Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 320 of 770
Found at i:97957839 original size:40 final size:40
Alignment explanation
Indices: 97957775--97957963 Score: 208
Period size: 38 Copynumber: 4.8 Consensus size: 40
97957765 GCTACTCGTT
* * * ***
97957775 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
97957815 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
97957855 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
97957894 C-ATTGCCTTCGGG-CTTAGCCCGGATATCACAA-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
97957931 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
97957964 TTCGCACATT
Statistics
Matches: 134, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
37 6 0.04
38 60 0.45
39 23 0.17
40 45 0.34
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:97957908 original size:38 final size:38
Alignment explanation
Indices: 97957811--97957971 Score: 234
Period size: 38 Copynumber: 4.2 Consensus size: 38
97957801 TATGGTAACC
* *
97957811 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCAC-ACT
*
97957851 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACA-CT
*
97957890 CGCAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACACT
*
97957927 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC-ACT
97957966 CGCACA
1 CGCACA
97957972 TTCATACACA
Statistics
Matches: 112, Mismatches: 6, Indels: 7
0.90 0.05 0.06
Matches are distributed among these distances:
37 6 0.05
38 59 0.53
39 30 0.27
40 17 0.15
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (38 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACACT
Found at i:97957969 original size:76 final size:78
Alignment explanation
Indices: 97957819--97957973 Score: 260
Period size: 76 Copynumber: 2.0 Consensus size: 78
97957809 CCCGCACAAA
97957819 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
* *
97957884 ATAGCTCGCACAT
66 ACAACTCGCACAT
*
97957897 TGCCTTCGGG-CTTAGCCCGGATATCACAA-TCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
*
97957960 ACAATTCGCACAT
66 ACAACTCGCACAT
97957973 T
1 T
97957974 CATACACATC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
76 45 0.62
77 18 0.25
78 10 0.14
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.25
Consensus pattern (78 bp):
TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
ACAACTCGCACAT
Found at i:97964034 original size:39 final size:39
Alignment explanation
Indices: 97963953--97964115 Score: 272
Period size: 39 Copynumber: 4.2 Consensus size: 39
97963943 TATGGTAACC
* *
97963953 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
97963993 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
97964032 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
97964071 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
97964110 CGCACA
1 CGCACA
97964116 TTCATACACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:97971488 original size:20 final size:20
Alignment explanation
Indices: 97971460--97971502 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
97971450 GTAATATAAA
* *
97971460 AAAACTTATAATTATTTTTT
1 AAAACTTATAATGAATTTTT
* *
97971480 AAAATTTATTATGAATTTTT
1 AAAACTTATAATGAATTTTT
97971500 AAA
1 AAA
97971503 GTCAGAACAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
AAAACTTATAATGAATTTTT
Found at i:97972477 original size:90 final size:92
Alignment explanation
Indices: 97972369--97972537 Score: 279
Period size: 90 Copynumber: 1.9 Consensus size: 92
97972359 GCCCCTAAGT
***
97972369 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTC-GACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97972433 CGAG-TCGGATGCTAGTTACATCTCAC
66 CGAGTTCGGATGCTAGTTACATCTCAC
* *
97972459 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97972524 CGAGTTCGGATGCT
66 CGAGTTCGGATGCT
97972538 CAACCATCCT
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
90 47 0.65
91 16 0.22
92 9 0.12
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCTAGTTACATCTCAC
Found at i:97972521 original size:46 final size:46
Alignment explanation
Indices: 97972364--97972533 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
97972354 AACCAGCCCC
* ***
97972364 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
97972410 TAAGTGAACTC-GACTCAACTCAACGAG-TCGGATGCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--C-A-TTCGCATCCA
* * *
97972455 TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
97972500 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97972534 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 12 0.12
45 36 0.35
46 44 0.43
47 3 0.03
48 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:97973952 original size:14 final size:14
Alignment explanation
Indices: 97973933--97973960 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97973923 TTCTTGCACA
97973933 CTTTATCAACAAAC
1 CTTTATCAACAAAC
97973947 CTTTATCAACAAAC
1 CTTTATCAACAAAC
97973961 ACATTCTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (14 bp):
CTTTATCAACAAAC
Found at i:97976790 original size:2 final size:2
Alignment explanation
Indices: 97976783--97976807 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97976773 CTAATCCATG
97976783 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
97976808 AATTCATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97977908 original size:38 final size:35
Alignment explanation
Indices: 97977866--97977953 Score: 121
Period size: 31 Copynumber: 2.5 Consensus size: 35
97977856 AATAACAAGC
97977866 CCTTTTCATATTTCATATTTCATAATACTGGGCCGAAG
1 CCTTTTCATATTTCATATTT-AT--TACTGGGCCGAAG
97977904 CCTTTTCATATTTC--A--TATTACTGGGCCGAAG
1 CCTTTTCATATTTCATATTTATTACTGGGCCGAAG
97977935 CCTTTTCATATTTCATATT
1 CCTTTTCATATTTCATATT
97977954 ACTAGGCCGA
Statistics
Matches: 46, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
31 27 0.59
33 3 0.07
34 1 0.02
36 1 0.02
38 14 0.30
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43
Consensus pattern (35 bp):
CCTTTTCATATTTCATATTTATTACTGGGCCGAAG
Found at i:97977914 original size:31 final size:31
Alignment explanation
Indices: 97977876--97977970 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
97977866 CCTTTTCATA
*
97977876 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
97977907 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
*
97977938 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
97977969 TT
1 TT
97977971 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:97978213 original size:24 final size:24
Alignment explanation
Indices: 97978162--97978328 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
97978152 GCTTTATCAT
* *
97978162 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
97978187 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
97978211 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
97978234 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
97978258 ATAACTGGGGTATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
97978282 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
97978306 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97978329 TCACTTCCTC
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
23 23 0.17
24 98 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:97978262 original size:71 final size:71
Alignment explanation
Indices: 97978161--97978328 Score: 248
Period size: 71 Copynumber: 2.3 Consensus size: 71
97978151 TGCTTTATCA
*
97978161 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
97978225 AGCCCTTT
64 AGCCCTTT
* * * **
97978233 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGTATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
97978298 CCCTTT
66 CCCTTT
97978304 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
97978329 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
71 52 0.59
72 36 0.41
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:97978403 original size:20 final size:20
Alignment explanation
Indices: 97978378--97978438 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
97978368 TTATGATTAC
97978378 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
97978398 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
97978418 TTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
97978438 A
1 A
97978439 CCATATTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:97978409 original size:11 final size:11
Alignment explanation
Indices: 97978378--97978433 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
97978368 TTATGATTAC
97978378 ATCATGTGCAT
1 ATCATGTGCAT
*
97978389 ATCA--TACAT
1 ATCATGTGCAT
97978398 ATCATGTGCAT
1 ATCATGTGCAT
*
97978409 ATCA--TACAT
1 ATCATGTGCAT
*
97978418 TTCATGTGCAT
1 ATCATGTGCAT
97978429 ATCAT
1 ATCAT
97978434 ACATACCATA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:97978513 original size:25 final size:25
Alignment explanation
Indices: 97978481--97978528 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97978471 ATACATAAAC
* * *
97978481 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
97978506 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
97978529 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:97979721 original size:27 final size:27
Alignment explanation
Indices: 97979686--97979742 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
97979676 GGGCATATTC
* *
97979686 GTCATTTTATCATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
97979713 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
97979740 GTC
1 GTC
97979743 TTTTTACCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:97979840 original size:27 final size:27
Alignment explanation
Indices: 97979819--97980111 Score: 158
Period size: 27 Copynumber: 10.9 Consensus size: 27
97979809 AAGGGTATTT
*
97979819 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
97979846 TAGTAATTCTGTAAATC-AAGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
97979872 -CGATAATTATGTAAATC-AGGGGTAAAA
1 TAG-TAATTCTGTAAATCGA-GGGTAAAA
** * *
97979899 CGGTAATTATGTAAAT-TAGGGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAA
** *
97979926 CGGTAATTCTGTAAGTCGAGGGT-AAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
97979952 GCGATAATTATGTAAATC-AGGGGTAAAA
1 TAG-TAATTCTGTAAATCGA-GGGTAAAA
** * *
97979980 CGGTAATTATGTAAAT-TAGGGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAA
** *
97980007 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
97980034 -CGATAATTATGTAAATC-AGGGGTAAAA
1 TAG-TAATTCTGTAAATCGA-GGGTAAAA
* * *
97980061 -CGATAATTATGTAAAT-TAGGGGTAAAA
1 TAG-TAATTCTGTAAATCGA-GGGTAAAA
** *
97980088 CGGTAATTCTGTAAATCGGGGGTA
1 TAGTAATTCTGTAAATCGAGGGTA
97980112 CTTTAGTAAT
Statistics
Matches: 226, Mismatches: 25, Indels: 30
0.80 0.09 0.11
Matches are distributed among these distances:
25 1 0.00
26 29 0.13
27 188 0.83
28 8 0.04
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:97979949 original size:54 final size:55
Alignment explanation
Indices: 97979821--97980111 Score: 346
Period size: 54 Copynumber: 5.4 Consensus size: 55
97979811 GGGTATTTTA
* ** * * *
97979821 GTAATTTTGTAAATCGA-GGGTAAAATAGTAATTCTGTAAATCA-AGGTAAAACG
1 GTAATTATGTAAATCGAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACG
*
97979874 ATAATTATGTAAATC-AGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTATGTAAATCGAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACG
* * * * *
97979928 GTAATTCTGTAAGTCGA-GGGTAAAGCGATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTATGTAAATCGAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACG
* * * *
97979982 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTGT-AAGTCGAGGGTAAAACG
1 GTAATTATGTAAATCGAGGGGTAAAACGGTAATTATGTAAATTAG-GGGTAAAACG
* *
97980036 ATAATTATGTAAATC-AGGGGTAAAACGATAATTATGTAAATTAGGGGTAAAACG
1 GTAATTATGTAAATCGAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACG
*
97980090 GTAATTCTGTAAATCG-GGGGTA
1 GTAATTATGTAAATCGAGGGGTA
97980112 CTTTAGTAAT
Statistics
Matches: 201, Mismatches: 29, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
52 1 0.00
53 39 0.19
54 156 0.78
55 5 0.02
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (55 bp):
GTAATTATGTAAATCGAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACG
Found at i:97979979 original size:81 final size:81
Alignment explanation
Indices: 97979821--97980111 Score: 469
Period size: 81 Copynumber: 3.6 Consensus size: 81
97979811 GGGTATTTTA
* * ** *
97979821 GTAATTTTGTAAA-TCGAGGGTAAAATAGTAATTCTGTAAATC-AAGGTAAAACGATAATTATGT
1 GTAATTATGTAAATTAG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGT
97979884 AAATCAGGGGTAAAACG
65 AAATCAGGGGTAAAACG
* *
97979901 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAGCGATAATTATGTA
1 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
97979966 AATCAGGGGTAAAACG
66 AATCAGGGGTAAAACG
*
97979982 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTA
1 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
97980047 AATCAGGGGTAAAACG
66 AATCAGGGGTAAAACG
* *
97980063 ATAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAATCGGGGGTA
1 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
97980112 CTTTAGTAAT
Statistics
Matches: 198, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
80 34 0.17
81 164 0.83
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (81 bp):
GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
AATCAGGGGTAAAACG
Found at i:97980138 original size:27 final size:27
Alignment explanation
Indices: 97980108--97980206 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
97980098 GTAAATCGGG
*
97980108 GGTACTTT-AGTAATTTTACAAGTCGAA
1 GGTA-TTTCAGTAATTTTACAAATCGAA
* * *
97980135 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCAGTAATTTTACAAATCGAA
* *
97980162 GGTATTTCAGTATTTTTACAAA-CTAA
1 GGTATTTCAGTAATTTTACAAATCGAA
*
97980188 GGGTATTTCGGTAATTTTA
1 -GGTATTTCAGTAATTTTA
97980207 GTAAACTAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.08
27 54 0.92
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAATCGAA
Found at i:97980146 original size:54 final size:53
Alignment explanation
Indices: 97980100--97980204 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 53
97980090 GTAATTCTGT
* *
97980100 AAATCGGGGGTACTTT-AGTAATTTTACAAGTCGAA-GGTATTTCGGTAAATTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCGGT-AATTTAC
* *
97980154 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTT
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAATTT
97980205 TAGTAAACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
53 11 0.24
54 34 0.76
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.37
Consensus pattern (53 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAATTTAC
Found at i:97980220 original size:27 final size:27
Alignment explanation
Indices: 97980116--97980221 Score: 74
Period size: 27 Copynumber: 3.9 Consensus size: 27
97980106 GGGGTACTTT
* *
97980116 AGTAATTTTACAAGTCGAAG-GTATTTC
1 AGTAATTTTACAA-ACTAAGAGTATTTC
* * * *
97980143 GGTAAATTTACAAA-TCGAGGGTATTTC
1 AGTAATTTTACAAACT-AAGAGTATTTC
* *
97980170 AGTATTTTTACAAACTAAGGGTATTTC
1 AGTAATTTTACAAACTAAGAGTATTTC
* *
97980197 GGTAATTTTAGTAAACTAA-AGTATT
1 AGTAATTTTA-CAAACTAAGAGTATT
97980222 CTAAACAGGG
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
26 2 0.03
27 52 0.84
28 8 0.13
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (27 bp):
AGTAATTTTACAAACTAAGAGTATTTC
Found at i:97982491 original size:46 final size:45
Alignment explanation
Indices: 97982394--97982559 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 45
97982384 GTGTCGATGC
* *
97982394 CATGTCCC-AACAGGGTCTTACACTGGC--ACATCTCGTAGCCAATG
1 CATGTCCCAAACA-TGTCTTACACTGGCTTACGTCTCG-AGCCAATG
*
97982438 CATGTCCCAAACATGTCTTACACTGGCTTACGTCACGAGGCCAATG
1 CATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGA-GCCAATG
* * * * * *
97982484 CATGTCCCAAACATGTCTCACACTAGCTTATGTCTCAATGTCGATG
1 CATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGA-GCCAATG
*
97982530 CCATGTCCCATACATGGTCTTACACTGGCT
1 -CATGTCCCAAACAT-GTCTTACACTGGCT
97982560 CTCATAATGT
Statistics
Matches: 102, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
44 21 0.21
45 5 0.05
46 51 0.50
47 13 0.13
48 12 0.12
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (45 bp):
CATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAGCCAATG
Found at i:97984442 original size:32 final size:32
Alignment explanation
Indices: 97984401--97984466 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
97984391 GGGTGTTCGA
97984401 CACTTACACCCATATAAAGCCTCATAAGGCGC
1 CACTTACACCCATATAAAGCCTCATAAGGCGC
97984433 CACTTACACCCATATAAAGCCTCATAAGGCGC
1 CACTTACACCCATATAAAGCCTCATAAGGCGC
97984465 CA
1 CA
97984467 TTTTCAAACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.35, C:0.35, G:0.12, T:0.18
Consensus pattern (32 bp):
CACTTACACCCATATAAAGCCTCATAAGGCGC
Found at i:97990075 original size:49 final size:47
Alignment explanation
Indices: 97989965--97990087 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 47
97989955 TAATGTTGAG
* * * *
97989965 GCCATGTCCCAGACATGGTCTTACACTGGCTCATTCATCAAGTCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATTAATCAAGGCAAC
* * * *
97990012 GCCATGTCCTAGACATTGTCTTACACTGACT-ATCTAAATCGAGGCTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTCAT-T-AATCAAGGC-AAC
97990061 GCCATGTCCCAGACATGGTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
97990088 AGCTCTCACA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 2 0.03
47 29 0.46
48 6 0.10
49 26 0.41
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCATTAATCAAGGCAAC
Found at i:97990214 original size:46 final size:46
Alignment explanation
Indices: 97990151--97990324 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
97990141 ACATCTTGTA
* * * *
97990151 GCCGGTGCATGTCCCAGACATGTCTTACATTGGCTTACGTCACGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCACAAG
* * *
97990197 GCCGATGCATGTCCCAGACATGTCTCACACTAGCTTACGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCACAAG
* ** * * * * *
97990243 GCCTATGCCATGTAACAGACATGGTCTTACACTAACTCT-CATAATATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACGTCACAAG
* *
97990291 GCCGATGCATGTCCCAGACATGTTTTACAATAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
97990325 ATACAAATGA
Statistics
Matches: 101, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
46 55 0.54
47 24 0.24
48 21 0.21
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCACAAG
Found at i:97994214 original size:19 final size:19
Alignment explanation
Indices: 97994190--97994226 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
97994180 TTATTTTAAG
* *
97994190 ATTTATCTACCTAAATAAT
1 ATTTATATACCAAAATAAT
97994209 ATTTATATACCAAAATAA
1 ATTTATATACCAAAATAA
97994227 CTTTAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTTATATACCAAAATAAT
Found at i:97996692 original size:50 final size:51
Alignment explanation
Indices: 97996615--97996723 Score: 186
Period size: 50 Copynumber: 2.2 Consensus size: 51
97996605 GACCATGGCA
97996615 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
*
97996666 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
97996716 ACAAGTGA
1 ACAAGTGA
97996724 AATGTAACAC
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
50 45 0.82
51 10 0.18
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:97998174 original size:28 final size:28
Alignment explanation
Indices: 97998109--97998209 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
97998099 TATAGTGATC
*
97998109 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
97998138 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
97998166 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
97998196 CGCACACTTAGTGC
1 CGCACACTTAGTGC
97998210 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:97999943 original size:31 final size:31
Alignment explanation
Indices: 97999872--98000017 Score: 208
Period size: 31 Copynumber: 4.7 Consensus size: 31
97999862 GGCTGTCACA
*
97999872 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
97999903 TG-AAAGTGGTAGCTTCTGCTACCTGGTCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
97999933 TGAAAAGTGGTAG-TTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTT-CGGCTACCTGATCAG
*
97999964 TGAAATA-TGGTAGCTCCGGCTACCTGATCAG
1 TGAAA-AGTGGTAGCTTCGGCTACCTGATCAG
*
97999995 TGAATAGTGGTAGCTTCGGCTAC
1 TGAAAAGTGGTAGCTTCGGCTAC
98000018 AAGTGACAAG
Statistics
Matches: 103, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
30 31 0.30
31 70 0.68
32 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
Found at i:98000160 original size:46 final size:43
Alignment explanation
Indices: 98000093--98000252 Score: 139
Period size: 42 Copynumber: 3.7 Consensus size: 43
98000083 TGCTACTGTA
* * *
98000093 TAAGACCATATCTGGGATATGGCATCAGTGAGATATG-TTATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCA--GAGATATGAATA-T-GTG
* *
98000139 TAAGACCGTAGCTGGGCTATGGCATC-GATATATGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCAGAGATATGAATATGTG
** * *
98000181 TAAGACCATAGCTGGGCTATGGCATCA-TTATGTGAAGATGTG
1 TAAGACCATAGCTGGGCTATGGCATCAGAGATATGAATATGTG
* * **
98000223 TAAAACCATAGTTGAACTATGGCATC-GAGA
1 TAAGACCATAGCTGGGCTATGGCATCAGAGA
98000253 AAACGAAGTA
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
42 63 0.66
43 8 0.08
44 2 0.02
46 23 0.24
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (43 bp):
TAAGACCATAGCTGGGCTATGGCATCAGAGATATGAATATGTG
Found at i:98000193 original size:42 final size:43
Alignment explanation
Indices: 98000136--98000250 Score: 153
Period size: 42 Copynumber: 2.7 Consensus size: 43
98000126 TATGTTATTC
* *
98000136 GTGTAAGACCGTAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
98000178 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* * **
98000220 GTGTAAAACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
98000251 GAAAACGAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
41 1 0.02
42 62 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:98004597 original size:19 final size:19
Alignment explanation
Indices: 98004573--98004613 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
98004563 TGATTTATTG
98004573 TAAGATTTATCTACCGAAA
1 TAAGATTTATCTACCGAAA
*
98004592 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCGAAA
98004611 TAA
1 TAA
98004614 CTTTACAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.34
Consensus pattern (19 bp):
TAAGATTTATCTACCGAAA
Found at i:98005351 original size:22 final size:22
Alignment explanation
Indices: 98005323--98005367 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
98005313 AGGTGGGAGA
98005323 TTGTTGGGAAATGTGCCCATAT
1 TTGTTGGGAAATGTGCCCATAT
98005345 TTGTTGGGAAATGTGCCCATAT
1 TTGTTGGGAAATGTGCCCATAT
98005367 T
1 T
98005368 GTAGTAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.13, G:0.27, T:0.38
Consensus pattern (22 bp):
TTGTTGGGAAATGTGCCCATAT
Found at i:98005380 original size:22 final size:22
Alignment explanation
Indices: 98005331--98005380 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
98005321 GATTGTTGGG
* *
98005331 AAATGTGCCCATATTTGTTGGG
1 AAATGTGCCCATATTTGTAGGA
*
98005353 AAATGTGCCCATA-TTGTAGTA
1 AAATGTGCCCATATTTGTAGGA
98005374 AACATGT
1 AA-ATGT
98005381 AATTGTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (22 bp):
AAATGTGCCCATATTTGTAGGA
Found at i:98005466 original size:16 final size:16
Alignment explanation
Indices: 98005445--98005475 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98005435 TTCACTATTA
*
98005445 TGTCTTTTGTATTTTT
1 TGTCTTTTATATTTTT
98005461 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
98005476 GCATGCATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.10, T:0.74
Consensus pattern (16 bp):
TGTCTTTTATATTTTT
Found at i:98007032 original size:39 final size:39
Alignment explanation
Indices: 98006989--98007079 Score: 139
Period size: 39 Copynumber: 2.3 Consensus size: 39
98006979 CCAGACATAT
* *
98006989 TTCCAGCACTTAGCCTGC-GAACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCAG-ACCTTAAGTCCGGATATAA
98007028 TTCCAGCACATAGCCTGCAGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCAGACCTTAAGTCCGGATATAA
*
98007067 TTCCAACACATAG
1 TTCCAGCACATAG
98007080 TGTAATAGCC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
39 47 0.98
40 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCAGACCTTAAGTCCGGATATAA
Found at i:98022540 original size:55 final size:55
Alignment explanation
Indices: 98022456--98022569 Score: 210
Period size: 55 Copynumber: 2.1 Consensus size: 55
98022446 GAAAAAGCCC
**
98022456 GTTTGAACCTTGGGAATAGGTTAGAATACAAGTGACATGTCACTAAGATATTTGA
1 GTTTGAACCTTGGGAATAAATTAGAATACAAGTGACATGTCACTAAGATATTTGA
98022511 GTTTGAACCTTGGGAATAAATTAGAATACAAGTGACATGTCACTAAGATATTTGA
1 GTTTGAACCTTGGGAATAAATTAGAATACAAGTGACATGTCACTAAGATATTTGA
98022566 GTTT
1 GTTT
98022570 CGAGCTCGTT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (55 bp):
GTTTGAACCTTGGGAATAAATTAGAATACAAGTGACATGTCACTAAGATATTTGA
Found at i:98025827 original size:40 final size:40
Alignment explanation
Indices: 98025765--98025942 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
98025755 AAGCCAAGTA
* * * *
98025765 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
98025804 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
98025844 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
98025884 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
98025924 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
98025943 TTATCATCCA
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 13 0.10
40 114 0.90
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:98029091 original size:28 final size:28
Alignment explanation
Indices: 98029026--98029126 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
98029016 ATAGTGAATC
*
98029026 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
98029055 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
98029083 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
98029113 CGCACACTTAGTGC
1 CGCACACTTAGTGC
98029127 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:98037045 original size:28 final size:28
Alignment explanation
Indices: 98036980--98037080 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
98036970 ATAGTGAATC
*
98036980 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
98037009 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
98037037 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
98037067 CGCACACTTAGTGC
1 CGCACACTTAGTGC
98037081 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:98038329 original size:71 final size:71
Alignment explanation
Indices: 98038213--98038361 Score: 298
Period size: 71 Copynumber: 2.1 Consensus size: 71
98038203 NNNNNNNNNN
98038213 TACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCT
1 TACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCT
98038278 CTTGTC
66 CTTGTC
98038284 TACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCT
1 TACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCT
98038349 CTTGTC
66 CTTGTC
98038355 TACATGG
1 TACATGG
98038362 GATACATCTC
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 78 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (71 bp):
TACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCT
CTTGTC
Found at i:98038399 original size:71 final size:70
Alignment explanation
Indices: 98038213--98038395 Score: 228
Period size: 71 Copynumber: 2.6 Consensus size: 70
98038203 NNNNNNNNNN
* * * *
98038213 TACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCT
1 TACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTATCTTTCACGTAGCTCT
98038278 CTTGTC
65 CTTGTC
* * * *
98038284 TACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCT
1 TACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTATCTTTCACGTAGCTCT
98038349 CTTGTC
65 CTTGTC
* *
98038355 TACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 TACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
98038396 TACAGGGTGT
Statistics
Matches: 105, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.21
69 1 0.01
70 1 0.01
71 81 0.77
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (70 bp):
TACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTC
TTGTC
Found at i:98045847 original size:71 final size:71
Alignment explanation
Indices: 98045763--98045926 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
98045753 CGATTTGTCT
98045763 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98045828 CTTTCA
66 CTTTCA
98045834 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98045899 CTTTCA
66 CTTTCA
98045905 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
98045927 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:98045964 original size:71 final size:70
Alignment explanation
Indices: 98045763--98045960 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
98045753 CGATTTGTCT
* * * *
98045763 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
98045828 CTTTCA
65 CTTTCA
* * * *
98045834 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
98045899 CTTTCA
65 CTTTCA
* *
98045905 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
98045961 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:98051636 original size:27 final size:28
Alignment explanation
Indices: 98051606--98051673 Score: 111
Period size: 27 Copynumber: 2.5 Consensus size: 28
98051596 AGTGAGTCCT
*
98051606 CACACTTAGTGCTATATAATC-AACTCG
1 CACACTTAGTGCTACATAATCAAACTCG
*
98051633 CACACTTAGTGCTACATGATCAAACTCG
1 CACACTTAGTGCTACATAATCAAACTCG
98051661 CACACTTAGTGCT
1 CACACTTAGTGCT
98051674 GTACAAGTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 19 0.50
28 19 0.50
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (28 bp):
CACACTTAGTGCTACATAATCAAACTCG
Found at i:98058032 original size:40 final size:40
Alignment explanation
Indices: 98057970--98058190 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
98057960 ATTCGGATTG
*
98057970 ATAATCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
*
98058009 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
* * * *
98058049 ATAACCGGGCCAAGTCTCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
* * * *
98058089 ATAACCGGGCTAAGTCCCGAAGACAATGGTGCGAGTTACT
1 ATAACCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
** *
98058129 ATAACCGGGCTAAGTA-TTGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAG-ACCCGAAGGCATTTGTGCGAGTTA-CT
*
98058169 ATATCC-GGCTAA-ACCCTGAAGG
1 ATAACCGGGCTAAGACCC-GAAGG
98058191 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
37 1 0.01
39 25 0.16
40 130 0.83
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
Found at i:98061362 original size:13 final size:13
Alignment explanation
Indices: 98061346--98061378 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
98061336 TTTGATTAAA
*
98061346 TTAGTTAATTAGT
1 TTAGATAATTAGT
98061359 TTAGATAATTAGT
1 TTAGATAATTAGT
98061372 TTA-ATAA
1 TTAGATAA
98061379 ACAAACACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:98066655 original size:6 final size:6
Alignment explanation
Indices: 98066644--98066695 Score: 88
Period size: 6 Copynumber: 8.8 Consensus size: 6
98066634 TTCCTCTTAT
*
98066644 TTTTTA TTTTTA -TTTTA TTTTTA TTTTTA TTTTTA TTTTTA TGTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
98066691 TTTTT
1 TTTTT
98066696 CGTTATAAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
5 5 0.12
6 38 0.88
ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:98069483 original size:18 final size:18
Alignment explanation
Indices: 98069460--98069498 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
98069450 GTCTCACGGA
*
98069460 TCAAGTGAATAAGTCAAG
1 TCAAGTGAATAAATCAAG
98069478 TCAAGTGAATAAATCAAG
1 TCAAGTGAATAAATCAAG
98069496 TCA
1 TCA
98069499 GGTAACAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.23
Consensus pattern (18 bp):
TCAAGTGAATAAATCAAG
Found at i:98069615 original size:13 final size:13
Alignment explanation
Indices: 98069599--98069631 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
98069589 TTTGATTAAA
*
98069599 TTAGTTAATTAGT
1 TTAGATAATTAGT
98069612 TTAGATAATTAGT
1 TTAGATAATTAGT
98069625 TTA-ATAA
1 TTAGATAA
98069632 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:98075673 original size:31 final size:31
Alignment explanation
Indices: 98075635--98075698 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
98075625 CCTTTTCATA
*
98075635 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAACCT
**
98075666 TTTCATATTTCATATTACTGGGCCGAAACCT
1 TTTCATATTTCATAACACTGGGCCGAAACCT
98075697 TT
1 TT
98075699 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAACCT
Found at i:98075943 original size:24 final size:24
Alignment explanation
Indices: 98075906--98076009 Score: 167
Period size: 23 Copynumber: 4.4 Consensus size: 24
98075896 CTGGAGGCCT
*
98075906 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
98075931 AGCCCTTTTAATAACTGGGACATA
1 AGCCCTTTTAATAACTGGGGCATA
98075955 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
98075978 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
98076001 AGCCCTTTT
1 AGCCCTTTT
98076010 GCACTTCCTC
Statistics
Matches: 75, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
23 45 0.60
24 26 0.35
25 4 0.05
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:98076084 original size:20 final size:20
Alignment explanation
Indices: 98076059--98076123 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
98076049 ATGAATACAC
98076059 CATGTGCATATCATACATAT
1 CATGTGCATATCATACATAT
*
98076079 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAT
*
98076099 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAT
98076119 CATGT
1 CATGT
98076124 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:98076090 original size:11 final size:11
Alignment explanation
Indices: 98076059--98076112 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
98076049 ATGAATACAC
98076059 CATGTGCATAT
1 CATGTGCATAT
*
98076070 CA--TACATAT
1 CATGTGCATAT
98076079 CATGTGCATAT
1 CATGTGCATAT
* *
98076090 CA--TACATGT
1 CATGTGCATAT
98076099 CATGTGCATAT
1 CATGTGCATAT
98076110 CAT
1 CAT
98076113 ACATACCATG
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
CATGTGCATAT
Found at i:98076192 original size:25 final size:25
Alignment explanation
Indices: 98076160--98076209 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
98076150 ATATTTAAAC
* * *
98076160 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAAAACGGTCATTTTCA
98076185 CCTAGGGGCAAAACGGTCATTTTCA
1 CCTAGGGGCAAAACGGTCATTTTCA
98076210 TATTATAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTCA
Found at i:98078654 original size:19 final size:18
Alignment explanation
Indices: 98078617--98078660 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
98078607 ATACTTACAG
98078617 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
98078634 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
98078653 TACTAATT
1 TAATAATT
98078661 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:98079987 original size:39 final size:39
Alignment explanation
Indices: 98079862--98080005 Score: 173
Period size: 39 Copynumber: 3.7 Consensus size: 39
98079852 TTCAGTGATG
*
98079862 TATATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
98079901 TATATTCGAACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * * *
98079940 TATATCCGGACTTAAGGTCCTCAGGCTACGTGTTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * *
98079979 TATGTCCGGGC-TAGAGTCCCGCAGGCT
1 TATATCCGGACTTAGGGT-CCGCAGGCT
98080006 TCGAGCTGGT
Statistics
Matches: 89, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 4 0.04
39 85 0.96
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:98089234 original size:39 final size:39
Alignment explanation
Indices: 98089180--98089305 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
98089170 TTCAGTGATG
98089180 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
98089219 TATATTCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * *
98089258 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTAGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
98089297 TATGTCCGG
1 TATATCCGG
98089306 GCTAAAGTCC
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:98089319 original size:39 final size:39
Alignment explanation
Indices: 98089180--98089323 Score: 146
Period size: 39 Copynumber: 3.7 Consensus size: 39
98089170 TTCAGTGATG
** * * *
98089180 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTAGAAA
* ** * * *
98089219 TATATTCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTAGAAA
*
98089258 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTAGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTAGAAA
* *
98089297 TATGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATATCCGGACTTAAAGT-CCGCAGGCT
98089324 TCAAGCTGGT
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 5 0.05
39 90 0.95
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTAGAAA
Found at i:98089319 original size:78 final size:78
Alignment explanation
Indices: 98089180--98089323 Score: 191
Period size: 78 Copynumber: 1.8 Consensus size: 78
98089170 TTCAGTGATG
* * * * * **
98089180 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATTCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTAGAAATATATCCGGACTTAAAGTCCGCAGGC
98089245 TATGTGCTGGAAT
66 TATGTGCTGGAAT
* *
98089258 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTAGAAATATGTCCGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTAGAAATATATCCGGACTTAAAGT-CCGCAGG
98089322 CT
65 CT
98089324 TCAAGCTGGT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
77 4 0.07
78 52 0.93
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTAGAAATATATCCGGACTTAAAGTCCGCAGGC
TATGTGCTGGAAT
Found at i:98089332 original size:78 final size:78
Alignment explanation
Indices: 98089180--98089343 Score: 181
Period size: 78 Copynumber: 2.1 Consensus size: 78
98089170 TTCAGTGATG
* * * * * **
98089180 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATTCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTAGAAATATATCCGGACTTAAAGTCCGCAGGC
**
98089245 TATGTGCTGGAAT
66 TATAAGCTGGAAT
* *
98089258 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTAGAAATATGTCCGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTAGAAATATATCCGGACTTAAAGT-CCGCAGG
*
98089322 CT-TCAAGCTGGTAT
65 CTAT-AAGCTGGAAT
98089336 TATA-CCGG
1 TATATCCGG
98089344 GTTTAAATTC
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
77 9 0.12
78 63 0.88
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTAGAAATATATCCGGACTTAAAGTCCGCAGGC
TATAAGCTGGAAT
Found at i:98093064 original size:30 final size:30
Alignment explanation
Indices: 98093028--98093090 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
98093018 ATTTATTTTA
98093028 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTATTTTAGAA-GCAT
*
98093058 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAT
98093088 TTG
1 TTG
98093091 CTTATTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAT
Found at i:98098251 original size:50 final size:50
Alignment explanation
Indices: 98098145--98098323 Score: 236
Period size: 49 Copynumber: 3.6 Consensus size: 50
98098135 GTATGCATAA
*
98098145 TAGCCTGCACTTAGTACTACACATGCGA-CAAATTATCTGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACATGCGACCTAATTATCTGGTACACGTAG
* * * ** *
98098194 TAGCCTGCACTTAATACTACACACGTGACCTAACCATCTGATACACGTAG
1 TAGCCTGCACTTAGTACTACACATGCGACCTAATTATCTGGTACACGTAG
* * *
98098244 TAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTATAAGTAG
1 TAGCCTGCACTTAGTACTACACATGCGACCTAATTATCTGGTACACGTAG
* *
98098293 TAGCCTGTACTTAGTACTACACATGTGACCT
1 TAGCCTGCACTTAGTACTACACATGCGACCT
98098324 CACAATAGAT
Statistics
Matches: 110, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
49 66 0.60
50 44 0.40
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGCCTGCACTTAGTACTACACATGCGACCTAATTATCTGGTACACGTAG
Found at i:98098305 original size:99 final size:99
Alignment explanation
Indices: 98098145--98098323 Score: 295
Period size: 99 Copynumber: 1.8 Consensus size: 99
98098135 GTATGCATAA
* *
98098145 TAGCCTGCACTTAGTACTACACATGCGACAAATTATCTGGTACACGTAGTAGCCTGCACTTAATA
1 TAGCCTGCACTTAGTACTACACATGCGACAAATTATCCGGTACAAGTAGTAGCCTGCACTTAATA
98098210 CTACACACGTGACCTAACCATCTGATACACGTAG
66 CTACACACGTGACCTAACCATCTGATACACGTAG
* * * *
98098244 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTATAAGTAGTAGCCTGTACTTAGTA
1 TAGCCTGCACTTAGTACTACACATGCGACAAATTATCCGGTACAAGTAGTAGCCTGCACTTAATA
*
98098309 CTACACATGTGACCT
66 CTACACACGTGACCT
98098324 CACAATAGAT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
99 73 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (99 bp):
TAGCCTGCACTTAGTACTACACATGCGACAAATTATCCGGTACAAGTAGTAGCCTGCACTTAATA
CTACACACGTGACCTAACCATCTGATACACGTAG
Found at i:98098579 original size:27 final size:27
Alignment explanation
Indices: 98098549--98098602 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
98098539 AGGTACAACC
* *
98098549 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
98098576 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
98098603 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:98105514 original size:39 final size:39
Alignment explanation
Indices: 98105460--98105612 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
98105450 GAATGTTCGA
*
98105460 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
98105499 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
98105538 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
98105577 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
98105613 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:98105628 original size:40 final size:39
Alignment explanation
Indices: 98105461--98105642 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
98105451 AATGTTCGAG
* *
98105461 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
98105500 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
98105539 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
98105578 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
98105618 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
98105643 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:98108022 original size:30 final size:29
Alignment explanation
Indices: 98107987--98108043 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
98107977 ATAGTATCAT
* *
98107987 ATCTTGGTTTTCTTTATTCTGGGTTTCTCA
1 ATCTTGGATTTCATTATT-TGGGTTTCTCA
*
98108017 ATCTTGGATTTCATTATTTGGTTTTCT
1 ATCTTGGATTTCATTATTTGGGTTTCT
98108044 TTATCTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 8 0.33
30 16 0.67
ACGTcount: A:0.12, C:0.14, G:0.16, T:0.58
Consensus pattern (29 bp):
ATCTTGGATTTCATTATTTGGGTTTCTCA
Found at i:98112332 original size:46 final size:45
Alignment explanation
Indices: 98112274--98112448 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
98112264 GTCATTCTGT
*
98112274 AGCCGATGCATGTCCCAGACATGTCTTACACT-G-ACTTACTTCTCG
1 AGCCGATGCATGTCCCAGACATGTCTTACACTAGCAC-T-CATCTCG
*
98112319 AGCCTGATGCATGTCCCAAACATGTCTTACACTAGCACTCATCTCG
1 AGCC-GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCG
* * * * *
98112365 ATGCCGATGCCATGTCCCAGACATGATCTTACAATGGCTCTCATAATATG
1 A-GCCGATG-CATGTCCCAGACATG-TCTTACACTAGCACTCAT-CT-CG
* * *
98112415 -GCTGATCCATGTCCCAAACATGTCTTACACTAGC
1 AGCCGATGCATGTCCCAGACATGTCTTACACTAGC
98112449 TCACATAAGT
Statistics
Matches: 109, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
45 4 0.04
46 48 0.44
47 33 0.30
48 22 0.20
49 1 0.01
50 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (45 bp):
AGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCG
Found at i:98114539 original size:32 final size:32
Alignment explanation
Indices: 98114503--98114568 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
98114493 AATTGAGTAG
98114503 TGAATTGGATGGTATTTGGATGTTATGGAATA
1 TGAATTGGATGGTATTTGGATGTTATGGAATA
98114535 TGAATTGGATGGTATTTGGATGTTATGGAATA
1 TGAATTGGATGGTATTTGGATGTTATGGAATA
98114567 TG
1 TG
98114569 TATGAAATGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.27, C:0.00, G:0.32, T:0.41
Consensus pattern (32 bp):
TGAATTGGATGGTATTTGGATGTTATGGAATA
Found at i:98114562 original size:16 final size:16
Alignment explanation
Indices: 98114511--98114562 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
98114501 AGTGAATTGG
98114511 ATGGTATTTGGATGTT
1 ATGGTATTTGGATGTT
* * * *
98114527 ATGGAATATGAAT-TGG
1 ATGGTATTTGGATGT-T
98114543 ATGGTATTTGGATGTT
1 ATGGTATTTGGATGTT
98114559 ATGG
1 ATGG
98114563 AATATGTATG
Statistics
Matches: 26, Mismatches: 8, Indels: 4
0.68 0.21 0.11
Matches are distributed among these distances:
15 1 0.04
16 24 0.92
17 1 0.04
ACGTcount: A:0.25, C:0.00, G:0.33, T:0.42
Consensus pattern (16 bp):
ATGGTATTTGGATGTT
Found at i:98118284 original size:24 final size:24
Alignment explanation
Indices: 98118250--98118306 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
98118240 TAAGGAGGTC
*
98118250 TAGGTCCACTTACCGACCCAACCG
1 TAGGTCCACTTACCGACCCAACCA
* *
98118274 TAGGTCTACTTACCGACCCAATCA
1 TAGGTCCACTTACCGACCCAACCA
98118298 TAGGTCCAC
1 TAGGTCCAC
98118307 AGTCGTCTCG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.26, C:0.37, G:0.16, T:0.21
Consensus pattern (24 bp):
TAGGTCCACTTACCGACCCAACCA
Found at i:98119127 original size:13 final size:13
Alignment explanation
Indices: 98119089--98119127 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
98119079 ATAACGGCAT
98119089 AGAAAGAAAGAAAGA
1 AGAAA-AAA-AAAGA
*
98119104 AGGAAAAAAAAGA
1 AGAAAAAAAAAGA
98119117 AGAAAAAAAAA
1 AGAAAAAAAAA
98119128 TAACCGTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 15 0.68
14 3 0.14
15 4 0.18
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
AGAAAAAAAAAGA
Found at i:98126033 original size:27 final size:27
Alignment explanation
Indices: 98125979--98126035 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
98125969 CATCTCATAA
*
98125979 GGGCATATCAGTCATTTTACCATGTAG
1 GGGCATATCAGTCATTTTACAATGTAG
*
98126006 GGGCATTTCAGTCATTTTATCAAT-TAG
1 GGGCATATCAGTCATTTTA-CAATGTAG
98126033 GGG
1 GGG
98126036 GTCTAGGTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 24 0.89
28 3 0.11
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (27 bp):
GGGCATATCAGTCATTTTACAATGTAG
Found at i:98128692 original size:79 final size:79
Alignment explanation
Indices: 98128535--98128757 Score: 274
Period size: 79 Copynumber: 2.8 Consensus size: 79
98128525 TCGAATGATG
* * *
98128535 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-AAGTTACTATATCCGGGCTAAG-TCCGAAGGCATT
*
98128599 TGTGCGAGTTACTAAA
64 GGTGCGAGTTACTAAA
*
98128615 TTCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTA-ATTCCGGGCTAAG-CCTGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCC-GAAGGCAT
98128677 TGGTGCGAGTTACTAAA
63 TGGTGCGAGTTACTAAA
** * * *
98128694 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGT-CCGAAGGCATT
98128758 TGAACGAGTA
Statistics
Matches: 124, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
78 3 0.02
79 66 0.53
80 45 0.36
81 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCGAAGGCATTGG
TGCGAGTTACTAAA
Found at i:98128766 original size:40 final size:39
Alignment explanation
Indices: 98128536--98128759 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 39
98128526 CGAATGATGT
* * *
98128536 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
*
98128576 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
98128615 TTCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
98128656 CCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
98128694 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
98128735 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
98128760 AACGAGTAGC
Statistics
Matches: 158, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
39 33 0.21
40 115 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:98128778 original size:119 final size:120
Alignment explanation
Indices: 98128535--98128762 Score: 277
Period size: 119 Copynumber: 1.9 Consensus size: 120
98128525 TCGAATGATG
* *
98128535 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* **
98128600 GTGCGAGTTACTAAATTCGGACTAAGATCCGAAGGCATTTGTGCAAGTTACTAAT
66 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACAAGTTACTAAT
* * * **
98128655 TCCGGGCTAAG-CCTGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
* *
98128717 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAAC
64 TTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAAC
98128763 GAGTAGCTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
118 2 0.02
119 71 0.77
120 19 0.21
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACAAGTTACTAAT
Found at i:98128781 original size:79 final size:79
Alignment explanation
Indices: 98128542--98128782 Score: 269
Period size: 79 Copynumber: 3.0 Consensus size: 79
98128532 ATGTCCGGGC
* *
98128542 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-AAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* *
98128605 AGTTACTAAATTCGGAC
64 AGTTACTAAATCCGG-T
* *
98128622 TAAGAT-CCGAAGGCATTTGTGCAAGTTACTA-ATTCCGGGCTAAG-CCTGAAGGCATTGGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCG
98128684 AGTTACTAAATCCGGGT
64 AGTTACTAAATCC-GGT
* * * **
98128701 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
98128766 -TAGCTATATCCGGT
66 TTA-CTAAATCCGGT
98128780 TAA
1 TAA
98128783 ATTCGAAGGT
Statistics
Matches: 138, Mismatches: 14, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
78 1 0.01
79 73 0.53
80 56 0.41
81 8 0.06
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTAAATCCGGT
Found at i:98131240 original size:40 final size:40
Alignment explanation
Indices: 98131112--98131242 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
98131102 TATGCTGGAA
* * *
98131112 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
98131152 GCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
* * *
98131192 ATTCTATCCGGGCTAAGACCTGAAGGCATTTGTGC-ACATG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
98131232 ATTATATCCGG
1 ATTATATCCGG
98131243 TTATATTCCG
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:98139974 original size:40 final size:39
Alignment explanation
Indices: 98139892--98140113 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 39
98139882 TCGAATGATG
* * *
98139892 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAA
*
98139931 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
98139971 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
98140010 TCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
98140048 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
98140089 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
98140114 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 10, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
37 14 0.08
38 21 0.13
39 31 0.19
40 92 0.55
41 9 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:98140051 original size:77 final size:78
Alignment explanation
Indices: 98139892--98140111 Score: 302
Period size: 77 Copynumber: 2.8 Consensus size: 78
98139882 TCGAATGATG
* * * *
98139892 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAGACCCGAAGGCA-TT
98139956 GTGCGAGTTACTAAA
64 GTGCGAGTTACTAAA
*
98139971 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-ATCCGGGCTAAG-CCCGAAGGCATTG
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTG
98140034 TGCGAGTTACTAAA
65 TGCGAGTTACTAAA
* * * *
98140048 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
98140112 TGAACGAGTA
Statistics
Matches: 127, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
76 1 0.01
77 51 0.40
78 19 0.15
79 33 0.26
80 16 0.13
81 7 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTGT
GCGAGTTACTAAA
Found at i:98140105 original size:117 final size:118
Alignment explanation
Indices: 98139892--98140113 Score: 308
Period size: 117 Copynumber: 1.9 Consensus size: 118
98139882 TCGAATGATG
* * *
98139892 TCCGGGCTAAGTCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
98139957 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
66 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
* * **
98140010 TCCGGGCTAAGCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTT
* *
98140073 GTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
65 GTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
98140114 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
116 2 0.02
117 63 0.68
118 27 0.29
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (118 bp):
TCCGGGCTAAGCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:98146572 original size:22 final size:22
Alignment explanation
Indices: 98146546--98146617 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
98146536 GTTCACATTC
98146546 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
98146568 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
98146592 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
98146615 ATC
1 ATC
98146618 TCATATATGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:98146592 original size:47 final size:47
Alignment explanation
Indices: 98146528--98146693 Score: 278
Period size: 47 Copynumber: 3.5 Consensus size: 47
98146518 TAGTCACCAC
*
98146528 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
98146575 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
* *
98146622 ATATGCATGTTCACATTCATCACATTTGCCATTTGGCCTTATCTCAT
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
* **
98146669 ATATACACATTCACATTCATCACAT
1 ATATGCATGTTCACATTCATCACAT
98146694 AAAATCCTAA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.36
Consensus pattern (47 bp):
ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
Found at i:98150565 original size:29 final size:28
Alignment explanation
Indices: 98150532--98150629 Score: 83
Period size: 29 Copynumber: 3.5 Consensus size: 28
98150522 ATTAAAGAAT
98150532 TCGCACACATAGTACCTCAATTACCAATC
1 TCGCACACATAGT-CCTCAATTACCAATC
* * **
98150561 TCGCACACA-AGTGCTCGATTGAAGAA-C
1 TCGCACACATAGTCCTCAATT-ACCAATC
* **
98150588 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGT-CCTCAATTACCAATC
*
98150617 TGGCACACATAGT
1 TCGCACACATAGT
98150630 GCTTGGTTGG
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
27 16 0.30
28 11 0.20
29 27 0.50
ACGTcount: A:0.32, C:0.31, G:0.15, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTCCTCAATTACCAATC
Found at i:98150577 original size:56 final size:57
Alignment explanation
Indices: 98150504--98150632 Score: 172
Period size: 56 Copynumber: 2.3 Consensus size: 57
98150494 CTGACTGATT
* *
98150504 TCGCACACATA-TCGCTCGATTAAAGAATTCGCACACATAGTACCTCAATTACCAATC
1 TCGCACACATAGT-GCTCGATTAAAGAACTCGCACACATAGTACCTCAACTACCAATC
* * **
98150561 TCGCACACA-AGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTACCTCAACTACCAATC
*
98150617 TGGCACACATAGTGCT
1 TCGCACACATAGTGCT
98150633 TGGTTGGAGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
56 47 0.75
57 16 0.25
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTACCTCAACTACCAATC
Found at i:98152055 original size:27 final size:29
Alignment explanation
Indices: 98152025--98152137 Score: 99
Period size: 30 Copynumber: 4.0 Consensus size: 29
98152015 ATACAAGAGC
*
98152025 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
98152052 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
98152081 ATATAATTTTCAGCTCGCACACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* * *
98152111 A-ATA-ATCAAACTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
98152138 TGTCACCGTG
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 24 0.32
28 4 0.05
29 21 0.28
30 26 0.35
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:98152092 original size:30 final size:30
Alignment explanation
Indices: 98152037--98152137 Score: 149
Period size: 30 Copynumber: 3.5 Consensus size: 30
98152027 ATAGTGAATC
98152037 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
98152066 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
98152096 CGCACACTTAGTGCTA-ATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
98152123 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
98152138 TGTCACCGTG
Statistics
Matches: 69, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
26 2 0.03
27 18 0.26
29 23 0.33
30 26 0.38
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:98159974 original size:27 final size:29
Alignment explanation
Indices: 98159944--98160056 Score: 99
Period size: 30 Copynumber: 4.0 Consensus size: 29
98159934 ATACAAGAGC
*
98159944 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
98159971 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
98160000 ATATAATTTTCAGCTCGCACACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* * *
98160030 A-ATA-ATCAAACTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
98160057 GTACAATTTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 24 0.32
28 4 0.05
29 21 0.28
30 26 0.35
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:98160011 original size:30 final size:30
Alignment explanation
Indices: 98159956--98160085 Score: 162
Period size: 30 Copynumber: 4.5 Consensus size: 30
98159946 ATAGTGAATC
*
98159956 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
98159985 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
98160015 CGCACACTTAGTGCTA-ATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
98160042 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
98160072 CGCACACTTAGTGC
1 CGCACACTTAGTGC
98160086 CGAGACCAAT
Statistics
Matches: 90, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
26 2 0.02
27 18 0.20
28 3 0.03
29 23 0.26
30 43 0.48
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:98160055 original size:57 final size:58
Alignment explanation
Indices: 98159955--98160085 Score: 167
Period size: 57 Copynumber: 2.3 Consensus size: 58
98159945 TATAGTGAAT
* * * * *
98159955 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
98160014 TCGCACACTTAGTGCTA-ATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
98160071 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
98160086 CGAGACCAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
56 2 0.03
57 42 0.67
58 3 0.05
59 16 0.25
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:98161755 original size:40 final size:40
Alignment explanation
Indices: 98161711--98161962 Score: 441
Period size: 40 Copynumber: 6.3 Consensus size: 40
98161701 CCTTCGAGGT
*
98161711 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
* *
98161751 TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
98161791 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
98161831 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
98161871 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
98161911 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
98161951 TTAGCCTGGATA
1 TTAGCCCGGATA
98161963 CATATAACTC
Statistics
Matches: 201, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 201 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
Found at i:98163340 original size:47 final size:47
Alignment explanation
Indices: 98163276--98163441 Score: 278
Period size: 47 Copynumber: 3.5 Consensus size: 47
98163266 TAGTCACCAC
*
98163276 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
*
98163323 ATATGCATGTTCACATTCATTACATTGGCCATTCGGCCTTATCTCAT
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
98163370 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
* ** *
98163417 ATATACACATTCATATTCATCACAT
1 ATATGCATGTTCACATTCATCACAT
98163442 AAAATCCTAA
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 112 1.00
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.36
Consensus pattern (47 bp):
ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
Found at i:98176952 original size:40 final size:40
Alignment explanation
Indices: 98176908--98177077 Score: 270
Period size: 40 Copynumber: 4.2 Consensus size: 40
98176898 GTAACAACCA
*
98176908 GCACGAATGCCTTCGGGACTTAACCCGGTAATAATAACTC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACTC
*
98176948 GCACGAATGCCTTCGGGACTTAGCCCGGTTATAATAACTC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACTC
* *
98176988 GCACGAATGCCTTCGGGACTTAGCCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACTC
* *
98177028 GCATGAATGCCTTCGGGACTTAACCTGGTTATAATAAC-C
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACTC
98177067 TGCACGAATGC
1 -GCACGAATGC
98177078 TGTGCACATA
Statistics
Matches: 122, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 121 0.99
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACTC
Found at i:98182403 original size:27 final size:28
Alignment explanation
Indices: 98182346--98182415 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
98182336 AAACTTGTAC
*
98182346 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
98182374 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
98182401 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
98182416 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:98182426 original size:27 final size:27
Alignment explanation
Indices: 98182346--98182427 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
98182336 AAACTTGTAC
* * *
98182346 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
98182374 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
98182401 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
98182428 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:98190104 original size:27 final size:27
Alignment explanation
Indices: 98190082--98190469 Score: 289
Period size: 27 Copynumber: 14.4 Consensus size: 27
98190072 AGAATTACTG
* ** *
98190082 AAATACCCTTGGTTTACAAAATTA-CT
1 AAATACCCTTGATTTGTAAAATTACCA
* **
98190108 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTTGATTTGTAAAATTACCA
* * *
98190135 AAATACCCTCGATTAGCAAAATTACCA
1 AAATACCCTTGATTTGTAAAATTACCA
* *
98190162 AAATACCCCTGGTTTGTAAAATTACCA
1 AAATACCCTTGATTTGTAAAATTACCA
* *
98190189 AAATACCCCTGATTTGTGAAATTACCA
1 AAATACCCTTGATTTGTAAAATTACCA
* ** * *
98190216 AAATACCCTCGACCTATAAAATTACCG
1 AAATACCCTTGATTTGTAAAATTACCA
* * **
98190243 AAATACCCTCGACTTGTAAAATTACTG
1 AAATACCCTTGATTTGTAAAATTACCA
* **
98190270 AATTACCCTCAATTTGTAAAATTACCA
1 AAATACCCTTGATTTGTAAAATTACCA
* ***
98190297 AAATACTCC-TGATTTGGAAAATTATTG
1 AAATAC-CCTTGATTTGTAAAATTACCA
* **
98190324 AAATACCCTTGATTTGGAAAATTATAA
1 AAATACCCTTGATTTGTAAAATTACCA
**
98190351 AAATACCCTTGATTTACAAAATTA-CA
1 AAATACCCTTGATTTGTAAAATTACCA
* ** *
98190377 GAAATA-CCTTTACTTTCAAAAATTACAA
1 -AAATACCCTTGA-TTTGTAAAATTACCA
* * * * *
98190405 AAATACCATTGGTTTTTAAAATTATCG
1 AAATACCCTTGATTTGTAAAATTACCA
* * *
98190432 AAATACCCTTGGTTTGTAGATTTACCA
1 AAATACCCTTGATTTGTAAAATTACCA
*
98190459 AAACACCCTTG
1 AAATACCCTTG
98190470 TAGGGTGAAA
Statistics
Matches: 297, Mismatches: 58, Indels: 13
0.81 0.16 0.04
Matches are distributed among these distances:
26 32 0.11
27 259 0.87
28 6 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATACCCTTGATTTGTAAAATTACCA
Found at i:98190754 original size:41 final size:41
Alignment explanation
Indices: 98190707--98190829 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
98190697 GGACGAAGAA
*
98190707 ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCTACCG
1 ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
* *
98190748 ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
1 ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
* *
98190789 ATTAAGGATCACTTGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
98190830 GTGGCTTTTA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (41 bp):
ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:98191639 original size:27 final size:26
Alignment explanation
Indices: 98191591--98191650 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
98191581 AGCGAGCTGC
*
98191591 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
98191618 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
98191644 CAGATAT
1 CAGATAT
98191651 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:98191654 original size:2 final size:2
Alignment explanation
Indices: 98191647--98191678 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
98191637 ACCAGAACAG
98191647 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98191679 GTGTATGTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98191765 original size:27 final size:26
Alignment explanation
Indices: 98191718--98191768 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
98191708 CGGAGCTGCC
*
98191718 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
98191744 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
98191769 TTGCAACGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:98192455 original size:27 final size:27
Alignment explanation
Indices: 98192409--98192579 Score: 200
Period size: 27 Copynumber: 6.3 Consensus size: 27
98192399 TTAACAATGG
* * * *
98192409 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
98192436 TAATTCTACCCTATAGGGGTATTTC-A
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
98192462 GTAATTCTATCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTCGA
*
98192490 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
** *
98192517 TAATTCTACCCTACAAAGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
98192544 TAATTCTACCTTACAGTGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
98192571 TAATTCTAC
1 TAATTCTAC
98192580 AACTTATCCA
Statistics
Matches: 124, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 123 0.99
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:98192494 original size:54 final size:54
Alignment explanation
Indices: 98192408--98192579 Score: 236
Period size: 54 Copynumber: 3.2 Consensus size: 54
98192398 TTTAACAATG
* * * * *
98192408 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* *
98192462 GTAATTCTATCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * * * *
98192516 ATAATTCTACCCTACAAAGGTATTTCGGTAATTCTACCTTACAGTGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
98192570 GTAATTCTAC
1 GTAATTCTAC
98192580 AACTTATCCA
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 103 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:98192547 original size:81 final size:81
Alignment explanation
Indices: 98192407--98192579 Score: 240
Period size: 81 Copynumber: 2.1 Consensus size: 81
98192397 ATTTAACAAT
* * * **
98192407 GGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTTCAGTAATTCTAT
1 GGTAATTCTACCCCACAAGGGTATCTCAATAATTCTACCCTACAAAGGTATTTCAGTAATTCTA-
98192472 CC-TACAGGGGTATTTC
65 CCTTACAGGGGTATTTC
* * * *
98192488 GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAAGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCCACAAGGGTATCTCAATAATTCTACCCTACAAAGGTATTTCAGTAATTCTAC
*
98192553 CTTACAGTGGTATTTC
66 CTTACAGGGGTATTTC
98192569 GGTAATTCTAC
1 GGTAATTCTAC
98192580 AACTTATCCA
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 2 0.02
81 79 0.98
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (81 bp):
GGTAATTCTACCCCACAAGGGTATCTCAATAATTCTACCCTACAAAGGTATTTCAGTAATTCTAC
CTTACAGGGGTATTTC
Found at i:98195890 original size:37 final size:37
Alignment explanation
Indices: 98195831--98195939 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
98195821 AGCTCAGATG
* * *
98195831 AAATCTCCACACGAAGTTATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
98195868 AAATCTCCACACGTGGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
98195905 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
98195940 ATATTTTCCA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:98196137 original size:48 final size:48
Alignment explanation
Indices: 98196085--98196507 Score: 680
Period size: 48 Copynumber: 8.9 Consensus size: 48
98196075 ACACATCTCT
* * * * *
98196085 TACATATTTCACACTAGCCCTTCGGCTTTACCACGTATACGTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
* *
98196133 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC-C-CA
* *
98196183 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
98196231 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
98196279 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
*
98196327 TACATATTTCACATTAGCCATTTGGCTTTACCAC--AT--ATA---CA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
98196368 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
98196416 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
*
98196464 TACATATTTCACATTAGCCATTCGGCCTTACCACATATACATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
98196508 ATTTATCTTG
Statistics
Matches: 352, Mismatches: 14, Indels: 18
0.92 0.04 0.05
Matches are distributed among these distances:
41 35 0.10
43 2 0.01
44 3 0.01
45 3 0.01
46 2 0.01
48 263 0.75
50 44 0.12
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
Found at i:98196439 original size:137 final size:137
Alignment explanation
Indices: 98196085--98196506 Score: 673
Period size: 137 Copynumber: 3.0 Consensus size: 137
98196075 ACACATCTCT
* * * * * *
98196085 TACATATTTCACACTAGCCCTTCGGCTTTACCACGTATACGTATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATATTTCACATTAG
* *
98196150 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACATATC-C-CATACATATTTCACATTAGCCATTCGGCTTTACC
98196215 ACATATACATATCTCA
129 AC--AT--ATA---CA
98196231 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATATTTCACATTAG
*
98196296 CCATTCGGCTTTACCACATATACATATCCCATACATATTTCACATTAGCCATTTGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCCCATACATATTTCACATTAGCCATTCGGCTTTACCAC
98196361 ATATACA
131 ATATACA
98196368 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATATTTCACATTAG
*
98196433 CCATTCGGCTTTACCACATATACATATCCCATACATATTTCACATTAGCCATTCGGCCTTACCAC
66 CCATTCGGCTTTACCACATATACATATCCCATACATATTTCACATTAGCCATTCGGCTTTACCAC
98196498 ATATACA
131 ATATACA
98196505 TA
1 TA
98196507 TATTTATCTT
Statistics
Matches: 265, Mismatches: 11, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
137 139 0.52
140 3 0.01
142 2 0.01
144 33 0.12
145 1 0.00
146 87 0.33
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (137 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCCCATACATATTTCACATTAGCCATTCGGCTTTACCAC
ATATACA
Found at i:98197369 original size:87 final size:87
Alignment explanation
Indices: 98197223--98197381 Score: 318
Period size: 87 Copynumber: 1.8 Consensus size: 87
98197213 ACATATCATG
98197223 TGTAACACCCCGAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAGCAAGCCAAGTTCAC
1 TGTAACACCCCGAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAGCAAGCCAAGTTCAC
98197288 TTGTTTTTGATACCAATAAAAT
66 TTGTTTTTGATACCAATAAAAT
98197310 TGTAACACCCCGAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAGCAAGCCAAGTTCAC
1 TGTAACACCCCGAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAGCAAGCCAAGTTCAC
98197375 TTGTTTT
66 TTGTTTT
98197382 GCCCATCCAT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (87 bp):
TGTAACACCCCGAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAGCAAGCCAAGTTCAC
TTGTTTTTGATACCAATAAAAT
Found at i:98198829 original size:80 final size:80
Alignment explanation
Indices: 98198745--98198893 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
98198735 TATGGTAACC
* * * *
98198745 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
98198809 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
98198825 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
98198890 CCGG
66 CCGG
98198894 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:98198835 original size:40 final size:38
Alignment explanation
Indices: 98198786--98198893 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
98198776 ATCACGATTT
*
98198786 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
98198826 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
98198866 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
98198894 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:98202489 original size:28 final size:28
Alignment explanation
Indices: 98202453--98202519 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
98202443 TTAGGGCTGT
*
98202453 CACATTAAGTGTCATTCTCAATATCTCG
1 CACACTAAGTGTCATTCTCAATATCTCG
*
98202481 CACACTAAGTGTCATTCTCAATATTTCG
1 CACACTAAGTGTCATTCTCAATATCTCG
* *
98202509 TACACTGAGTG
1 CACACTAAGTG
98202520 CCATATTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.34
Consensus pattern (28 bp):
CACACTAAGTGTCATTCTCAATATCTCG
Found at i:98204316 original size:31 final size:31
Alignment explanation
Indices: 98204280--98204344 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 31
98204270 AATTCACATA
*
98204280 TTTAAACATGG-AAAATAATATTAAATTATAT
1 TTTAAAAATGGAAAAATAATATTAAATTAT-T
98204311 TTTAAAAATGGAAAAATAATATTAAATTATT
1 TTTAAAAATGGAAAAATAATATTAAATTATT
98204342 TTT
1 TTT
98204345 CTGACACAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 14 0.44
32 18 0.56
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.42
Consensus pattern (31 bp):
TTTAAAAATGGAAAAATAATATTAAATTATT
Found at i:98208795 original size:27 final size:27
Alignment explanation
Indices: 98208773--98209160 Score: 172
Period size: 27 Copynumber: 14.4 Consensus size: 27
98208763 AGAATTACTG
*
98208773 AAATACCCTTAGTTTACAAAATTA-CT
1 AAATACCCTTAGTTTACAAAATTACCA
* * *
98208799 GAATACCCTTGGTTTACAAAATTTCCA
1 AAATACCCTTAGTTTACAAAATTACCA
* *
98208826 AAATACCC-TCG-ATATCAAAATTACCA
1 AAATACCCTTAGTTTA-CAAAATTACCA
* **
98208852 AAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCTTAGTTTACAAAATTACCA
* *** * *
98208879 AAATACCCTGA-TTTGTGAAATCACCG
1 AAATACCCTTAGTTTACAAAATTACCA
* * ** ***
98208905 AAATACCCTCGACTTTGTAAAATTATTG
1 AAATACCCT-TAGTTTACAAAATTACCA
* * *
98208933 AAATACCC-TCGACTTATAAAATTACCCA
1 AAATACCCTTAG-TTTACAAAATTA-CCA
* ** *
98208961 AAATACCC-TCGATTTGTAAAATTACAA
1 AAATACCCTTAG-TTTACAAAATTACCA
* **
98208988 AAATACCGCTGA-TTTGGAAAATTACCA
1 AAATACC-CTTAGTTTACAAAATTACCA
* *
98209015 AAATACCATTAATTTGGA-AAAATTA-CA
1 AAATACCCTTAGTTT--ACAAAATTACCA
* *
98209042 GAATACCCCT-GATTTACAAAATTA-CA
1 AAATACCCTTAG-TTTACAAAATTACCA
*
98209068 GAAATACCCTTGACTTT-CAAAAATTA-CA
1 -AAATACCCTT-AGTTTAC-AAAATTACCA
* * *
98209096 GAAATACCATTGGTTTGCAAAATTACCA
1 -AAATACCCTTAGTTTACAAAATTACCA
* * *
98209124 AAATACCCTTAGTTTATAGATTTACCA
1 AAATACCCTTAGTTTACAAAATTACCA
*
98209151 AAACACCCTT
1 AAATACCCTT
98209161 GTAGGGTGAA
Statistics
Matches: 285, Mismatches: 56, Indels: 41
0.75 0.15 0.11
Matches are distributed among these distances:
25 3 0.01
26 73 0.26
27 134 0.47
28 75 0.26
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATACCCTTAGTTTACAAAATTACCA
Found at i:98208927 original size:28 final size:27
Alignment explanation
Indices: 98208816--98209132 Score: 245
Period size: 27 Copynumber: 11.7 Consensus size: 27
98208806 CTTGGTTTAC
* * *
98208816 AAAATTTCCAAAATACCCTCGATAT-C
1 AAAATTACCAAAATACCCTCGATTTGT
*
98208842 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
98208869 AAAATTACCAAAATACCCT-GATTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * *
98208895 GAAATCACCGAAATACCCTCGACTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
*** * *
98208923 AAAATTATTGAAATACCCTCGACTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
98208950 AAAATTACCCAAAATACCCTCGATTTGT
1 AAAATTA-CCAAAATACCCTCGATTTGT
* *
98208978 AAAATTACAAAAATACCGCT-GATTTGG
1 AAAATTACCAAAATACC-CTCGATTTGT
* ** *
98209005 AAAATTACCAAAATACCATTAATTTGGA
1 AAAATTACCAAAATACCCTCGATTT-GT
* **
98209033 AAAATTA-CAGAATACCC-CTGATTTAC
1 AAAATTACCAAAATACCCTC-GATTTGT
* **
98209059 AAAATTA-CAGAAATACCCTTGACTTTCA
1 AAAATTACCA-AAATACCCTCGA-TTTGT
* * * *
98209087 AAAATTA-CAGAAATACCATTGGTTTGC
1 AAAATTACCA-AAATACCCTCGATTTGT
98209114 AAAATTACCAAAATACCCT
1 AAAATTACCAAAATACCCT
98209133 TAGTTTATAG
Statistics
Matches: 237, Mismatches: 40, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
25 2 0.01
26 50 0.21
27 105 0.44
28 80 0.34
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTGT
Found at i:98209047 original size:54 final size:53
Alignment explanation
Indices: 98208841--98209134 Score: 216
Period size: 55 Copynumber: 5.4 Consensus size: 53
98208831 CCCTCGATAT
* * * *
98208841 CAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACC-CTGATTTG
1 CAAAATTACCAAAATACCCTTAATTTGAAAAATTA-CAGAATACCACTGATTTG
** * * * * * ** * *
98208894 TGAAATCACCGAAATACCCTCGACTTTGTAAAATTATTGAAATACC-CTCGACTTA
1 CAAAATTACCAAAATACCCT-TAATTTGAAAAATTACAG-AATACCACT-GATTTG
* ** * * *
98208949 TAAAATTACCCAAAATACCCTCGATTTGTAAAATTACAAAAATACCGCTGATTTG
1 CAAAATTA-CCAAAATACCCTTAATTTGAAAAATTAC-AGAATACCACTGATTTG
* * * *
98209004 GAAAATTACCAAAATACCATTAATTTGGAAAAATTACAGAATACCCCTGATTTA
1 CAAAATTACCAAAATACCCTTAATTT-GAAAAATTACAGAATACCACTGATTTG
* * * *
98209058 CAAAATTA-CAGAAATACCCTTGACTTTCAAAAATTACAGAAATACCATTGGTTTG
1 CAAAATTACCA-AAATACCCTT-AATTTGAAAAATTACAG-AATACCACTGATTTG
98209113 CAAAATTACCAAAATACCCTTA
1 CAAAATTACCAAAATACCCTTA
98209135 GTTTATAGAT
Statistics
Matches: 191, Mismatches: 39, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
53 17 0.09
54 78 0.41
55 81 0.42
56 15 0.08
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (53 bp):
CAAAATTACCAAAATACCCTTAATTTGAAAAATTACAGAATACCACTGATTTG
Found at i:98209047 original size:109 final size:108
Alignment explanation
Indices: 98208826--98209130 Score: 293
Period size: 109 Copynumber: 2.8 Consensus size: 108
98208816 AAAATTTCCA
* * *
98208826 AAATACCCTCGA-TATCAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCTG
1 AAATACCCTCGATTAT-AAAATTACCAAAATACCCTCGACTTTGTAAAATTACAAAAATACCCTG
* * * * * **
98208889 ATTTGTG-AAATCACCGAAATACCCTCGACTTTGTAAAATTATTG
65 ATTTG-GAAAATTACCAAAATACCATCGAATTTGAAAAATTACAG
98208933 AAATACCCTCGACTTATAAAATTACCCAAAATACCCTCGA-TTTGTAAAATTACAAAAATACCGC
1 AAATACCCTCGA-TTATAAAATTA-CCAAAATACCCTCGACTTTGTAAAATTACAAAAATACC-C
*
98208997 TGATTTGGAAAATTACCAAAATACCAT-TAATTTGGAAAAATTACAG
63 TGATTTGGAAAATTACCAAAATACCATCGAATTT-GAAAAATTACAG
* * ** *
98209043 -AATACCC-CTGATTTACAAAATTA-CAGAAATACCCTTGACTTTCAAAAATTACAGAAATACCA
1 AAATACCCTC-GA-TTATAAAATTACCA-AAATACCCTCGACTTTGTAAAATTACAAAAATACC-
* * *
98209105 TTGGTTTGCAAAATTACCAAAATACC
62 CTGATTTGGAAAATTACCAAAATACC
98209131 CTTAGTTTAT
Statistics
Matches: 168, Mismatches: 20, Indels: 18
0.82 0.10 0.09
Matches are distributed among these distances:
107 14 0.08
108 19 0.11
109 101 0.60
110 34 0.20
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (108 bp):
AAATACCCTCGATTATAAAATTACCAAAATACCCTCGACTTTGTAAAATTACAAAAATACCCTGA
TTTGGAAAATTACCAAAATACCATCGAATTTGAAAAATTACAG
Found at i:98209128 original size:55 final size:54
Alignment explanation
Indices: 98208765--98209133 Score: 249
Period size: 54 Copynumber: 6.8 Consensus size: 54
98208755 TGTAGGCTAG
* * * ** *
98208765 AATTACTGAAATACC-CTTAGTTTACAAAATTA-CTGAATACCCTTGGTTT-ACAA
1 AATTACAGAAATACCACTGA-TTTGCAAAATTACCAAAATACCCTTGATTTGA-AA
* * * *
98208818 AATTTCCA-AAATACC-CTCGATAT-CAAAATTACCAAAATACCCCT-AGTTTGTAA
1 AA-TTACAGAAATACCACT-GATTTGCAAAATTACCAAAATACCCTTGA-TTTGAAA
** * * * *
98208871 AATTACCA-AAATACC-CTGATTTGTGAAATCACCGAAATACCCTCGACTTTGTAA
1 AATTA-CAGAAATACCACTGATTTGCAAAATTACCAAAATACCCTTGA-TTTGAAA
** * ** * *
98208925 AATTATTGAAATACC-CTCGACTTATAAAATTACCCAAAATACCCTCGATTTGTAA
1 AATTACAGAAATACCACT-GATTTGCAAAATTA-CCAAAATACCCTTGATTTGAAA
* * * * *
98208980 AATTACAAAAATACCGCTGATTTGGAAAATTACCAAAATACCATTAATTTGGAAA
1 AATTACAGAAATACCACTGATTTGCAAAATTACCAAAATACCCTTGATTT-GAAA
* * *
98209035 AATTACAG-AATACCCCTGATTTACAAAATTA-CAGAAATACCCTTGACTTTCAAA
1 AATTACAGAAATACCACTGATTTGCAAAATTACCA-AAATACCCTTGA-TTTGAAA
* *
98209089 AATTACAGAAATACCATTGGTTTGCAAAATTACCAAAATACCCTT
1 AATTACAGAAATACCACTGATTTGCAAAATTACCAAAATACCCTT
98209134 AGTTTATAGA
Statistics
Matches: 253, Mismatches: 46, Indels: 32
0.76 0.14 0.10
Matches are distributed among these distances:
52 14 0.06
53 57 0.23
54 82 0.32
55 82 0.32
56 18 0.07
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (54 bp):
AATTACAGAAATACCACTGATTTGCAAAATTACCAAAATACCCTTGATTTGAAA
Found at i:98209444 original size:41 final size:41
Alignment explanation
Indices: 98209399--98209504 Score: 140
Period size: 41 Copynumber: 2.6 Consensus size: 41
98209389 GGAGGAAGAA
* * *
98209399 ATTGAGGATCTCATGGTTGCTTGACAACCATGGGTCCACCG
1 ATTGAGGATCACATGGTTGCTTGACAACCATAGATCCACCG
* * *
98209440 ATTGAGGATCACATGGTTGCTTGACGACCGTAGATCCATCG
1 ATTGAGGATCACATGGTTGCTTGACAACCATAGATCCACCG
* *
98209481 ATTAAGGATCGCATGGTTGCTTGA
1 ATTGAGGATCACATGGTTGCTTGA
98209505 TGACCGTGAA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCACATGGTTGCTTGACAACCATAGATCCACCG
Done.