Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 321 of 770
Found at i:98216907 original size:46 final size:46
Alignment explanation
Indices: 98216857--98217029 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
98216847 TGGTTGACCA
98216857 TCCGAACTCGTTGAGTTGAG-TCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTTC-GAGTTCACTTATGGATGCGAATG
* * *
98216903 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAA-T--G
98216948 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
* * * **
98216996 CCCGAGCTTGTTGAGTTGAGCCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTA
98217030 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 55 0.52
47 31 0.29
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
Found at i:98217014 original size:93 final size:93
Alignment explanation
Indices: 98216855--98217024 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
98216845 GATGGTTGAC
*
98216855 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTT
**
98216920 GAGTTCGAGTTCGTGAGATGTAACTAGG
66 GAGCCCGAGTTCGTGAGATGTAACTAGG
* *
98216948 CATCCGAACTCGTTGAGTTGAGT-TCGAGTTCACTTATGGATGCGAATGCCCGAGCTTGTTGAGT
1 CATCCGAACTCGTTGAGTTGAGTCT-GAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
98217012 TGAGCCCGAGTTC
65 TGAGCCCGAGTTC
98217025 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTT
GAGCCCGAGTTCGTGAGATGTAACTAGG
Found at i:98228143 original size:93 final size:93
Alignment explanation
Indices: 98228031--98228201 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
98228021 GCCCATAAGT
* *
98228031 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCCCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCATCCATAAGTGAACTCGGACTCAACTCAA
98228096 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
98228124 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCATCCATAAGTGAACTCGGACTCAACTCAA
98228189 CGAGTTCGGATGC
66 CGAGTTCGGATGC
98228202 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:98228198 original size:46 final size:46
Alignment explanation
Indices: 98228023--98228203 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
98228013 TGTAACCCGC
* * * *
98228023 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCCCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
98228069 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
98228119 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
98228162 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
98228204 AACCATCCTA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.63
47 31 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:98229552 original size:39 final size:39
Alignment explanation
Indices: 98229498--98229641 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
98229488 TACAGTTCGA
98229498 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
98229537 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
98229576 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
98229615 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
98229642 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:98244814 original size:64 final size:69
Alignment explanation
Indices: 98244746--98244929 Score: 229
Period size: 70 Copynumber: 2.7 Consensus size: 69
98244736 TAGTACCACT
*
98244746 CATGCGACCCAAGCCA-ATTTGTC-T-CGTAGCTCTC-TGT-TACATGGTGTCCGTCACTTGGAA
1 CATGCGACCC-AGCCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAA
98244806 TC-CG
65 TCACG
* *
98244810 CATGCGACCCAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCCAGCCACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGA
98244875 ATCACG
64 ATCACG
* *
98244881 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTC-CTTGTCTACATGG
1 CATGCGACCCAGCCACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
98244930 GATACATCTC
Statistics
Matches: 108, Mismatches: 4, Indels: 10
0.89 0.03 0.08
Matches are distributed among these distances:
63 4 0.04
64 16 0.15
66 1 0.01
68 10 0.09
69 3 0.03
70 37 0.34
71 37 0.34
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (69 bp):
CATGCGACCCAGCCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAAT
CACG
Found at i:98244863 original size:70 final size:71
Alignment explanation
Indices: 98244770--98244929 Score: 274
Period size: 70 Copynumber: 2.3 Consensus size: 71
98244760 CAATTTGTCT
98244770 CGTAGCTCTC-TGT-TACATGGTGTCCGTCACTTGGAATC-CGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
98244832 CTTTCA
66 CTTTCA
* *
98244838 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
98244903 CTTTCA
66 CTTTCA
98244909 CGTAGCTC-CTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
98244930 GATACATCTC
Statistics
Matches: 87, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
68 10 0.11
69 3 0.03
70 37 0.43
71 37 0.43
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:98248823 original size:71 final size:71
Alignment explanation
Indices: 98248737--98248900 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
98248727 CGATTTGTCT
98248737 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98248802 CTTTCA
66 CTTTCA
98248808 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98248873 CTTTCA
66 CTTTCA
98248879 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
98248901 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:98248938 original size:71 final size:70
Alignment explanation
Indices: 98248737--98248934 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
98248727 CGATTTGTCT
* * * *
98248737 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
98248802 CTTTCA
65 CTTTCA
* * * *
98248808 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
98248873 CTTTCA
65 CTTTCA
* *
98248879 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
98248935 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:98256399 original size:71 final size:71
Alignment explanation
Indices: 98256315--98256478 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
98256305 CGATTTGTCT
98256315 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98256380 CTTTCA
66 CTTTCA
98256386 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98256451 CTTTCA
66 CTTTCA
98256457 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
98256479 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:98256516 original size:71 final size:70
Alignment explanation
Indices: 98256315--98256512 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
98256305 CGATTTGTCT
* * * *
98256315 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
98256380 CTTTCA
65 CTTTCA
* * * *
98256386 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
98256451 CTTTCA
65 CTTTCA
* *
98256457 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
98256513 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:98264716 original size:28 final size:28
Alignment explanation
Indices: 98264655--98264716 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
98264645 GCTCAAACAG
* * *
98264655 GGGAATATGACAGTGTGTGAGTATGAAT
1 GGGAATATGACAGTGTCTGACTATGAAC
** *
98264683 AAGAATATGATAGTGTCTGACTATGAAC
1 GGGAATATGACAGTGTCTGACTATGAAC
98264711 GGGAAT
1 GGGAAT
98264717 TTGTTAGATT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.35, C:0.06, G:0.31, T:0.27
Consensus pattern (28 bp):
GGGAATATGACAGTGTCTGACTATGAAC
Found at i:98267606 original size:2 final size:2
Alignment explanation
Indices: 98267599--98267629 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
98267589 TCATGACATG
98267599 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
98267630 GACTAGTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:98281469 original size:28 final size:28
Alignment explanation
Indices: 98281400--98281500 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
98281390 GACAAGATTG
* * * *
98281400 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
98281430 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
98281458 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
98281487 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98281501 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:98289387 original size:28 final size:28
Alignment explanation
Indices: 98289318--98289418 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
98289308 GACAAGATTG
* * * *
98289318 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
98289348 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
98289376 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
98289405 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98289419 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:98305279 original size:40 final size:39
Alignment explanation
Indices: 98305235--98305427 Score: 242
Period size: 39 Copynumber: 4.9 Consensus size: 39
98305225 GTTCAAAACA
* * ** * *
98305235 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
98305275 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
98305315 CCTTCGGGCTTAGCCCAGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
98305354 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
98305393 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
98305428 TTCATTCACA
Statistics
Matches: 137, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:98305347 original size:39 final size:39
Alignment explanation
Indices: 98305265--98305427 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
98305255 TATGGTAACC
* *
98305265 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
98305305 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
98305344 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
98305383 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
98305422 CGCACA
1 CGCACA
98305428 TTCATTCACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:98307393 original size:12 final size:12
Alignment explanation
Indices: 98307376--98307401 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
98307366 TTCTCTTTGC
98307376 TTAGTTAATTAG
1 TTAGTTAATTAG
98307388 TTAGTTAATTAG
1 TTAGTTAATTAG
98307400 TT
1 TT
98307402 TAATAAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (12 bp):
TTAGTTAATTAG
Found at i:98311169 original size:126 final size:126
Alignment explanation
Indices: 98310944--98311195 Score: 486
Period size: 126 Copynumber: 2.0 Consensus size: 126
98310934 TAGTTTAATC
98310944 TCTTTATTTAGGGGATTAATCTGAAAAGATATCAATGTATGAAATTTGGGTCATGGATGAATATG
1 TCTTTATTTAGGGGATTAATCTGAAAAGATATCAATGTATGAAATTTGGGTCATGGATGAATATG
**
98311009 CTGAAAATTAGAAATTTATGGTATTAAATAAGACCGGTAGGTTTGTTTTTCGTTATACGAA
66 CTGAAAATTAGAAATTTATGGTAGAAAATAAGACCGGTAGGTTTGTTTTTCGTTATACGAA
98311070 TCTTTATTTAGGGGATTAATCTGAAAAGATATCAATGTATGAAATTTGGGTCATGGATGAATATG
1 TCTTTATTTAGGGGATTAATCTGAAAAGATATCAATGTATGAAATTTGGGTCATGGATGAATATG
98311135 CTGAAAATTAGAAATTTATGGTAGAAAATAAGACCGGTAGGTTTGTTTTTCGTTATACGAA
66 CTGAAAATTAGAAATTTATGGTAGAAAATAAGACCGGTAGGTTTGTTTTTCGTTATACGAA
98311196 CTTACTAAGC
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 124 1.00
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.37
Consensus pattern (126 bp):
TCTTTATTTAGGGGATTAATCTGAAAAGATATCAATGTATGAAATTTGGGTCATGGATGAATATG
CTGAAAATTAGAAATTTATGGTAGAAAATAAGACCGGTAGGTTTGTTTTTCGTTATACGAA
Found at i:98312346 original size:10 final size:10
Alignment explanation
Indices: 98312331--98312373 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
98312321 CAATTCACTA
98312331 ACCAAATCAT
1 ACCAAATCAT
*
98312341 ACCAAATCTAA
1 ACCAAATC-AT
98312352 ACCAAAATCAT
1 ACC-AAATCAT
*
98312363 ACCAAAGCAT
1 ACCAAATCAT
98312373 A
1 A
98312374 TGTTTCAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 15 0.54
11 8 0.29
12 5 0.18
ACGTcount: A:0.53, C:0.28, G:0.02, T:0.16
Consensus pattern (10 bp):
ACCAAATCAT
Found at i:98313206 original size:41 final size:44
Alignment explanation
Indices: 98313148--98313254 Score: 116
Period size: 44 Copynumber: 2.5 Consensus size: 44
98313138 GATGCCATTG
98313148 TCCCAGATAG-GGTCTTACAC-AAAATCA-AA-TACAATACCAACA
1 TCCCAGA-AGTGGTCTTACACGAAAATCATAAGT-CAATACCAACA
* * *
98313190 -CCCAGAAGTGGTCTTACACGTAAATCATAAGTCGATGCCAACA
1 TCCCAGAAGTGGTCTTACACGAAAATCATAAGTCAATACCAACA
* *
98313233 TTCCAGACGTGGTCTTACACGA
1 TCCCAGAAGTGGTCTTACACGA
98313255 TAACACATAT
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
40 2 0.04
41 16 0.30
42 6 0.11
43 11 0.20
44 19 0.35
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.21
Consensus pattern (44 bp):
TCCCAGAAGTGGTCTTACACGAAAATCATAAGTCAATACCAACA
Found at i:98313239 original size:85 final size:85
Alignment explanation
Indices: 98313092--98313252 Score: 184
Period size: 85 Copynumber: 1.9 Consensus size: 85
98313082 AAAAAGCTCG
* * * * ***
98313092 TACAATGCCAACGTCCCAGAAGTTGTCTTACATGTAATCAAATATCGATGCCATTGTCCCAGATA
1 TACAATACCAACGACCCAGAAGTGGTCTTACACGTAATCAAATATCGATGCCAACATCCCAGA-A
98313157 G-GGTCTTACACAAAATCAAA
65 GTGGTCTTACACAAAATCAAA
* *
98313177 TACAATACCAAC-ACCCAGAAGTGGTCTTACACGTAAATCATAA-GTCGATGCCAACATTCCAGA
1 TACAATACCAACGACCCAGAAGTGGTCTTACACGT-AATCA-AATATCGATGCCAACATCCCAGA
*
98313240 CGTGGTCTTACAC
64 AGTGGTCTTACAC
98313253 GATAACACAT
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
84 20 0.32
85 41 0.65
86 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (85 bp):
TACAATACCAACGACCCAGAAGTGGTCTTACACGTAATCAAATATCGATGCCAACATCCCAGAAG
TGGTCTTACACAAAATCAAA
Found at i:98316974 original size:30 final size:31
Alignment explanation
Indices: 98316898--98316980 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
98316888 TCAGTCTCGA
98316898 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
98316928 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
98316959 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
98316981 ACTGTAAGCG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 18 0.35
31 34 0.65
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:98317221 original size:25 final size:26
Alignment explanation
Indices: 98317193--98317245 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
98317183 GCCTAGCCTC
98317193 TTTTAAT-AACTGGGGCAAAGCCCTT
1 TTTTAATAAACTGGGGCAAAGCCCTT
*
98317218 TTTTGATAAACTGGGGCAAAGCCCTT
1 TTTTAATAAACTGGGGCAAAGCCCTT
98317244 TT
1 TT
98317246 CGGTAAACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
TTTTAATAAACTGGGGCAAAGCCCTT
Found at i:98317252 original size:25 final size:26
Alignment explanation
Indices: 98317200--98317254 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
98317190 CTCTTTTAAT
*
98317200 AACTGGGGCAAAGCCCTTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTCGATA
*
98317226 AACTGGGGCAAAGCCC-TTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTCGATA
98317251 AACT
1 AACT
98317255 ACGGCATAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 11 0.41
26 16 0.59
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTTCGATA
Found at i:98317260 original size:25 final size:25
Alignment explanation
Indices: 98317206--98317270 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
98317196 TAATAACTGG
* **
98317206 GGCAAAGCCCTTTTTTGATAAACTGG
1 GGCAAAGCCC-TTTTCGATAAACTAC
*
98317232 GGCAAAGCCCTTTTCGGTAAACTAC
1 GGCAAAGCCCTTTTCGATAAACTAC
* *
98317257 GGCATAGCCATTTT
1 GGCAAAGCCCTTTT
98317271 AGTGCACTTC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 23 0.70
26 10 0.30
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (25 bp):
GGCAAAGCCCTTTTCGATAAACTAC
Found at i:98318145 original size:27 final size:27
Alignment explanation
Indices: 98318068--98318147 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
98318058 TCATACGGAA
98318068 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGC-TATTACGGTCATTTTAC
* *
98318093 CATACAGGGGTATTACGGTCACTTTAC
1 CATACAGGGCTATTACGGTCATTTTAC
* *
98318120 CCTACAAGGGCT-TTACGGTCTTTTTAC
1 CATAC-AGGGCTATTACGGTCATTTTAC
98318147 C
1 C
98318148 TATTAGGGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
25 8 0.18
26 5 0.11
27 27 0.60
28 5 0.11
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34
Consensus pattern (27 bp):
CATACAGGGCTATTACGGTCATTTTAC
Found at i:98318230 original size:26 final size:26
Alignment explanation
Indices: 98318201--98318250 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
98318191 GTAAATCTAC
98318201 AAACCAATGGTATTTC-AGTAATTTGT
1 AAACCAATGGTATTTCTA-TAATTTGT
98318227 AAACCAATGGTATTTCTATAATTT
1 AAACCAATGGTATTTCTATAATTT
98318251 TTAGAAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (26 bp):
AAACCAATGGTATTTCTATAATTTGT
Found at i:98318303 original size:27 final size:27
Alignment explanation
Indices: 98318273--98318386 Score: 149
Period size: 27 Copynumber: 4.2 Consensus size: 27
98318263 GGCTATTTCT
** *
98318273 GTAATTTTGTAAATTAGGGGTATTTTG
1 GTAATTTTACAAACTAGGGGTATTTTG
* *
98318300 GTAATTTTACAAA-TTGAGGGTATTTCG
1 GTAATTTTACAAACTAG-GGGTATTTTG
* *
98318327 GTAATTTCACAAACTAGTGGTATTTTG
1 GTAATTTTACAAACTAGGGGTATTTTG
98318354 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACTAGGGGTATTTTG
98318381 GTAATT
1 GTAATT
98318387 CTACCCTATA
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
26 2 0.03
27 71 0.95
28 2 0.03
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (27 bp):
GTAATTTTACAAACTAGGGGTATTTTG
Found at i:98318500 original size:27 final size:27
Alignment explanation
Indices: 98318418--98318509 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
98318408 ATAATTTCAC
* *
98318418 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTTTGTA
* *
98318445 AACCAAGGGTAAAATAGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTTTGTA
* *
98318472 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTTTGTA
*
98318499 AATCGAGGGTA
1 AATCAAGGGTA
98318510 CTTTGGTAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCAAGGGTAAAACAGTAATTTTGTA
Found at i:98326210 original size:45 final size:45
Alignment explanation
Indices: 98326160--98326252 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
98326150 TTTAGGCATA
98326160 CATAACACCGAAACATGTTATTCATTAGCCATTTCAATAGATAAT
1 CATAACACCGAAACATGTTATTCATTAGCCATTTCAATAGATAAT
98326205 CATAACACCGAAACATGTTATTCATTAGCCATTTCAATAGATAAT
1 CATAACACCGAAACATGTTATTCATTAGCCATTTCAATAGATAAT
98326250 CAT
1 CAT
98326253 TATAAAAGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (45 bp):
CATAACACCGAAACATGTTATTCATTAGCCATTTCAATAGATAAT
Found at i:98326638 original size:15 final size:15
Alignment explanation
Indices: 98326618--98326649 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
98326608 AATACAAAAG
98326618 GCACGTGACTTAATA
1 GCACGTGACTTAATA
98326633 GCACGTGACTTAATA
1 GCACGTGACTTAATA
98326648 GC
1 GC
98326650 TTACTTACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (15 bp):
GCACGTGACTTAATA
Found at i:98327026 original size:55 final size:53
Alignment explanation
Indices: 98326914--98327087 Score: 176
Period size: 55 Copynumber: 3.2 Consensus size: 53
98326904 AACTTACCAT
* *
98326914 TGGTCTTACGTGGTATCC-TTGCCTTAT-GAACTCACCAATG-TCATGCTTTGGCA
1 TGGTCTTACATGGTA-CCTTTGCCTTATAGAACTCATCAATGCT-ATGC-TTGGCA
* *
98326967 TGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGCTATGTCTTGACA
1 TGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAATGCTATG-CTTGGCA
* * * *
98327022 TGGTCTTACATGATTTCCTTT-CCTTATAGAACTTATCAATGCCATGCCTTGGCA
1 TGGTCTTACATG-GTACCTTTGCCTTATAGAACTCATCAATGCTATG-CTTGGCA
*
98327076 TGGTCTCACATG
1 TGGTCTTACATG
98327088 ATATCCTTAT
Statistics
Matches: 103, Mismatches: 12, Indels: 11
0.82 0.10 0.09
Matches are distributed among these distances:
52 2 0.02
53 22 0.21
54 33 0.32
55 39 0.38
56 7 0.07
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
TGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAATGCTATGCTTGGCA
Found at i:98327087 original size:54 final size:54
Alignment explanation
Indices: 98326914--98327095 Score: 206
Period size: 54 Copynumber: 3.4 Consensus size: 54
98326904 AACTTACCAT
* * * * * *
98326914 TGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATGTCATGCTTTGGCA
1 TGGTCTTACATGATATCCTTTCCTTATAGAACTCATCAATGCCATGCCTTGGCA
** * * *
98326967 TGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAATGCTATGTCTTGACA
1 TGGTCTTACATGATATCCTTT-CCTTATAG-AACTCATCAATGCCATGCCTTGGCA
* *
98327022 TGGTCTTACATGATTTCCTTTCCTTATAGAACTTATCAATGCCATGCCTTGGCA
1 TGGTCTTACATGATATCCTTTCCTTATAGAACTCATCAATGCCATGCCTTGGCA
*
98327076 TGGTCTCACATGATATCCTT
1 TGGTCTTACATGATATCCTT
98327096 ATCTTACCAA
Statistics
Matches: 107, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 4 0.04
53 19 0.18
54 40 0.37
55 39 0.36
56 5 0.05
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
TGGTCTTACATGATATCCTTTCCTTATAGAACTCATCAATGCCATGCCTTGGCA
Found at i:98327354 original size:44 final size:44
Alignment explanation
Indices: 98327288--98327371 Score: 98
Period size: 44 Copynumber: 1.9 Consensus size: 44
98327278 TCCTTAACGG
* * *
98327288 TCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCCA
1 TCAATTCCTCCATAAATGCCATGGTA-CAACCATGGACTTTTCCA
* * *
98327332 TCAATTCTTCCATAATTTCCATGGTACAACCATGGACTTT
1 TCAATTCCTCCATAAATGCCATGGTACAACCATGGACTTT
98327372 GAGATATCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
43 2 0.06
44 31 0.94
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.37
Consensus pattern (44 bp):
TCAATTCCTCCATAAATGCCATGGTACAACCATGGACTTTTCCA
Found at i:98327950 original size:30 final size:31
Alignment explanation
Indices: 98327911--98327968 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
98327901 CTAACTCAAA
*
98327911 CTTTGGCAAAATTACAATTTTTCCCCTAAAC
1 CTTTGGCAAAATTACAATTTTACCCCTAAAC
*
98327942 CTTT-GCAAAATTATAATTTTACCCCTA
1 CTTTGGCAAAATTACAATTTTACCCCTA
98327969 GGCTCGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (31 bp):
CTTTGGCAAAATTACAATTTTACCCCTAAAC
Found at i:98329825 original size:10 final size:10
Alignment explanation
Indices: 98329810--98329852 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
98329800 CAATTCACTA
98329810 ACCAAATCAT
1 ACCAAATCAT
*
98329820 ACCAAATCTAA
1 ACCAAATC-AT
98329831 ACCAAAATCAT
1 ACC-AAATCAT
*
98329842 ACCAAAGCAT
1 ACCAAATCAT
98329852 A
1 A
98329853 TGTTTCAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 15 0.54
11 8 0.29
12 5 0.18
ACGTcount: A:0.53, C:0.28, G:0.02, T:0.16
Consensus pattern (10 bp):
ACCAAATCAT
Found at i:98330657 original size:43 final size:42
Alignment explanation
Indices: 98330579--98330738 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 42
98330569 CGCTCGTACA
* ** *** *
98330579 ATGCCAACATCCCAGAAATGGTCTTACATGTAATCAAATATTG
1 ATGCCAATATCCCAGACGTGGTCTTACACAAAATCAAATA-CG
* *
98330622 ATGCCACTATCTCAGACAG-GGTCTTACACAAAATCAAATACG
1 ATGCCAATATCCCAGAC-GTGGTCTTACACAAAATCAAATACG
* *
98330664 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAATATCCCAGACGTGGTCTTACAC-AAAATCA-AA-TACG
* * *
98330708 ATACCAATGTCCTAGACGTGGTCTTACACAA
1 ATGCCAATATCCCAGACGTGGTCTTACACAA
98330739 TAACACATAT
Statistics
Matches: 96, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 25 0.26
43 38 0.40
44 31 0.32
45 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.25
Consensus pattern (42 bp):
ATGCCAATATCCCAGACGTGGTCTTACACAAAATCAAATACG
Found at i:98330680 original size:42 final size:42
Alignment explanation
Indices: 98330610--98330738 Score: 136
Period size: 44 Copynumber: 3.0 Consensus size: 42
98330600 TCTTACATGT
* * * *
98330610 AATCAAATATTGATGCCACTATCTCAGACAG-GGTCTTACACAA
1 AATCAAATA-CGATGCCAATGTCCCAGAC-GTGGTCTTACACAA
*
98330653 AATCAAATACGATGCCAATGTCCCAGACGTGGTCTTACACGTA
1 AATCAAATACGATGCCAATGTCCCAGACGTGGTCTTACAC-AA
* *
98330696 AATCATAAGT-CGATACCAATGTCCTAGACGTGGTCTTACACAA
1 AATCA-AA-TACGATGCCAATGTCCCAGACGTGGTCTTACACAA
98330739 TAACACATAT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
41 1 0.01
42 25 0.34
43 16 0.22
44 31 0.42
45 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (42 bp):
AATCAAATACGATGCCAATGTCCCAGACGTGGTCTTACACAA
Found at i:98332702 original size:57 final size:57
Alignment explanation
Indices: 98332593--98332708 Score: 178
Period size: 57 Copynumber: 2.0 Consensus size: 57
98332583 TGTGAAGCCC
* * **
98332593 ATTGATTAATAGGAATAGCATTAATTACCAAAGCTATTGATGATGATGATTAAATGT
1 ATTGATTAATAGAAATAGCATTAATTACCAAAGCTATTGATGACGACAATTAAATGT
* *
98332650 ATTGATTGATAGAAATAGCATTAATTACCAAAGCTATTGATGACGGCAATTAAATGT
1 ATTGATTAATAGAAATAGCATTAATTACCAAAGCTATTGATGACGACAATTAAATGT
98332707 AT
1 AT
98332709 ACCTCAGAAG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.34
Consensus pattern (57 bp):
ATTGATTAATAGAAATAGCATTAATTACCAAAGCTATTGATGACGACAATTAAATGT
Found at i:98334219 original size:40 final size:40
Alignment explanation
Indices: 98334174--98334303 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
98334164 CGGAATACAA
98334174 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
98334214 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
98334254 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
98334294 CCGGATATAA
1 CCGGATATAA
98334304 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:98340204 original size:46 final size:46
Alignment explanation
Indices: 98340151--98340326 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98340141 TATTTGGGCA
98340151 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98340197 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98340244 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98340290 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98340327 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98340306 original size:93 final size:93
Alignment explanation
Indices: 98340147--98340318 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98340137 GGGATATTTG
* *
98340147 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98340212 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98340240 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98340305 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98340319 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98343290 original size:15 final size:15
Alignment explanation
Indices: 98343270--98343338 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
98343260 GTATCTTGGG
98343270 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
98343285 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
98343300 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
98343315 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
98343330 TTTCTTTAT
1 TTTCTTTAT
98343339 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:98343339 original size:30 final size:30
Alignment explanation
Indices: 98343261--98343348 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
98343251 CATAGTATCG
* * * *
98343261 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
98343291 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
98343321 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
98343349 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:98345781 original size:46 final size:46
Alignment explanation
Indices: 98345731--98345906 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98345721 TATTTGGGCA
98345731 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98345777 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98345824 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98345870 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98345907 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98345886 original size:93 final size:93
Alignment explanation
Indices: 98345727--98345898 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98345717 TGGATATTTG
* *
98345727 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98345792 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98345820 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98345885 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98345899 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98351056 original size:70 final size:71
Alignment explanation
Indices: 98350930--98351092 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
98350920 GAGATGTATC
98350930 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
98350995 AGGACA
66 AGGACA
98351001 CCATGTAGACAAGAGAGCTACGTGAAAG-TAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
98351065 AGGACA
66 AGGACA
98351071 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
98351093 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 64 0.70
71 28 0.30
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:98358572 original size:41 final size:41
Alignment explanation
Indices: 98358527--98358644 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
98358517 TGAAAGATAA
98358527 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
98358568 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
98358598 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
98358639 ATGTAG
1 ATGTAG
98358645 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:98358583 original size:71 final size:71
Alignment explanation
Indices: 98358495--98358658 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
98358485 GAGATGTATC
98358495 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
98358560 AGGACA
66 AGGACA
98358566 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
98358631 AGGACA
66 AGGACA
98358637 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
98358659 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:98364881 original size:29 final size:29
Alignment explanation
Indices: 98364846--98364919 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
98364836 GTTGTGAGAT
* *
98364846 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
98364875 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
98364904 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
98364920 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:98372875 original size:29 final size:29
Alignment explanation
Indices: 98372840--98372913 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
98372830 GTTGTGAGAT
* *
98372840 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
98372869 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
98372898 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
98372914 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:98378576 original size:29 final size:28
Alignment explanation
Indices: 98378517--98378606 Score: 99
Period size: 29 Copynumber: 3.1 Consensus size: 28
98378507 GTGAGCATGA
* *
98378517 ATATAAGGTGATTTGGGCCTAACGGGGC
1 ATATAAGGTGATTTGGGCCTAATGGGCC
*
98378545 ATATAAAGGTGATTTGGGCCTAATAGGCC
1 ATAT-AAGGTGATTTGGGCCTAATGGGCC
** * *
98378574 ATATGAATATGAATTGGGCCTGATGGGCC
1 ATAT-AAGGTGATTTGGGCCTAATGGGCC
98378603 ATAT
1 ATAT
98378607 GAATGAGATG
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
28 4 0.08
29 48 0.92
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.28
Consensus pattern (28 bp):
ATATAAGGTGATTTGGGCCTAATGGGCC
Found at i:98381097 original size:20 final size:21
Alignment explanation
Indices: 98381059--98381097 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
98381049 AATGATTATG
*
98381059 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
*
98381080 GATGA-TTACGAGTCACTT
1 GATGATTTAAGAGTCACTT
98381098 GTTTTTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:98381624 original size:27 final size:27
Alignment explanation
Indices: 98381586--98381677 Score: 105
Period size: 27 Copynumber: 3.3 Consensus size: 27
98381576 ATTGCATGAC
98381586 TATGAATGTGATTGGGCCAATGGGCCA
1 TATGAATGTGATTGGGCCAATGGGCCA
*
98381613 TATGAATGTGATTTGGGCCTAATGGGACA
1 TATGAATGTGA-TTGGGCC-AATGGGCCA
* **
98381642 TATGAGA-GAGATTGGGCCTGTGGGCCA
1 TATGA-ATGTGATTGGGCCAATGGGCCA
*
98381669 TATGCATGT
1 TATGAATGT
98381678 TGTAACACCC
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
26 1 0.02
27 22 0.41
28 14 0.26
29 16 0.30
30 1 0.02
ACGTcount: A:0.25, C:0.13, G:0.34, T:0.28
Consensus pattern (27 bp):
TATGAATGTGATTGGGCCAATGGGCCA
Found at i:98381656 original size:28 final size:28
Alignment explanation
Indices: 98381586--98381660 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 28
98381576 ATTGCATGAC
* *
98381586 TATGAATGTGATTGGGCC-AATGGGCCA
1 TATGAATGAGATTGGGCCTAATGGGACA
*
98381613 TATGAATGTGATTTGGGCCTAATGGGACA
1 TATGAATGAGA-TTGGGCCTAATGGGACA
98381642 TATGAGA-GAGATTGGGCCT
1 TATGA-ATGAGATTGGGCCT
98381661 GTGGGCCATA
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
27 11 0.26
28 15 0.35
29 16 0.37
30 1 0.02
ACGTcount: A:0.27, C:0.12, G:0.33, T:0.28
Consensus pattern (28 bp):
TATGAATGAGATTGGGCCTAATGGGACA
Found at i:98383126 original size:40 final size:39
Alignment explanation
Indices: 98383068--98383209 Score: 135
Period size: 40 Copynumber: 3.6 Consensus size: 39
98383058 GGATATAGCG
* * * *
98383068 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
98383108 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGG-TTTAGTA
* * *
98383148 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCCGG-TTTAGTA
*
98383188 ACTCGCACAAATGCCTTCGGGA
1 ACTCGCACAATTGCCTTCGGGA
98383210 GTTGACCCGG
Statistics
Matches: 85, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
39 3 0.04
40 78 0.92
41 4 0.05
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:98383180 original size:80 final size:80
Alignment explanation
Indices: 98383068--98383259 Score: 208
Period size: 80 Copynumber: 2.4 Consensus size: 80
98383058 GGATATAGCG
* * * * * * *
98383068 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
98383133 -AGCCCGGATTTAATA
66 GA-CCCGGATTTAATA
* * * *
98383148 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
* *
98383213 GACCCGGATTTAGTC
66 GACCCGGATTTAATA
* * *
98383228 ACTTAG-ACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGG
98383260 ACACCATTCG
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
80 90 0.97
81 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
GACCCGGATTTAATA
Found at i:98383218 original size:40 final size:39
Alignment explanation
Indices: 98383110--98383260 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
98383100 TTATAGTGAT
*
98383110 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAATAAC
* * * **
98383150 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAATAAC
* * *
98383190 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAATAAC
* * *
98383230 TTAG-ACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGAATTA-CCCGGA
98383261 CACCATTCGA
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.96
41 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTACCCGGATTTAATAAC
Found at i:98391167 original size:40 final size:40
Alignment explanation
Indices: 98391096--98391274 Score: 184
Period size: 40 Copynumber: 4.5 Consensus size: 40
98391086 GCTCGATTGT
* * * *
98391096 CTTC-GGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
* * *
98391135 CTTCGGGAATTAGCCCGGATTTAATAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
98391175 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
98391215 CTTCGGGAGTT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
98391256 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
98391275 CACCATTCGA
Statistics
Matches: 114, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
39 4 0.04
40 81 0.71
41 28 0.25
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:98391220 original size:80 final size:81
Alignment explanation
Indices: 98391123--98391273 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 81
98391113 TTATAGTGAT
* * * *
98391123 TCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAATAAC-TCGCACGAATGCCTTCGGGACTT
1 TCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAATAACTTAGCACAAAAGCCTTCGGGACTT
98391186 AACCCGGTTTTGGTAAC
65 AACCCGGTTTTGGTAAC
* * *
98391203 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTA
1 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAATAACTTAGCACAAAAGCCTTCGGGACTTA
*
98391268 GCCCGG
66 ACCCGG
98391274 ACACCATTCG
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
80 34 0.56
81 27 0.44
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (81 bp):
TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAATAACTTAGCACAAAAGCCTTCGGGACTTA
ACCCGGTTTTGGTAAC
Found at i:98394206 original size:17 final size:18
Alignment explanation
Indices: 98394173--98394206 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
98394163 TTTAAAGAAG
98394173 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
98394191 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
98394207 CTTCAATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:98397586 original size:71 final size:71
Alignment explanation
Indices: 98397502--98397665 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
98397492 CGATTTGTCT
98397502 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98397567 CTTTCA
66 CTTTCA
98397573 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98397638 CTTTCA
66 CTTTCA
98397644 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
98397666 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:98397703 original size:71 final size:70
Alignment explanation
Indices: 98397502--98397699 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
98397492 CGATTTGTCT
* * * *
98397502 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
98397567 CTTTCA
65 CTTTCA
* * * *
98397573 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
98397638 CTTTCA
65 CTTTCA
* *
98397644 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
98397700 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:98405158 original size:71 final size:71
Alignment explanation
Indices: 98405074--98405237 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
98405064 CGATTTGTCT
98405074 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98405139 CTTTCA
66 CTTTCA
98405145 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
98405210 CTTTCA
66 CTTTCA
98405216 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
98405238 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:98405275 original size:71 final size:70
Alignment explanation
Indices: 98405074--98405271 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
98405064 CGATTTGTCT
* * * *
98405074 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
98405139 CTTTCA
65 CTTTCA
* * * *
98405145 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
98405210 CTTTCA
65 CTTTCA
* *
98405216 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
98405272 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:98408905 original size:10 final size:10
Alignment explanation
Indices: 98408890--98408939 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
98408880 TAATTTTAGG
98408890 ATTTAT-TTT
1 ATTTATCTTT
98408899 CATTTATCTTT
1 -ATTTATCTTT
*
98408910 AATTATCTTT
1 ATTTATCTTT
98408920 ATTTAT-TTGT
1 ATTTATCTT-T
*
98408930 ATTTACCTTT
1 ATTTATCTTT
98408940 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 27 0.79
11 5 0.15
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:98412853 original size:28 final size:27
Alignment explanation
Indices: 98412790--98412859 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
98412780 ATAGTGAGTC
98412790 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
98412817 CACACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
98412845 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
98412860 GTACAAGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:98420216 original size:28 final size:27
Alignment explanation
Indices: 98420153--98420222 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
98420143 ATAGTGAGTC
98420153 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
98420180 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
98420208 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
98420223 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:98422847 original size:37 final size:34
Alignment explanation
Indices: 98422797--98422868 Score: 81
Period size: 37 Copynumber: 2.0 Consensus size: 34
98422787 AGTGTGCCGT
* *
98422797 TTTTTCTGACCATCTTTCCTCCTCCTCCTTTCTTTTC
1 TTTTTCTCACCATC-TACCTCCTCCT-C-TTCTTTTC
* *
98422834 TTTTTCTCCCCATCTACCTTCTCCTCTTCTTTTC
1 TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
98422868 T
1 T
98422869 CCATAGCTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 9 0.29
35 1 0.03
36 9 0.29
37 12 0.39
ACGTcount: A:0.06, C:0.39, G:0.01, T:0.54
Consensus pattern (34 bp):
TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
Found at i:98424206 original size:81 final size:81
Alignment explanation
Indices: 98424071--98424229 Score: 309
Period size: 81 Copynumber: 2.0 Consensus size: 81
98424061 TGGGATACTG
*
98424071 ATGGAGGAAGTACTGAAAGTGGCTTGTCCACGTATTGGAGGCTTTGCCTCAACTTACTGATAACT
1 ATGGAGGAAGTACTGAAAGTGGCTTGTCCACGTACTGGAGGCTTTGCCTCAACTTACTGATAACT
98424136 GAGCAGCAATGCTGCA
66 GAGCAGCAATGCTGCA
98424152 ATGGAGGAAGTACTGAAAGTGGCTTGTCCACGTACTGGAGGCTTTGCCTCAACTTACTGATAACT
1 ATGGAGGAAGTACTGAAAGTGGCTTGTCCACGTACTGGAGGCTTTGCCTCAACTTACTGATAACT
98424217 GAGCAGCAATGCT
66 GAGCAGCAATGCT
98424230 ACAACTGTGG
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (81 bp):
ATGGAGGAAGTACTGAAAGTGGCTTGTCCACGTACTGGAGGCTTTGCCTCAACTTACTGATAACT
GAGCAGCAATGCTGCA
Found at i:98439677 original size:10 final size:10
Alignment explanation
Indices: 98439662--98439707 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
98439652 TAATTTTAGG
98439662 ATTTAT-TTT
1 ATTTATCTTT
98439671 CATTTATCTTT
1 -ATTTATCTTT
*
98439682 AATTATCTTT
1 ATTTATCTTT
98439692 ATTTAT-TTGT
1 ATTTATCTT-T
98439702 ATTTAT
1 ATTTAT
98439708 ATTTTAGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 2 0.06
10 27 0.84
11 3 0.09
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:98442760 original size:39 final size:40
Alignment explanation
Indices: 98442702--98442802 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
98442692 AAATTGAATG
* *
98442702 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
98442741 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
98442781 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
98442803 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:98442795 original size:40 final size:40
Alignment explanation
Indices: 98442702--98442852 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
98442692 AAATTGAATG
* * * * *
98442702 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
98442741 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
98442781 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
98442821 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
98442853 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:98442867 original size:40 final size:38
Alignment explanation
Indices: 98442698--98442869 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
98442688 TGAGAAATTG
* *
98442698 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
98442737 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
98442774 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
98442814 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
98442854 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
98442870 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:98450533 original size:40 final size:39
Alignment explanation
Indices: 98450474--98450574 Score: 121
Period size: 40 Copynumber: 2.6 Consensus size: 39
98450464 AAATTGAATG
* * *
98450474 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAG-AACT
* * * **
98450514 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAACT
98450553 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
98450575 GCATTCGTGC
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
39 22 0.42
40 30 0.58
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAACT
Found at i:98450567 original size:39 final size:39
Alignment explanation
Indices: 98450474--98450622 Score: 167
Period size: 38 Copynumber: 3.8 Consensus size: 39
98450464 AAATTGAATG
* * * * *
98450474 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TATT
* **
98450514 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTATT
*
98450553 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTTTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTATT
* *
98450591 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
98450623 AAATCGTGAT
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
38 34 0.36
39 30 0.32
40 30 0.32
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTATT
Found at i:98454239 original size:15 final size:15
Alignment explanation
Indices: 98454219--98454287 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
98454209 GTATCTTGGG
98454219 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
98454234 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
98454249 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
98454264 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
98454279 TTTCTTTAT
1 TTTCTTTAT
98454288 TCGGTTTCTT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:98454288 original size:30 final size:30
Alignment explanation
Indices: 98454210--98454296 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
98454200 CATAGTATCG
* * * * *
98454210 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGGTTTCTC
98454240 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGGTTTCTC
98454270 TATCTTGGATTTCTTTATTC--GGTTTCT
1 TATCTTGGATTTCTTTATTCTGGGTTTCT
98454297 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
28 7 0.14
29 1 0.02
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGTTTCTC
Found at i:98456734 original size:46 final size:46
Alignment explanation
Indices: 98456681--98456856 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98456671 ATATTTGGCA
98456681 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98456727 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98456774 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98456820 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98456857 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98456836 original size:93 final size:93
Alignment explanation
Indices: 98456677--98456848 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98456667 TGGGATATTT
* *
98456677 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98456742 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98456770 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98456835 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98456849 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98465584 original size:73 final size:73
Alignment explanation
Indices: 98465461--98465598 Score: 258
Period size: 73 Copynumber: 1.9 Consensus size: 73
98465451 ATGGTTAGGA
* *
98465461 TAGGTGGAATACTCATGCTTTTTTCAAATATTCTAACTCAATCCTTATACTTTTCAAATGCTTCT
1 TAGGTGGAATACTCATGCCTTTTTCAAATATTCTAACTCAATCCTCATACTTTTCAAATGCTTCT
98465526 AGTCAGGT
66 AGTCAGGT
98465534 TAGGTGGAATACTCATGCCTTTTTCAAATATTCTAACTCAATCCTCATACTTTTCAAATGCTTCT
1 TAGGTGGAATACTCATGCCTTTTTCAAATATTCTAACTCAATCCTCATACTTTTCAAATGCTTCT
98465599 TATTATTTGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 63 1.00
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.41
Consensus pattern (73 bp):
TAGGTGGAATACTCATGCCTTTTTCAAATATTCTAACTCAATCCTCATACTTTTCAAATGCTTCT
AGTCAGGT
Found at i:98474304 original size:31 final size:31
Alignment explanation
Indices: 98474260--98474333 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 31
98474250 GTCCCAAGTC
*
98474260 ACACAGGCGTGTGAGTCCACACGGCCCATCT
1 ACACGGGCGTGTGAGTCCACACGGCCCATCT
* *
98474291 ACACGGGTGTGTGAGTCCACACGGCCCTTCT
1 ACACGGGCGTGTGAGTCCACACGGCCCATCT
98474322 ACACGGGCGTGT
1 ACACGGGCGTGT
98474334 AACACTTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (31 bp):
ACACGGGCGTGTGAGTCCACACGGCCCATCT
Found at i:98475509 original size:46 final size:47
Alignment explanation
Indices: 98475425--98475639 Score: 201
Period size: 46 Copynumber: 4.6 Consensus size: 47
98475415 TCCATCAAGT
* * * *
98475425 CGATGCCATGGCCCAGACATTGTCTTACAC-CG-ACACATCTTGTA-GC
1 CGATG-CATGTCCCAGACA-TGTCTTACACTGGCTCTCATCTTGTAGGC
* *
98475471 CGATGCATGTCCTAGACATGTCTTACACTGGCT-TACATCTCG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTTGTAGGC
* ** *
98475517 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATC-TCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTTGTAGGC
* * * **
98475563 CGATGCTATGTCCCAAATATGGTCTTACACTGGCTCTTATAATGT-GGC
1 CGATGC-ATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTTGTAGGC
98475611 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
98475640 AGCACACAAT
Statistics
Matches: 139, Mismatches: 21, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
44 10 0.07
45 13 0.09
46 67 0.48
47 23 0.17
48 25 0.18
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTTGTAGGC
Found at i:98482564 original size:48 final size:45
Alignment explanation
Indices: 98482481--98482606 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 45
98482471 CTCGTAGTTG
*
98482481 ATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCAA-TG-CCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCA--T-AAGTGTCCA
*
98482527 ATGCCATGTTCCAGACATGATCTTACACTAGCTCTCATAATGTGTCCA
1 ATG-CATGTCCCAGACATG-TCTTACACTAGCTCTCATAA-GTGTCCA
98482575 ATGCATGTCCCAGACATGTCTTACACTAGCTC
1 ATGCATGTCCCAGACATGTCTTACACTAGCTC
98482607 ACAATAGCTC
Statistics
Matches: 72, Mismatches: 3, Indels: 10
0.85 0.04 0.12
Matches are distributed among these distances:
45 2 0.03
46 18 0.25
47 30 0.42
48 22 0.31
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGTCCA
Found at i:98489490 original size:44 final size:44
Alignment explanation
Indices: 98489425--98489508 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
98489415 TTGATATCTC
* *
98489425 AAAGTCCATGGTTGTACCATGGCAATTAAGGAAGAATTGATGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATGGA
* *
98489469 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGA
98489509 CGATTAAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 3 0.09
44 32 0.91
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATGGA
Found at i:98489764 original size:53 final size:54
Alignment explanation
Indices: 98489701--98489905 Score: 231
Period size: 53 Copynumber: 3.9 Consensus size: 54
98489691 TTGGTAAGAT
* *
98489701 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA-AAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
98489754 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATT-ATGAGTTACTATAA-GC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * *
98489807 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
98489860 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
98489906 AAAAATGAAA
Statistics
Matches: 130, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
52 14 0.11
53 104 0.80
54 12 0.09
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:98499300 original size:46 final size:46
Alignment explanation
Indices: 98499242--98499654 Score: 664
Period size: 46 Copynumber: 9.0 Consensus size: 46
98499232 TTTCTGTCAT
* *
98499242 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
*
98499288 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
** *
98499334 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* * *
98499380 GTTGCCATGGTATCTATCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
*
98499426 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
** *
98499472 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* * *
98499518 GTTGCCATGGTATTTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
98499564 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
**
98499610 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
98499655 GAGAGCACAC
Statistics
Matches: 339, Mismatches: 28, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 339 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
Found at i:98499447 original size:138 final size:138
Alignment explanation
Indices: 98499242--98499655 Score: 801
Period size: 138 Copynumber: 3.0 Consensus size: 138
98499232 TTTCTGTCAT
98499242 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
98499307 ACCATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
66 ACCATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
98499372 CATATCAG
131 CATATCAG
*
98499380 GTTGCCATGGTATCTATCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
98499445 ACCATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
66 ACCATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
98499510 CATATCAG
131 CATATCAG
*
98499518 GTTGCCATGGTATTTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
*
98499583 ACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
66 ACCATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
98499648 CATATCAG
131 CATATCAG
98499656 AGAGCACACT
Statistics
Matches: 272, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 272 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (138 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
ACCATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
CATATCAG
Found at i:98501701 original size:15 final size:15
Alignment explanation
Indices: 98501681--98501718 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
98501671 AATTTTTCCC
*
98501681 TTTTTCCTTCTTTCT
1 TTTTTCCTTCCTTCT
98501696 TTTTTCCTTCCTTCT
1 TTTTTCCTTCCTTCT
98501711 TTCTTTCC
1 TT-TTTCC
98501719 CCTGCTCTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTTCCTTCCTTCT
Found at i:98501792 original size:2 final size:2
Alignment explanation
Indices: 98501785--98501819 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
98501775 TCTTTTACTT
98501785 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
98501820 ATAACTTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:98511174 original size:22 final size:22
Alignment explanation
Indices: 98511145--98511204 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 22
98511135 GAGAATGAAC
98511145 TACA-TGCTCTCACTCGCCACA
1 TACACTGCTCTCACTCGCCACA
* * *
98511166 TACACTGCTCCCACTCACCATA
1 TACACTGCTCTCACTCGCCACA
* *
98511188 TACACTTCTCTCCCTCG
1 TACACTGCTCTCACTCG
98511205 AAGTGATGGC
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 4 0.13
22 27 0.87
ACGTcount: A:0.22, C:0.45, G:0.07, T:0.27
Consensus pattern (22 bp):
TACACTGCTCTCACTCGCCACA
Found at i:98513818 original size:19 final size:19
Alignment explanation
Indices: 98513790--98513827 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
98513780 GAGCAAAAGG
98513790 AATAAGAAAA-GGGCCAAA
1 AATAAGAAAATGGGCCAAA
98513808 AATAGAGAAAATGGGCCAAA
1 AATA-AGAAAATGGGCCAAA
98513828 GTATGACATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 6 0.33
20 8 0.44
ACGTcount: A:0.58, C:0.11, G:0.24, T:0.08
Consensus pattern (19 bp):
AATAAGAAAATGGGCCAAA
Found at i:98514327 original size:13 final size:13
Alignment explanation
Indices: 98514295--98514329 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
98514285 AAATATTTAA
98514295 CTTGTTTTTAATT
1 CTTGTTTTTAATT
*
98514308 ATGTGTTTTTAATT
1 CT-TGTTTTTAATT
98514322 CTTGTTTT
1 CTTGTTTT
98514330 GATATCCCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.14, C:0.06, G:0.11, T:0.69
Consensus pattern (13 bp):
CTTGTTTTTAATT
Found at i:98522440 original size:114 final size:113
Alignment explanation
Indices: 98522241--98522536 Score: 333
Period size: 114 Copynumber: 2.6 Consensus size: 113
98522231 TTTGAATTAG
* * * *
98522241 GTGTTATTCAAGCTTACTGCCTAGCTGGCTCAATGCCATTGTTATCAGGCTTAGTGGCTAGTAGG
1 GTGTTATTCAAGCTTAGTGCCGAGCAGGCTCAATGCCAGTGTTATCAGGCTTAGTGGCTAGTAGG
** * **
98522306 CTTTGTACCTGTGTTATTCAGGCTTAGTGCCTAGCAGGCTTTGTGCCA
66 CTTCATACCTGTGTTATTCAGGCTTAGGGCCTAGCAGGCTTCATGCCA
* * * * *
98522354 GTGTTATTCAAGCTTAGTGTCGAGGAGGCTCAGTGCTAGTGTTATTTAGGCTTAGTGGCTAGTAG
1 GTGTTATTCAAGCTTAGTGCCGAGCAGGCTCAATGCCAGTGTTA-TCAGGCTTAGTGGCTAGTAG
* * * *
98522419 GCTTCAT-GCTGGTGTTGTTCAGGCTTAGGGCCTAGCAGGCTTCATTCCG
65 GCTTCATACCT-GTGTTATTCAGGCTTAGGGCCTAGCAGGCTTCATGCCA
* * * * * * *
98522468 GTGTTATTCAAGCTTAGTGCCTAGTAGGCTCAATGCCGGTGTTATGCAAGCTTAGCGCCTACTAG
1 GTGTTATTCAAGCTTAGTGCCGAGCAGGCTCAATGCCAGTGTTAT-CAGGCTTAGTGGCTAGTAG
98522533 GCTT
65 GCTT
98522537 TGTGTCAGTG
Statistics
Matches: 151, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
113 39 0.26
114 112 0.74
ACGTcount: A:0.18, C:0.20, G:0.28, T:0.34
Consensus pattern (113 bp):
GTGTTATTCAAGCTTAGTGCCGAGCAGGCTCAATGCCAGTGTTATCAGGCTTAGTGGCTAGTAGG
CTTCATACCTGTGTTATTCAGGCTTAGGGCCTAGCAGGCTTCATGCCA
Found at i:98522507 original size:38 final size:38
Alignment explanation
Indices: 98522240--98522535 Score: 231
Period size: 38 Copynumber: 7.8 Consensus size: 38
98522230 ATTTGAATTA
*
98522240 GGTGTTATTCAAGCTTACTGCCTAGCT-GGCTCAATGCC
1 GGTGTTATTCAAGCTTAGTGCCTAG-TAGGCTCAATGCC
** * * *** *
98522278 ATTGTTA-TCAGGCTTAGTGGCTAGTAGGCTTTGTACC
1 GGTGTTATTCAAGCTTAGTGCCTAGTAGGCTCAATGCC
* * * ***
98522315 TGTGTTATTCAGGCTTAGTGCCTAGCAGGCTTTGTGCC
1 GGTGTTATTCAAGCTTAGTGCCTAGTAGGCTCAATGCC
* * * * * *
98522353 AGTGTTATTCAAGCTTAGTGTCGAGGAGGCTCAGTGCT
1 GGTGTTATTCAAGCTTAGTGCCTAGTAGGCTCAATGCC
* * * * *
98522391 AGTGTTATTTAGGCTTAGTGGCTAGTAGGCTTC-ATGCT
1 GGTGTTATTCAAGCTTAGTGCCTAGTAGGC-TCAATGCC
* * * * *
98522429 GGTGTTGTTCAGGCTTAGGGCCTAGCAGGCTTC-ATTCC
1 GGTGTTATTCAAGCTTAGTGCCTAGTAGGC-TCAATGCC
98522467 GGTGTTATTCAAGCTTAGTGCCTAGTAGGCTCAATGCC
1 GGTGTTATTCAAGCTTAGTGCCTAGTAGGCTCAATGCC
* * *
98522505 GGTGTTATGCAAGCTTAGCGCCTACTAGGCT
1 GGTGTTATTCAAGCTTAGTGCCTAGTAGGCT
98522536 TTGTGTCAGT
Statistics
Matches: 210, Mismatches: 44, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
36 1 0.00
37 28 0.13
38 179 0.85
39 2 0.01
ACGTcount: A:0.18, C:0.20, G:0.28, T:0.34
Consensus pattern (38 bp):
GGTGTTATTCAAGCTTAGTGCCTAGTAGGCTCAATGCC
Found at i:98525531 original size:17 final size:16
Alignment explanation
Indices: 98525501--98525535 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
98525491 GATTTAAAAA
98525501 AATTAATAAATTTCTC
1 AATTAATAAATTTCTC
*
98525517 AATTACATAATTTTCTC
1 AATTA-ATAAATTTCTC
98525534 AA
1 AA
98525536 CTCGATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (16 bp):
AATTAATAAATTTCTC
Found at i:98529326 original size:40 final size:40
Alignment explanation
Indices: 98529255--98529426 Score: 154
Period size: 40 Copynumber: 4.3 Consensus size: 40
98529245 TGAGAAATTG
* * *
98529255 AATTCTATCCGGGCTAAG-CCTCG-AGGACAATTATGCTGGA
1 AATTATATCCGGGCTAAGACC-CGAAGG-CAATTGTGCTGGT
* *
98529295 AATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGT
1 AATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT
***
98529335 GGCTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGT
1 AATTATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GT
* * * **
98529375 TATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGT
1 AATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT
*
98529415 GATTATATCCGG
1 AATTATATCCGG
98529427 TTATATTCCG
Statistics
Matches: 108, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
39 3 0.03
40 98 0.91
41 7 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
AATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT
Found at i:98532614 original size:59 final size:59
Alignment explanation
Indices: 98532522--98532640 Score: 229
Period size: 59 Copynumber: 2.0 Consensus size: 59
98532512 GAAGTCATGC
98532522 ATACATAGTCCATAATCCACTTAAGAGTAAGGTATGCCACACTATAAATCTTATGTAAT
1 ATACATAGTCCATAATCCACTTAAGAGTAAGGTATGCCACACTATAAATCTTATGTAAT
*
98532581 ATACATAGTCCATAATCCACTTAAGAGTAAGGTATGTCACACTATAAATCTTATGTAAT
1 ATACATAGTCCATAATCCACTTAAGAGTAAGGTATGCCACACTATAAATCTTATGTAAT
98532640 A
1 A
98532641 CCCCGCCCAG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (59 bp):
ATACATAGTCCATAATCCACTTAAGAGTAAGGTATGCCACACTATAAATCTTATGTAAT
Found at i:98533606 original size:41 final size:41
Alignment explanation
Indices: 98533561--98533698 Score: 159
Period size: 41 Copynumber: 3.4 Consensus size: 41
98533551 CGTTTCACCA
* *
98533561 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTTGT
1 AAAACGCCACTAAAAACCAGAACATTAGCGGCGCTTTTTGT
** * *
98533602 AAAACGCCGTTAAAAGCCAGAACATTAGCGGCACTTTTTGT
1 AAAACGCCACTAAAAACCAGAACATTAGCGGCGCTTTTTGT
* * * * * *
98533643 AAAACGCCACTAAAAATCGGATCATTGGCAGCGCTTTTGGT
1 AAAACGCCACTAAAAACCAGAACATTAGCGGCGCTTTTTGT
*
98533684 AAAATGCCACTAAAA
1 AAAACGCCACTAAAA
98533699 GTCATATAAC
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 82 1.00
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (41 bp):
AAAACGCCACTAAAAACCAGAACATTAGCGGCGCTTTTTGT
Found at i:98534311 original size:21 final size:22
Alignment explanation
Indices: 98534275--98534315 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
98534265 TTGAGGTTTA
*
98534275 AGGTTTAGGTGTTAGGGGTTAT
1 AGGTTAAGGTGTTAGGGGTTAT
98534297 AGGTTAAGG-GTTAGGGGTT
1 AGGTTAAGGTGTTAGGGGTT
98534316 CATGATTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.20, C:0.00, G:0.44, T:0.37
Consensus pattern (22 bp):
AGGTTAAGGTGTTAGGGGTTAT
Found at i:98534482 original size:7 final size:7
Alignment explanation
Indices: 98534472--98534528 Score: 51
Period size: 7 Copynumber: 8.1 Consensus size: 7
98534462 TATATTTATA
98534472 GTTTAGG
1 GTTTAGG
98534479 GTTTAGG
1 GTTTAGG
*
98534486 GTTTAAG
1 GTTTAGG
** *
98534493 ACTTATG
1 GTTTAGG
98534500 GTTTAGG
1 GTTTAGG
*
98534507 GTTTAGT
1 GTTTAGG
* *
98534514 TTTTAGT
1 GTTTAGG
98534521 GTTTAGG
1 GTTTAGG
98534528 G
1 G
98534529 ATAAATATGG
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.18, C:0.02, G:0.33, T:0.47
Consensus pattern (7 bp):
GTTTAGG
Found at i:98534490 original size:21 final size:21
Alignment explanation
Indices: 98534466--98534528 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
98534456 GTTAATTATA
98534466 TTTATAGTTTAGGGTTTAGGG
1 TTTATAGTTTAGGGTTTAGGG
* *
98534487 TTTA-AGACTTATGGTTTAGGG
1 TTTATAG-TTTAGGGTTTAGGG
* *
98534508 TTTAGT-TTTTAGTGTTTAGGG
1 TTTA-TAGTTTAGGGTTTAGGG
98534529 ATAAATATGG
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
20 2 0.06
21 31 0.94
ACGTcount: A:0.19, C:0.02, G:0.30, T:0.49
Consensus pattern (21 bp):
TTTATAGTTTAGGGTTTAGGG
Found at i:98535320 original size:3 final size:3
Alignment explanation
Indices: 98535210--98535300 Score: 132
Period size: 3 Copynumber: 30.7 Consensus size: 3
98535200 AATAGATTTT
* *
98535210 GAA G-A GAA GGA GAA TGAG GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
*
98535255 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAG GAA G-A GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
98535301 GGGGGGAGGA
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
2 4 0.05
3 73 0.92
4 2 0.03
ACGTcount: A:0.62, C:0.00, G:0.37, T:0.01
Consensus pattern (3 bp):
GAA
Found at i:98539913 original size:43 final size:43
Alignment explanation
Indices: 98539749--98539995 Score: 169
Period size: 43 Copynumber: 5.8 Consensus size: 43
98539739 AATATTTTTT
* * * * * *
98539749 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGAGAAAAGCGTCAC
1 TAAAAGTCGTGGTCTTTAGCGGCGTTTGAGAAAAAAGCGCCGC
* * *
98539792 TAAAGGTC-T-GTTTTATAGCGGCGTTTGTAG-GAAAAGCGCCGC
1 TAAAAGTCGTGGTCTT-TAGCGGCGTTTG-AGAAAAAAGCGCCGC
* ** ** * ** ** *
98539834 T-AAAGACCACGACCTTTAGCGGTGTTTTCGGGAAAAGCGCCGT
1 TAAAAG-TCGTGGTCTTTAGCGGCGTTTGAGAAAAAAGCGCCGC
* * *
98539877 TAAAGGTCGTGGTCTTTAGTGGCGTTTGAGAAAAAAGCGCCAC
1 TAAAAGTCGTGGTCTTTAGCGGCGTTTGAGAAAAAAGCGCCGC
* * ** *
98539920 TAAAAGTCATGGTCTTTTGCGGCGTTTGAGAAAAAAATGTCGC
1 TAAAAGTCGTGGTCTTTAGCGGCGTTTGAGAAAAAAGCGCCGC
* *
98539963 TAAAAGTCGTGGTCTTTAGCGGCGCTTGTGAAA
1 TAAAAGTCGTGGTCTTTAGCGGCGTTTGAGAAA
98539996 CACCGCTAAT
Statistics
Matches: 157, Mismatches: 40, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
41 7 0.04
42 26 0.17
43 119 0.76
44 5 0.03
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (43 bp):
TAAAAGTCGTGGTCTTTAGCGGCGTTTGAGAAAAAAGCGCCGC
Found at i:98549936 original size:40 final size:39
Alignment explanation
Indices: 98549768--98549947 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 39
98549758 AGAAATTGAA
* *
98549768 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
98549808 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
98549848 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
98549888 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
*
98549928 TGATATCCGGG-TAAGTCCCG
1 TGATATCCGGGCTAAGACCCG
98549948 TTGGCCTTGG
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 12 0.10
40 95 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:98562005 original size:80 final size:80
Alignment explanation
Indices: 98561897--98562047 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 80
98561887 TAGTAATTAT
* *
98561897 ATCCGGGTTAAGACCCGAAGGCCATTGTGCTAGT-GAGCACATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCCATTGTGCAAGTCGAGC-CATCCGGGCTAAGACCCGAAGGCAT
98561961 TCGTGCAAGTTGTTAA
65 TCGTGCAAGTTGTTAA
* ** **
98561977 ATCCGGGCTAATACCCGAAGG-CATTTGTGCAAGTCGTTCTTTCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCCA-TTGTGCAAGTCGAGCCATCCGGGCTAAGACCCGAAGGCAT
98562041 TCGTGCA
65 TCGTGCA
98562048 TGTGGATATA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 2 0.03
80 58 0.94
81 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCCATTGTGCAAGTCGAGCCATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTGTTAA
Found at i:98562062 original size:40 final size:39
Alignment explanation
Indices: 98561856--98562062 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 39
98561846 CAATTGAATG
* * ** * *
98561856 ATATCCGGGCTAAGTCCCGAAGACATTTATG-TAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGA-T
* * *
98561895 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGAGC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTGA-T
* *
98561935 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGAT
* * * *
98561975 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GAT
* * *
98562015 CTTTCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GAT
98562055 ATATCCGG
1 ATATCCGG
98562063 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
39 27 0.20
40 109 0.79
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGAT
Found at i:98570528 original size:119 final size:120
Alignment explanation
Indices: 98570344--98570568 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
98570334 GCTACTCGTT
* *
98570344 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGAGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
98570409 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
98570464 CAAATGCCTTCGAG-CTTAGCCCGGA-ATTAGTAACTCGCACGAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGAGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
98570526 GGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
98570569 CATCATTCGA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 67 0.73
120 21 0.23
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGAGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:98570568 original size:40 final size:40
Alignment explanation
Indices: 98570325--98570568 Score: 300
Period size: 40 Copynumber: 6.1 Consensus size: 40
98570315 CGGAGTTTAA
** *
98570325 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98570365 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98570405 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98570445 CCGGATTTAGTAACTCGCACAAATGCCTTCGAG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98570484 CCGGA-ATTAGTAACTCGCACGAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
98570524 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
98570564 CCGGA
1 CCGGA
98570569 CATCATTCGA
Statistics
Matches: 180, Mismatches: 17, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 33 0.18
40 135 0.75
41 11 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:98574342 original size:3 final size:3
Alignment explanation
Indices: 98574334--98574360 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
98574324 AAATATACAA
98574334 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
98574361 GACAACATCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:98575266 original size:23 final size:24
Alignment explanation
Indices: 98575226--98575270 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
98575216 CAAGTCCTAC
*
98575226 CCATCCAGCCTCTACACTCCATCT
1 CCATCCAACCTCTACACTCCATCT
98575250 CCATCCAACC-CTACACTCCAT
1 CCATCCAACCTCTACACTCCAT
98575271 GTGGGGACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.24, C:0.51, G:0.02, T:0.22
Consensus pattern (24 bp):
CCATCCAACCTCTACACTCCATCT
Found at i:98575574 original size:27 final size:27
Alignment explanation
Indices: 98575535--98575831 Score: 298
Period size: 27 Copynumber: 11.0 Consensus size: 27
98575525 AAACATACAT
**
98575535 CACAT-AGGAGCAAAACAGTCATCCTAC
1 CACATAAGG-GCAAAACAGTCATTTTAC
* *
98575562 CACATTAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
98575589 CTCATAAGGGCAAAATC-GTCATTTTAA
1 CACATAAGGGCAAAA-CAGTCATTTTAC
*
98575616 CACATAAGGGCAAAACTA-TCATTTTAA
1 CACATAAGGGCAAAAC-AGTCATTTTAC
* * *
98575643 CACATAAGGGCAAATCATTCATTTTGC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
98575670 TACATAAGGGAAAAACTGTCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
98575697 CATATAAGGG-AAAACTGTCATTTTAA
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
98575723 CACATAAGGTCAAAACAGTCATTTTGC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
98575750 CACATAAGGGCAAAATC-GTCATTTTAT
1 CACATAAGGGCAAAA-CAGTCATTTTAC
*** *
98575777 CACATAAGGGCAAAATTCTCATTTTAA
1 CACATAAGGGCAAAACAGTCATTTTAC
*
98575804 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
98575831 C
1 C
98575832 TTATAGGGGT
Statistics
Matches: 226, Mismatches: 36, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
26 25 0.11
27 197 0.87
28 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:98575819 original size:134 final size:133
Alignment explanation
Indices: 98575579--98575829 Score: 321
Period size: 134 Copynumber: 1.9 Consensus size: 133
98575569 GGGCAAAATA
* *
98575579 GTCATTTTACCTCATAAGGGCAAAATCGTCATTTTAACACATAAGGGCAAAACTATCATTTTAAC
1 GTCATTTTAACACATAAGGGCAAAATCGTCATTTTAACACATAAGGGCAAAACTATCATTTTAAC
* **
98575644 ACATAAGGGCAAATCATTCATTTTGCTACATAAGGGAAAAACTGTCATTTTATCATATAAGGGAA
66 ACATAAGGGCAAATCA-TCATTTTACTACATAAGGGAAAAACAATCATTTTATCATATAAGGGAA
98575709 AACT
130 AACT
* ** *
98575713 GTCATTTTAACACATAAGGTCAAAA-CAGTCATTTTGCCACATAAGGGCAAAA-TCGTCATTTTA
1 GTCATTTTAACACATAAGGGCAAAATC-GTCATTTTAACACATAAGGGCAAAACT-ATCATTTTA
* *
98575776 TCACATAAGGGCAAAATTC-TCATTTTAAC-ACATAAGGGCAAAACAATCATTTTA
64 ACACATAAGGGC-AAA-TCATCATTTT-ACTACATAAGGGAAAAACAATCATTTTA
98575830 CCTTATAGGG
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
133 2 0.02
134 93 0.92
135 4 0.04
136 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (133 bp):
GTCATTTTAACACATAAGGGCAAAATCGTCATTTTAACACATAAGGGCAAAACTATCATTTTAAC
ACATAAGGGCAAATCATCATTTTACTACATAAGGGAAAAACAATCATTTTATCATATAAGGGAAA
ACT
Found at i:98575848 original size:27 final size:27
Alignment explanation
Indices: 98575818--98576311 Score: 207
Period size: 27 Copynumber: 18.0 Consensus size: 27
98575808 TAAGGGCAAA
*
98575818 ACAATCATTTTACCTTATAGGGGTATT
1 ACAATCATTTTACCCTATAGGGGTATT
*
98575845 ACAATCATTTTACCCTATGGGGGTATTTAGGGT
1 ACAATCATTTTACCCTATAGGGGTA--T----T
*
98575878 ATTTCGATCATTTTACCCTATTA-GGGTATT
1 A---CAATCATTTTACCCTA-TAGGGGTATT
* ** *
98575908 GCTGTCATTTTACCCTATGGGGGTATT
1 ACAATCATTTTACCCTATAGGGGTATT
**** *
98575935 TTGGTCATTTGACCCTAT-GGGGTATT
1 ACAATCATTTTACCCTATAGGGGTATT
*
98575961 TCAATCATTTTACCCTATTA-GGGTATT
1 ACAATCATTTTACCCTA-TAGGGGTATT
* * * *
98575988 TCGATCATTTCACCCTATGGGGGTATT
1 ACAATCATTTTACCCTATAGGGGTATT
**** *
98576015 TTGGTCATTTTACCCTATGGGGGTATT
1 ACAATCATTTTACCCTATAGGGGTATT
** *
98576042 -CTGGTCATTTTACCCTATGGGGGTATT
1 AC-AATCATTTTACCCTATAGGGGTATT
* * * * *
98576069 TCGATTATTTTAACCTATGGGGGTATT
1 ACAATCATTTTACCCTATAGGGGTATT
**** * *
98576096 TTGGTCATTTTAACCTATGGGGGTATT
1 ACAATCATTTTACCCTATAGGGGTATT
** * *
98576123 -CTGGTCATTTTACCTTAT-GATGGTATT
1 AC-AATCATTTTACCCTATAG-GGGTATT
* *
98576150 CCAGTCATTTTACCCTAT-GAGGGTATT
1 ACAATCATTTTACCCTATAG-GGGTATT
* ** * *
98576177 TCTGTCATTTTACCCTATTGGAGTATT
1 ACAATCATTTTACCCTATAGGGGTATT
* ** * *
98576204 CCGGTTATTTTACCCTATGGGGGTATT
1 ACAATCATTTTACCCTATAGGGGTATT
**
98576231 -CTGGTCATTTTACCCTAT-GGGGATATT
1 AC-AATCATTTTACCCTATAGGGG-TATT
****
98576258 TTGGTCATTTTACCCTATAGGGGTATT
1 ACAATCATTTTACCCTATAGGGGTATT
* **
98576285 TCGGTCATTTTACCCTAT-GAGGGTATT
1 ACAATCATTTTACCCTATAG-GGGTATT
98576312 TCGGTTATTT
Statistics
Matches: 395, Mismatches: 47, Indels: 50
0.80 0.10 0.10
Matches are distributed among these distances:
26 30 0.08
27 332 0.84
28 7 0.02
29 1 0.00
30 1 0.00
33 2 0.01
34 1 0.00
36 20 0.05
37 1 0.00
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (27 bp):
ACAATCATTTTACCCTATAGGGGTATT
Found at i:98575888 original size:36 final size:36
Alignment explanation
Indices: 98575838--98575907 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
98575828 TACCTTATAG
*
98575838 GGGTATTACAATCATTTTACCCTATGGGGGTATTTA
1 GGGTATTACAATCATTTTACCCTATGAGGGTATTTA
* * *
98575874 GGGTATTTCGATCATTTTACCCTATTAGGGTATT
1 GGGTATTACAATCATTTTACCCTATGAGGGTATT
98575908 GCTGTCATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.41
Consensus pattern (36 bp):
GGGTATTACAATCATTTTACCCTATGAGGGTATTTA
Found at i:98576312 original size:27 final size:27
Alignment explanation
Indices: 98575874--98576352 Score: 561
Period size: 27 Copynumber: 17.7 Consensus size: 27
98575864 GGGGTATTTA
* **
98575874 GGGTATTTCGATCATTTTACCCTATTA
1 GGGTATTTCGGTCATTTTACCCTATGG
* *
98575901 GGGTATTGCTGTCATTTTACCCTATGG
1 GGGTATTTCGGTCATTTTACCCTATGG
* *
98575928 GGGTATTTTGGTCATTTGACCCTAT-G
1 GGGTATTTCGGTCATTTTACCCTATGG
** **
98575954 GGGTATTTCAATCATTTTACCCTATTA
1 GGGTATTTCGGTCATTTTACCCTATGG
* *
98575981 GGGTATTTCGATCATTTCACCCTATGG
1 GGGTATTTCGGTCATTTTACCCTATGG
*
98576008 GGGTATTTTGGTCATTTTACCCTATGG
1 GGGTATTTCGGTCATTTTACCCTATGG
98576035 GGGTA-TTCTGGTCATTTTACCCTATGG
1 GGGTATTTC-GGTCATTTTACCCTATGG
* * *
98576062 GGGTATTTCGATTATTTTAACCTATGG
1 GGGTATTTCGGTCATTTTACCCTATGG
* *
98576089 GGGTATTTTGGTCATTTTAACCTATGG
1 GGGTATTTCGGTCATTTTACCCTATGG
* *
98576116 GGGTA-TTCTGGTCATTTTACCTTATGA
1 GGGTATTTC-GGTCATTTTACCCTATGG
* * * *
98576143 TGGTATTCCAGTCATTTTACCCTATGA
1 GGGTATTTCGGTCATTTTACCCTATGG
* *
98576170 GGGTATTTCTGTCATTTTACCCTATTG
1 GGGTATTTCGGTCATTTTACCCTATGG
* * *
98576197 GAGTATTCCGGTTATTTTACCCTATGG
1 GGGTATTTCGGTCATTTTACCCTATGG
98576224 GGGTA-TTCTGGTCATTTTACCCTATGG
1 GGGTATTTC-GGTCATTTTACCCTATGG
* * *
98576251 GGATATTTTGGTCATTTTACCCTATAG
1 GGGTATTTCGGTCATTTTACCCTATGG
*
98576278 GGGTATTTCGGTCATTTTACCCTATGA
1 GGGTATTTCGGTCATTTTACCCTATGG
* *
98576305 GGGTATTTCGGTTATTTTATCCTATGG
1 GGGTATTTCGGTCATTTTACCCTATGG
*
98576332 GGGCATTTCGGTCATTATTAC
1 GGGTATTTCGGTCATT-TTAC
98576353 GTCCCAACAT
Statistics
Matches: 382, Mismatches: 62, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
26 28 0.07
27 344 0.90
28 10 0.03
ACGTcount: A:0.18, C:0.17, G:0.22, T:0.43
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTACCCTATGG
Found at i:98579611 original size:27 final size:27
Alignment explanation
Indices: 98579574--98579858 Score: 277
Period size: 27 Copynumber: 10.6 Consensus size: 27
98579564 AAACATACAT
* **
98579574 CACATAGGGGCAAAACAGTCATCCTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
98579601 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* ** * * *
98579628 CTCGCAAGAGAAAAATC-GACATTTTAC
1 CACATAAGGGCAAAA-CAGTCATTTTAC
* ** *
98579655 CATATAAGGGCAAAATTGTCATTTTAA
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
98579682 CAAATAAGGGCAAATCAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
98579709 CACATAAGGGCAAAACTGTCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
98579736 CAAATAAGGGTAAAACAGTCTTTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
*
98579763 CACATAAGGGCAAAACCA-TCATTTTAA
1 CACATAAGGGCAAAA-CAGTCATTTTAC
* *
98579790 CACAAAAGGGCAAAACAGTCATTTTGC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
98579817 CACATAAGGGAAAAACTGTCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
98579844 CACATAAGGGCAAAA
1 CACATAAGGGCAAAA
98579859 TCATCATATT
Statistics
Matches: 206, Mismatches: 48, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
26 2 0.01
27 202 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:98579891 original size:81 final size:81
Alignment explanation
Indices: 98579647--98579898 Score: 290
Period size: 81 Copynumber: 3.1 Consensus size: 81
98579637 GAAAAATCGA
* * * * * *
98579647 CATTTTACCATATAAGGGCAAAATTGTCATTTTAACAAATAAGGGC-AAATCAATCATTTTACCA
1 CATTTTACCAAATAAGGGAAAAACTGTCATTTTATCACATAAGGGCAAAATC-ATCATTTTAACA
*
98579711 CATAAGGGCAAAACTGT
65 CATAAGGGCAAAACAGT
* * * * *
98579728 CATTTTATCAAATAAGGGTAAAACAGTCTTTTTATCACATAAGGGCAAAACCATCATTTTAACAC
1 CATTTTACCAAATAAGGGAAAAACTGTCATTTTATCACATAAGGGCAAAATCATCATTTTAACAC
*
98579793 AAAAGGGCAAAACAGT
66 ATAAGGGCAAAACAGT
* * * ***
98579809 CATTTTGCCACATAAGGGAAAAACTGTCATTTTATCACATAAGGGCAAAATCATCATATTAATGT
1 CATTTTACCAAATAAGGGAAAAACTGTCATTTTATCACATAAGGGCAAAATCATCATTTTAACAC
* * *
98579874 ATGAGGGTAAAAGAGT
66 ATAAGGGCAAAACAGT
98579890 CATTTTACC
1 CATTTTACC
98579899 TTACAGGGGT
Statistics
Matches: 142, Mismatches: 28, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
81 138 0.97
82 4 0.03
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (81 bp):
CATTTTACCAAATAAGGGAAAAACTGTCATTTTATCACATAAGGGCAAAATCATCATTTTAACAC
ATAAGGGCAAAACAGT
Found at i:98579935 original size:27 final size:26
Alignment explanation
Indices: 98579887--98580174 Score: 157
Period size: 27 Copynumber: 11.0 Consensus size: 26
98579877 AGGGTAAAAG
* *
98579887 AGTCATTTTACCTTA-CAGGGGTATTAT
1 AGTCATTTTACCCTATGA-GGGTATT-T
*
98579914 AGTTATTTTACCCTATGAGGGTATTT
1 AGTCATTTTACCCTATGAGGGTATTT
* * *
98579940 CGATCATTTTACCCTGTGAGGGTATTCC
1 AG-TCATTTTACCCTATGAGGGTATT-T
* *
98579968 GGTCATTTTACCCTATGGGGGTATTT
1 AGTCATTTTACCCTATGAGGGTATTT
* * **
98579994 CGATCATTTTACCCTTTG-GGGTTATCC
1 AG-TCATTTTACCCTATGAGGG-TATTT
* * *
98580021 GGTCATTTTACCCTATGCGGGTATTCC
1 AGTCATTTTACCCTATGAGGGTATT-T
*
98580048 GGTCATTTTACCCTATG-GGG-A--T
1 AGTCATTTTACCCTATGAGGGTATTT
* *** * *
98580070 ATTC-CGGTACCTTATGGGGGTATTT
1 AGTCATTTTACCCTATGAGGGTATTT
98580095 CAGTCATTTTACCCTATG-GTGGTATTT
1 -AGTCATTTTACCCTATGAG-GGTATTT
*
98580122 CGGTCA-TTTACCCTATG-GGGTAATTCT
1 -AGTCATTTTACCCTATGAGGGT-ATT-T
* *
98580149 GGTCATTTTATCCTAT-AGGGGTATTT
1 AGTCATTTTACCCTATGA-GGGTATTT
98580175 CGGTCATTAT
Statistics
Matches: 210, Mismatches: 32, Indels: 39
0.75 0.11 0.14
Matches are distributed among these distances:
21 8 0.04
22 5 0.02
23 1 0.00
25 5 0.02
26 51 0.24
27 134 0.64
28 6 0.03
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.41
Consensus pattern (26 bp):
AGTCATTTTACCCTATGAGGGTATTT
Done.