0.40
44 27 0.31
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
TCTTACACGAAATCACATATCGATGCGAATGTCCCAGACATGG
Found at i:97427541 original size:44 final size:44
Alignment explanation
Indices: 97427360--97427541 Score: 151
Period size: 44 Copynumber: 4.2 Consensus size: 44
97427350 CTCGTAAAAC
* * * * * * *
97427360 GCCAACGTCCTAGATGTGTTCTTACATGTAATCACATATCG-AT
1 GCCAATGTCCCAGACGTGGTCTTACACGAAATCACATATAGAAT
* * *
97427403 GCCACTGTCCCAGACAG-GGTCTTACACG-AA-CTCATATACAAT
1 GCCAATGTCCCAGAC-GTGGTCTTACACGAAATCACATATAGAAT
* * * *
97427445 GCCGATGTCCCAGACATGGTCTTACACGTAAATCACAAATCG-AT
1 GCCAATGTCCCAGACGTGGTCTTACACG-AAATCACATATAGAAT
*
97427489 GCGAATGTCCCAGACGTGGTCTTACACGAAATCACATATTAGAAT
1 GCCAATGTCCCAGACGTGGTCTTACACGAAATCACATA-TAGAAT
*
97427534 -CCTATGTC
1 GCCAATGTC
97427542 ATGACATATG
Statistics
Matches: 108, Mismatches: 23, Indels: 15
0.74 0.16 0.10
Matches are distributed among these distances:
41 6 0.06
42 28 0.26
43 29 0.27
44 38 0.35
45 7 0.06
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (44 bp):
GCCAATGTCCCAGACGTGGTCTTACACGAAATCACATATAGAAT
Found at i:97428653 original size:13 final size:13
Alignment explanation
Indices: 97428635--97428659 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97428625 ACAAACGATA
97428635 AAATTTTCACACG
1 AAATTTTCACACG
97428648 AAATTTTCACAC
1 AAATTTTCACAC
97428660 ATATAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:97434995 original size:49 final size:49
Alignment explanation
Indices: 97434866--97435173 Score: 489
Period size: 49 Copynumber: 6.4 Consensus size: 49
97434856 CCCTTCAGGA
* *
97434866 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97434913 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97434960 CTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97435009 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97435058 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97435107 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97435156 CTTATCACATATATATAC
1 CTTATCACATATATATAC
97435174 CTCATACAAA
Statistics
Matches: 243, Mismatches: 14, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 47 0.19
49 195 0.80
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:97439795 original size:47 final size:47
Alignment explanation
Indices: 97439673--97439803 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 47
97439663 GTGTGCATGA
* *
97439673 TACCTTGATTTGGCTACGGGCAATGGTATAGGTATTTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCAATGGTATAGGTA-CTCAGAGAGAAGT
** * * *
97439721 TACCTTGATTTGGCTACGGGCCGTGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCAATGGTATAGGTACTCAGAGAGAAGT
* * *
97439768 TACCTTGATTTGTCTACGAGAAATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCAATGGTATAGGTACT
97439804 TATCGATTGT
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
47 39 0.55
48 32 0.45
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCAATGGTATAGGTACTCAGAGAGAAGT
Found at i:97440563 original size:22 final size:22
Alignment explanation
Indices: 97440526--97440581 Score: 55
Period size: 23 Copynumber: 2.6 Consensus size: 22
97440516 TGGATATGGT
97440526 ATGAATTGTGTA--TATTG-ACG
1 ATGAATTG-GTACCTATTGTACG
* *
97440546 ATGATTTGGCTACCTATTGTATG
1 ATGAATTGG-TACCTATTGTACG
97440569 ATGAATTGGTACC
1 ATGAATTGGTACC
97440582 ATGTTGATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 1 0.03
20 9 0.31
22 9 0.31
23 10 0.34
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (22 bp):
ATGAATTGGTACCTATTGTACG
Found at i:97443513 original size:12 final size:12
Alignment explanation
Indices: 97443496--97443526 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
97443486 ACTCATCACT
97443496 TTTTCTTGATCA
1 TTTTCTTGATCA
*
97443508 TTTTCTTGTTCA
1 TTTTCTTGATCA
97443520 TTTTCTT
1 TTTTCTT
97443527 TCCTTTCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.16, G:0.06, T:0.68
Consensus pattern (12 bp):
TTTTCTTGATCA
Found at i:97443603 original size:19 final size:18
Alignment explanation
Indices: 97443579--97443614 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
97443569 CTCACACTCG
97443579 TTTTCAATTTCTTCTTTTT
1 TTTTCAATTT-TTCTTTTT
*
97443598 TTTTCACTTTTTCTTTT
1 TTTTCAATTTTTCTTTT
97443615 CTCAACTCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTCAATTTTTCTTTTT
Found at i:97446241 original size:48 final size:48
Alignment explanation
Indices: 97446161--97446255 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
97446151 GGGTTATGTG
* * * *
97446161 TGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATATT
1 TGATCCCATGTAAGACCATATCTAGGAAATGGCATTGCCATCAATATT
*
97446209 TGATCCCATGTAAGACCATATCTGGGAAATGGCATTGCCATCAATAT
1 TGATCCCATGTAAGACCATATCTAGGAAATGGCATTGCCATCAATAT
97446256 GAGACATCGT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATATCTAGGAAATGGCATTGCCATCAATATT
Found at i:97450158 original size:13 final size:13
Alignment explanation
Indices: 97450140--97450168 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
97450130 TTTTGTTTAA
97450140 TTAGTTAATTAGT
1 TTAGTTAATTAGT
97450153 TTAGTTAATTAGT
1 TTAGTTAATTAGT
97450166 TTA
1 TTA
97450169 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:97455437 original size:29 final size:29
Alignment explanation
Indices: 97455402--97455475 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
97455392 GTTGTGAGAT
* *
97455402 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
97455431 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
97455460 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
97455476 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:97462870 original size:2 final size:2
Alignment explanation
Indices: 97462863--97462896 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
97462853 AGTATAGTTG
*
97462863 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97462897 TCGGCCATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:97463571 original size:29 final size:29
Alignment explanation
Indices: 97463536--97463609 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
97463526 GTTGTGAGAT
* *
97463536 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
97463565 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
97463594 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
97463610 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:97467006 original size:6 final size:6
Alignment explanation
Indices: 97466995--97467039 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
97466985 TCCTCTTATC
* * *
97466995 TTTTTA TTTTTA TTTTTA TTTTTC TTTTTC TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
97467040 CAATTTTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.11, C:0.07, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:97467028 original size:24 final size:24
Alignment explanation
Indices: 97466993--97467039 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
97466983 AATCCTCTTA
*
97466993 TCTTTTTATTTTTATTTTTATTTT
1 TCTTTTTATTTTTATTTTCATTTT
*
97467017 TCTTTTTCTTTTTATTTTCATTT
1 TCTTTTTATTTTTATTTTCATTT
97467040 CAATTTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.81
Consensus pattern (24 bp):
TCTTTTTATTTTTATTTTCATTTT
Found at i:97467046 original size:30 final size:31
Alignment explanation
Indices: 97466993--97467059 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
97466983 AATCCTCTTA
* **
97466993 TCTTTTTATTTTTATTTTTATTTT-TCT-TTT
1 TCTTTTTATTTTCATTTCAATTTTAT-TATTT
97467023 TCTTTTTATTTTCATTTCAATTTTATTATTT
1 TCTTTTTATTTTCATTTCAATTTTATTATTT
97467054 TCTTTT
1 TCTTTT
97467060 GAAAGATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.78
Consensus pattern (31 bp):
TCTTTTTATTTTCATTTCAATTTTATTATTT
Found at i:97468914 original size:21 final size:21
Alignment explanation
Indices: 97468876--97468915 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
97468866 AGAGCACCAA
*
97468876 GAGCTAAAAAGAGCCAAAAAC
1 GAGCTAAAAAGAGACAAAAAC
* *
97468897 GAGCTAAAAGGGGACAAAA
1 GAGCTAAAAAGAGACAAAA
97468916 CAGACCAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.15, G:0.25, T:0.05
Consensus pattern (21 bp):
GAGCTAAAAAGAGACAAAAAC
Found at i:97469962 original size:13 final size:13
Alignment explanation
Indices: 97469944--97469972 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
97469934 TTTAGTTTAA
97469944 TTAGTTAATTAGT
1 TTAGTTAATTAGT
97469957 TTAGTTAATTAGT
1 TTAGTTAATTAGT
97469970 TTA
1 TTA
97469973 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:97472354 original size:48 final size:47
Alignment explanation
Indices: 97472280--97472496 Score: 229
Period size: 48 Copynumber: 4.5 Consensus size: 47
97472270 GTGTGCTAGA
97472280 GTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGAGCCAGT
* * * *
97472328 GTAAGACCATGTCTGGGACATAGCATCGGCCTCAATATGCGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGAGCCAGT
* * * * ** * *
97472376 GTAAGACCATGTTTGGAACATGGCGTCGGTATTGTTAT-ATGTGTCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCA-CATTATGA-GAGCCAGT
* *
97472424 GTAAGACCATGTCTGTGACATGGCATCGGCACTGATGTATGAGAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCAC--AT-TATGAGAGCCAGT
*
97472474 GTAAGACCTTGTCTGGGACATGG
1 GTAAGACCATGTCTGGGACATGG
97472497 TATCAGCATT
Statistics
Matches: 135, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
48 104 0.77
49 1 0.01
50 29 0.21
51 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (47 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGAGCCAGT
Found at i:97478276 original size:48 final size:48
Alignment explanation
Indices: 97478204--97478298 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
97478194 GGGTTATGTG
* * *
97478204 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATT
1 TGATCCAATGTAAGACAATATCTGGGACATGGCATTGGCATCGATATT
*
97478252 TGATCCAATGTAAGACAATATCTGGGATATGGCATTGGCATCGATAT
1 TGATCCAATGTAAGACAATATCTGGGACATGGCATTGGCATCGATAT
97478299 GAAACATCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (48 bp):
TGATCCAATGTAAGACAATATCTGGGACATGGCATTGGCATCGATATT
Found at i:97478311 original size:48 final size:48
Alignment explanation
Indices: 97478210--97478315 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 48
97478200 TGTGTGATCC
* * **
97478210 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATTTGATCCA
1 CATGTAAGACAATATCTGGGACATGGCATTGGCATCGATA-TTGAAACA
*
97478259 -ATGTAAGACAATATCTGGGATATGGCATTGGCATCGATA-TGAAACA
1 CATGTAAGACAATATCTGGGACATGGCATTGGCATCGATATTGAAACA
97478305 TCATGTAAGAC
1 -CATGTAAGAC
97478316 CATAGCTAGG
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
46 5 0.10
48 45 0.90
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (48 bp):
CATGTAAGACAATATCTGGGACATGGCATTGGCATCGATATTGAAACA
Found at i:97483206 original size:40 final size:39
Alignment explanation
Indices: 97483149--97483311 Score: 177
Period size: 40 Copynumber: 4.1 Consensus size: 39
97483139 TGAATGATAC
* * *
97483149 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-TTATAT
* *
97483189 CTGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGTTATAT
* * *
97483229 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGT--TATAT
* *
97483269 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
97483308 CCGG
1 CCGG
97483312 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 10 0.10
40 86 0.83
41 6 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
Found at i:97488445 original size:20 final size:20
Alignment explanation
Indices: 97488406--97488445 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
97488396 AAACTTCTTC
* * *
97488406 ACTTACTCACTTACTTAAAT
1 ACTTACTAACTTAATCAAAT
97488426 ACTTACTAACTTAATCAAAT
1 ACTTACTAACTTAATCAAAT
97488446 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.38
Consensus pattern (20 bp):
ACTTACTAACTTAATCAAAT
Found at i:97488819 original size:55 final size:54
Alignment explanation
Indices: 97488678--97488931 Score: 293
Period size: 55 Copynumber: 4.7 Consensus size: 54
97488668 ATCCTTTTGA
* *
97488678 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTAT-G-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGA-CCTTGCCTTATAGT
* * *
97488731 AAC-CACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGACC-TTGCCTTATAGT
* *** *
97488785 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCC-T-TAGA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATG-GGACCTTGCCTTATAGT
* * *
97488838 AACCTTGCCAATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
1 AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGACC-TTGCCTTATAGT
*
97488895 AACTTATCAATGCCATGTCTTGACATGGTCTTACATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATG
97488932 ATTTCCTTGC
Statistics
Matches: 166, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
51 2 0.01
52 40 0.24
53 9 0.05
54 12 0.07
55 89 0.54
56 9 0.05
57 5 0.03
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (54 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGACCTTGCCTTATAGT
Found at i:97488892 original size:110 final size:109
Alignment explanation
Indices: 97488678--97488953 Score: 459
Period size: 110 Copynumber: 2.5 Consensus size: 109
97488668 ATCCTTTTGA
* * * **
97488678 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AACC--ACCAA
1 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAA
97488740 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
*
97488785 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTGCCAAT
1 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAA-
97488850 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
97488895 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTT
1 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTT
97488954 CCTAAGGTTC
Statistics
Matches: 159, Mismatches: 6, Indels: 5
0.94 0.04 0.03
Matches are distributed among these distances:
106 1 0.01
107 50 0.31
109 4 0.03
110 104 0.65
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (109 bp):
AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:97496023 original size:16 final size:16
Alignment explanation
Indices: 97496004--97496034 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97495994 CTTCTTCACT
97496004 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
97496020 TACTTACTTACTTAA
1 TACTCACTTACTTAA
97496035 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:97496040 original size:20 final size:20
Alignment explanation
Indices: 97496001--97496040 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
97495991 AAACTTCTTC
* *
97496001 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
97496021 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
97496041 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:97496353 original size:53 final size:54
Alignment explanation
Indices: 97496224--97496477 Score: 238
Period size: 53 Copynumber: 4.8 Consensus size: 54
97496214 GCACGGGTAC
* * * *
97496224 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
97496273 CTTACCATTTCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
97496326 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
97496381 CTTATCAATGCCATGTCTTGACATGGTCTTACATGAT-TTCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
97496433 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
97496478 AAACCCTAAT
Statistics
Matches: 167, Mismatches: 26, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
49 36 0.22
50 1 0.01
52 5 0.03
53 52 0.31
54 35 0.21
55 38 0.23
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:97502161 original size:40 final size:40
Alignment explanation
Indices: 97502011--97502178 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
97502001 CGGAATACAA
* * *
97502011 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
97502051 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
97502091 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
97502131 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
97502171 CCGGATAT
1 CCGGATAT
97502179 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:97503420 original size:18 final size:18
Alignment explanation
Indices: 97503399--97503436 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
97503389 ACTTTTCTTC
* *
97503399 CTTTCTTTTTTTTTTTTT
1 CTTTCTTTGTTTTTGTTT
97503417 CTTTCTTTGTTTTTGTTT
1 CTTTCTTTGTTTTTGTTT
97503435 CT
1 CT
97503437 CTCATGTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (18 bp):
CTTTCTTTGTTTTTGTTT
Found at i:97510187 original size:40 final size:40
Alignment explanation
Indices: 97510037--97510204 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
97510027 CGGAATACAA
* * *
97510037 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
97510077 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
97510117 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
97510157 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
97510197 CCGGATAT
1 CCGGATAT
97510205 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:97511946 original size:27 final size:27
Alignment explanation
Indices: 97511903--97512007 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 27
97511893 TAGGGATGTC
*
97511903 ACAGATAA-TGTGACAGAGTCACCAGAT
1 ACAGATAATTGTG-CAGAGCCACCAGAT
* *
97511930 ACAGATAATCGTGCAGAGCCACCAG-G
1 ACAGATAATTGTGCAGAGCCACCAGAT
97511956 ACAGA-AATATGTGGCAGAGCCACCAGAT
1 ACAGATAAT-TGT-GCAGAGCCACCAGAT
*
97511984 -CAGATAATTGTGCATAGCCACCAG
1 ACAGATAATTGTGCAGAGCCACCAG
97512008 GATGCTTCCT
Statistics
Matches: 67, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
25 3 0.04
26 19 0.28
27 39 0.58
28 6 0.09
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (27 bp):
ACAGATAATTGTGCAGAGCCACCAGAT
Found at i:97521767 original size:40 final size:40
Alignment explanation
Indices: 97521722--97521889 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
97521712 CGGAATATAA
97521722 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
97521762 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
97521802 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
97521842 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
97521882 CCGGATAT
1 CCGGATAT
97521890 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:97521872 original size:80 final size:80
Alignment explanation
Indices: 97521738--97521887 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
97521728 ATAACCACGT
* *
97521738 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
97521803 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
97521818 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
97521881 CCCGGAT
64 CCCGGAT
97521888 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:97527429 original size:38 final size:38
Alignment explanation
Indices: 97527363--97527488 Score: 173
Period size: 39 Copynumber: 3.3 Consensus size: 38
97527353 TTCTAGCGCG
* * *
97527363 TAGCCTGCGGACCTTAAGTCTGGTTATAATTCCAGCACA
1 TAGCCTGCGGA-CTTAAGTCCGGATATAATTCCAGCATA
97527402 TAGCCTGCGGACTTAAGTCC-GAGTATAATTCCAGCATA
1 TAGCCTGCGGACTTAAGTCCGGA-TATAATTCCAGCATA
* *
97527440 TAGCCTGCGGTCTTTAAGCCCGGATATAATTCCAGCATA
1 TAGCCTGCGGAC-TTAAGTCCGGATATAATTCCAGCATA
97527479 TAGCCTGCGG
1 TAGCCTGCGG
97527489 GTCTTTAAGC
Statistics
Matches: 79, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
37 1 0.01
38 33 0.42
39 43 0.54
40 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (38 bp):
TAGCCTGCGGACTTAAGTCCGGATATAATTCCAGCATA
Found at i:97531771 original size:34 final size:34
Alignment explanation
Indices: 97531706--97531780 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
97531696 AGCCAACGAC
*
97531706 AAAAAGAAAAGAAAGGAAGAGAAGAATAAAAA-CG
1 AAAAAGAAAAGAAA-GAAGAGAAGAAGAAAAATCG
*
97531740 AAAAAGAAAAGAAA-AAGAGAAAGAAAGAAAAATGG
1 AAAAAGAAAAGAAAGAAGAG-AAG-AAGAAAAATCG
97531775 AAAAAG
1 AAAAAG
97531781 GTGGGAAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
32 5 0.14
33 3 0.08
34 21 0.58
35 7 0.19
ACGTcount: A:0.73, C:0.01, G:0.23, T:0.03
Consensus pattern (34 bp):
AAAAAGAAAAGAAAGAAGAGAAGAAGAAAAATCG
Found at i:97531777 original size:16 final size:17
Alignment explanation
Indices: 97531708--97531771 Score: 62
Period size: 16 Copynumber: 3.8 Consensus size: 17
97531698 CCAACGACAA
97531708 AAAGAAAAGAAAGGAAGAG
1 AAAGAAAAGAAA--AAGAG
* * *
97531727 -AAGAATA-AAAACGAA
1 AAAGAAAAGAAAAAGAG
97531742 AAAGAAAAGAAAAAGAG
1 AAAGAAAAGAAAAAGAG
97531759 AAAG-AAAGAAAAA
1 AAAGAAAAGAAAAA
97531772 TGGAAAAAGG
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
15 3 0.08
16 15 0.41
17 13 0.35
18 6 0.16
ACGTcount: A:0.75, C:0.02, G:0.22, T:0.02
Consensus pattern (17 bp):
AAAGAAAAGAAAAAGAG
Found at i:97536148 original size:13 final size:13
Alignment explanation
Indices: 97536130--97536157 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
97536120 AAAAGAGATA
97536130 AAAAAATTAAAAT
1 AAAAAATTAAAAT
97536143 AAAAAATTAAAAT
1 AAAAAATTAAAAT
97536156 AA
1 AA
97536158 CCTTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAAAATTAAAAT
Found at i:97538130 original size:14 final size:13
Alignment explanation
Indices: 97538111--97538141 Score: 53
Period size: 13 Copynumber: 2.3 Consensus size: 13
97538101 AAATATCAAC
97538111 TAAAAATCAAAATT
1 TAAAAATC-AAATT
97538125 TAAAAATCAAATT
1 TAAAAATCAAATT
97538138 TAAA
1 TAAA
97538142 CTAAAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (13 bp):
TAAAAATCAAATT
Found at i:97544761 original size:10 final size:10
Alignment explanation
Indices: 97544742--97544791 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
97544732 TGAAGTTCTA
97544742 AAAGATAAAT
1 AAAGATAAAT
97544752 ACAA-ATAAAT
1 A-AAGATAAAT
*
97544762 AAAGATAATT
1 AAAGATAAAT
97544772 AAAGATAAAT
1 AAAGATAAAT
97544782 GAAA-ATAAAT
1 -AAAGATAAAT
97544792 CCTAGAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:97545435 original size:18 final size:19
Alignment explanation
Indices: 97545412--97545449 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
97545402 TAATACCTCA
*
97545412 TTCTTTTTT-TTTCTTTTT
1 TTCTTTTTTCTCTCTTTTT
97545430 TTCTTTTTTCTCTCTTTTT
1 TTCTTTTTTCTCTCTTTTT
97545449 T
1 T
97545450 AATTCTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (19 bp):
TTCTTTTTTCTCTCTTTTT
Found at i:97545626 original size:96 final size:97
Alignment explanation
Indices: 97545461--97545647 Score: 313
Period size: 96 Copynumber: 1.9 Consensus size: 97
97545451 ATTCTATTTA
* * * * *
97545461 TTTATTTTTACTTAGGAATATATTGAACCTTTTGATGCGAAGAGAGATGACAGCCAAGCACCCCA
1 TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAACACCCCA
97545526 CCCCAGTTACTCAGCCCAACACATTCCTAATT
66 CCCCAGTTACTCAGCCCAACACATTCCTAATT
*
97545558 TTTATTTTT-CTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAACACCTCA
1 TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAACACCCCA
97545622 CCCCAGTTACTCAGCCCAACACATTC
66 CCCCAGTTACTCAGCCCAACACATTC
97545648 TTAAAAATTA
Statistics
Matches: 84, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
96 75 0.89
97 9 0.11
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (97 bp):
TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAACACCCCA
CCCCAGTTACTCAGCCCAACACATTCCTAATT
Found at i:97546443 original size:6 final size:6
Alignment explanation
Indices: 97546409--97546454 Score: 51
Period size: 6 Copynumber: 7.5 Consensus size: 6
97546399 ATCTGAAAAT
97546409 AATAAA TAAT-AA AATAATA AGAT-AA AATAAA AATAAA AATAAA AAT
1 AATAAA -AATAAA AATAA-A A-ATAAA AATAAA AATAAA AATAAA AAT
97546455 TGGGTTGTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
5 5 0.14
6 22 0.63
7 6 0.17
8 2 0.06
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (6 bp):
AATAAA
Found at i:97550419 original size:29 final size:29
Alignment explanation
Indices: 97550384--97550464 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 29
97550374 GTTGTGAGAT
**
97550384 TGGCACTAAGTGTGCGAGCTTGAATTGCA
1 TGGCACTAAGTGTGCGAGCTTGAATCACA
* *
97550413 TGGCACTAAGTGTGCGAGTTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAATCACA
*
97550442 TGGCACTAAGTGTGCGAGGTTGA
1 TGGCACTAAGTGTGCGAGCTTGA
97550465 TTATTAAGCA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAATCACA
Found at i:97552193 original size:29 final size:29
Alignment explanation
Indices: 97552158--97552238 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 29
97552148 GTTGTGAGAT
**
97552158 TGGCACTAAGTGTGCGAGCTTGAATTGCA
1 TGGCACTAAGTGTGCGAGCTTGAATCACA
* *
97552187 TGGCACTAAGTGTGCGAGTTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAATCACA
*
97552216 TGGCACTAAGTGTGCGAGGTTGA
1 TGGCACTAAGTGTGCGAGCTTGA
97552239 TTATTAAGCA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAATCACA
Found at i:97559948 original size:29 final size:29
Alignment explanation
Indices: 97559871--97559942 Score: 108
Period size: 29 Copynumber: 2.5 Consensus size: 29
97559861 GTTGTGAGAT
* * **
97559871 TGGCACTAAGTGTGCGAGCTTGAATTGCA
1 TGGCACTAAGTGTGCGAGTTTAAATCACA
97559900 TGGCACTAAGTGTGCGAGTTTAAATCACA
1 TGGCACTAAGTGTGCGAGTTTAAATCACA
97559929 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
97559943 ATAGTTGATT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTTAAATCACA
Found at i:97566750 original size:24 final size:24
Alignment explanation
Indices: 97566723--97566808 Score: 100
Period size: 24 Copynumber: 3.5 Consensus size: 24
97566713 TTCTTGCAGG
*
97566723 GTTTTGGTTTGGGGAAACATTTAA
1 GTTTGGGTTTGGGGAAACATTTAA
* * * *
97566747 GTTTGGGTTTGGAGATACGTGGTTAG
1 GTTTGGGTTTGGGGAAACAT--TTAA
*
97566773 GTTTTGGTTTGGGGAAACATTTAA
1 GTTTGGGTTTGGGGAAACATTTAA
97566797 GTTTGGGTTTGG
1 GTTTGGGTTTGG
97566809 AGATACGTGG
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
24 30 0.61
26 19 0.39
ACGTcount: A:0.19, C:0.03, G:0.36, T:0.42
Consensus pattern (24 bp):
GTTTGGGTTTGGGGAAACATTTAA
Found at i:97566797 original size:50 final size:50
Alignment explanation
Indices: 97566722--97566821 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
97566712 TTTCTTGCAG
97566722 GGTTTTGGTTTGGGGAAACATTTAAGTTTGGGTTTGGAGATACGTGGTTA
1 GGTTTTGGTTTGGGGAAACATTTAAGTTTGGGTTTGGAGATACGTGGTTA
97566772 GGTTTTGGTTTGGGGAAACATTTAAGTTTGGGTTTGGAGATACGTGGTTA
1 GGTTTTGGTTTGGGGAAACATTTAAGTTTGGGTTTGGAGATACGTGGTTA
97566822 TCAGCATTAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.20, C:0.04, G:0.36, T:0.40
Consensus pattern (50 bp):
GGTTTTGGTTTGGGGAAACATTTAAGTTTGGGTTTGGAGATACGTGGTTA
Found at i:97567137 original size:12 final size:12
Alignment explanation
Indices: 97567117--97567158 Score: 57
Period size: 12 Copynumber: 3.3 Consensus size: 12
97567107 TCTATGAACG
97567117 TTTTATATTTTCAA
1 TTTTAT-TTTT-AA
*
97567131 TTTTATTTTTGA
1 TTTTATTTTTAA
97567143 TTTTATTTTTAA
1 TTTTATTTTTAA
97567155 TTTT
1 TTTT
97567159 TATAATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 16 0.62
13 4 0.15
14 6 0.23
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (12 bp):
TTTTATTTTTAA
Found at i:97567217 original size:15 final size:15
Alignment explanation
Indices: 97567192--97567224 Score: 50
Period size: 14 Copynumber: 2.2 Consensus size: 15
97567182 TGTAATTGTG
97567192 AAAATTAAAATAAAAT
1 AAAATTAAAAT-AAAT
97567208 AAAA-TAAAATAAAT
1 AAAATTAAAATAAAT
97567222 AAA
1 AAA
97567225 GAACACACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 6 0.35
16 4 0.24
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAATTAAAATAAAT
Found at i:97567223 original size:4 final size:5
Alignment explanation
Indices: 97567192--97567224 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
97567182 TGTAATTGTG
97567192 AAAATT AAAAT AAAAT AAAAT AAAAT -AAAT AAA
1 AAAA-T AAAAT AAAAT AAAAT AAAAT AAAAT AAA
97567225 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.15
5 18 0.69
6 4 0.15
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:97571670 original size:14 final size:14
Alignment explanation
Indices: 97571647--97571677 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
97571637 ATTTTGTGAA
97571647 AAATAAAATAAAAT
1 AAATAAAATAAAAT
*
97571661 AAATAGAATAAAAT
1 AAATAAAATAAAAT
97571675 AAA
1 AAA
97571678 GAACACACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:97575201 original size:9 final size:9
Alignment explanation
Indices: 97575183--97575214 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
97575173 AACTTTGGAT
97575183 CATAACTTA
1 CATAACTTA
*
97575192 CATGACTTA
1 CATAACTTA
97575201 CATAACTTA
1 CATAACTTA
97575210 CATAA
1 CATAA
97575215 ATATATATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.44, C:0.22, G:0.03, T:0.31
Consensus pattern (9 bp):
CATAACTTA
Found at i:97576386 original size:15 final size:15
Alignment explanation
Indices: 97576366--97576398 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
97576356 CACCCCAGTT
97576366 ACAGATACAGA-AATA
1 ACAGATACA-ATAATA
97576381 ACAGATACAATAATA
1 ACAGATACAATAATA
97576396 ACA
1 ACA
97576399 TGCATAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 1 0.06
15 16 0.94
ACGTcount: A:0.61, C:0.15, G:0.09, T:0.15
Consensus pattern (15 bp):
ACAGATACAATAATA
Found at i:97580495 original size:40 final size:40
Alignment explanation
Indices: 97580431--97580621 Score: 172
Period size: 39 Copynumber: 4.8 Consensus size: 40
97580421 GCTACTCGTT
* * * * ***
97580431 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATCACAACCCGCA
*
97580471 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATCACAACCCGCA
* * * * * *
97580511 CAATTGCCTTCGGG-CTTAGCCCAGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATCACAACCCGCA
* * * * *
97580550 CCATTGCCTTCGGG-CTTAGCCCAGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATCACAACCCGCA
* *
97580589 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAACCCGGATATCACAA
97580622 TTCGCACATT
Statistics
Matches: 133, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.66
40 45 0.34
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATATCACAACCCGCA
Found at i:97580549 original size:39 final size:39
Alignment explanation
Indices: 97580467--97580629 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
97580457 TATGGTAACC
* * *
97580467 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCAGATATCACAACT
* *
97580507 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAACT
*
97580546 CGCACCATTGCCTTCGGGCTTAGCCCAGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAACT
* *
97580585 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAACT
97580624 CGCACA
1 CGCACA
97580630 TTCATACACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAACT
Found at i:97585078 original size:22 final size:22
Alignment explanation
Indices: 97585053--97585141 Score: 90
Period size: 22 Copynumber: 4.0 Consensus size: 22
97585043 AACCTTTCTA
*
97585053 TCTACGAAGTTGAGTCGTCCTG
1 TCTACGAAGTTGAGCCGTCCTG
**
97585075 TCTACGGCGTTGAGCCGTCCTG
1 TCTACGAAGTTGAGCCGTCCTG
* *
97585097 TCCATGACA-TTGAGCCGTCCTG
1 TCTACGA-AGTTGAGCCGTCCTG
** *
97585119 TCTACGGCGTTGAACCGTCCTG
1 TCTACGAAGTTGAGCCGTCCTG
97585141 T
1 T
97585142 TGACTTAGTG
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
22 53 1.00
ACGTcount: A:0.15, C:0.29, G:0.27, T:0.29
Consensus pattern (22 bp):
TCTACGAAGTTGAGCCGTCCTG
Found at i:97587113 original size:43 final size:43
Alignment explanation
Indices: 97586989--97587114 Score: 155
Period size: 43 Copynumber: 2.9 Consensus size: 43
97586979 TGTTTGTGGG
* *
97586989 GAAAGCACCGCTAAAGGTCATGTTCTATAGCGGCGTTTGTGGA
1 GAAAGCACCGCTAAAGGTCATGTTCTATAGCGGCATTTTTGGA
* ** * * * *
97587032 AAAAGCGTCTCTAATGGTCATGTTATATAGCGGGATTTTTGTGA
1 GAAAGCACCGCTAAAGGTCATGTTCTATAGCGGCATTTTTG-GA
97587076 GAAA-CACCGCTAAAGGTCATGTTCTATAGCGGCATTTTT
1 GAAAGCACCGCTAAAGGTCATGTTCTATAGCGGCATTTTT
97587115 CCACATAAAC
Statistics
Matches: 66, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
43 61 0.92
44 5 0.08
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
GAAAGCACCGCTAAAGGTCATGTTCTATAGCGGCATTTTTGGA
Found at i:97593830 original size:36 final size:33
Alignment explanation
Indices: 97593749--97593831 Score: 78
Period size: 36 Copynumber: 2.4 Consensus size: 33
97593739 TTTAATTCCA
* *
97593749 TGTTATTTATATTTCATATAATTGCTTTTAAAT
1 TGTTATATATATATCATATAATTGCTTTTAAAT
* *
97593782 TATCTATGTATATAT-ATATATATATGCTTTTTAAACT
1 TGT-TATATATATATCATATA-AT-TGC-TTTTAAA-T
97593819 TGTTATATATATA
1 TGTTATATATATA
97593832 GTTTATTTCC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
33 7 0.17
34 11 0.28
35 3 0.08
36 16 0.40
37 3 0.08
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (33 bp):
TGTTATATATATATCATATAATTGCTTTTAAAT
Found at i:97600200 original size:7 final size:7
Alignment explanation
Indices: 97600180--97600215 Score: 54
Period size: 7 Copynumber: 4.9 Consensus size: 7
97600170 CTTTGAAACC
97600180 TAAAAAA
1 TAAAAAA
97600187 TTAAAAAAA
1 -T-AAAAAA
97600196 TAAAAAA
1 TAAAAAA
97600203 TAAAAAA
1 TAAAAAA
97600210 TAAAAA
1 TAAAAA
97600216 GAAAGAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 19 0.70
8 2 0.07
9 6 0.22
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAAAAA
Found at i:97601386 original size:64 final size:64
Alignment explanation
Indices: 97601313--97601440 Score: 204
Period size: 64 Copynumber: 2.0 Consensus size: 64
97601303 TCATTCATAA
* *
97601313 CACATCTAGTTAGGAGCATTTGATTCATCTCGATCATAGCATCTTAATCATTT-GACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATCTCAATCATAGCATCCTAATCATTTAG-CATAAGCAT
* *
97601377 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTAGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATCTCAATCATAGCATCCTAATCATTTAGCATAAGCAT
97601441 AGATACATGA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
64 58 0.98
65 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATCTCAATCATAGCATCCTAATCATTTAGCATAAGCAT
Found at i:97603502 original size:29 final size:29
Alignment explanation
Indices: 97603351--97603491 Score: 246
Period size: 29 Copynumber: 4.9 Consensus size: 29
97603341 GTGACGAGAT
97603351 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
97603380 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
97603409 TGGCACTAAGTGTGCGTGCTGGAAATTTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
97603438 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
97603467 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
97603492 AATACGACAC
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 107 1.00
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:97603509 original size:87 final size:87
Alignment explanation
Indices: 97603351--97603511 Score: 250
Period size: 87 Copynumber: 1.9 Consensus size: 87
97603341 GTGACGAGAT
** * * *
97603351 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
97603416 AAGTGTGCGTGCTGGAAATTTA
66 AAGTGTGCGTGCTGGAAATTTA
*
97603438 TGGCACTAAGTGTGCGTGCTGGAAATATTTGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
**
97603503 GGGTGTGCG
66 AAGTGTGCG
97603512 AGTTCGGAGG
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 66 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.27
Consensus pattern (87 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
AAGTGTGCGTGCTGGAAATTTA
Found at i:97603527 original size:87 final size:87
Alignment explanation
Indices: 97603351--97603568 Score: 235
Period size: 87 Copynumber: 2.5 Consensus size: 87
97603341 GTGACGAGAT
** * * *
97603351 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
* **
97603416 AAGTGTGCGTGCTGGAAATTTA
66 AAGTGTGCGAGCTGGAAAGGTA
*
97603438 TGGCACTAAGTGTGCGTGCTGGAAATATTTGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
** * *
97603503 GGGTGTGCGAGTTCGG-AGGGTA
66 AAGTGTGCGAGCT-GGAAAGGTA
** * *
97603525 TGGCACTGTGTGTGCGAGCT-TAAAT-TACGTGGCACTAAGTGTGC
1 TGGCACTAAGTGTGCGTGCTGGAAATATA--TGGCACTAAGTGTGC
97603569 GAAATCGAGT
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
85 1 0.01
86 4 0.04
87 103 0.94
88 2 0.02
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (87 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
AAGTGTGCGAGCTGGAAAGGTA
Found at i:97605203 original size:131 final size:131
Alignment explanation
Indices: 97604966--97605487 Score: 773
Period size: 131 Copynumber: 4.0 Consensus size: 131
97604956 GGGTGTTACA
* *
97604966 GCGAATCTTGCCTCCCTAACCAGTAGTGGAGTAGATTGAAGCCACCATCCTATCTCCCTAAGTAG
1 GCGAATCTTGCCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAG
* * *
97605031 TAGTGGAGTAGGCTAAAGATTGCAAATCTTGTCTCCCTGAAGTTGTAGTGGAACAGATCGAAGAC
66 TAGTGGAGTAGGCTAAAGATTACAGATCTTGTCTCCTTGAAGTTGTAGTGGAACAGATCGAAGAC
97605096 G
131 G
* * *
97605097 GTGAATCTTGCTTCCTTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAG
1 GCGAATCTTGCCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAG
* * *
97605162 TAGTGGAGTAGGCTAAAGATTCCAGATCTTGTCTCCTTGAAGTTGTAGTGCAACAGATCAAAGAC
66 TAGTGGAGTAGGCTAAAGATTACAGATCTTGTCTCCTTGAAGTTGTAGTGGAACAGATCGAAGAC
97605227 G
131 G
* *
97605228 GCGAATCTTTCCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCAGCATCCTATCTCCCTAAGCAG
1 GCGAATCTTGCCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAG
* * * *
97605293 TAGTGGAGTAGACTAAAGATTACAGATCTTGTCTCCTTGAAGTTGCAGTGGAACAGATCGAACAT
66 TAGTGGAGTAGGCTAAAGATTACAGATCTTGTCTCCTTGAAGTTGTAGTGGAACAGATCGAAGAC
97605358 G
131 G
* * * *
97605359 ACGAATCTTGCCTCCTTAACCAGTAGTGGAGTAGATTAAAGCCACCATCCTATCTCCCTAAGCAG
1 GCGAATCTTGCCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAG
* * * * *
97605424 TAGTGGAGTAGGC-CAA-ATTACAGATCTTATCT-CTCT-AAATAGTAGTGGAGCAGATCGAAGA
66 TAGTGGAGTAGGCTAAAGATTACAGATCTTGTCTCCT-TGAAGTTGTAGTGGAACAGATCGAAGA
97605485 CG
130 CG
97605487 G
1 G
97605488 TAAGCCTTAA
Statistics
Matches: 352, Mismatches: 38, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
128 23 0.07
129 16 0.05
130 2 0.01
131 311 0.88
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (131 bp):
GCGAATCTTGCCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAG
TAGTGGAGTAGGCTAAAGATTACAGATCTTGTCTCCTTGAAGTTGTAGTGGAACAGATCGAAGAC
G
Found at i:97605294 original size:42 final size:42
Alignment explanation
Indices: 97604977--97605300 Score: 134
Period size: 42 Copynumber: 7.5 Consensus size: 42
97604967 CGAATCTTGC
* * *
97604977 CTCCCTAACCAGTAGTGGAGTAGATTGAAGCCACCATCCTAT
1 CTCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGCATCCTAT
* * ** * *** * *
97605019 CTCCCTAAGTAGTAGTGGAGTAGGCTAAAGATTGCAAATCTTGT
1 CTCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGC--ATCCTAT
** * * ** *
97605063 CTCCCTGAAGTTGTAGTGGAACAGATCGAAGACGGTGAAT-CT-T
1 CTCCCT-AAGCAGTAGTGGAGCAGATTGAAG-C-CAGCATCCTAT
* * *
97605106 GCTTCCTTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTAT
1 -C-TCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGCATCCTAT
* ** * * *
97605150 CTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTCCAG-ATCTTGT
1 CTCCCTAAGCAGTAGTGGAGCAGATTGAAG---CCAGCATCCTAT
* ** * * ** * * *
97605194 CTCCTTGAAGTTGTAGTGCAACAGATCAAAGACGGCGAAT-CTTT
1 CTCCCT-AAGCAGTAGTGGAGCAGATTGAAGCCAGC--ATCCTAT
*
97605238 CCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCAGCATCCTAT
1 -CTCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGCATCCTAT
97605281 CTCCCTAAGCAGTAGTGGAG
1 CTCCCTAAGCAGTAGTGGAG
97605301 TAGACTAAAG
Statistics
Matches: 198, Mismatches: 66, Indels: 36
0.66 0.22 0.12
Matches are distributed among these distances:
42 74 0.37
43 8 0.04
44 65 0.33
45 49 0.25
47 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (42 bp):
CTCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGCATCCTAT
Found at i:97605538 original size:88 final size:87
Alignment explanation
Indices: 97605438--97605747 Score: 444
Period size: 88 Copynumber: 3.5 Consensus size: 87
97605428 GGAGTAGGCC
* ** * *
97605438 AAATTACAGATCTTATCTCTCTAAATAGTAGTGGAGCAGATCGAAGACGGTAAGCCTTAACCCCT
1 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGATGAGCCTTAACCCC-
97605503 TAAGCAGTAGGGTAACAGGCTGA
65 TAAGCAGTAGGGTAACAGGCTGA
*
97605526 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGA-CAAGATCGAAGACGATGAGCCTTACCCCC
1 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGC-AGATCGAAGACGATGAGCCTTAACCCC
* *
97605590 TAAGCAGTAGGGTAATAGACTGA
65 TAAGCAGTAGGGTAACAGGCTGA
* *
97605613 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGATGAGCTTTAACTCCC
1 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGATGAGCCTTAAC-CCC
*
97605678 TAAGTAGTAGGGTAACAGGCT-A
65 TAAGCAGTAGGGTAACAGGCTGA
* * *
97605700 GAAATTATAGATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCAAAGA
1 -AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA
97605748 TAACAAATCT
Statistics
Matches: 201, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
87 80 0.40
88 121 0.60
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (87 bp):
AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGATGAGCCTTAACCCCT
AAGCAGTAGGGTAACAGGCTGA
Found at i:97605553 original size:44 final size:43
Alignment explanation
Indices: 97605503--97605731 Score: 155
Period size: 44 Copynumber: 5.2 Consensus size: 43
97605493 CTTAACCCCT
97605503 TAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTA-AGATCTTATCTCCC
* * * ** * * *
97605547 TAAGCAGTAGTGG--ACAAGATCGAAGACGATGAGCCTTA-CCCCC
1 TAAGCAGTAG-GGTAACAGGCT-GAAAATTAAGA-TCTTATCTCCC
* *
97605590 TAAGCAGTAGGGTAATAGACTGAAAATTACAGATCTTATCTCCC
1 TAAGCAGTAGGGTAACAGGCTGAAAATTA-AGATCTTATCTCCC
* * ** * * *
97605634 TAAGCAGTAGTGG-AACA-GATCGAAGACGATGAGCTTTAACTCCC
1 TAAGCAGTAG-GGTAACAGGCT-GAAAATTAAGATC-TTATCTCCC
* *
97605678 TAAGTAGTAGGGTAACAGGCT-AGAAATTATAGATCTTATCTTCC
1 TAAGCAGTAGGGTAACAGGCTGA-AAATTA-AGATCTTATCTCCC
97605722 TAAGCAGTAG
1 TAAGCAGTAG
97605732 TGGAGCAGAT
Statistics
Matches: 134, Mismatches: 37, Indels: 28
0.67 0.19 0.14
Matches are distributed among these distances:
42 2 0.01
43 37 0.28
44 86 0.64
45 9 0.07
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.24
Consensus pattern (43 bp):
TAAGCAGTAGGGTAACAGGCTGAAAATTAAGATCTTATCTCCC
Found at i:97606311 original size:44 final size:45
Alignment explanation
Indices: 97606204--97606314 Score: 138
Period size: 45 Copynumber: 2.5 Consensus size: 45
97606194 AAGCCATAAA
* * * *
97606204 CCTTATCCCCCTGAAGTTACAGTGGGGAAGGTTGAAGTTACGAGT
1 CCTTATCCCCCTGAAGTTGCAGCGGGGAAGGCTGAAGTTACAAGT
97606249 CCTTA-CCCCTCTGAAGTTGCAGCGGGGCAA-GCTGAAGTTACAAGT
1 CCTTATCCCC-CTGAAGTTGCAGCGGGG-AAGGCTGAAGTTACAAGT
*
97606294 -CTTATCTCCCTGAAGTTGCAG
1 CCTTATCCCCCTGAAGTTGCAG
97606315 TGGAGCAGAC
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
44 20 0.34
45 36 0.62
46 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (45 bp):
CCTTATCCCCCTGAAGTTGCAGCGGGGAAGGCTGAAGTTACAAGT
Found at i:97606946 original size:15 final size:16
Alignment explanation
Indices: 97606926--97606955 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
97606916 AAAGGACAGC
97606926 ACAACAA-AAAGAAAA
1 ACAACAACAAAGAAAA
97606941 ACAACAACAAAGAAA
1 ACAACAACAAAGAAA
97606956 TTCTTTGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.77, C:0.17, G:0.07, T:0.00
Consensus pattern (16 bp):
ACAACAACAAAGAAAA
Done.