Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 319 of 770
Found at i:97621169 original size:29 final size:29
Alignment explanation
Indices: 97621136--97621209 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
97621126 GTGACGAGAT
97621136 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
97621165 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
97621194 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
97621210 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:97621225 original size:29 final size:29
Alignment explanation
Indices: 97621193--97621268 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
97621183 CTGGAAATAT
* *
97621193 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
97621222 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
97621251 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
97621269 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:97621236 original size:58 final size:58
Alignment explanation
Indices: 97621136--97621268 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
97621126 GTGACGAGAT
* * * * * *
97621136 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
97621194 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
97621252 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
97621269 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:97629046 original size:29 final size:29
Alignment explanation
Indices: 97629013--97629086 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
97629003 GTGACGAGAT
97629013 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
97629042 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
97629071 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
97629087 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:97629102 original size:29 final size:29
Alignment explanation
Indices: 97629070--97629145 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
97629060 CTGGAAATAT
* *
97629070 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
97629099 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
97629128 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
97629146 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:97629113 original size:58 final size:58
Alignment explanation
Indices: 97629013--97629145 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
97629003 GTGACGAGAT
* * * * * *
97629013 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
97629071 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
97629129 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
97629146 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:97634520 original size:29 final size:30
Alignment explanation
Indices: 97634488--97634546 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
97634478 ATTTAATACG
97634488 AACTTTGGAAAAATTACACTTTT-CCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
97634517 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
97634547 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:97643243 original size:40 final size:39
Alignment explanation
Indices: 97643180--97643364 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 39
97643170 TCGGATGATA
* * *
97643180 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTAAT
* *
97643220 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTAA-
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT
* *
97643259 ATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTA-TTAT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT
*
97643299 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-AT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT
*
97643338 AACCGGGCTAAGTCCTGAAGGCATTTG
1 -ACCGGGCTAAGTCCCGAAGGCATTTG
97643365 ATCTAATGGC
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 36 0.29
40 87 0.69
41 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAT
Found at i:97643397 original size:79 final size:80
Alignment explanation
Indices: 97643177--97643387 Score: 245
Period size: 79 Copynumber: 2.7 Consensus size: 80
97643167 TGTTCGGATG
*
97643177 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGATCTAGTGGCTATA-TCCGGGCTAAGTCCCGAAGG
*
97643240 CATTCGTGCGAGCTACT
64 CATTCGTGCAAGCTACT
* * ***
97643257 A-AATCCGGGCTAAGCCCCGAAGGCATTTG-TGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGG
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTTGAT-CTAGTGGCTATATCCGGGCTAAGTCCCGAAGG
* *
97643319 CATTTGTGCAAGTTACT
64 CATTCGTGCAAGCTACT
* *
97643336 ATAACCGGGCTAAGTCCTGAAGGCATTTGATCTAATGGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGATCTAGTGGCTATATCCGGGCTAA
97643388 ACTCCGAAGG
Statistics
Matches: 108, Mismatches: 16, Indels: 15
0.78 0.12 0.11
Matches are distributed among these distances:
79 72 0.67
80 33 0.31
81 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGATCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
TTCGTGCAAGCTACT
Found at i:97650133 original size:43 final size:43
Alignment explanation
Indices: 97650072--97650199 Score: 145
Period size: 43 Copynumber: 3.0 Consensus size: 43
97650062 TAGGATTTTT
* * *
97650072 GATATGTTTTCTCATGTAAGACCACATCTGGGATGTTGGCATC
1 GATATGTGTTCTCATGTAAGACCACGTCTGGGAAGTTGGCATC
*
97650115 GATATGTGTTCTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATC
1 GATATGTGTTCTCATGTAAGACCAC-GTCTGGGA-AGTTGGCATC
* * *
97650158 GATATGTGATT-ACATGTAAAACCACGTCTGGGACGTTGGCAT
1 GATATGTG-TTCTCATGTAAGACCACGTCTGGGAAGTTGGCAT
97650200 TATACAATAT
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
42 2 0.03
43 66 0.92
44 4 0.06
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
GATATGTGTTCTCATGTAAGACCACGTCTGGGAAGTTGGCATC
Found at i:97651457 original size:17 final size:17
Alignment explanation
Indices: 97651435--97651489 Score: 110
Period size: 17 Copynumber: 3.2 Consensus size: 17
97651425 ATGTATATTC
97651435 ATGTTTAGGCGTGTAAA
1 ATGTTTAGGCGTGTAAA
97651452 ATGTTTAGGCGTGTAAA
1 ATGTTTAGGCGTGTAAA
97651469 ATGTTTAGGCGTGTAAA
1 ATGTTTAGGCGTGTAAA
97651486 ATGT
1 ATGT
97651490 ATAAATTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 38 1.00
ACGTcount: A:0.29, C:0.05, G:0.29, T:0.36
Consensus pattern (17 bp):
ATGTTTAGGCGTGTAAA
Found at i:97654286 original size:53 final size:54
Alignment explanation
Indices: 97654201--97654404 Score: 194
Period size: 53 Copynumber: 3.8 Consensus size: 54
97654191 TTCCTTTTTA
* * *
97654201 AACTAACCATTGTCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTAT-G
1 AACTTACCAATGTCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAG
* * * * * *
97654254 AACTCACCATTGTCATGCCTTGGCATGGTCTTACATGGGATCTTTGTCTTATAG
1 AACTTACCAATGTCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAG
* * * * * * * *
97654308 TAGCTTATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGTCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAG
* * * * *
97654363 AACTTGCCAATGCCATACCTTGGCATGGTCTTACTTGGTATC
1 AACTTACCAATGTCATGCCTTGACATGGTCTTACATGGTATC
97654405 CTTAAACCCT
Statistics
Matches: 120, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 46 0.38
54 33 0.28
55 41 0.34
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGTCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAG
Found at i:97664352 original size:53 final size:53
Alignment explanation
Indices: 97664292--97664495 Score: 187
Period size: 53 Copynumber: 3.8 Consensus size: 53
97664282 CTTTTTAAAC
* *
97664292 TTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAA
1 TTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* * * * *
97664344 TTCACCATTGCTATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGT
1 TT-ACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-A-A
* * * * * * *
97664400 TTATCGA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTAGCCTTGTAAAA
1 TTA-CCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* * * *
97664453 CTTGCCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 -TTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
97664496 AAACCCTAAT
Statistics
Matches: 118, Mismatches: 27, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
52 2 0.02
53 43 0.36
54 33 0.28
55 36 0.31
56 4 0.03
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (53 bp):
TTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
Found at i:97667770 original size:15 final size:17
Alignment explanation
Indices: 97667746--97667779 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
97667736 GGTAAGGACT
97667746 AAATTGAAAAG-TGATA
1 AAATTGAAAAGATGATA
97667762 AAATT-AAAAGATGATA
1 AAATTGAAAAGATGATA
97667778 AA
1 AA
97667780 TAATTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.24
Consensus pattern (17 bp):
AAATTGAAAAGATGATA
Found at i:97669517 original size:48 final size:46
Alignment explanation
Indices: 97669445--97669760 Score: 285
Period size: 48 Copynumber: 6.6 Consensus size: 46
97669435 TAAAGTACCA
* * * *
97669445 ATGCCATGTCTCTGACATGATCTTACATGAATTCACATATCATCACTG
1 ATGCCATGTCCCAGACATGGTCTTACATGCA--CACATATCATCACTG
* *
97669493 ATGTCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCACTG
1 ATGCCATGTCCCAGACATGGTCTTACA-T-GCACACATATCATCACTG
* *
97669541 ATGCCATGTCCCAAACATGGTCTTACACTGGCACACCTATCATTGC-CT-
1 ATGCCATGTCCCAGACATGGTCTTACA-T-GCACACATATCA-T-CACTG
* * * * *
97669589 ATGTCATGTCCCAGACATGGTCTTACACAAGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTT--ACATGCACACATATCATCACTG
* * *
97669637 ATGCCATGTCCCAGACATGGTCTTACACATGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTT--ACATGCACACATATCATCACTG
* * ** *
97669685 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATTGCCG
1 ATGCCATGTCCCAGACATGGTCTT--ACATGCACACATATCATCACTG
* *
97669733 ATACCATATCCCAGACATGGTCTTACAT
1 ATGCCATGTCCCAGACATGGTCTTACAT
97669761 AGGCACATTT
Statistics
Matches: 239, Mismatches: 21, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
46 4 0.02
47 2 0.01
48 223 0.93
49 4 0.02
50 6 0.03
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACATGCACACATATCATCACTG
Found at i:97669765 original size:48 final size:48
Alignment explanation
Indices: 97669481--97669768 Score: 387
Period size: 48 Copynumber: 6.0 Consensus size: 48
97669471 ATGAATTCAC
* * * * * *
97669481 ATATCATCACTGATGTCATGTCCCAAACATGGTCTTACACTGGCACAC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
* * * * *
97669529 ATATCATCACTGATGCCATGTCCCAAACATGGTCTTACACTGGCACAC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
* * * * *
97669577 CTATCATTGCCTATGTCATGTCCCAGACATGGTCTTACACAAGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
*
97669625 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACATGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
97669673 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
* * * *
97669721 ATATCATTGCCGATACCATATCCCAGACATGGTCTTACATAGGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
97669769 TTAGCACGGT
Statistics
Matches: 219, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 219 1.00
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (48 bp):
ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
Found at i:97671506 original size:57 final size:58
Alignment explanation
Indices: 97671444--97671583 Score: 178
Period size: 57 Copynumber: 2.4 Consensus size: 58
97671434 TGTTACAATT
* *
97671444 AGGATTTAGCTTGGACTGGTAATCCTAATTGAGCTCTTCTGAACATATGTT-ATGGA-A
1 AGGATTTAGCTTGGACTGGTAATCCTAATTAAGCTCTTCTGAACATATGTTGA-AGACA
* * * * *
97671501 AGGATTTAGCCTAGACTAGTAATCCTAATTAAGCTCTTGTGAGCATATGTTGAAGACA
1 AGGATTTAGCTTGGACTGGTAATCCTAATTAAGCTCTTCTGAACATATGTTGAAGACA
*
97671559 A-GATTTAGCTTGGAGTGGTAATCCT
1 AGGATTTAGCTTGGACTGGTAATCCT
97671584 GCTATATGAT
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 67 0.96
58 3 0.04
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (58 bp):
AGGATTTAGCTTGGACTGGTAATCCTAATTAAGCTCTTCTGAACATATGTTGAAGACA
Found at i:97673032 original size:21 final size:21
Alignment explanation
Indices: 97673006--97673058 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
97672996 CGACCTGCAG
97673006 CACGGGCGTGTCCTAGGGTCA
1 CACGGGCGTGTCCTAGGGTCA
97673027 CACGGGCGTGTCCTAGGGTCA
1 CACGGGCGTGTCCTAGGGTCA
97673048 CACGGGCGTGT
1 CACGGGCGTGT
97673059 GTGCCCTGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (21 bp):
CACGGGCGTGTCCTAGGGTCA
Found at i:97673361 original size:38 final size:38
Alignment explanation
Indices: 97673295--97673525 Score: 282
Period size: 38 Copynumber: 6.1 Consensus size: 38
97673285 GGTGTTACAA
97673295 CACTGGCACGAAGCTTGCTAGGCACAGAGCCCAAATAT
1 CACTGGCACGAAGCTTGCTAGGCACAGAGCCCAAATAT
* * ** *
97673333 AACAGGCAAAAAGCCTGCTAGGCACAGAGCCCAAATAT
1 CACTGGCACGAAGCTTGCTAGGCACAGAGCCCAAATAT
* * * *
97673371 CACTGGCCCGAAGCTTGCTGGGCATAAAGCCCAAATAT
1 CACTGGCACGAAGCTTGCTAGGCACAGAGCCCAAATAT
* *
97673409 CACTGGCATGAAGCTTGCTAGGCACAGAGCCCGAATAT
1 CACTGGCACGAAGCTTGCTAGGCACAGAGCCCAAATAT
* * * * **
97673447 CACCGGTACGAAGCCTGCTGGGCACAGAGCCTGAATAT
1 CACTGGCACGAAGCTTGCTAGGCACAGAGCCCAAATAT
* * *
97673485 CACTGACACAAAGCTTGCTAGGCACAGAGCTCAAATAT
1 CACTGGCACGAAGCTTGCTAGGCACAGAGCCCAAATAT
97673523 CAC
1 CAC
97673526 CAGCACAAAG
Statistics
Matches: 158, Mismatches: 35, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 158 1.00
ACGTcount: A:0.32, C:0.28, G:0.23, T:0.16
Consensus pattern (38 bp):
CACTGGCACGAAGCTTGCTAGGCACAGAGCCCAAATAT
Found at i:97673550 original size:114 final size:114
Alignment explanation
Indices: 97673343--97673559 Score: 263
Period size: 114 Copynumber: 1.9 Consensus size: 114
97673333 AACAGGCAAA
* * * * *
97673343 AAGCCTGCTAGGCACAGAGCCCAAATATCACTGGCCCGAAGCTTGCTGGGCATAAAGCCCAAATA
1 AAGCCTGCTAGGCACAGAGCCCAAATATCACTGACACAAAGCTTGCTAGGCACAAAGCCCAAATA
** ** * * * *
97673408 TCACTGGCATGAAGCTTGCTAGGCACAGAGCCCGAATATCACCGGTACG
66 TCACCAGCACAAAGCCTACTAAGAACAGAGCCCGAATATCACCGGTACG
* ** * *
97673457 AAGCCTGCTGGGCACAGAGCCTGAATATCACTGACACAAAGCTTGCTAGGCACAGAGCTCAAATA
1 AAGCCTGCTAGGCACAGAGCCCAAATATCACTGACACAAAGCTTGCTAGGCACAAAGCCCAAATA
*
97673522 TCACCAGCACAAAGCCTACTAAGAACAGAGCTCGAATA
66 TCACCAGCACAAAGCCTACTAAGAACAGAGCCCGAATA
97673560 ATGTTACGTT
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
114 84 1.00
ACGTcount: A:0.33, C:0.28, G:0.23, T:0.16
Consensus pattern (114 bp):
AAGCCTGCTAGGCACAGAGCCCAAATATCACTGACACAAAGCTTGCTAGGCACAAAGCCCAAATA
TCACCAGCACAAAGCCTACTAAGAACAGAGCCCGAATATCACCGGTACG
Found at i:97673559 original size:76 final size:76
Alignment explanation
Indices: 97673404--97673552 Score: 190
Period size: 76 Copynumber: 2.0 Consensus size: 76
97673394 ATAAAGCCCA
* ** * * * * * **
97673404 AATATCACTGGCATGAAGCTTGCTAGGCACAGAGCCCGAATATCACCGGTACGAAGCCTGCTGGG
1 AATATCACTGACACAAAGCTTGCTAGGCACAGAGCCCAAATATCACCAGCACAAAGCCTACTAAG
*
97673469 CACAGAGCCTG
66 AACAGAGCCTG
*
97673480 AATATCACTGACACAAAGCTTGCTAGGCACAGAGCTCAAATATCACCAGCACAAAGCCTACTAAG
1 AATATCACTGACACAAAGCTTGCTAGGCACAGAGCCCAAATATCACCAGCACAAAGCCTACTAAG
97673545 AACAGAGC
66 AACAGAGC
97673553 TCGAATAATG
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
76 61 1.00
ACGTcount: A:0.34, C:0.28, G:0.22, T:0.16
Consensus pattern (76 bp):
AATATCACTGACACAAAGCTTGCTAGGCACAGAGCCCAAATATCACCAGCACAAAGCCTACTAAG
AACAGAGCCTG
Found at i:97682706 original size:23 final size:22
Alignment explanation
Indices: 97682663--97682706 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
97682653 AAAATGTAAA
* *
97682663 TTTACCATTTTTAGCTTACAAC
1 TTTACCACTTTTAGATTACAAC
97682685 TTTACCACTTTTAGATTGACAA
1 TTTACCACTTTTAGATT-ACAA
97682707 AAATATAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (22 bp):
TTTACCACTTTTAGATTACAAC
Found at i:97685970 original size:46 final size:45
Alignment explanation
Indices: 97685912--97686083 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
97685902 TTACTTGTGT
* * * *
97685912 GAGCTAGTGTAAGACATGTCTGGGACATACATCGGCCATATTATGA-
1 GAGCCAGTGTAAGACATATCTGGGACATGCATCGGCCAT-TGA-GAC
97685958 GAGCCAGTGTAAGACCATATCTGGGACATGGCATCGG-CATTGAGAC
1 GAGCCAGTGTAAGA-CATATCTGGGACAT-GCATCGGCCATTGAGAC
* * *
97686004 GAGTGCTAGTGTAAGACGTATCTAGGACATGCATCGGCC-TTGAGAC
1 GA--GCCAGTGTAAGACATATCTGGGACATGCATCGGCCATTGAGAC
*
97686050 GTAAGCCAGTGTAAGACATGTCTGGGACATGCAT
1 G--AGCCAGTGTAAGACATATCTGGGACATGCAT
97686084 AGGCTATGAG
Statistics
Matches: 107, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
45 2 0.02
46 58 0.54
47 29 0.27
48 18 0.17
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATATCTGGGACATGCATCGGCCATTGAGAC
Found at i:97698327 original size:50 final size:49
Alignment explanation
Indices: 97698209--97698435 Score: 251
Period size: 50 Copynumber: 4.6 Consensus size: 49
97698199 CTGATATGCA
* * *
97698209 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATAATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATCATT-GATACACG
* *
97698258 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATCAT-TGATACACG
* * ** *
97698308 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATTGAGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TCATTGA-TACACG
* * * *
97698359 TAGTAGCCTGCACTTAGTACTACACATGCGACTTAA-CAGTATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATCA-T-TGATACACG
*
97698409 TAGTAGCCTGCCCTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
97698436 ATGTACTCAC
Statistics
Matches: 149, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
49 34 0.23
50 75 0.50
51 40 0.27
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATCATTGATACACG
Found at i:97698407 original size:101 final size:99
Alignment explanation
Indices: 97698209--97698435 Score: 287
Period size: 101 Copynumber: 2.3 Consensus size: 99
97698199 CTGATATGCA
* *
97698209 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATAATTCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATTCGGTACACATAGTAGCCTGCACTTA
* * *
97698274 GTACTACACACGTGACCTCACCATCTGATACACG
66 GTACTACACACGCGACCTCAACATATGATACACG
* * **
97698308 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATT-GAGTATGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TAATTCG-GTACACATAGTAGCCTGCAC
* * *
97698372 TTAGTACTACACATGCGA-CTTAACAGTATGGTACACG
63 TTAGTACTACACACGCGACCTCAACA-TATGATACACG
*
97698409 TAGTAGCCTGCCCTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
97698436 ATGTACTCAC
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
99 30 0.27
100 9 0.08
101 72 0.65
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATTCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCAACATATGATACACG
Found at i:97708995 original size:46 final size:46
Alignment explanation
Indices: 97708943--97709064 Score: 127
Period size: 46 Copynumber: 2.7 Consensus size: 46
97708933 CGCCCCTAAG
* *
97708943 TGAACTCAAACTCAAATCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCAAACTCAAATCAACGAGCTCGGACATTCGCATCCATAAA
** * * * *
97708989 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCAAACTCAAATCAACGAGCTCGGACATTCGCATCCATAAA
** * * *
97709035 TGAACTCGGACTCAACTTAACGAGTTCGGA
1 TGAACTCAAACTCAAATCAACGAGCTCGGA
97709065 TGCTCAACCA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (46 bp):
TGAACTCAAACTCAAATCAACGAGCTCGGACATTCGCATCCATAAA
Found at i:97709525 original size:31 final size:30
Alignment explanation
Indices: 97709490--97709550 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97709480 ATTTAATACG
97709490 AACTTTAAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAAA-TACACTTTTGCCCCTA
*** *
97709521 AACTTTTGCATAAATACACTTTTGCCCCTA
1 AACTTTAAAAAAAATACACTTTTGCCCCTA
97709551 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 16 0.62
31 10 0.38
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (30 bp):
AACTTTAAAAAAAATACACTTTTGCCCCTA
Found at i:97713167 original size:40 final size:40
Alignment explanation
Indices: 97713112--97713289 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
97713102 TGGATGATAA
* * *
97713112 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
97713152 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
97713192 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
97713232 CCGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
97713272 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
97713290 TACTTGGCTT
Statistics
Matches: 125, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 16 0.13
40 109 0.87
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:97718739 original size:29 final size:28
Alignment explanation
Indices: 97718705--97718834 Score: 129
Period size: 29 Copynumber: 4.6 Consensus size: 28
97718695 TACTCGATTT
* *
97718705 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-C-ATTTCCAGCA
* ** * *
97718734 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCAT-CATTTCCAGCA
*
97718763 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCAT-CATTTCCAGCA
*
97718792 TGCACACTTAGTGCCAT-ATTTCCAGCA
1 CGCACACTTAGTGCCATCATTTCCAGCA
97718819 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
97718835 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
27 25 0.29
28 2 0.02
29 59 0.69
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCCATCATTTCCAGCA
Found at i:97725665 original size:40 final size:40
Alignment explanation
Indices: 97725607--97725786 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
97725597 CGTTCAAACA
* * ** * *
97725607 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* *
97725647 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
*
97725687 CCTTCGGG-CTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* *
97725726 CCTTC-GG-CTTAGCCCGGATATCACAA-TTGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
97725763 CCTTCGGG-CTTAGCCCGGATATCA
1 CCTTCGGGACTTAGCCCGGATATCA
97725787 CAATCGACAT
Statistics
Matches: 125, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
37 15 0.12
38 37 0.30
39 33 0.26
40 40 0.32
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:97725789 original size:38 final size:38
Alignment explanation
Indices: 97725637--97725792 Score: 233
Period size: 38 Copynumber: 4.1 Consensus size: 38
97725627 TATGGTAACC
* *
97725637 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAA-T
* *
97725677 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACA-AT
97725716 CGCACAATTGCCTTC-GGCTTAGCCCGGATATCACAAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
*
97725753 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
97725791 CG
1 CG
97725793 ACATTCATTC
Statistics
Matches: 106, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
37 15 0.14
38 42 0.40
39 32 0.30
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (38 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
Found at i:97733654 original size:30 final size:34
Alignment explanation
Indices: 97733578--97733682 Score: 120
Period size: 38 Copynumber: 2.8 Consensus size: 34
97733568 ATCACAACTC
*
97733578 GCACAATTGCCTTTGGGCTTAGCCCGGATATCATAGCTT
1 GCACAATTGCCTTCGGGCTTAGCCCGGA-AT-A-A--TT
97733617 GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 GCACAATTGCCTTCGGGCTTAGCCCGGA-AT---AATT
97733655 GCACAATTGCCTTCGGGCTTAGCCCGGA
1 GCACAATTGCCTTCGGGCTTAGCCCGGA
97733683 TATCACAATT
Statistics
Matches: 63, Mismatches: 1, Indels: 5
0.91 0.01 0.07
Matches are distributed among these distances:
38 30 0.48
39 30 0.48
40 1 0.02
41 2 0.03
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.27
Consensus pattern (34 bp):
GCACAATTGCCTTCGGGCTTAGCCCGGAATAATT
Found at i:97733666 original size:38 final size:39
Alignment explanation
Indices: 97733538--97733698 Score: 243
Period size: 39 Copynumber: 4.1 Consensus size: 39
97733528 ATGGTAACCC
* * *
97733538 GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTC
1 GCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTT
* * *
97733578 GCACAATTGCCTTTGGGCTTAGCCCGGATATCATAGCTT
1 GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTT
97733617 GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA-TT
1 GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTT
*
97733655 GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTT
1 GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTT
97733694 GCACA
1 GCACA
97733699 TTCATTCACA
Statistics
Matches: 111, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
38 38 0.34
39 58 0.52
40 15 0.14
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTT
Found at i:97733679 original size:77 final size:79
Alignment explanation
Indices: 97733538--97733687 Score: 250
Period size: 77 Copynumber: 1.9 Consensus size: 79
97733528 ATGGTAACCC
*
97733538 GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTTGGGCTTAGCCC
1 GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
97733603 GGATATCATAGCTT
66 GGATATCATAGCTT
* * *
97733617 GCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAA-TTGCACAATTGCCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
97733680 GGATATCA
66 GGATATCA
97733688 CAATTTGCAC
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 33 0.49
78 18 0.27
79 16 0.24
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.25
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GGATATCATAGCTT
Found at i:97735979 original size:36 final size:36
Alignment explanation
Indices: 97735937--97736010 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
97735927 AAAATGTATG
97735937 CTGTTTTTTTTGTGTGGTATTAAGTGTAAAATTGGC
1 CTGTTTTTTTTGTGTGGTATTAAGTGTAAAATTGGC
97735973 CTGTTTTTTTTGTGTGGTATTAAGTGTAAAATTGGC
1 CTGTTTTTTTTGTGTGGTATTAAGTGTAAAATTGGC
97736009 CT
1 CT
97736011 CAACATAGAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.19, C:0.07, G:0.24, T:0.50
Consensus pattern (36 bp):
CTGTTTTTTTTGTGTGGTATTAAGTGTAAAATTGGC
Found at i:97738047 original size:40 final size:40
Alignment explanation
Indices: 97737988--97738156 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
97737978 CGGGACTTTA
* * *
97737988 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
97738028 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
97738068 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
97738108 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
97738148 CCCGGATAT
1 CCCGGATAT
97738157 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:97739900 original size:27 final size:28
Alignment explanation
Indices: 97739843--97739912 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
97739833 AAACTTGTAC
*
97739843 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
97739871 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
97739898 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
97739913 GACACACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:97747797 original size:27 final size:28
Alignment explanation
Indices: 97747740--97747809 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
97747730 AAACTTGTAC
*
97747740 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
97747768 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
97747795 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
97747810 GACACACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:97757195 original size:19 final size:20
Alignment explanation
Indices: 97757171--97757208 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
97757161 GGTACCACCA
97757171 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
97757190 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
97757209 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:97757597 original size:93 final size:93
Alignment explanation
Indices: 97757438--97757609 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
97757428 GCCCCTAAGT
* * *
97757438 GAACTCGGACTCAACTCAATGAGCTTGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
97757503 CGAGTTCGGATGCTTAGTTACATCTCAC
66 CGAGTTCGGATGCTTAGTTACATCTCAC
* * *
97757531 GAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAATGAACTCAGACTCAACTCA
97757595 ACGAGTTCGGATGCT
65 ACGAGTTCGGATGCT
97757610 CAACCATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCTTAGTTACATCTCAC
Found at i:97757598 original size:46 final size:46
Alignment explanation
Indices: 97757433--97757605 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
97757423 AACCCGCCCC
* * * *
97757433 TAAGTGAACTCGGACTCAACTCAATGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCA
* * * *
97757479 TAAATGAACTCAGACTCAACTCAACGAGTTCGGATGCTTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--C--ATTTGCATCCA
* *
97757527 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
97757572 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97757606 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 5 0.05
46 56 0.54
47 28 0.27
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:97757624 original size:46 final size:45
Alignment explanation
Indices: 97757483--97757624 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
97757473 CATCCATAAA
* *
97757483 TGAACTCAGACTCAACTCAACGAGTTCGGATGCTTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCA---ACCATCT-AG
* * * *
97757530 CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTAG
97757576 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAG
97757622 TGA
1 TGA
97757625 CATGTCACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 33 0.43
47 30 0.39
48 1 0.01
49 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAG
Found at i:97760106 original size:18 final size:17
Alignment explanation
Indices: 97760083--97760117 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
97760073 GATGGGTTGA
97760083 AATGGGCCGTGTGGGCCC
1 AATGGG-CGTGTGGGCCC
*
97760101 AATGGGCTTGTGGGCCC
1 AATGGGCGTGTGGGCCC
97760118 CACACAGGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.11, C:0.26, G:0.43, T:0.20
Consensus pattern (17 bp):
AATGGGCGTGTGGGCCC
Found at i:97770046 original size:23 final size:23
Alignment explanation
Indices: 97770016--97770121 Score: 111
Period size: 20 Copynumber: 5.0 Consensus size: 23
97770006 GCTATACTGA
* *
97770016 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTGTGTGTCGTATT
97770039 TCAGGCACCTTGTGTGTCGTA--
1 TCAGGCACCTTGTGTGTCGTATT
*
97770060 TCAGGCACCTCGTGTGTCG--TT
1 TCAGGCACCTTGTGTGTCGTATT
*
97770081 TCAGG-ACCTCGTGTGTC--ATT
1 TCAGGCACCTTGTGTGTCGTATT
*
97770101 TCAGGCA-CTTATGTGTCGTAT
1 TCAGGCACCTTGTGTGTCGTAT
97770122 ACTGATCAGG
Statistics
Matches: 72, Mismatches: 5, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
20 27 0.38
21 24 0.33
22 2 0.03
23 19 0.26
ACGTcount: A:0.15, C:0.23, G:0.25, T:0.37
Consensus pattern (23 bp):
TCAGGCACCTTGTGTGTCGTATT
Found at i:97770091 original size:20 final size:21
Alignment explanation
Indices: 97770028--97770108 Score: 110
Period size: 21 Copynumber: 3.8 Consensus size: 21
97770018 AGGCACTTTA
*
97770028 TGTGTCGTATTTCAGGCACCTTG
1 TGTGTCG--TTTCAGGCACCTCG
*
97770051 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTTTCAGGCACCTCG
97770072 TGTGTCGTTTCAGG-ACCTCG
1 TGTGTCGTTTCAGGCACCTCG
*
97770092 TGTGTCATTTCAGGCAC
1 TGTGTCGTTTCAGGCAC
97770109 TTATGTGTCG
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
20 19 0.36
21 27 0.51
23 7 0.13
ACGTcount: A:0.14, C:0.25, G:0.27, T:0.35
Consensus pattern (21 bp):
TGTGTCGTTTCAGGCACCTCG
Found at i:97770107 original size:41 final size:43
Alignment explanation
Indices: 97770028--97770108 Score: 112
Period size: 41 Copynumber: 1.9 Consensus size: 43
97770018 AGGCACTTTA
* *
97770028 TGTGTCGTATTTCAGGCACCTTGTGTGTCGTATCAGGCACCTCG
1 TGTGTCG-ATTTCAGGCACCTCGTGTGTCATATCAGGCACCTCG
*
97770072 TGTGTCG-TTTCAGG-ACCTCGTGTGTCATTTCAGGCAC
1 TGTGTCGATTTCAGGCACCTCGTGTGTCATATCAGGCAC
97770109 TTATGTGTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 20 0.59
42 7 0.21
44 7 0.21
ACGTcount: A:0.14, C:0.25, G:0.27, T:0.35
Consensus pattern (43 bp):
TGTGTCGATTTCAGGCACCTCGTGTGTCATATCAGGCACCTCG
Found at i:97771253 original size:46 final size:46
Alignment explanation
Indices: 97771203--97771351 Score: 140
Period size: 53 Copynumber: 3.1 Consensus size: 46
97771193 TGGTTGGACC
97771203 ATGGCATCAATGTGATATGTGATCTGTGTAAGACCATAGCTGGGCT
1 ATGGCATCAATGTGATATGTGATCTGTGTAAGACCATAGCTGGGCT
* * * * * *
97771249 ATGGCATCAGAGATATGTGATTACGTGCTTCCGTATAAGACCATATCTGGGAT
1 ATGGCATC----A-ATGTGA-TATGTG-ATCTGTGTAAGACCATAGCTGGGCT
* *
97771302 ATGGCATCAGTGTGATATGTGAT-TCGTGTAAGACCATGGCT-GGCT
1 ATGGCATCAATGTGATATGTGATCT-GTGTAAGACCATAGCTGGGCT
97771347 ATGGC
1 ATGGC
97771352 TACGGTGTGT
Statistics
Matches: 81, Mismatches: 14, Indels: 17
0.72 0.12 0.15
Matches are distributed among these distances:
45 8 0.10
46 22 0.27
47 5 0.06
48 5 0.06
49 1 0.01
50 1 0.01
51 6 0.07
52 5 0.06
53 28 0.35
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (46 bp):
ATGGCATCAATGTGATATGTGATCTGTGTAAGACCATAGCTGGGCT
Found at i:97771379 original size:15 final size:15
Alignment explanation
Indices: 97771359--97771392 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
97771349 GGCTACGGTG
97771359 TGTGATATGTGACTA
1 TGTGATATGTGACTA
97771374 TGTGATATGTGACTA
1 TGTGATATGTGACTA
97771389 TGTG
1 TGTG
97771393 CAAGACCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.24, C:0.06, G:0.29, T:0.41
Consensus pattern (15 bp):
TGTGATATGTGACTA
Found at i:97771382 original size:7 final size:8
Alignment explanation
Indices: 97771359--97771392 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
97771349 GGCTACGGTG
97771359 TGTGA-TA
1 TGTGACTA
97771366 TGTGACTA
1 TGTGACTA
97771374 TGTGA-TA
1 TGTGACTA
97771381 TGTGACTA
1 TGTGACTA
97771389 TGTG
1 TGTG
97771393 CAAGACCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 12 0.48
8 13 0.52
ACGTcount: A:0.24, C:0.06, G:0.29, T:0.41
Consensus pattern (8 bp):
TGTGACTA
Found at i:97779716 original size:43 final size:43
Alignment explanation
Indices: 97779651--97779809 Score: 198
Period size: 43 Copynumber: 3.7 Consensus size: 43
97779641 AGCTTGTACA
97779651 ATGCCAACGTCCCAGACGAGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGAGGTCTTACATGTAATCAAATATCG
* * *
97779694 ATGCC-ACTGTCCCAGACAAGGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGACGAGGTCTTACATGTAATCAAATATCG
* * *
97779736 ATGCCAACGTCCCAGACGTGGTCTTACATATAAATCATAA-GTCG
1 ATGCCAACGTCCCAGACGAGGTCTTACATGT-AATCA-AATATCG
* *
97779780 ATGCCAACGTCCCAAACGTGGTCTTACATG
1 ATGCCAACGTCCCAGACGAGGTCTTACATG
97779810 ATAACACATA
Statistics
Matches: 100, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
42 26 0.26
43 43 0.43
44 31 0.31
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGAGGTCTTACATGTAATCAAATATCG
Found at i:97789443 original size:21 final size:22
Alignment explanation
Indices: 97789418--97789473 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
97789408 GACCATTGAG
* *
97789418 TTTATTTATTTTCTTTTTA-GT
1 TTTATTTATTTTATGTTTATGT
*
97789439 TTTATTTTTTTTATGTTTATGT
1 TTTATTTATTTTATGTTTATGT
*
97789461 TTATTTTTATTTT
1 TT-TATTTATTTT
97789474 TAGTTCTTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
21 16 0.57
22 4 0.14
23 8 0.29
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (22 bp):
TTTATTTATTTTATGTTTATGT
Found at i:97794253 original size:27 final size:27
Alignment explanation
Indices: 97794217--97794389 Score: 220
Period size: 27 Copynumber: 6.4 Consensus size: 27
97794207 GAATACTTTA
*
97794217 GTTTACAAAATTACCAAAATACCCCTG
1 GTTTATAAAATTACCAAAATACCCCTG
* * * *
97794244 GTTTGTAAAATCACTAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTG
*
97794271 GTTTATAAAATCACCAAAATACCCCTG
1 GTTTATAAAATTACCAAAATACCCCTG
* * *
97794298 ATTTGTAAAATTACCAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTG
*
97794325 GTTTACAAAATTACCAAAATACCCCTG
1 GTTTATAAAATTACCAAAATACCCCTG
* * * *
97794352 GTTTGTAAAATTACTAAAATACCCTTT
1 GTTTATAAAATTACCAAAATACCCCTG
97794379 GTTTATAAAAT
1 GTTTATAAAAT
97794390 ACCCCTGTAG
Statistics
Matches: 124, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 124 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
GTTTATAAAATTACCAAAATACCCCTG
Found at i:97794289 original size:54 final size:54
Alignment explanation
Indices: 97794217--97794389 Score: 283
Period size: 54 Copynumber: 3.2 Consensus size: 54
97794207 GAATACTTTA
*
97794217 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATCACTAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
* * * *
97794271 GTTTATAAAATCACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
*
97794325 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTT
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
*
97794379 GTTTATAAAAT
1 GTTTACAAAAT
97794390 ACCCCTGTAG
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 108 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (54 bp):
GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
Found at i:97794432 original size:27 final size:27
Alignment explanation
Indices: 97794386--97794778 Score: 432
Period size: 27 Copynumber: 15.0 Consensus size: 27
97794376 TTTGTTTATA
*
97794386 AAATACCCCTGTAGGATAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
97794413 AAATACCTCTATAAGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
97794440 AAATACACCTATAGGGTAGAA-T----
1 AAATACCCCTGTAGGGTAGAATTACCG
97794462 ---TACCCCTGTAGGGTAGAATTACC-
1 AAATACCCCTGTAGGGTAGAATTACCG
97794485 AGAATA-CCCTGTAGGGTAGAATTACCG
1 A-AATACCCCTGTAGGGTAGAATTACCG
**
97794512 AAATACCCC-GTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
97794538 CAGTACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
97794565 AAATACCCCTGTAGGGTAGAATTAACG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
97794592 AAATACCCCTGTAGGGTAAAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
97794619 AAATACCCCTGTAAGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
97794646 AAATACCCTTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
97794673 AAATACCCCTGTAGGGTGGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
97794700 AAATACCCCTGTAGGGTTGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
97794727 AAATACCCCTGTAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
97794754 AGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
97794779 ATTTTGCCCC
Statistics
Matches: 316, Mismatches: 39, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
19 16 0.05
20 1 0.00
26 63 0.20
27 236 0.75
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:97796953 original size:40 final size:40
Alignment explanation
Indices: 97796894--97797096 Score: 219
Period size: 40 Copynumber: 5.1 Consensus size: 40
97796884 CATTGGAATG
* * *
97796894 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
97796934 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
97796974 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
97797014 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
97797054 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
97797094 ATA
1 ATA
97797097 ATCGGTTAAA
Statistics
Matches: 137, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 132 0.96
41 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:97798691 original size:27 final size:27
Alignment explanation
Indices: 97798661--97798762 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
97798651 ATTCTGTTAA
* *
97798661 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
97798688 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
97798715 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
97798742 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
97798763 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:97798952 original size:6 final size:6
Alignment explanation
Indices: 97798899--97799005 Score: 58
Period size: 6 Copynumber: 17.3 Consensus size: 6
97798889 TTACATTCAT
* * * * *
97798899 ATTCTG ATTTTTG ATTCTG TTTTTG ATTCTG -TTACCTG ATACTG ATTCTA
1 ATTCTG A-TTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
97798949 ATTCTG ATTCTG ATTCT- CTCACCTA ATTCTG ATTCTA ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
97798997 AGTTCTG AT
1 A-TTCTG AT
97799006 AATGTTTCTT
Statistics
Matches: 75, Mismatches: 17, Indels: 18
0.68 0.15 0.16
Matches are distributed among these distances:
5 4 0.05
6 58 0.77
7 11 0.15
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:97798954 original size:37 final size:37
Alignment explanation
Indices: 97798912--97798996 Score: 116
Period size: 37 Copynumber: 2.3 Consensus size: 37
97798902 CTGATTTTTG
* * * * *
97798912 ATTCTGTTTTTGATTCTGTTACCTGATACTGATTCTA
1 ATTCTGATTCTGATTCTCTCACCTAATACTGATTCTA
*
97798949 ATTCTGATTCTGATTCTCTCACCTAATTCTGATTCTA
1 ATTCTGATTCTGATTCTCTCACCTAATACTGATTCTA
97798986 ATTCTGATTCT
1 ATTCTGATTCT
97798997 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTCTCACCTAATACTGATTCTA
Found at i:97798957 original size:12 final size:12
Alignment explanation
Indices: 97798940--97799005 Score: 71
Period size: 12 Copynumber: 5.4 Consensus size: 12
97798930 TTACCTGATA
97798940 CTGATTCTAATT
1 CTGATTCTAATT
*
97798952 CTGATTCTGATT
1 CTGATTCTAATT
* *
97798964 CT-CTCACCTAATT
1 CTGAT--TCTAATT
97798977 CTGATTCTAATT
1 CTGATTCTAATT
*
97798989 CTGATTCTAGTT
1 CTGATTCTAATT
97799001 CTGAT
1 CTGAT
97799006 AATGTTTCTT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
11 1 0.02
12 35 0.80
13 7 0.16
14 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.47
Consensus pattern (12 bp):
CTGATTCTAATT
Found at i:97800984 original size:27 final size:27
Alignment explanation
Indices: 97800948--97801120 Score: 202
Period size: 27 Copynumber: 6.4 Consensus size: 27
97800938 GAATACTTTA
*
97800948 GTTTACAAAATTACCAAAATACCCCTG
1 GTTTATAAAATTACCAAAATACCCCTG
* * * *
97800975 GTTTGTAAAATCACTAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTG
*
97801002 GTTTATAAAATCACCAAAATACCCCTG
1 GTTTATAAAATTACCAAAATACCCCTG
* * * **
97801029 ATTTGTAAAATTACCAAAGTACCTTTG
1 GTTTATAAAATTACCAAAATACCCCTG
*
97801056 GTTTACAAAATTACCAAAATACCCCTG
1 GTTTATAAAATTACCAAAATACCCCTG
* * * *
97801083 GTTTGTAAAATTACTAAAATACCCTTT
1 GTTTATAAAATTACCAAAATACCCCTG
97801110 GTTTATAAAAT
1 GTTTATAAAAT
97801121 ACCCCTGTAG
Statistics
Matches: 120, Mismatches: 26, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
GTTTATAAAATTACCAAAATACCCCTG
Found at i:97801020 original size:54 final size:54
Alignment explanation
Indices: 97800948--97801120 Score: 265
Period size: 54 Copynumber: 3.2 Consensus size: 54
97800938 GAATACTTTA
*
97800948 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATCACTAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
* * * * * *
97801002 GTTTATAAAATCACCAAAATACCCCTGATTTGTAAAATTACCAAAGTACCTTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
*
97801056 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTT
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
*
97801110 GTTTATAAAAT
1 GTTTACAAAAT
97801121 ACCCCTGTAG
Statistics
Matches: 104, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 104 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
Found at i:97801149 original size:27 final size:27
Alignment explanation
Indices: 97801117--97801348 Score: 284
Period size: 27 Copynumber: 8.9 Consensus size: 27
97801107 TTTGTTTATA
*
97801117 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * * *
97801144 GAATACCTCTATAAGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
97801171 AAATACCCCTATAGGGTAGAA-T----
1 AAATACCCCTGTAGGGTAGAATTACCG
97801193 ---TACCCCTGTAGGGTAGAATTACC-
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
97801216 AGAATACTCCTGTAGGGTAGAATTATCG
1 A-AATACCCCTGTAGGGTAGAATTACCG
* *
97801244 CAATACCCCTGTAGGGTATAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
97801271 AAATACCCCTGTAGGGTAGAATTAACG
1 AAATACCCCTGTAGGGTAGAATTACCG
97801298 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
97801325 AAATACCCCTGTAGGGTAGAATTA
1 AAATACCCCTGTAGGGTAGAATTA
97801349 ATACACCTAT
Statistics
Matches: 176, Mismatches: 20, Indels: 18
0.82 0.09 0.08
Matches are distributed among these distances:
19 17 0.10
20 1 0.01
26 1 0.01
27 157 0.89
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:97801198 original size:19 final size:19
Alignment explanation
Indices: 97801174--97801215 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
97801164 ATTACTGAAA
97801174 TACCCCTATAGGGTAGAAT
1 TACCCCTATAGGGTAGAAT
*
97801193 TACCCCTGTAGGGTAGAAT
1 TACCCCTATAGGGTAGAAT
97801212 TACC
1 TACC
97801216 AGAATACTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (19 bp):
TACCCCTATAGGGTAGAAT
Found at i:97802077 original size:27 final size:27
Alignment explanation
Indices: 97802047--97802147 Score: 123
Period size: 27 Copynumber: 3.7 Consensus size: 27
97802037 ATTCTGTAAA
* *
97802047 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
97802074 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
97802101 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
97802128 GTGACTCTGTCACAATATCT
1 GTGGCTATGCCACAATATCT
97802148 AATAACTGAG
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:97802309 original size:12 final size:12
Alignment explanation
Indices: 97802285--97802317 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
97802275 TTACATTCAT
97802285 ATTCTGATTTTTG
1 ATTCTG-TTTTTG
97802298 ATTCTGTTTTTG
1 ATTCTGTTTTTG
97802310 ATTCTGTT
1 ATTCTGTT
97802318 ACCTGATACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.12, C:0.09, G:0.15, T:0.64
Consensus pattern (12 bp):
ATTCTGTTTTTG
Found at i:97802349 original size:12 final size:12
Alignment explanation
Indices: 97802285--97802351 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
97802275 TTACATTCAT
*
97802285 ATTCTGATTTTTG
1 ATTCTGA-TTCTG
* *
97802298 ATTCTGTTTTTG
1 ATTCTGATTCTG
97802310 ATTCTG-TTACCTG
1 ATTCTGATT--CTG
* *
97802323 ATACTGATTGTG
1 ATTCTGATTCTG
97802335 ATTCTGATTCTG
1 ATTCTGATTCTG
97802347 ATTCT
1 ATTCT
97802352 CTCACCTAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
11 2 0.04
12 28 0.62
13 13 0.29
14 2 0.04
ACGTcount: A:0.16, C:0.13, G:0.16, T:0.54
Consensus pattern (12 bp):
ATTCTGATTCTG
Found at i:97802374 original size:12 final size:12
Alignment explanation
Indices: 97802357--97802391 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
97802347 ATTCTCTCAC
*
97802357 CTAATTCTTATT
1 CTAATTCTGATT
97802369 CTAATTCTGATT
1 CTAATTCTGATT
*
97802381 CTAGTTCTGAT
1 CTAATTCTGAT
97802392 AATGTTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.23, C:0.17, G:0.09, T:0.51
Consensus pattern (12 bp):
CTAATTCTGATT
Found at i:97805828 original size:40 final size:40
Alignment explanation
Indices: 97805724--97805901 Score: 204
Period size: 40 Copynumber: 4.5 Consensus size: 40
97805714 TGGATGATAA
* *
97805724 CCGGGCTAAGTCCCGAAGGCATTT-TGCACTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTG--CGAGTTACTA-TAT
97805765 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
97805805 CCGGGCTAAGTCCCAAAGACATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
97805845 CTGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
97805884 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
97805902 TACTTGGCTT
Statistics
Matches: 121, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
38 15 0.12
39 16 0.13
40 64 0.53
41 24 0.20
42 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:97809216 original size:47 final size:47
Alignment explanation
Indices: 97809147--97810157 Score: 1637
Period size: 47 Copynumber: 21.3 Consensus size: 47
97809137 CCCTTCGGGA
* * * * *
97809147 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97809194 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
* *
97809241 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97809288 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
97809335 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97809382 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97809429 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97809476 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97809523 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
97809570 CTTGTCACTTATAGACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97809617 CTTATCACATATATACACTTTCACATTCATCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTT--CA--CAT----T-CATCACATCGGCCATTAGGC
*
97809673 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97809720 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97809767 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97809814 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** *
97809861 CTTGTCATTTATATACACTTTCACTTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97809908 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97809955 CTTTTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
97810002 CTTGTCACTTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97810049 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
97810096 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97810143 CTTATCACATATATA
1 CTTATCACATATATA
97810158 TATCTCATAC
Statistics
Matches: 908, Mismatches: 45, Indels: 22
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 855 0.94
48 1 0.00
49 2 0.00
51 3 0.00
52 3 0.00
54 2 0.00
55 1 0.00
56 40 0.04
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:97809225 original size:25 final size:25
Alignment explanation
Indices: 97809197--97809275 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
97809187 ACTCGGCCTT
*
97809197 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * *
97809222 ATCACAT-T-GGC-CATTCAGCCTT-
1 ATCACATATATGCACTTTCA-CATTC
97809244 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
97809269 ATCACAT
1 ATCACAT
97809276 GGGCCATTAG
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
22 12 0.29
23 5 0.12
24 6 0.14
25 19 0.45
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:97813448 original size:12 final size:12
Alignment explanation
Indices: 97813427--97813457 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
97813417 TAGTTTAGAA
*
97813427 GAGATCTATAAG
1 GAGATTTATAAG
97813439 GAGATTTATAAG
1 GAGATTTATAAG
97813451 GAGATTT
1 GAGATTT
97813458 GGCTATACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.39, C:0.03, G:0.26, T:0.32
Consensus pattern (12 bp):
GAGATTTATAAG
Found at i:97815443 original size:28 final size:29
Alignment explanation
Indices: 97815412--97815542 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
97815402 GTGACGAGAT
97815412 TGGCACTAAGTGTGCGTGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
97815440 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ****
97815469 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
97815498 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
97815527 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
97815543 AAATCGAGTA
Statistics
Matches: 87, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 26 0.30
29 61 0.70
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:97815479 original size:29 final size:28
Alignment explanation
Indices: 97815412--97815483 Score: 126
Period size: 28 Copynumber: 2.5 Consensus size: 28
97815402 GTGACGAGAT
*
97815412 TGGCACTAAGTGTGCGTGCTGGAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAATA
97815440 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAA-ATA
97815469 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
97815484 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (28 bp):
TGGCACTAAGTGTGCATGCTGGAAAATA
Found at i:97817848 original size:39 final size:40
Alignment explanation
Indices: 97817801--97817944 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
97817791 AATGTTCGAG
97817801 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* * *
97817840 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* ** *
97817879 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
97817919 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAGTCCCGAAGGC
97817945 GTTTGAACAG
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 51 0.57
40 38 0.43
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:97822453 original size:29 final size:29
Alignment explanation
Indices: 97822420--97822493 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
97822410 GTGACGAGAT
97822420 TGGCACTAAGTGTGCGTGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
97822449 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
97822478 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
97822494 AGCTCGAAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:97822509 original size:29 final size:29
Alignment explanation
Indices: 97822477--97822552 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
97822467 CTGGAAATAT
* *
97822477 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
97822506 ATGGCACTATGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
97822535 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
97822553 AATCGAGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:97822510 original size:58 final size:58
Alignment explanation
Indices: 97822420--97822552 Score: 142
Period size: 58 Copynumber: 2.3 Consensus size: 58
97822410 GTGACGAGAT
* * * * *
97822420 TGGCACTAAGTGTGCGTGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCT-GAAATCACA
*** * * * *
97822478 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTATGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCTGAAATCACA
97822536 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
97822553 AATCGAGTAT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
57 4 0.06
58 58 0.94
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.24
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:97832069 original size:2 final size:2
Alignment explanation
Indices: 97832062--97832098 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
97832052 TCGATCGGAG
* *
97832062 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AG AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97832099 GAGTACGCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (2 bp):
AT
Found at i:97832223 original size:29 final size:29
Alignment explanation
Indices: 97832191--97832263 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
97832181 CTTCGAGCTC
*
97832191 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
97832220 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
97832249 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
97832264 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:97839693 original size:93 final size:93
Alignment explanation
Indices: 97839581--97839752 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
97839571 CGCCCATAAG
* *
97839581 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97839646 ACGAGTTCGGATGCCTGGTTACATCTCA
66 ACGAGTTCGGATGCCTGGTTACATCTCA
* *
97839674 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97839739 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
97839753 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTGGTTACATCTCA
Found at i:97839749 original size:46 final size:46
Alignment explanation
Indices: 97839574--97839749 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
97839564 TGTAACCCGC
* * * *
97839574 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
97839620 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTGGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA--CAT--TTGCAT
*
97839670 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
97839713 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
97839750 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 4 0.04
46 63 0.57
47 29 0.26
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:97840827 original size:40 final size:40
Alignment explanation
Indices: 97840720--97841004 Score: 409
Period size: 40 Copynumber: 7.2 Consensus size: 40
97840710 TGAATGATAC
* * *
97840720 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
97840760 TCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
97840799 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
97840839 CCGGGCTAAGACCCGAAGGCATTTGT--GAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
97840877 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
97840917 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
97840957 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
97840997 CC-GGCTAA
1 CCGGGCTAA
97841005 ATTCCGAAGA
Statistics
Matches: 222, Mismatches: 19, Indels: 9
0.89 0.08 0.04
Matches are distributed among these distances:
38 38 0.17
39 37 0.17
40 147 0.66
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:97840895 original size:78 final size:79
Alignment explanation
Indices: 97840720--97841004 Score: 398
Period size: 78 Copynumber: 3.6 Consensus size: 79
97840710 TGAATGATAC
* * * *
97840720 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATTCGGGCTAAGA-CCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
97840783 GTGCGAGTTGTTATAT
65 GT-CGAGTTGTTATAT
* *
97840799 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
97840864 T-GAGTTGTTATAT
66 TCGAGTTGTTATAT
97840877 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
* *
97840942 TGCGAGTTGCTATAC
66 T-CGAGTTGTTATAT
* * ** *
97840957 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAA
97841005 ATTCCGAAGA
Statistics
Matches: 187, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
78 76 0.41
79 48 0.26
80 63 0.34
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
TCGAGTTGTTATAT
Found at i:97840929 original size:118 final size:118
Alignment explanation
Indices: 97840716--97841004 Score: 422
Period size: 118 Copynumber: 2.4 Consensus size: 118
97840706 CATTTGAATG
* * *
97840716 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATTCGGGCTAAGACCGAAGGCAT
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGC-AGTGATTATATCCGGGCTAAGACCGAAGGCAT
* *
97840781 TTGTGCGAGTTGTTATATCTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
65 TTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
*
97840835 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-AGTTG-TTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCAG-TGATTATATCCGGGCTAAGA-CCGAAGGCA
*
97840898 TTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
64 TTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
* * * *
97840953 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGC-AGTGATTATATCCGGGCTAA
97841005 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
117 18 0.12
118 91 0.59
119 36 0.23
120 9 0.06
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (118 bp):
ATACCCGGGCTAAGACCCGAAGGCATTTGTGCAGTGATTATATCCGGGCTAAGACCGAAGGCATT
TGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
Found at i:97849047 original size:40 final size:40
Alignment explanation
Indices: 97848992--97849239 Score: 374
Period size: 40 Copynumber: 6.2 Consensus size: 40
97848982 TGAATGATAC
* * *
97848992 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
97849032 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
97849072 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
97849112 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
97849152 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
97849192 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
97849232 CC-GGCTAA
1 CCGGGCTAA
97849240 ATTCCGAAGA
Statistics
Matches: 192, Mismatches: 15, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
39 5 0.03
40 185 0.96
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:97853638 original size:9 final size:8
Alignment explanation
Indices: 97853611--97853636 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
97853601 CCGTACCTAG
97853611 AAGAAAAA
1 AAGAAAAA
97853619 AAGAAAAA
1 AAGAAAAA
97853627 AAGAAAAA
1 AAGAAAAA
97853635 AA
1 AA
97853637 AGGCTTCATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAGAAAAA
Found at i:97854852 original size:40 final size:40
Alignment explanation
Indices: 97854797--97854980 Score: 291
Period size: 40 Copynumber: 4.6 Consensus size: 40
97854787 GGATGATAAT
*
97854797 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGT-CTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-TACTATA-TC
*
97854837 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
97854877 CGGGCTAAGTCCCGAAGGCATTTGTTCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
97854917 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
97854957 CGGGCTAAGTCCCAAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
97854981 AGCAAGTAGT
Statistics
Matches: 136, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
39 1 0.01
40 134 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:97854995 original size:80 final size:80
Alignment explanation
Indices: 97854792--97855012 Score: 288
Period size: 80 Copynumber: 2.8 Consensus size: 80
97854782 TATTCGGATG
* *
97854792 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GTCTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGT-TATA-TCCGGGCTAAGTCCCGAAGG
97854855 CATTTGTGCAAGTTACT
64 CATTTGTGCAAGTTACT
* * * *
97854872 ATATCCGGGCTAAGTCCCGAAGGCATTTGTTCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGTTATATCCGGGCTAAGTCCCGAAGGC
*
97854936 ATTTGTGCGAGTTACT
65 ATTTGTGCAAGTTACT
* * * *
97854952 ATAACCGGGCTAAGTCCCAAAGGCATTTGAGCAAGTAGTTATATTC-GGCTAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGTCCCGAAG
97855013 ATGCTTGGGT
Statistics
Matches: 123, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
79 16 0.13
80 105 0.85
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCAAGTTACT
Found at i:97859279 original size:16 final size:17
Alignment explanation
Indices: 97859240--97859295 Score: 51
Period size: 16 Copynumber: 3.2 Consensus size: 17
97859230 AGCCTAATAT
97859240 TATTATATTATTAATAAA
1 TATT-TATTATTAATAAA
* *
97859258 TTTTTATTTTTAA-AAA
1 TATTTATTATTAATAAA
**
97859274 TATTTAAAATTAATAAAA
1 TATTTATTATTAAT-AAA
97859292 TATT
1 TATT
97859296 ATAATTTTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
16 12 0.40
17 8 0.27
18 10 0.33
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTTATTATTAATAAA
Found at i:97867615 original size:37 final size:36
Alignment explanation
Indices: 97867565--97867651 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
97867555 TGCGAAGTCT
97867565 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
97867601 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
97867638 TCACCCGGAACATA
1 T-ACCCGG-ACATA
97867652 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:97867781 original size:49 final size:49
Alignment explanation
Indices: 97867720--97867924 Score: 374
Period size: 49 Copynumber: 4.2 Consensus size: 49
97867710 TTTGCCACAT
*
97867720 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
97867769 ATATATACACACTTTCACATTCATCACGTCGACCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
97867818 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
97867867 ACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
97867916 ATATATACA
1 ATATATACA
97867925 TCTCATACAT
Statistics
Matches: 150, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 150 1.00
ACGTcount: A:0.31, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:97870441 original size:40 final size:40
Alignment explanation
Indices: 97870392--97870661 Score: 459
Period size: 40 Copynumber: 6.8 Consensus size: 40
97870382 CCAGCGCGAT
* * * *
97870392 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
97870432 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
97870472 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
97870512 TGCTCCTCGGAACTTAGTCCGGATAAATCACTAGCACGAA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
97870552 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
97870592 TGCTCCTCGAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
97870632 TGCTCTTCGGAACTTAGCCCGGATACATCA
1 TGCTCCTCGGAACTTAGTCCGGATACATCA
97870662 TTATACATGT
Statistics
Matches: 220, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 220 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (40 bp):
TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:97872592 original size:37 final size:36
Alignment explanation
Indices: 97872542--97872628 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
97872532 TGCGAAGTCT
97872542 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
97872578 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
97872615 TCACCCGGAACATA
1 T-ACCCGG-ACATA
97872629 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:97872760 original size:49 final size:49
Alignment explanation
Indices: 97872697--97872950 Score: 454
Period size: 49 Copynumber: 5.2 Consensus size: 49
97872687 TTTGCCACAT
* *
97872697 ATATATATATACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
97872746 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
97872795 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
97872844 ACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
97872893 ACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
97872942 ATATATACA
1 ATATATACA
97872951 TCTCATACAT
Statistics
Matches: 200, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 200 1.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
ATATATACACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:97878650 original size:17 final size:17
Alignment explanation
Indices: 97878625--97878661 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
97878615 TAACTACATG
97878625 ATATATAAAAATTTAAA
1 ATATATAAAAATTTAAA
* *
97878642 ATATGTAAAACTTTAAA
1 ATATATAAAAATTTAAA
97878659 ATA
1 ATA
97878662 CATGGTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (17 bp):
ATATATAAAAATTTAAA
Found at i:97885166 original size:22 final size:22
Alignment explanation
Indices: 97885136--97885196 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 22
97885126 ATTGAACATG
97885136 TGCA-TGTGCGAACCTCTTCCA
1 TGCATTGTGCGAACCTCTTCCA
* * *
97885157 TGCATTGTGCAAACCTCATCTA
1 TGCATTGTGCGAACCTCTTCCA
*
97885179 TGCATTGTGTGAA-CTCTT
1 TGCATTGTGCGAACCTCTT
97885197 AGCTTGAATC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 8 0.24
22 25 0.76
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (22 bp):
TGCATTGTGCGAACCTCTTCCA
Found at i:97890191 original size:24 final size:24
Alignment explanation
Indices: 97890164--97890209 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
97890154 GAATTTAACA
97890164 TTCAAAT-CAGCACACATAGTGCCT
1 TTCAAATAC-GCACACATAGTGCCT
* *
97890188 TTCAACTACGCACACGTAGTGC
1 TTCAAATACGCACACATAGTGC
97890210 TAGTATCGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (24 bp):
TTCAAATACGCACACATAGTGCCT
Found at i:97893095 original size:26 final size:25
Alignment explanation
Indices: 97893054--97893122 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
97893044 GGAGGAAGTG
*
97893054 CAAAAAGGGCTATGCCCCAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTTAC
*
97893079 CAAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAAGGGC-TTTGCCCCAGTTTAC
97893105 C-AAAAGGGCTTTGCCCCA
1 CAAAAAGGGCTTTGCCCCA
97893123 ATTATTAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
24 9 0.22
25 18 0.44
26 14 0.34
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:97893138 original size:24 final size:24
Alignment explanation
Indices: 97893056--97893138 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 24
97893046 AGGAAGTGCA
* * *
97893056 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGATTATC
*
97893080 AAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TTTGCCCCAGATTATC
*
97893106 AAAAGGGCTTTGCCCCA-ATTATT
1 AAAAGGGCTTTGCCCCAGATTATC
97893129 AAAAGAGGCT
1 AAAAG-GGCT
97893139 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 9 0.17
24 13 0.25
25 16 0.31
26 14 0.27
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGATTATC
Found at i:97893384 original size:31 final size:31
Alignment explanation
Indices: 97893348--97893437 Score: 101
Period size: 38 Copynumber: 2.7 Consensus size: 31
97893338 GTTTACAGTG
*
97893348 AAGGCTTCGGCCTAGTAATATGAAATATGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
97893379 AAGGCTTCGGCCCAGTGTTATGAGATATGAAATATGAA
1 AAGGCTTCGGCCCA--G---T-A-ATATGAAATATGAA
97893417 AAGGCTTCGGCCCAGT-ATATG
1 AAGGCTTCGGCCCAGTAATATG
97893438 CTGAGATGGA
Statistics
Matches: 51, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
30 5 0.10
31 13 0.25
33 2 0.04
36 2 0.04
37 1 0.02
38 28 0.55
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:97894891 original size:23 final size:22
Alignment explanation
Indices: 97894857--97894936 Score: 69
Period size: 23 Copynumber: 3.5 Consensus size: 22
97894847 AAAGAAGTTT
97894857 AATAACAATAAAAAAAAGATAGA
1 AATAA-AATAAAAAAAAGATAGA
97894880 AATAAAACTAAAAAGAAAG-TA-A
1 AATAAAA-TAAAAA-AAAGATAGA
*
97894902 GAATAAAAATAAAATAAA-AT-GA
1 -AAT-AAAATAAAAAAAAGATAGA
97894924 AATGAAAATAAAA
1 AAT-AAAATAAAA
97894937 GAGATGGACT
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
21 12 0.24
22 8 0.16
23 21 0.43
24 8 0.16
ACGTcount: A:0.74, C:0.03, G:0.09, T:0.15
Consensus pattern (22 bp):
AATAAAATAAAAAAAAGATAGA
Found at i:97894919 original size:11 final size:11
Alignment explanation
Indices: 97894857--97894936 Score: 58
Period size: 11 Copynumber: 7.2 Consensus size: 11
97894847 AAAGAAGTTT
*
97894857 AATAACAATAA
1 AATAAAAATAA
97894868 AA-AAAAGATAGA
1 AATAAAA-ATA-A
*
97894880 AATAAAACTAA
1 AATAAAAATAA
*
97894891 AA-AGAAAGTAA
1 AATA-AAAATAA
97894902 GAATAAAAATAA
1 -AATAAAAATAA
*
97894914 AAT-AAAATGA
1 AATAAAAATAA
*
97894924 AATGAAAATAA
1 AATAAAAATAA
97894935 AA
1 AA
97894937 GAGATGGACT
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
10 13 0.23
11 25 0.45
12 13 0.23
13 5 0.09
ACGTcount: A:0.74, C:0.03, G:0.09, T:0.15
Consensus pattern (11 bp):
AATAAAAATAA
Found at i:97897721 original size:28 final size:29
Alignment explanation
Indices: 97897681--97897761 Score: 110
Period size: 29 Copynumber: 2.8 Consensus size: 29
97897671 GTAAATGTGT
* *
97897681 TTTGGGCCTAAT-GGCCATATGAATTTTA
1 TTTGGGCCTAATGGGCCATATGAATGTAA
*
97897709 TTTGGGCCTAATGGGCCATATAAATGTAA
1 TTTGGGCCTAATGGGCCATATGAATGTAA
* *
97897738 TTTAGGCCTCATGGGCCATATGAA
1 TTTGGGCCTAATGGGCCATATGAA
97897762 AGAGATTGGG
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 12 0.26
29 34 0.74
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33
Consensus pattern (29 bp):
TTTGGGCCTAATGGGCCATATGAATGTAA
Found at i:97897740 original size:29 final size:29
Alignment explanation
Indices: 97897672--97897758 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
97897662 AGTATGTCTG
**
97897672 TAAATGTGTTTTGGGCCTAAT-GGCCATA
1 TAAATGTAATTTGGGCCTAATGGGCCATA
* * *
97897700 TGAATTTTATTTGGGCCTAATGGGCCATA
1 TAAATGTAATTTGGGCCTAATGGGCCATA
* *
97897729 TAAATGTAATTTAGGCCTCATGGGCCATA
1 TAAATGTAATTTGGGCCTAATGGGCCATA
97897758 T
1 T
97897759 GAAAGAGATT
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 17 0.35
29 32 0.65
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (29 bp):
TAAATGTAATTTGGGCCTAATGGGCCATA
Found at i:97900141 original size:3 final size:3
Alignment explanation
Indices: 97900128--97900192 Score: 51
Period size: 3 Copynumber: 20.7 Consensus size: 3
97900118 TAGAATATAG
* * *
97900128 AAT AAT AAAT AAT AAAC AAT GAA- AAT AAC AAAT AAT AAT AAT ACT AAT
1 AAT AAT -AAT AAT -AAT AAT -AAT AAT AAT A-AT AAT AAT AAT AAT AAT
*
97900176 AAT AAT AAA AAT AAT AA
1 AAT AAT AAT AAT AAT AA
97900193 ATGTGAAAGT
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
2 2 0.04
3 38 0.78
4 9 0.18
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:97902944 original size:27 final size:28
Alignment explanation
Indices: 97902910--97902978 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
97902900 TACTCGATCA
* *
97902910 CGCACACTTAGTGCCATATATTC-AGCT
1 CGCACACTTAGTGCCATATAATCAAACT
*
97902937 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCCATATAATCAAACT
97902965 CGCACACTTAGTGC
1 CGCACACTTAGTGC
97902979 TGTACAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATAATCAAACT
Found at i:97904347 original size:18 final size:18
Alignment explanation
Indices: 97904314--97904352 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
97904304 TCCACACCCA
97904314 TTTTTTTTTCATCATTATCT
1 TTTTTTTTTCA-CATT-TCT
97904334 TTTTTTTTTC-CATTTCT
1 TTTTTTTTTCACATTTCT
97904351 TT
1 TT
97904353 ATTCTCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 4 0.21
20 10 0.53
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTTTTCACATTTCT
Found at i:97910835 original size:28 final size:27
Alignment explanation
Indices: 97910768--97910837 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
97910758 TACTCGATCA
* * *
97910768 CGCACACTTAGTGCCATATATTCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
*
97910795 CACACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
97910823 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97910838 GTACAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 20 0.54
28 17 0.46
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:97912205 original size:17 final size:17
Alignment explanation
Indices: 97912173--97912210 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
97912163 TCCACACCCA
97912173 TTTTTTTTTCATCATTATC
1 TTTTTTTTTCA-CATT-TC
97912192 TTTTTTTTTC-CATTTC
1 TTTTTTTTTCACATTTC
97912208 TTT
1 TTT
97912211 ATTCTCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.26
17 4 0.21
19 10 0.53
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTTTTTCACATTTC
Found at i:97918874 original size:20 final size:20
Alignment explanation
Indices: 97918849--97918889 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
97918839 GATAAATAAG
97918849 TCAAAATTGGTGCCCATCTT
1 TCAAAATTGGTGCCCATCTT
*
97918869 TCAAAATTGGTGTCCATCTT
1 TCAAAATTGGTGCCCATCTT
97918889 T
1 T
97918890 TTCTTTCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (20 bp):
TCAAAATTGGTGCCCATCTT
Found at i:97919232 original size:11 final size:11
Alignment explanation
Indices: 97919216--97919247 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
97919206 TACGAAAACT
97919216 TAAGAAAATTC
1 TAAGAAAATTC
97919227 TAAGAAAATTC
1 TAAGAAAATTC
97919238 TAAGAAAATT
1 TAAGAAAATT
97919248 TCTAGGATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.56, C:0.06, G:0.09, T:0.28
Consensus pattern (11 bp):
TAAGAAAATTC
Found at i:97928414 original size:29 final size:29
Alignment explanation
Indices: 97928381--97928463 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
97928371 GTGACGAGAT
97928381 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
97928410 TGGCACTAAGTGTGTATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
97928439 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
97928464 AAAAAAATAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:97940052 original size:29 final size:29
Alignment explanation
Indices: 97939984--97940084 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
97939974 GTGACGAGAT
97939984 TGGCACTAAGTGTGCATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
97940012 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
97940041 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
97940070 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
97940085 GAGCTCGAAG
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
28 24 0.34
29 46 0.66
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:97940100 original size:29 final size:29
Alignment explanation
Indices: 97939984--97940144 Score: 107
Period size: 29 Copynumber: 5.6 Consensus size: 29
97939974 GTGACGAGAT
* *
97939984 TGGCACTAAGTGTGC-ATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* * **
97940012 TGGCACTGAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* **
97940041 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
97940070 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
** * * *
97940099 TGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
97940128 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
97940145 AATCGAGTAT
Statistics
Matches: 114, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
28 26 0.23
29 87 0.76
30 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:97940113 original size:58 final size:59
Alignment explanation
Indices: 97939980--97940105 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 59
97939970 TACGGTGACG
* *
97939980 AGAT-TGGCACTAAGTGTGCATGCTGGAAA-ATATGGCACTGAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
*
97940036 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
* *
97940094 GGGTATGGCACT
1 AGATATGGCACT
97940106 GTGTGTGCGG
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
56 3 0.05
57 25 0.41
58 32 0.52
59 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (59 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
Found at i:97947943 original size:29 final size:29
Alignment explanation
Indices: 97947910--97948011 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
97947900 GTGACGAGAT
*
97947910 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
97947939 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
97947968 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
97947997 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
97948012 GAGCTCGAAG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:97948027 original size:29 final size:29
Alignment explanation
Indices: 97947910--97948071 Score: 107
Period size: 29 Copynumber: 5.6 Consensus size: 29
97947900 GTGACGAGAT
* **
97947910 TGGCACTAAGTGTGC-ATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* * **
97947939 TGGCACTGAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* **
97947968 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
97947997 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
** * * *
97948026 TGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
97948055 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
97948072 AATCGAGTAT
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
28 2 0.02
29 111 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:97948040 original size:58 final size:59
Alignment explanation
Indices: 97947906--97948032 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 59
97947896 TACGGTGACG
* * *
97947906 AGAT-TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
*
97947963 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
* *
97948021 GGGTATGGCACT
1 AGATATGGCACT
97948033 GTGTGTGCGG
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 3 0.05
58 57 0.93
59 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (59 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
Found at i:97955537 original size:46 final size:46
Alignment explanation
Indices: 97955370--97955542 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 46
97955360 AACCCGCCCC
* *
97955370 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA
* * * * *
97955416 TAAGTGAACTCAGACTCAACTCAACTAGCTAGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
97955464 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
97955509 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97955543 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 57 0.56
47 25 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:97955544 original size:93 final size:93
Alignment explanation
Indices: 97955375--97955545 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
97955365 GCCCCTAAGT
* *
97955375 GAACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
97955440 CTAGCTAGGATGCCTAGTTACATCTCAC
66 CGAGCTAGGATGCCTAGTTACATCTCAC
*
97955468 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
* *
97955532 ACGAGTTCGGATGC
65 ACGAGCTAGGATGC
97955546 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTAGGATGCCTAGTTACATCTCAC
Done.